Query 034402
Match_columns 95
No_of_seqs 89 out of 106
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 03:17:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2es9_A Putative cytoplasmic pr 91.9 0.11 3.8E-06 36.3 2.9 41 29-69 56-105 (115)
2 2di0_A Activating signal coint 81.7 3 0.0001 26.8 4.8 38 6-44 14-60 (71)
3 2ozb_B U4/U6 small nuclear rib 75.5 2.8 9.5E-05 32.1 3.8 49 1-49 102-152 (260)
4 1b8z_A Protein (histonelike pr 74.2 4.7 0.00016 25.0 4.1 30 24-53 1-30 (90)
5 1mul_A NS2, HU-2, DNA binding 72.1 6.3 0.00022 24.5 4.3 29 24-52 1-29 (90)
6 3icx_A PRE mRNA splicing prote 69.5 4.6 0.00016 31.0 3.8 48 1-48 88-137 (255)
7 1owf_A IHF-alpha, integration 67.0 8 0.00027 24.6 4.1 30 24-53 3-32 (99)
8 2o97_B NS1, HU-1, DNA-binding 66.9 7.7 0.00026 24.2 3.9 28 24-51 1-28 (90)
9 1p71_A DNA-binding protein HU; 66.5 7.6 0.00026 24.4 3.9 28 24-51 1-28 (94)
10 3c4i_A DNA-binding protein HU 65.5 8 0.00027 24.6 3.9 29 24-52 1-29 (99)
11 2e9x_A DNA replication complex 65.2 3.8 0.00013 28.2 2.4 49 15-65 71-120 (149)
12 2nnw_A NOP5/NOP56 related prot 62.0 7.4 0.00025 31.4 3.8 48 1-48 222-271 (376)
13 3pkr_A FLIG, flagellar motor s 59.4 40 0.0014 25.8 7.4 60 1-63 112-178 (279)
14 1exe_A Transcription factor 1; 59.3 8.4 0.00029 24.6 3.1 29 24-52 1-29 (99)
15 1owf_B IHF-beta, integration H 58.1 15 0.00052 22.9 4.1 28 24-51 1-29 (94)
16 3rhi_A DNA-binding protein HU; 58.0 8.5 0.00029 24.3 2.9 29 23-51 3-31 (93)
17 3pla_A NOP5, PRE mRNA splicing 57.2 9.9 0.00034 30.9 3.8 51 1-51 221-273 (388)
18 2dii_A TFIIH basal transcripti 55.4 5.8 0.0002 24.9 1.7 36 49-85 20-55 (61)
19 3doe_B ADP-ribosylation factor 49.2 13 0.00046 27.0 3.1 45 6-53 69-116 (165)
20 3hjl_A Flagellar motor switch 45.2 67 0.0023 25.0 6.7 61 1-63 167-234 (329)
21 2np2_A HBB; protein-DNA comple 44.6 22 0.00075 22.9 3.3 29 24-52 9-42 (108)
22 1g2h_A Transcriptional regulat 44.2 36 0.0012 19.6 4.0 35 13-54 23-57 (61)
23 4fhr_B Flagellar motor switch 42.2 78 0.0027 23.1 6.3 60 1-62 54-120 (216)
24 3c18_A Nucleotidyltransferase- 42.1 15 0.00053 28.7 2.6 28 37-66 168-195 (290)
25 2q9q_C DNA replication complex 41.0 14 0.00049 26.3 2.1 49 15-65 71-120 (196)
26 3qom_A 6-phospho-beta-glucosid 39.6 16 0.00055 29.8 2.5 46 5-65 110-166 (481)
27 4a3y_A Raucaffricine-O-beta-D- 38.0 16 0.00055 30.0 2.2 47 5-66 113-170 (540)
28 2hl7_A Cytochrome C-type bioge 37.7 62 0.0021 20.9 4.6 36 3-38 39-74 (84)
29 2iie_A Integration HOST factor 37.3 99 0.0034 22.2 6.2 30 24-53 47-76 (204)
30 2f4m_B UV excision repair prot 36.9 45 0.0015 20.4 3.7 23 40-62 23-45 (61)
31 3e97_A Transcriptional regulat 36.8 60 0.0021 21.4 4.6 32 20-55 172-203 (231)
32 4hw4_A Induced myeloid leukemi 34.5 1.1E+02 0.0039 21.1 7.9 67 9-87 5-86 (157)
33 2kw0_A CCMH protein; oxidoredu 32.3 82 0.0028 20.7 4.6 36 3-38 36-71 (90)
34 3ta9_A Glycoside hydrolase fam 32.1 29 0.00099 28.1 2.8 37 28-65 110-156 (458)
35 2kua_A BCL-2-like protein 10; 31.9 72 0.0025 22.5 4.6 17 47-63 50-66 (170)
36 1xn7_A Hypothetical protein YH 31.7 53 0.0018 20.3 3.5 25 31-55 20-44 (78)
37 3e98_A GAF domain of unknown f 31.4 10 0.00034 28.3 0.0 11 53-63 41-51 (252)
38 2p6v_A Transcription initiatio 31.3 1E+02 0.0035 21.3 5.1 38 5-42 39-76 (114)
39 3vii_A Beta-glucosidase; cellu 31.1 21 0.00073 29.1 1.9 46 6-66 103-158 (487)
40 4dde_A 6-phospho-beta-glucosid 30.4 28 0.00095 28.3 2.5 46 5-65 106-162 (480)
41 1pve_A HHR23B, UV excision rep 29.7 47 0.0016 21.0 3.0 25 38-62 23-47 (72)
42 3dkw_A DNR protein; CRP-FNR, H 29.3 63 0.0021 21.2 3.7 32 20-55 175-206 (227)
43 2elj_A Transcriptional adapter 29.2 1.1E+02 0.0038 19.3 6.1 47 4-54 37-85 (88)
44 2fmy_A COOA, carbon monoxide o 28.9 87 0.003 20.5 4.4 32 20-55 164-195 (220)
45 2q0t_A Putative gamma-carboxym 28.8 1.6E+02 0.0054 21.0 6.3 57 24-86 9-69 (263)
46 2w3l_A BCL2-XL, apoptosis regu 28.7 1.3E+02 0.0045 20.0 6.1 44 10-64 5-55 (144)
47 1ft9_A Carbon monoxide oxidati 28.5 50 0.0017 21.9 3.1 32 20-55 160-191 (222)
48 1gnx_A Beta-glucosidase; hydro 27.2 34 0.0012 27.7 2.5 46 5-65 106-161 (479)
49 4hz8_A Beta-glucosidase; BGLB, 27.0 33 0.0011 27.7 2.3 38 27-65 101-148 (444)
50 1b6c_B TGF-B superfamily recep 26.8 62 0.0021 22.5 3.5 29 7-35 301-333 (342)
51 1tpx_A Prion protein, major pr 26.7 38 0.0013 23.7 2.3 21 5-25 89-110 (121)
52 3la7_A Global nitrogen regulat 26.4 1.5E+02 0.0051 20.0 5.3 31 21-55 191-221 (243)
