BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034402
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8B0U2|L_LBVAV RNA-directed RNA polymerase L OS=Lettuce big-vein associated virus
(isolate Japan/Kagawa) GN=L PE=3 SV=1
Length = 2040
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 2 GESSASYIHMVQH------LIEKCLIFRMTKEECMEALS-KHANIKPVITST------VW 48
G +Y M+ H L+ L+ MT + M+ L K I P I+ST V
Sbjct: 1542 GLDQVTYAEMMCHHRCLEKLLSSNLLTHMTMDRAMKYLPIKITKILPKISSTRPNTIAVT 1601
Query: 49 NELEKENKEFFEAYAQSQSKEDRMSEEETNQMIQKMIST 87
E+E EN+EF + + + + +TNQMIQ S+
Sbjct: 1602 REVETENREFSDTFPIDERVTYPEMDLKTNQMIQYPTSS 1640
>sp|P13866|SC5A1_HUMAN Sodium/glucose cotransporter 1 OS=Homo sapiens GN=SLC5A1 PE=1 SV=1
Length = 664
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 14 HLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNEL---EKENKEFFEAY----AQSQ 66
HL C R +KEE ++ ++ NI+ T+ E EK+ F AY Q
Sbjct: 555 HLYRLCWSLRNSKEERIDLDAEEENIQEGPKETIEIETQVPEKKKGIFRRAYDLFCGLEQ 614
Query: 67 SKEDRMSEEETNQMIQKMISTN 88
+M+EEE M KM T+
Sbjct: 615 HGAPKMTEEEEKAMKMKMTDTS 636
>sp|P11170|SC5A1_RABIT Sodium/glucose cotransporter 1 OS=Oryctolagus cuniculus GN=SLC5A1
PE=2 SV=1
Length = 662
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 14 HLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFF-EAY----AQSQSK 68
HL C R +KEE ++ + +I+ E+ K+ K FF AY Q K
Sbjct: 555 HLYRLCWSLRNSKEERIDLDAGEEDIQEAPEEATDTEVPKKKKGFFRRAYDLFCGLDQDK 614
Query: 69 EDRMSEEETNQMIQKMISTN 88
+M++EE M K+ T+
Sbjct: 615 GPKMTKEEEAAMKLKLTDTS 634
>sp|P26429|SC5A1_PIG Sodium/glucose cotransporter 1 (Fragment) OS=Sus scrofa GN=SLC5A1
PE=2 SV=1
Length = 605
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 14 HLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAY-----AQSQSK 68
HL C R +KEE ++ ++ +I+ T+ E+ +E K F Q K
Sbjct: 498 HLYRLCWSLRNSKEERIDLDAEEEDIQEAPEETIEIEVPEEKKGCFRRTYDLFCGLDQQK 557
Query: 69 EDRMSEEETNQMIQKMISTN 88
+M++EE M KM T+
Sbjct: 558 GPKMTKEEEAAMKLKMTDTS 577
>sp|Q5GTR3|PNP_WOLTR Polyribonucleotide nucleotidyltransferase OS=Wolbachia sp. subsp.
Brugia malayi (strain TRS) GN=pnp PE=3 SV=1
Length = 755
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 21 IFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYAQSQSKE 69
+ ++ KE +K + P+ S + +LEK +K+F EAY+Q+ +E
Sbjct: 215 VIKLIKEFADTIGNKFDSFAPIDISDIMQDLEKHSKDFEEAYSQTVKQE 263
>sp|B3CM21|PNP_WOLPP Polyribonucleotide nucleotidyltransferase OS=Wolbachia pipientis
subsp. Culex pipiens (strain wPip) GN=pnp PE=3 SV=1
Length = 758
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 21 IFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYAQSQSKE 69
+ ++ KE +K + PV S + ELEK K+F EAY+++ +E
Sbjct: 215 VIKLIKEFADTVGNKPESFAPVDISDITQELEKYRKDFEEAYSKTVKQE 263
>sp|Q73GN4|PNP_WOLPM Polyribonucleotide nucleotidyltransferase OS=Wolbachia pipientis
wMel GN=pnp PE=3 SV=1
Length = 757
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 21 IFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYAQSQSKE 69
+ ++ KE +K + P+ S + ELEK K+F +AY+Q+ +E
Sbjct: 215 VIKLIKEFADTIGNKPESFAPIDASDITQELEKYGKDFEKAYSQTVKQE 263
>sp|C0R3T4|PNP_WOLWR Polyribonucleotide nucleotidyltransferase OS=Wolbachia sp. subsp.
Drosophila simulans (strain wRi) GN=pnp PE=3 SV=1
Length = 757
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 21 IFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYAQSQSKE 69
+ ++ KE +K + P+ S + ELEK K+F +AY+Q+ +E
Sbjct: 215 VIKLIKEFADTIGNKPESFAPIDASDITQELEKYGKDFEKAYSQTVKQE 263
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.119 0.319
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,709,924
Number of Sequences: 539616
Number of extensions: 935068
Number of successful extensions: 4323
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 4299
Number of HSP's gapped (non-prelim): 52
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)