BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034402
MGESSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFE
AYAQSQSKEDRMSEEETNQMIQKMISTNSSKSQND

High Scoring Gene Products

Symbol, full name Information P value
AT3G55240 protein from Arabidopsis thaliana 6.4e-28
AT3G28990 protein from Arabidopsis thaliana 8.0e-21
AT5G02580 protein from Arabidopsis thaliana 1.6e-17
AT1G10657 protein from Arabidopsis thaliana 4.1e-10
AT3G10250 protein from Arabidopsis thaliana 0.00061
AT5G04090 protein from Arabidopsis thaliana 0.00091

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034402
        (95 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2100676 - symbol:AT3G55240 "AT3G55240" species...   312  6.4e-28   1
TAIR|locus:2086992 - symbol:AT3G28990 "AT3G28990" species...   245  8.0e-21   1
TAIR|locus:2181838 - symbol:AT5G02580 "AT5G02580" species...   214  1.6e-17   1
TAIR|locus:4010713425 - symbol:AT1G10657 "AT1G10657" spec...   144  4.1e-10   1
TAIR|locus:2076299 - symbol:AT3G10250 "AT3G10250" species...    93  0.00061   1
TAIR|locus:2146728 - symbol:AT5G04090 "AT5G04090" species...    91  0.00091   1


>TAIR|locus:2100676 [details] [associations]
            symbol:AT3G55240 "AT3G55240" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0032502 "developmental process"
            evidence=IMP] EMBL:CP002686 EMBL:AL132954 GO:GO:0032502
            InterPro:IPR006476 Pfam:PF09713 TIGRFAMs:TIGR01589
            HOGENOM:HOG000238449 EMBL:AY080704 EMBL:BT000964 IPI:IPI00529742
            PIR:T47663 RefSeq:NP_191084.1 UniGene:At.35039 IntAct:Q9M3C7
            PRIDE:Q9M3C7 EnsemblPlants:AT3G55240.1 GeneID:824690
            KEGG:ath:AT3G55240 TAIR:At3g55240 InParanoid:Q9M3C7 OMA:HANINPV
            PhylomeDB:Q9M3C7 ProtClustDB:CLSN2915771 Genevestigator:Q9M3C7
            Uniprot:Q9M3C7
        Length = 95

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 63/92 (68%), Positives = 73/92 (79%)

Query:     4 SSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWXXXXXXXXXXXXAYA 63
             SSASYIHMVQH+IEKCLIF M+KEEC+EALSKHANI PVITSTVW            AY 
Sbjct:     5 SSASYIHMVQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFFKAYE 64

Query:    64 QSQSKEDRMSEEETNQMIQKMISTNSSKSQND 95
             + QSK+++MSEEETNQMIQK+IS +SSK  +D
Sbjct:    65 ERQSKQEQMSEEETNQMIQKIIS-DSSKESDD 95


>TAIR|locus:2086992 [details] [associations]
            symbol:AT3G28990 "AT3G28990" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB025615
            InterPro:IPR006476 Pfam:PF09713 TIGRFAMs:TIGR01589
            HOGENOM:HOG000238449 IPI:IPI00548167 RefSeq:NP_189541.1
            UniGene:At.53553 EnsemblPlants:AT3G28990.1 GeneID:822539
            KEGG:ath:AT3G28990 TAIR:At3g28990 eggNOG:NOG240278
            InParanoid:Q9MBG6 OMA:HMIETCL PhylomeDB:Q9MBG6
            ProtClustDB:CLSN2684088 Genevestigator:Q9MBG6 Uniprot:Q9MBG6
        Length = 88

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/83 (57%), Positives = 58/83 (69%)

Query:     4 SSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWXXXXXXXXXXXXAYA 63
             S A YIH+VQH+IE CL F M+KEECMEALS++ANI P+ITSTVW             Y 
Sbjct:     5 SPAVYIHLVQHMIETCLTFNMSKEECMEALSENANINPIITSTVWKELVKENKDFFETYE 64

Query:    64 QSQSKEDRMSEEETNQMIQKMIS 86
             Q   K++ MSEEETNQ+IQ +IS
Sbjct:    65 QKLMKKESMSEEETNQLIQNIIS 87


>TAIR|locus:2181838 [details] [associations]
            symbol:AT5G02580 "AT5G02580" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
            [GO:0009062 "fatty acid catabolic process" evidence=RCA]
            EMBL:CP002688 GenomeReviews:BA000015_GR InterPro:IPR006476
            Pfam:PF09713 TIGRFAMs:TIGR01589 HOGENOM:HOG000238449 EMBL:BT005835
            EMBL:AK227439 IPI:IPI00539050 RefSeq:NP_568103.3 UniGene:At.33400
            EnsemblPlants:AT5G02580.1 GeneID:831095 KEGG:ath:AT5G02580
            TAIR:At5g02580 eggNOG:NOG281202 InParanoid:Q84TG0 OMA:EFFEAYE
            PhylomeDB:Q84TG0 ProtClustDB:CLSN2918610 Genevestigator:Q84TG0
            Uniprot:Q84TG0
        Length = 91