53 2oz6_A Virulence factor regula 26.2 76 0.0026 20.4 3.6 31 21-55 162-192 (207)
54 2vof_A BCL-2-related protein A 26.2 86 0.003 21.4 4.1 41 47-87 45-86 (157)
55 2h7b_A Core-binding factor, ML 26.1 1.2E+02 0.0042 20.6 4.8 37 5-41 24-60 (105)
56 3gnp_A OS03G0212800 protein; b 25.4 57 0.0019 26.6 3.4 45 6-65 106-161 (488)
57 1tbx_A ORF F-93, hypothetical 25.4 96 0.0033 18.3 3.8 33 22-54 21-53 (99)
58 3ptm_A Beta-glucosidase OS4BGl 25.2 28 0.00097 28.5 1.6 47 5-66 125-182 (505)
59 3ryp_A Catabolite gene activat 25.0 82 0.0028 20.3 3.6 30 22-55 166-195 (210)
60 1p6r_A Penicillinase repressor 24.8 89 0.003 18.1 3.5 33 22-54 22-54 (82)
61 3iwz_A CAP-like, catabolite ac 24.0 86 0.0029 20.5 3.6 30 22-55 186-215 (230)
62 2zcw_A TTHA1359, transcription 24.0 87 0.003 20.3 3.6 31 21-55 144-174 (202)
63 3d0s_A Transcriptional regulat 23.4 1.2E+02 0.0042 19.8 4.3 31 21-55 175-205 (227)
64 4b3l_A Beta-glucosidase; hydro 23.3 50 0.0017 26.8 2.7 37 28-65 100-147 (479)
65 2vkl_A RV0948C/MT0975; helical 23.2 31 0.0011 21.9 1.2 26 40-65 55-83 (90)
66 4ev0_A Transcription regulator 23.1 94 0.0032 20.1 3.6 30 22-55 162-191 (216)
67 3d7i_A Carboxymuconolactone de 23.1 69 0.0024 19.7 2.9 39 46-86 10-52 (105)
68 3fyr_A Sporulation inhibitor S 22.4 1.3E+02 0.0044 17.8 4.1 33 23-55 5-39 (48)
69 2p1m_A SKP1-like protein 1A; F 22.2 1.3E+02 0.0045 20.3 4.4 31 25-59 129-159 (160)
70 4atd_A Raucaffricine-O-beta-D- 22.1 33 0.0011 28.3 1.5 46 6-66 114-170 (513)
71 1uwi_A Beta-galactosidase; hyd 21.6 26 0.00089 28.3 0.7 45 7-66 125-190 (489)
72 3l7w_A Putative uncharacterize 21.5 83 0.0028 19.6 3.0 31 24-54 23-53 (108)
73 1xd7_A YWNA; structural genomi 21.4 82 0.0028 20.6 3.1 26 29-54 25-50 (145)
74 3ed3_A Protein disulfide-isome 20.9 50 0.0017 24.1 2.1 34 24-63 253-286 (298)
75 2k6x_A Sigma-A, RNA polymerase 20.9 1.4E+02 0.0049 17.7 4.3 46 10-55 9-56 (72)
76 2k02_A Ferrous iron transport 20.9 78 0.0027 20.2 2.8 26 30-55 19-44 (87)
77 2g31_A Reticulon-4; NOGO, heli 20.8 1.4E+02 0.0046 17.9 3.8 32 47-83 9-40 (60)
78 2keb_A DNA polymerase subunit 20.7 1.1E+02 0.0037 20.8 3.6 42 10-53 45-90 (101)
79 3rmi_A Chorismate mutase prote 20.7 1.3E+02 0.0043 19.8 3.9 29 39-67 54-88 (114)
80 3uim_A Brassinosteroid insensi 20.5 1.2E+02 0.0042 20.9 4.0 38 5-43 274-315 (326)
81 4e2i_2 DNA polymerase alpha su 20.4 95 0.0032 20.0 3.1 24 10-33 22-45 (78)
82 1o0l_A Apoptosis regulator BCL 20.0 89 0.003 22.1 3.2 18 46-63 53-70 (188)
No 1
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=91.91 E-value=0.11 Score=36.30 Aligned_cols=41 Identities=34% Similarity=0.540 Sum_probs=30.4
Q ss_pred HHHHHHhhcCCCchhHHHH--HHHHHH-------hcHHHHHHHHHhhhHH
Q 034402 29 CMEALSKHANIKPVITSTV--WNELEK-------ENKEFFEAYAQSQSKE 69 (95)
Q Consensus 29 ~v~~L~~~a~I~P~fT~~V--W~~LE~-------eN~eFFkaY~~~~lk~ 69 (95)
-|.+=-.+-|-+|+||..| |.+=-+ .|||||..|.+-.||.
T Consensus 56 dv~aRg~qegWn~gFT~k~~gWAek~esGer~vIKnPEyFstYM~eeLka 105 (115)
T 2es9_A 56 VVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQEQLKE 105 (115)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCCSSGGGSCHHHHHHHHH
T ss_pred HHHHhcccccCChhHHHHHHHHHHHhccCCeeeecChHHHHHHHHHHHHH
Confidence 3444456779999999987 544332 7999999998877764
No 2
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=81.71 E-value=3 Score=26.77 Aligned_cols=38 Identities=24% Similarity=0.487 Sum_probs=30.7
Q ss_pred HHHHHHHHHH--------HHHHHHhh-CCHHHHHHHHHhhcCCCchhH
Q 034402 6 ASYIHMVQHL--------IEKCLIFR-MTKEECMEALSKHANIKPVIT 44 (95)
Q Consensus 6 ~~~I~~VQ~L--------IErCLqly-Msk~E~v~~L~~~a~I~P~fT 44 (95)
.+.|..|+.| |.+||..| -|-|.||.+|.+. ++.|...
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~-~LPp~L~ 60 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE-RLAPTLS 60 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT-CCCTTTT
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc-CCCHHHH
Confidence 3567777765 89999999 8999999999985 7777653
No 3
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=75.54 E-value=2.8 Score=32.13 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=42.4
Q ss_pred CCCc-hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhh-cCCCchhHHHHHH
Q 034402 1 MGES-SASYIHMVQHLIEKCLIFRMTKEECMEALSKH-ANIKPVITSTVWN 49 (95)
Q Consensus 1 ~~~~-s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~-a~I~P~fT~~VW~ 49 (95)
||.. |..|+..|+++.++.+.++=-++++.++|..+ ..|-|.+|.+|=.
