Query 034401
Match_columns 95
No_of_seqs 110 out of 216
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 03:16:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034401.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034401hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2h9ec1 g.22.1.1 (C:6-83) Anti 65.4 0.25 1.8E-05 29.6 -1.8 54 34-88 7-74 (78)
2 d1jv2b5 g.3.11.6 (B:563-605) I 57.2 1.8 0.00013 24.1 1.0 19 62-80 21-40 (43)
3 d1exta1 g.24.1.1 (A:13-71) Tum 52.3 1.6 0.00011 24.9 0.2 32 60-94 16-58 (59)
4 d1xu2r_ g.24.1.2 (R:) Tumor ne 48.9 3.1 0.00022 22.5 1.1 20 40-59 16-35 (36)
5 d2aepa1 b.68.1.1 (A:83-469) In 35.5 3.7 0.00027 31.8 0.0 18 68-85 185-202 (387)
6 d1f8ea_ b.68.1.1 (A:) Influenz 31.9 4.6 0.00034 31.3 0.0 17 69-85 188-204 (388)
7 d1hx2a_ g.22.1.2 (A:) BSTI {Fi 27.0 1.4 9.9E-05 25.2 -3.0 36 34-73 10-45 (60)
8 d2c7na1 g.39.1.15 (A:18-73) Ra 22.8 6.1 0.00045 23.0 -0.6 16 71-86 7-26 (56)
9 d1kloa3 g.3.11.2 (A:122-172) L 21.5 14 0.001 19.9 0.8 21 65-85 1-28 (51)
10 d2heyr3 g.24.1.1 (R:29-82) Tum 19.5 7.8 0.00057 21.6 -0.7 26 59-87 12-45 (54)
No 1
>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm (Ancylostoma caninum) [TaxId: 29170]}
Probab=65.39 E-value=0.25 Score=29.60 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=24.1
Q ss_pred CCCChH-HhhHHHhcCCCCchHHHHHHH------hcccccccCCCCCCCC-------CCCCcccccccC
Q 034401 34 SSECNP-KCSYRCSATSHKKPCMFFCLK------CCSKCLCVPPGTYGNK-------QVCPCYNNWKTK 88 (95)
Q Consensus 34 ~~~C~~-~C~~RCs~~~~~~~C~~~C~~------CC~~C~CVP~GtyGnk-------~~CPCY~~~~t~ 88 (95)
..+|.+ .|..-|+.-.....|...++. |=.-|.| |+|++-|. ++||||.+-+..
T Consensus 7 y~~C~~~~C~~tC~~~~~~~~c~~~~~~~c~~~~CveGC~C-p~G~v~~~~g~CV~~~~CpC~~~g~~Y 74 (78)
T d2h9ec1 7 YDSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCHQDCVC-EEGFYRNKDDKCVSAEDCELDNMDFIY 74 (78)
T ss_dssp CC-------CCBCCCTTCC-------------------CEE-CSSCEECTTCCEECHHHHGGGGEEEEC
T ss_pred ccccCCCcCccccCCCcccccccccCCccccCCCCCCcCCC-CCCeeEcCCCCEEChhhCCcccCCEEc
Confidence 346765 477777765555555555543 3356778 89998554 468998766554
No 2
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.17 E-value=1.8 Score=24.09 Aligned_cols=19 Identities=47% Similarity=1.597 Sum_probs=14.4
Q ss_pred cccccccCCCCCCCC-CCCC
Q 034401 62 CSKCLCVPPGTYGNK-QVCP 80 (95)
Q Consensus 62 C~~C~CVP~GtyGnk-~~CP 80 (95)
|++|.|-.||.+|.. |+||
T Consensus 21 cG~C~C~~~gy~G~~Ce~Cp 40 (43)
T d1jv2b5 21 CGSCVCIQPGSYGDTCEKCP 40 (43)
T ss_dssp TTEEEECCSSCBSTTSCBCT
T ss_pred CCEeEeCCCCccCCccccCC
Confidence 789999777877766 5565
No 3
>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.33 E-value=1.6 Score=24.93 Aligned_cols=32 Identities=38% Similarity=0.834 Sum_probs=19.8
Q ss_pred HhcccccccCCCCC------CC--CCCC-Cccccccc--CCCCCCC
Q 034401 60 KCCSKCLCVPPGTY------GN--KQVC-PCYNNWKT--KEGGPKC 94 (95)
Q Consensus 60 ~CC~~C~CVP~Gty------Gn--k~~C-PCY~~~~t--~~g~pKC 94 (95)
.||.+| |||+| +. .-+| ||-..-.+ .++.++|
T Consensus 16 ~cC~~C---ppG~~~~~~Ct~~~~~t~C~pC~~gtyt~~~N~~~~C 58 (59)
T d1exta1 16 ICCTKC---HKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHC 58 (59)
T ss_dssp CEEECB---CTTEEEEECCSSTTSCCEEEECCTTEECCSSBCCSSC
T ss_pred cCCCCC---CCCCeecCccCCCCCCCEeccCCCCCccCcCCCCCCc
Confidence 466665 89988 42 4688 88776544 2334554
No 4
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.88 E-value=3.1 Score=22.50 Aligned_cols=20 Identities=30% Similarity=0.829 Sum_probs=17.5
Q ss_pred HhhHHHhcCCCCchHHHHHH
Q 034401 40 KCSYRCSATSHKKPCMFFCL 59 (95)
Q Consensus 40 ~C~~RCs~~~~~~~C~~~C~ 59 (95)
-|.-|||..+-+-.|.+||+
T Consensus 16 pc~lrcs~~~ppl~cq~yc~ 35 (36)
T d1xu2r_ 16 PCQLRCSSNTPPLTCQRYCN 35 (36)
T ss_dssp EGGGTTTSSSCCGGGHHHHH
T ss_pred cceeecCCCCCchhhhhhcc
Confidence 37889999889999999996
No 5
>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=35.51 E-value=3.7 Score=31.83 Aligned_cols=18 Identities=22% Similarity=0.652 Sum_probs=15.3
Q ss_pred cCCCCCCCCCCCCccccc
Q 034401 68 VPPGTYGNKQVCPCYNNW 85 (95)
Q Consensus 68 VP~GtyGnk~~CPCY~~~ 85 (95)
.++|+.++.|||.||.+.