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 42/83 (50%), Positives = 57/83 (68%)

Query:     4 SSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWXXXXXXXXXXXXAYA 63
             S ASYIH+V HLIE+C++F M KEECM+AL KHANIKP+ITSTVW            AY 
Sbjct:     7 SQASYIHLVHHLIEECIVFNMGKEECMDALFKHANIKPIITSTVWKELAKENKEFFEAY- 65

Query:    64 QSQSKEDRMSEEETNQMIQKMIS 86
               + +E+  +E+ET + I+ ++S
Sbjct:    66 -ERRREEIPTEKETARRIRDLLS 87


>TAIR|locus:4010713425 [details] [associations]
            symbol:AT1G10657 "AT1G10657" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR
            InterPro:IPR006476 Pfam:PF09713 EMBL:AK228507 IPI:IPI00775515
            RefSeq:NP_001077506.1 UniGene:At.46562 EnsemblPlants:AT1G10657.1
            GeneID:5007676 KEGG:ath:AT1G10657 TAIR:At1g10657
            HOGENOM:HOG000238449 PhylomeDB:Q0WR17 ProtClustDB:CLSN2699039
            Genevestigator:Q0WR17 Uniprot:Q0WR17
        Length = 125

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 24/42 (57%), Positives = 36/42 (85%)

Query:     7 SYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVW 48
             SYI MVQH+IE+C++ RMT++EC++AL  HA+I P++T TV+
Sbjct:    22 SYIRMVQHMIERCILLRMTRDECVKALDHHASILPLVTLTVF 63


>TAIR|locus:2076299 [details] [associations]
            symbol:AT3G10250 "AT3G10250" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002686 InterPro:IPR006476
            Pfam:PF09713 TIGRFAMs:TIGR01589 EMBL:AY054259 EMBL:AY079118
            EMBL:AY084385 EMBL:AK317093 IPI:IPI00519418 RefSeq:NP_566370.1
            RefSeq:NP_974271.1 UniGene:At.18434 PaxDb:Q940M5 PRIDE:Q940M5
            EnsemblPlants:AT3G10250.1 EnsemblPlants:AT3G10250.2 GeneID:820187
            KEGG:ath:AT3G10250 TAIR:At3g10250 eggNOG:NOG121197
            InParanoid:Q940M5 OMA:SQIPRNF PhylomeDB:Q940M5
            ProtClustDB:CLSN2688236 Genevestigator:Q940M5 Uniprot:Q940M5
        Length = 324

 Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
 Identities = 28/92 (30%), Positives = 45/92 (48%)

Query:     9 IHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWXXXXXXXXXXXXAY-----A 63
             I +VQ+LIE+CL   M ++E ++ L + A I+P  T  VW            AY      
Sbjct:    14 IQLVQNLIERCLQLYMNQKEVVDTLLEQAKIEPGFTELVWQKLEEENREFFKAYYLRLMV 73

Query:    64 QSQSKE-DRMSEEETNQMIQKMISTNSSKSQN 94
             + Q  E +++ E++ + M Q M  T  +  QN
Sbjct:    74 KHQIMEFNKLLEQQVHHMRQ-MHPTGVASVQN 104


>TAIR|locus:2146728 [details] [associations]
            symbol:AT5G04090 "AT5G04090" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 GenomeReviews:BA000015_GR
            HOGENOM:HOG000241257 InterPro:IPR006476 Pfam:PF09713
            TIGRFAMs:TIGR01589 EMBL:BT015375 EMBL:BT015671 IPI:IPI00538438
            RefSeq:NP_974728.2 UniGene:At.50429 EnsemblPlants:AT5G04090.2
            GeneID:830288 KEGG:ath:AT5G04090 TAIR:At5g04090 eggNOG:NOG262858
            OMA:AINTNIP PhylomeDB:Q66GM7 ProtClustDB:CLSN2681631
            Genevestigator:Q66GM7 Uniprot:Q66GM7
        Length = 305

 Score = 91 (37.1 bits), Expect = 0.00091, P = 0.00091
 Identities = 24/79 (30%), Positives = 40/79 (50%)

Query:     9 IHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWXXXXXXXXXXXXAY-AQSQS 67
             I +VQ+LIE+CL   M ++E ++ L + A I+P  T  VW            AY  +   
Sbjct:    14 IQLVQNLIERCLQLYMNQKEVVDTLLEQAKIEPGFTELVWQKLEEENREFFKAYYLRLMV 73

Query:    68 KEDRMSEEETNQMIQKMIS 86
             K   M   E N+++++ I+
Sbjct:    74 KHQIM---EYNELLEQQIN 89


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.118   0.319    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       95        83   0.00091  102 3  10 23  0.44    29
                                                     29  0.44    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  137 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.19u 0.25s 13.44t   Elapsed:  00:00:01
  Total cpu time:  13.19u 0.25s 13.44t   Elapsed:  00:00:01
  Start:  Thu May  9 13:48:28 2013   End:  Thu May  9 13:48:29 2013

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