T Consensus 102 ~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~iAPNLtaLvG~ 152 (260)
T 2ozb_B 102 QGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGA 152 (260)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCc
Confidence 5653 78999999999999999999999999999886 4599999988643
No 4
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=74.18 E-value=4.7 Score=25.05 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 034402 24 MTKEECMEALSKHANIKPVITSTVWNELEK 53 (95)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~fT~~VW~~LE~ 53 (95)
||+.|+++.+.++.++.+.-...|++.|-+
T Consensus 1 mtk~eli~~ia~~~~ls~~~~~~~l~~~~~ 30 (90)
T 1b8z_A 1 MNKKELIDRVAKKAGAKKKDVKLILDTILE 30 (90)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 899999999999999988877777765543
No 5
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=72.10 E-value=6.3 Score=24.52 Aligned_cols=29 Identities=10% Similarity=0.237 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 034402 24 MTKEECMEALSKHANIKPVITSTVWNELE 52 (95)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~fT~~VW~~LE 52 (95)
||+.|+++.+.++.++.+.-...|.+.|-
T Consensus 1 m~k~eli~~ia~~~~ls~~~~~~~l~~~~ 29 (90)
T 1mul_A 1 MNKTQLIDVIAEKAELSKTQAKAALESTL 29 (90)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999999998877777666543
No 6
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=69.51 E-value=4.6 Score=31.02 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=41.9
Q ss_pred CCCc-hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcC-CCchhHHHHH
Q 034402 1 MGES-SASYIHMVQHLIEKCLIFRMTKEECMEALSKHAN-IKPVITSTVW 48 (95)
Q Consensus 1 ~~~~-s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~-I~P~fT~~VW 48 (95)
||-. |.+|+..|+.+.++.+.++=.+.++.++|+.+.+ |-|.+|.+|=
T Consensus 88 ~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLvG 137 (255)
T 3icx_A 88 IGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVG 137 (255)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHhc
Confidence 5653 7899999999999999999999999999998655 8999988763
No 7
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=67.01 E-value=8 Score=24.58 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 034402 24 MTKEECMEALSKHANIKPVITSTVWNELEK 53 (95)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~fT~~VW~~LE~ 53 (95)
||+.|+++.+.++.++.+.-...|++.|-+
T Consensus 3 m~k~eli~~ia~~~~ls~~~~~~vl~~~~~ 32 (99)
T 1owf_A 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFE 32 (99)
T ss_dssp BCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 899999999999999998888777766543
No 8
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=66.86 E-value=7.7 Score=24.19 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHH
Q 034402 24 MTKEECMEALSKHANIKPVITSTVWNEL 51 (95)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~fT~~VW~~L 51 (95)
||+.|+++.+.++.++.+.-...|.+.+
T Consensus 1 m~k~eli~~ia~~~~ls~~~~~~~l~~~ 28 (90)
T 2o97_B 1 MNKSQLIDKIAAGADISKAAAGRALDAI 28 (90)
T ss_dssp CBHHHHHHHHHHTTC-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8999999999999988887666666544
No 9
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=66.50 E-value=7.6 Score=24.39 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHH
Q 034402 24 MTKEECMEALSKHANIKPVITSTVWNEL 51 (95)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~fT~~VW~~L 51 (95)
||+.|+++.+.++.++.+.-...|.+.|
T Consensus 1 M~k~eli~~ia~~~~ls~~~~~~~l~~~ 28 (94)
T 1p71_A 1 MNKGELVDAVAEKASVTKKQADAVLTAA 28 (94)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8999999999999888887666666544
No 10
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=65.50 E-value=8 Score=24.64 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 034402 24 MTKEECMEALSKHANIKPVITSTVWNELE 52 (95)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~fT~~VW~~LE 52 (95)
||+.|+++.+.+..++.+.-...|.+.|-
T Consensus 1 Mtk~eLi~~ia~~~~lsk~~~~~~l~~~~ 29 (99)
T 3c4i_A 1 MNKAELIDVLTQKLGSDRRQATAAVENVV 29 (99)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999998888877776666543
No 11
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=65.25 E-value=3.8 Score=28.23 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=36.3
Q ss_pred HHHHHHHhh-CCHHHHHHHHHhhcCCCchhHHHHHHHHHHhcHHHHHHHHHh
Q 034402 15 LIEKCLIFR-MTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYAQS 65 (95)
Q Consensus 15 LIErCLqly-Msk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN~eFFkaY~~~ 65 (95)
-+-|||.-| +++-+-++.+.-+.+ +.+...++..|-.+-.+||+.|.++
T Consensus 71 RnKrcLlAYl~~Rl~kI~~~~w~~g--~~L~~~~~~~LS~~E~~f~~~Y~~l 120 (149)
T 2e9x_A 71 RNRRCTVAYLYDRLLRIRALRWEYG--SVLPNALRFHMAAEEMEWFNNYKRS 120 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--SSCCHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc--ccCChHHHhcCCHHHHHHHHHHHHH
Confidence 346899988 567777777776654 2345667888999999999999554
No 12
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=61.97 E-value=7.4 Score=31.40 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=41.6
Q ss_pred CCCc-hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhc-CCCchhHHHHH
Q 034402 1 MGES-SASYIHMVQHLIEKCLIFRMTKEECMEALSKHA-NIKPVITSTVW 48 (95)
Q Consensus 1 ~~~~-s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a-~I~P~fT~~VW 48 (95)
||.. |..|+..|+.+.++.+.++=.++++.++|..+. .|-|.+|.+|=
T Consensus 222 ~G~~ls~~dl~~i~~~~~~v~~L~~~R~~l~~yl~~rM~~iAPNLsaLvG 271 (376)
T 2nnw_A 222 MGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVG 271 (376)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhC
Confidence 5653 788999999999999999999999999999864 58999988763
No 13
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=59.39 E-value=40 Score=25.79 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=46.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhCCH-------HHHHHHHHhhcCCCchhHHHHHHHHHHhcHHHHHHHH
Q 034402 1 MGESSASYIHMVQHLIEKCLIFRMTK-------EECMEALSKHANIKPVITSTVWNELEKENKEFFEAYA 63 (95)
Q Consensus 1 ~~~~s~~~I~~VQ~LIErCLqlyMsk-------~E~v~~L~~~a~I~P~fT~~VW~~LE~eN~eFFkaY~ 63 (95)
|+.-|.+-++.|-..+++||....+. +.+++-| + ++++..-..|...|++.+|++.+.=.