T Consensus 185 ~l~g~~~HiEECSCYp~~ 202 (387)
T d2aepa1 185 PLSGSAQHVEECSCYPRY 202 (387)
T ss_dssp ECCSSCCCCEEEEEEEET
T ss_pred ecCCCcCceEeeeecCCC
Confidence 367899999999999875
No 6
>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=31.93 E-value=4.6 Score=31.29 Aligned_cols=17 Identities=29% Similarity=0.659 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCccccc
Q 034401 69 PPGTYGNKQVCPCYNNW 85 (95)
Q Consensus 69 P~GtyGnk~~CPCY~~~ 85 (95)
++|+.++.|||.||.+.
T Consensus 188 l~g~~~HiEECSCYp~~ 204 (388)
T d1f8ea_ 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeecCCC
Confidence 57889999999999764
No 7
>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]}
Probab=27.01 E-value=1.4 Score=25.22 Aligned_cols=36 Identities=25% Similarity=0.591 Sum_probs=25.9
Q ss_pred CCCChHHhhHHHhcCCCCchHHHHHHHhcccccccCCCCC
Q 034401 34 SSECNPKCSYRCSATSHKKPCMFFCLKCCSKCLCVPPGTY 73 (95)
Q Consensus 34 ~~~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gty 73 (95)
...|+++|..-|+.-.....|.+.|- .-|.| |+|++
T Consensus 10 y~~C~s~Cp~tC~~~~~~~~C~~~C~---eGC~C-p~G~v 45 (60)
T d1hx2a_ 10 FQTCASSCPKTCETRNKLVLCDKKCN---QRCGC-ISGTV 45 (60)
T ss_dssp EESSCCSSCCCTTTCCCSSSCSSCCC---SEEEE-CTTCE
T ss_pred eCcccCCCccccCCCCCCCCCCCCCC---ccCCC-CCCEe
Confidence 34788888888887666666776443 55777 88876
No 8
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.85 E-value=6.1 Score=23.05 Aligned_cols=16 Identities=38% Similarity=0.933 Sum_probs=11.8
Q ss_pred CCCCC---CCCC-Ccccccc
Q 034401 71 GTYGN---KQVC-PCYNNWK 86 (95)
Q Consensus 71 GtyGn---k~~C-PCY~~~~ 86 (95)
|.||| .+.| .||+|+.
T Consensus 7 GFyG~~~~~g~CSkCyr~~~ 26 (56)
T d2c7na1 7 GYYGNPAWQGFCSKCWREEY 26 (56)
T ss_dssp SSCCCGGGTTCCHHHHHHHH
T ss_pred CCCCCcccCCcchHHHHHHH
Confidence 66775 4789 7999874
No 9
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.55 E-value=14 Score=19.90 Aligned_cols=21 Identities=33% Similarity=0.814 Sum_probs=14.0
Q ss_pred ccccCCCCCCCC-------CCCCccccc
Q 034401 65 CLCVPPGTYGNK-------QVCPCYNNW 85 (95)
Q Consensus 65 C~CVP~GtyGnk-------~~CPCY~~~ 85 (95)
|+|-|.||.++. ..|+|-.+.
T Consensus 1 C~C~~~Gs~~~~~~Cd~~tGqC~Ck~~v 28 (51)
T d1kloa3 1 CACNPYGTVQQQSSCNPVTGQCQCLPHV 28 (51)
T ss_dssp CCCCTTTBGGGCCCCCTTTCCCCBCTTE
T ss_pred CcCCCCcccCCCCccCCCCCeecCCCCC
Confidence 788899987654 356665443
No 10
>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.46 E-value=7.8 Score=21.57 Aligned_cols=26 Identities=35% Similarity=0.991 Sum_probs=15.8
Q ss_pred HHhcccccccCCCCC-------CCCCCC-Cccccccc
Q 034401 59 LKCCSKCLCVPPGTY-------GNKQVC-PCYNNWKT 87 (95)
Q Consensus 59 ~~CC~~C~CVP~Gty-------Gnk~~C-PCY~~~~t 87 (95)
|.||.+| |||+| +..-+| ||-....|
T Consensus 12 g~CC~~C---~pG~~~~~~Cs~~~~t~C~pC~~gtyt 45 (54)
T d2heyr3 12 DRCCHEC---RPGNGMVSRCSRSQNTVCRPCGPGFYN 45 (54)
T ss_dssp TEEEECB---CTTEEEEECCCSSCCCEEEECCTTEEC
T ss_pred CeECCCC---CCCCeEcCcCCCCCCCeeccCcCCCcc
Confidence 4677775 78876 344567 67555443
Done!