T Consensus 112 l~~v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~IL-N--~~d~~~e~~iL~~L~~~dpelAe~Ir 178 (279)
T 3pkr_A 112 LGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIF-N--RLGQKSAKTTLARIESVDNKLAGAIK 178 (279)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHHH-H--TSCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccccccccCcHHHHHHHH-H--cCChHHHHHHHHHHHhhCHHHHHHHH
Confidence 45668899999999999999987654 3344444 3 56777778999999999999988753
No 14
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=59.31 E-value=8.4 Score=24.60 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 034402 24 MTKEECMEALSKHANIKPVITSTVWNELE 52 (95)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~fT~~VW~~LE 52 (95)
||+.|+++.+.+..++.+.-...|.+.|-
T Consensus 1 Mtk~eLi~~ia~~~~lsk~~~~~~l~~~~ 29 (99)
T 1exe_A 1 MNKTELIKAIAQDTGLTQVSVSKMLASFE 29 (99)
T ss_dssp CCTTHHHHHHHHHHCSCCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999999999887777776543
No 15
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=58.08 E-value=15 Score=22.91 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHhh-cCCCchhHHHHHHHH
Q 034402 24 MTKEECMEALSKH-ANIKPVITSTVWNEL 51 (95)
Q Consensus 24 Msk~E~v~~L~~~-a~I~P~fT~~VW~~L 51 (95)
||+.|+++.+.+. .++.+.-...|.+.|
T Consensus 1 Mtk~eli~~ia~~~~~ls~~~~~~~l~~~ 29 (94)
T 1owf_B 1 MTKSELIERLATQQSHIPAKTVEDAVKEM 29 (94)
T ss_dssp CBHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 8999999999998 588887666666544
No 16
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=58.03 E-value=8.5 Score=24.25 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=19.5
Q ss_pred hCCHHHHHHHHHhhcCCCchhHHHHHHHH
Q 034402 23 RMTKEECMEALSKHANIKPVITSTVWNEL 51 (95)
Q Consensus 23 yMsk~E~v~~L~~~a~I~P~fT~~VW~~L 51 (95)
-||+.|+++.+.++.++...-...|.+.+
T Consensus 3 ~mtk~eLi~~ia~~~~lsk~~~~~~v~~~ 31 (93)
T 3rhi_A 3 AMNKTELIKNVAQNAEISQKEATVVVQTV 31 (93)
T ss_dssp ----CHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 38999999999998888877666665544
No 17
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=57.22 E-value=9.9 Score=30.93 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=43.5
Q ss_pred CCCc-hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcC-CCchhHHHHHHHH
Q 034402 1 MGES-SASYIHMVQHLIEKCLIFRMTKEECMEALSKHAN-IKPVITSTVWNEL 51 (95)
Q Consensus 1 ~~~~-s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~-I~P~fT~~VW~~L 51 (95)
||-. |.+|+..|+.+.++.+.++=.+.++.++|+.+.+ |-|.+|.+|=..+
T Consensus 221 mG~~ls~~dl~~I~~~~~~v~~L~e~R~~L~~Yl~srM~~iAPNLsaLvG~~v 273 (388)
T 3pla_A 221 IGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPAL 273 (388)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHhccHH
Confidence 5653 7899999999999999999999999999998655 9999998775443
No 18
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=55.37 E-value=5.8 Score=24.87 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=28.5
Q ss_pred HHHHHhcHHHHHHHHHhhhHHhhhhHHHHHHHHHHHH
Q 034402 49 NELEKENKEFFEAYAQSQSKEDRMSEEETNQMIQKMI 85 (95)
Q Consensus 49 ~~LE~eN~eFFkaY~~~~lk~qi~s~~~~~~~iq~~~ 85 (95)
++|.++||+-++-|..+ ...++++++++=.--..++
T Consensus 20 ~rlL~eN~~L~qLyk~L-V~s~vIse~eFW~~r~~ll 55 (61)
T 2dii_A 20 NRMLQEDPVLFQLYKDL-VVSQVISAEEFWANRLNVN 55 (61)
T ss_dssp HHHHHHCHHHHHHHHHH-HTTTSSCHHHHHHHHCSSC
T ss_pred HHHHHhCHHHHHHHHHH-HHhCcCCHHHHHHHHHHhh
Confidence 56788999999999888 4488999999876655544
No 19
>3doe_B ADP-ribosylation factor-like protein 2-binding protein; binder of ARL2, small GTPase, effector, complex structure, GTP-binding, lipoprotein; HET: GTP; 2.25A {Homo sapiens} PDB: 3dof_B* 2k9a_A 2k0s_A
Probab=49.16 E-value=13 Score=27.00 Aligned_cols=45 Identities=22% Similarity=0.405 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHh---hCCHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 034402 6 ASYIHMVQHLIEKCLIF---RMTKEECMEALSKHANIKPVITSTVWNELEK 53 (95)
Q Consensus 6 ~~~I~~VQ~LIErCLql---yMsk~E~v~~L~~~a~I~P~fT~~VW~~LE~ 53 (95)
.+|+.+|-.+||.-|.- ..|.++++.+|+++ ...+...||+.|-.
T Consensus 69 ~eY~~LVE~~Le~~L~e~i~Gfsme~F~~~l~~~---~~e~~~dIfe~Lla 116 (165)
T 3doe_B 69 NEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHH---KDEVAGDIFDMLLT 116 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHTTT---CC--CCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhc---chhhHHHHHHHHHH
Confidence 46788888888888877 77999999999875 34566666665544
No 20
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=45.24 E-value=67 Score=24.99 Aligned_cols=61 Identities=10% Similarity=0.148 Sum_probs=45.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhCCHH-------HHHHHHHhhcCCCchhHHHHHHHHHHhcHHHHHHHH
Q 034402 1 MGESSASYIHMVQHLIEKCLIFRMTKE-------ECMEALSKHANIKPVITSTVWNELEKENKEFFEAYA 63 (95)
Q Consensus 1 ~~~~s~~~I~~VQ~LIErCLqlyMsk~-------E~v~~L~~~a~I~P~fT~~VW~~LE~eN~eFFkaY~ 63 (95)
|+.-|.+-++.|-..+++||.-..+.+ +.+-.+.+ ++++..-..|...|++.+|++.+.=.
T Consensus 167 l~~v~p~~l~~le~~L~~~l~~~~~~~~~~~gG~~~vA~ILN--~~d~~~e~~il~~L~~~dpela~~Ir 234 (329)
T 3hjl_A 167 LENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLN--TLDKETRELILQSIGQEDPLLEERIR 234 (329)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH--HSCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHh--cCChHHHHHHHHHHHHhCHHHHHHHH
Confidence 466688999999999999998764332 33333333 46677777899999999999988763
No 21
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=44.55 E-value=22 Score=22.93 Aligned_cols=29 Identities=10% Similarity=0.226 Sum_probs=23.2
Q ss_pred CCHHHHHHHHH-----hhcCCCchhHHHHHHHHH
Q 034402 24 MTKEECMEALS-----KHANIKPVITSTVWNELE 52 (95)
Q Consensus 24 Msk~E~v~~L~-----~~a~I~P~fT~~VW~~LE 52 (95)
||+.|+++.+. ++.++.+.-...|.+.|-
T Consensus 9 mtk~eLi~~ia~~~~~~~~~lsk~~~~~vl~~~~ 42 (108)
T 2np2_A 9 VTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFF 42 (108)
T ss_dssp EEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHH
Confidence 89999999999 788888877776666543
No 22
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=44.19 E-value=36 Score=19.60 Aligned_cols=35 Identities=9% Similarity=0.123 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHh
Q 034402 13 QHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKE 54 (95)
Q Consensus 13 Q~LIErCLqlyMsk~E~v~~L~~~a~I~P~fT~~VW~~LE~e 54 (95)
..+|++.|..+-|+.++.+.| ||.+. ++|.+|.+-
T Consensus 23 r~~I~~aL~~~gn~~~aA~~L----GIsr~---tL~rklkk~ 57 (61)
T 1g2h_A 23 AQVLKLFYAEYPSTRKLAQRL----GVSHT---AIANKLKQY 57 (61)
T ss_dssp HHHHHHHHHHSCSHHHHHHHT----TSCTH---HHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHh----CCCHH---HHHHHHHHh
Confidence 455666666666777776655 99885 889988763
No 23
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=42.19 E-value=78 Score=23.07 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=42.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhCCHHH-------HHHHHHhhcCCCchhHHHHHHHHHHhcHHHHHHH
Q 034402 1 MGESSASYIHMVQHLIEKCLIFRMTKEE-------CMEALSKHANIKPVITSTVWNELEKENKEFFEAY 62 (95)
Q Consensus 1 ~~~~s~~~I~~VQ~LIErCLqlyMsk~E-------~v~~L~~~a~I~P~fT~~VW~~LE~eN~eFFkaY 62 (95)
|+.-|.+-++.|-..+++||....+..- .+-.+.+ +.++..-..|...|++.+|++.+.=
T Consensus 54 l~~v~p~~~~~l~~~L~~~l~~~~~~~~~~~gG~~~~A~IlN--~~~~~~e~~il~~L~~~d~ela~~I 120 (216)
T 4fhr_B 54 LERTSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMN--NLDRTTEKKIMDKLVQENPELADEI 120 (216)
T ss_dssp CCCCCHHHHHHHHHHHHHHSTTCC-------CSHHHHHHHHH--HSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHhcccccccccCCcHHHHHHHHH--cCChhHHHHHHHHHHhcCHHHHHHH
Confidence 4556788899999999999987766531 1222223 3567777889999999999998776
No 24
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=42.14 E-value=15 Score=28.74 Aligned_cols=28 Identities=18% Similarity=0.535 Sum_probs=23.5
Q ss_pred cCCCchhHHHHHHHHHHhcHHHHHHHHHhh
Q 034402 37 ANIKPVITSTVWNELEKENKEFFEAYAQSQ 66 (95)
Q Consensus 37 a~I~P~fT~~VW~~LE~eN~eFFkaY~~~~ 66 (95)
.|.-|.+ +||++...=||+|+|.|-.+.
T Consensus 168 ~G~~pe~--tvw~qv~~i~~~iyKLyeEL~ 195 (290)
T 3c18_A 168 KGAHPEV--VVWEQARLDDPDVYKLYEQLL 195 (290)
T ss_dssp TTCCCCT--THHHHHHHHCHHHHHHHHHHH
T ss_pred cCCcCch--hHHHHHHhcCHHHHHHHHHHh
Confidence 4777776 599999999999999996554
No 25
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=40.95 E-value=14 Score=26.34 Aligned_cols=49 Identities=16% Similarity=0.294 Sum_probs=35.6
Q ss_pred HHHHHHHhh-CCHHHHHHHHHhhcCCCchhHHHHHHHHHHhcHHHHHHHHHh
Q 034402 15 LIEKCLIFR-MTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYAQS 65 (95)
Q Consensus 15 LIErCLqly-Msk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN~eFFkaY~~~ 65 (95)
-+.|||.-| .++-+-++.+.-+.+ +.....++..|-.+-.+||+.|..+
T Consensus 71 R~Kr~l~aYlr~Rl~KI~~~~w~~~--~~l~~~~~~~LS~~E~~y~~~y~~l 120 (196)
T 2q9q_C 71 RNRRCTVAYLYDRLLRIRALRWEYG--SILPNALRFHMAAEEMEWFNNYKRS 120 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC--SSCCHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--ccCCHHHHhhCCHHHHHHHHHHHHH
Confidence 346899988 567777777766644 3333556888888999999999554
No 26
>3qom_A 6-phospho-beta-glucosidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, glycoside hydrolase, hydrolase; HET: BGC; 1.50A {Lactobacillus plantarum} SCOP: c.1.8.0 PDB: 4gze_A
Probab=39.59 E-value=16 Score=29.77 Aligned_cols=46 Identities=24% Similarity=0.470 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCCchhHHHHH---HHHHH--------hcHHHHHHHHHh
Q 034402 5 SASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVW---NELEK--------ENKEFFEAYAQS 65 (95)
Q Consensus 5 s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~I~P~fT~~VW---~~LE~--------eN~eFFkaY~~~ 65 (95)
..+-++.-.+||..|+.. ||+|.+|..=| +.|++ +..++|..|.+.
T Consensus 110 N~~Gl~fY~~lid~l~~~---------------GIeP~VTL~H~DlP~~L~~~yGGW~nr~~v~~F~~YA~~ 166 (481)
T 3qom_A 110 NEAGLQFYDDLFDECLKN---------------GIQPVVTLAHFEMPYHLVKQYGGWRNRKLIQFYLNFAKV 166 (481)
T ss_dssp CHHHHHHHHHHHHHHHHT---------------TCEEEEEEESSCCBHHHHHHHCGGGSTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHC---------------CCeEEEEEccCCCCHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 345566666777766554 99999998655 35544 346788888554
No 27
>4a3y_A Raucaffricine-O-beta-D-glucosidase; hydrolase, alkaloid; 2.15A {Rauvolfia serpentina} PDB: 3u5u_A 3u57_A 3u5y_A*
Probab=37.96 E-value=16 Score=29.99 Aligned_cols=47 Identities=30% Similarity=0.395 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCCchhHHHHH---HHHH--------HhcHHHHHHHHHhh
Q 034402 5 SASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVW---NELE--------KENKEFFEAYAQSQ 66 (95)
Q Consensus 5 s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~I~P~fT~~VW---~~LE--------~eN~eFFkaY~~~~ 66 (95)
..+-|+.=.+||..|+. .||+|.+|..=| +-|+ ++..++|..|.+..
T Consensus 113 N~~Gl~fY~~lid~l~~---------------~GIeP~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~Ya~~~ 170 (540)
T 4a3y_A 113 NKEGINYYNNLIDGLLA---------------NGIKPFVTLFHWDVPQALEDEYGGFLSPRIVDDFCEYAELC 170 (540)
T ss_dssp CHHHHHHHHHHHHHHHH---------------TTCEEEEEEESSCCBHHHHHHHCGGGSTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---------------cCCccceeccCCCCcHHHHhccCCcCChHHHHHHHHHHHHH
Confidence 34445555666666654 399999987544 2344 35778899995543
No 28
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=37.65 E-value=62 Score=20.86 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=29.7
Q ss_pred CchHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcC
Q 034402 3 ESSASYIHMVQHLIEKCLIFRMTKEECMEALSKHAN 38 (95)
Q Consensus 3 ~~s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~ 38 (95)
||.+....-...+|-+=|.--.|++||+++|-.+.|
T Consensus 39 dSna~iA~dlR~~V~~~l~~G~sd~eI~~~~v~RYG 74 (84)
T 2hl7_A 39 DSNAPIAADLRKQIYGQLQQGKSDGEIVDYMVARYG 74 (84)
T ss_dssp TCCSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 455666666778888889999999999999988776
No 29
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=37.26 E-value=99 Score=22.20 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 034402 24 MTKEECMEALSKHANIKPVITSTVWNELEK 53 (95)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~fT~~VW~~LE~ 53 (95)
||+.|+++.+.+..++.+.-...|.+.|-+
T Consensus 47 Mtk~eLi~~ia~~~~lsk~da~~vl~~l~~ 76 (204)
T 2iie_A 47 LTKAEMSEYLFDKLGLSKRDAKELVELFFE 76 (204)
T ss_dssp BCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999988877777765543
No 30
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=36.86 E-value=45 Score=20.38 Aligned_cols=23 Identities=13% Similarity=0.456 Sum_probs=21.1
Q ss_pred CchhHHHHHHHHHHhcHHHHHHH
Q 034402 40 KPVITSTVWNELEKENKEFFEAY 62 (95)
Q Consensus 40 ~P~fT~~VW~~LE~eN~eFFkaY 62 (95)
+|..-..+.+.|.+.||+.++..
T Consensus 23 NP~~L~~lLqql~~~nP~l~~~I 45 (61)
T 2f4m_B 23 NPSLLPALLQQIGRENPQLLQQI 45 (61)
T ss_dssp CGGGHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHhHCHHHHHHH
Confidence 79999999999999999998765
No 31
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=36.75 E-value=60 Score=21.44 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=26.7
Q ss_pred HHhhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 034402 20 LIFRMTKEECMEALSKHANIKPVITSTVWNELEKEN 55 (95)
Q Consensus 20 LqlyMsk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN 55 (95)
+.+.+|++++...| |+.|.--+-+.++|++++
T Consensus 172 ~~~~~t~~~iA~~l----g~sr~tvsR~l~~L~~~g 203 (231)
T 3e97_A 172 EVLPLGTQDIMART----SSSRETVSRVLKRLEAHN 203 (231)
T ss_dssp TEECCCHHHHHHHH----TCCHHHHHHHHHHHHHTT
T ss_pred EecCCCHHHHHHHh----CCcHHHHHHHHHHHHHCC
Confidence 45678888888777 999999999999999864
No 32
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=34.52 E-value=1.1e+02 Score=21.11 Aligned_cols=67 Identities=13% Similarity=0.247 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhC--------------CHHHHHHHHHhhcCCCchhHHHHHHHHHHhcHHHHHHHH-HhhhHHhhhh
Q 034402 9 IHMVQHLIEKCLIFRM--------------TKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYA-QSQSKEDRMS 73 (95)
Q Consensus 9 I~~VQ~LIErCLqlyM--------------sk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN~eFFkaY~-~~~lk~qi~s 73 (95)
......||-+||.-+. ...+++.+|.. |=.+|++.++.+|+.+. ++.+... ..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Lr~-----------vgdele~~~~~~f~~m~~~L~it~~-~a 72 (157)
T 4hw4_A 5 YRQSLEIISRYLREQATGAKDTKPMGRSGATSRKALETLRR-----------VGDGVQRNHETAFQGMLRKLDIKNE-DD 72 (157)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCSCCCSSHHHHHHHHHHHHH-----------HHHHHHHHTHHHHHHHHHHHCCCSH-HH
T ss_pred HHHHHHHHHHHHHHHhcCccccCCCCCCCCchHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhcCCCCc-hH
Confidence 4566778888888776 34566666644 45789999999999994 3433322 22
Q ss_pred HHHHHHHHHHHHhh
Q 034402 74 EEETNQMIQKMIST 87 (95)
Q Consensus 74 ~~~~~~~iq~~~~~ 87 (95)
-+.+.+...++.++
T Consensus 73 ~~~F~~Va~elF~d 86 (157)
T 4hw4_A 73 VKSLSRVMIHVFSD 86 (157)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhcc
Confidence 23355555555544
No 33
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=32.28 E-value=82 Score=20.66 Aligned_cols=36 Identities=8% Similarity=0.081 Sum_probs=29.8
Q ss_pred CchHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcC
Q 034402 3 ESSASYIHMVQHLIEKCLIFRMTKEECMEALSKHAN 38 (95)
Q Consensus 3 ~~s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~ 38 (95)
||.+....-...+|-+=|.--.|.+||+++|-.++|
T Consensus 36 dSnA~iA~dlR~~Vre~l~~G~Sd~eI~~~mv~RYG 71 (90)
T 2kw0_A 36 DSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYG 71 (90)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 555666666778888889999999999999988876
No 34
>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A {Halothermothrix orenii}
Probab=32.09 E-value=29 Score=28.08 Aligned_cols=37 Identities=35% Similarity=0.717 Sum_probs=23.1
Q ss_pred HHHHHHHhhcCCCchhHHHHH---HHHH-------HhcHHHHHHHHHh
Q 034402 28 ECMEALSKHANIKPVITSTVW---NELE-------KENKEFFEAYAQS 65 (95)
Q Consensus 28 E~v~~L~~~a~I~P~fT~~VW---~~LE-------~eN~eFFkaY~~~ 65 (95)
.+++.|.+ .||+|.+|..=| +.|+ .+..++|..|.+.
T Consensus 110 ~lid~l~~-~GIeP~vTL~H~dlP~~L~~~GGW~nr~~v~~F~~YA~~ 156 (458)
T 3ta9_A 110 RLVDNLLK-ANIRPMITLYHWDLPQALQDKGGWTNRDTAKYFAEYARL 156 (458)
T ss_dssp HHHHHHHH-TTCEEEEEEESSCCBHHHHTTTGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCeEEEEecCCCCCHhHHhcCCCCCHHHHHHHHHHHHH
Confidence 34444433 499999998544 2344 3556788888553
No 35
>2kua_A BCL-2-like protein 10; BOO, DIVA, apoptosis, BH3-only, membrane, mitochondri nucleus, transmembrane; NMR {Mus musculus}
Probab=31.90 E-value=72 Score=22.48 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=14.7
Q ss_pred HHHHHHHhcHHHHHHHH
Q 034402 47 VWNELEKENKEFFEAYA 63 (95)
Q Consensus 47 VW~~LE~eN~eFFkaY~ 63 (95)
|=.+|++.++.||+.+.
T Consensus 50 v~~ele~~~~~~f~~~~ 66 (170)
T 2kua_A 50 VTRQIQQEHQEFFSSFC 66 (170)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 45789999999999996
No 36
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=31.70 E-value=53 Score=20.31 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=20.1
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhc
Q 034402 31 EALSKHANIKPVITSTVWNELEKEN 55 (95)
Q Consensus 31 ~~L~~~a~I~P~fT~~VW~~LE~eN 55 (95)
..|.++++|.|..-....++|+++.
T Consensus 20 ~eLa~~l~VS~~TIRrdL~~Le~~G 44 (78)
T 1xn7_A 20 AQISQTLNTPQPMINAMLQQLESMG 44 (78)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3466677999999999999998865
No 37
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=31.36 E-value=10 Score=28.29 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=0.0
Q ss_pred HhcHHHHHHHH
Q 034402 53 KENKEFFEAYA 63 (95)
Q Consensus 53 ~eN~eFFkaY~ 63 (95)
.+|||||.-+-
T Consensus 41 ~~~PdFf~~~~ 51 (252)
T 3e98_A 41 SQHPEFFVEHD 51 (252)
T ss_dssp -----------
T ss_pred HhCCHHHhhCH
Confidence 57899998883
No 38
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=31.29 E-value=1e+02 Score=21.33 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCCch
Q 034402 5 SASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPV 42 (95)
Q Consensus 5 s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~I~P~ 42 (95)
|.+....|..||..++-.-++-||--..|++..|-.|-
T Consensus 39 spev~~~Vr~LVq~Ll~~~i~~EeFt~~Lq~~lns~pq 76 (114)
T 2p6v_A 39 STETAANVXELVQNLLDGXIEAEDFTSRLYRELNSSPQ 76 (114)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCCCC
T ss_pred ChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHcCCCC
Confidence 67888999999999999999999999999996665553
No 39
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET: BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A* 3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A* 3vij_A* 3vik_A* 3vil_A*
Probab=31.06 E-value=21 Score=29.13 Aligned_cols=46 Identities=26% Similarity=0.444 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCCchhHHHHHH---HHHH-------hcHHHHHHHHHhh
Q 034402 6 ASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWN---ELEK-------ENKEFFEAYAQSQ 66 (95)
Q Consensus 6 ~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~I~P~fT~~VW~---~LE~-------eN~eFFkaY~~~~ 66 (95)
.+-|+.-.+||..|+. .||+|.+|..=|. .|++ +..++|..|.+..
T Consensus 103 ~~Gl~fY~~lId~Ll~---------------~GIeP~VTL~H~DlP~~L~~~GGW~nr~~v~~F~~YA~~~ 158 (487)
T 3vii_A 103 QDGIDYYNNLINELLA---------------NGIEPMVTMYHWDLPQALQDLGGWPNLVLAKYSENYARVL 158 (487)
T ss_dssp HHHHHHHHHHHHHHHH---------------TTCEEEEEEESSCCBHHHHTTTSTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------------CCCEEEEEEecCCCcHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4445555666666654 4999999986552 3443 5678898885543
No 40
>4dde_A 6-phospho-beta-glucosidase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: BG6; 1.45A {Streptococcus mutans} PDB: 3pn8_A* 4f66_A* 4gpn_A* 4f79_A*
Probab=30.36 E-value=28 Score=28.35 Aligned_cols=46 Identities=24% Similarity=0.542 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCCchhHHHHH---HHHHH--------hcHHHHHHHHHh
Q 034402 5 SASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVW---NELEK--------ENKEFFEAYAQS 65 (95)
Q Consensus 5 s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~I~P~fT~~VW---~~LE~--------eN~eFFkaY~~~ 65 (95)
..+-++.-.+||..|+.. ||+|.+|..=| +.|++ +..++|..|.+.
T Consensus 106 N~~Gl~fY~~lid~l~~~---------------GIeP~VTL~H~DlP~~L~~~yGGW~nr~~v~~F~~YA~~ 162 (480)
T 4dde_A 106 NEAGLQFYDDLFDECLKY---------------GIEPVVTLSHFELPYHLVTEYGGFTNRKVIDFFVHFAEV 162 (480)
T ss_dssp CHHHHHHHHHHHHHHHHT---------------TCEEEEEEESSCCBHHHHHHHCGGGSTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHC---------------CCcceEEeeCCCCcHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 345566667777776654 99999998655 34544 346678888554
No 41
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=29.72 E-value=47 Score=21.01 Aligned_cols=25 Identities=12% Similarity=0.404 Sum_probs=21.8
Q ss_pred CCCchhHHHHHHHHHHhcHHHHHHH
Q 034402 38 NIKPVITSTVWNELEKENKEFFEAY 62 (95)
Q Consensus 38 ~I~P~fT~~VW~~LE~eN~eFFkaY 62 (95)
.=+|..-..|.+.|.+.||+.++..
T Consensus 23 qqNP~lL~~lLqqL~~~NPqL~q~I 47 (72)
T 1pve_A 23 QQNPSLLPALLQQIGRENPQLLQQI 47 (72)
T ss_dssp TTCGGGHHHHHHHHHTTCHHHHHHH
T ss_pred HHCHHHHHHHHHHHHhHCHHHHHHH
Confidence 3389999999999999999998765
No 42
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=29.30 E-value=63 Score=21.15 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=24.5
Q ss_pred HHhhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 034402 20 LIFRMTKEECMEALSKHANIKPVITSTVWNELEKEN 55 (95)
Q Consensus 20 LqlyMsk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN 55 (95)
+.+.+|++++...| |+.|.--+-+.++|+++.
T Consensus 175 ~~~~~t~~~lA~~l----g~sr~tvsR~l~~l~~~g 206 (227)
T 3dkw_A 175 VEIPVAKQLVAGHL----SIQPETFSRIMHRLGDEG 206 (227)
T ss_dssp CCCCSCTHHHHHHT----TSCHHHHHHHHHHHHHHT
T ss_pred EEecCCHHHHHHHh----CCCHHHHHHHHHHHHHCC
Confidence 34567777776665 999999999999998864
No 43
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=29.16 E-value=1.1e+02 Score=19.34 Aligned_cols=47 Identities=17% Similarity=0.393 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHHHHHHH-hh-CCHHHHHHHHHhhcCCCchhHHHHHHHHHHh
Q 034402 4 SSASYIHMVQHLIEKCLI-FR-MTKEECMEALSKHANIKPVITSTVWNELEKE 54 (95)
Q Consensus 4 ~s~~~I~~VQ~LIErCLq-ly-Msk~E~v~~L~~~a~I~P~fT~~VW~~LE~e 54 (95)
++..|+.+=.-||..|+. -. ++++++-.. ++|+|.-+.-||.-|.+.
T Consensus 37 ~P~~YL~~K~~Li~E~~k~g~~lkk~da~~~----~kiD~~K~~~iydf~~~~ 85 (88)
T 2elj_A 37 LPKPYLVLKEVMFRELLKTGGNLSKSACREL----LNIDPIKANRIYDFFQSQ 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSCCCHHHHHHH----TTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccHHHHHHH----HcccHHHHHHHHHHHHHc
Confidence 467788888889999986 35 777766554 489999999999887764
No 44
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=28.91 E-value=87 Score=20.54 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=26.3
Q ss_pred HHhhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 034402 20 LIFRMTKEECMEALSKHANIKPVITSTVWNELEKEN 55 (95)
Q Consensus 20 LqlyMsk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN 55 (95)
+.+.+|++++...| |+.|.--+-+.++|++++
T Consensus 164 ~~~~~t~~~lA~~l----g~sr~tvsR~l~~l~~~g 195 (220)
T 2fmy_A 164 LELGLNTEEIALML----GTTRQTVSVLLNDFKKMG 195 (220)
T ss_dssp EECSSCHHHHHHHH----TSCHHHHHHHHHHHHHTT
T ss_pred EeccCCHHHHHHHh----CCcHHHHHHHHHHHHHCC
Confidence 34578888888777 999999999999998864
No 45
>2q0t_A Putative gamma-carboxymuconolactone decarboxylase; AHPD-like fold, structural genomics, joint center for struct genomics, JCSG; 1.70A {Burkholderia xenovorans} SCOP: a.152.1.1
Probab=28.84 E-value=1.6e+02 Score=20.98 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHHHHhcHHHHHHHHHhhhHHhhh----hHHHHHHHHHHHHh
Q 034402 24 MTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYAQSQSKEDRM----SEEETNQMIQKMIS 86 (95)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN~eFFkaY~~~~lk~qi~----s~~~~~~~iq~~~~ 86 (95)
+...++.+.+.++.|.-|. .|..+.+..|+|+++|..+ -..+. -...+.++|.--++
T Consensus 9 ~~~~~~~~~~~~~~G~~~~----~~~~~~~~~P~~~~~~~~~--~~~~~~~~~L~~~~reLi~la~~ 69 (263)
T 2q0t_A 9 PDPSRLRDELVRLHGKASP----EWDSLVRLDPRFVDAYLKF--AGVPQRRNHLDDKTRAFIALAAD 69 (263)
T ss_dssp CCHHHHHHHHHHHHSSCCH----HHHHHHHHCHHHHHHHHHH--HHHHHHHCSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcchhH----HHHHHHHhCHHHHHHHHHH--HHHHhcCCCCCHHHHHHHHHHHH
Confidence 4567788888888886443 5677888999999999543 22222 34566666654333
No 46
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=28.69 E-value=1.3e+02 Score=20.03 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhh-------CCHHHHHHHHHhhcCCCchhHHHHHHHHHHhcHHHHHHHHH
Q 034402 10 HMVQHLIEKCLIFR-------MTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYAQ 64 (95)
Q Consensus 10 ~~VQ~LIErCLqly-------Msk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN~eFFkaY~~ 64 (95)
.+|.+-|.-||+.- -...++..+|.. +=.+||+.++.+|+...+
T Consensus 5 ~L~~dyi~~~l~~~g~~~~~~~~p~~~~~~Lr~-----------~gdele~~~~~~f~~~~~ 55 (144)
T 2w3l_A 5 EIVMKYIHYKLSQRGYEWDAGADSEVVHKTLRE-----------AGDDFSRRYRRDFAEMSS 55 (144)
T ss_dssp HHHHHHHHHHHHHTTCCCCC---CHHHHHHHHH-----------HHHHHHHHTHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCCcCCCcccHHHHHHHH-----------HHHHHHHHhHHHHHHHHH
Confidence 35666666666532 122344444433 338899999999999943
No 47
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=28.54 E-value=50 Score=21.87 Aligned_cols=32 Identities=31% Similarity=0.261 Sum_probs=26.2
Q ss_pred HHhhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 034402 20 LIFRMTKEECMEALSKHANIKPVITSTVWNELEKEN 55 (95)
Q Consensus 20 LqlyMsk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN 55 (95)
+.+.+|++++...| |+.|.--+-+.++|++++
T Consensus 160 ~~~~~t~~~lA~~l----G~sr~tvsR~l~~L~~~g 191 (222)
T 1ft9_A 160 VSVDFTVEEIANLI----GSSRQTTSTALNSLIKEG 191 (222)
T ss_dssp CEECCCHHHHHHHH----CSCHHHHHHHHHHHHHTT
T ss_pred EeccCCHHHHHHHh----CCcHHHHHHHHHHHHHCC
Confidence 34568888888777 999999999999998865
No 48
>1gnx_A Beta-glucosidase; hydrolase, glycosyltransferase, family 1 of glycosyl hydrolase; HET: SUC; 1.68A {Streptomyces SP} SCOP: c.1.8.4 PDB: 1gon_A
Probab=27.22 E-value=34 Score=27.71 Aligned_cols=46 Identities=30% Similarity=0.473 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCCchhHHHHH---HHHH-------HhcHHHHHHHHHh
Q 034402 5 SASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVW---NELE-------KENKEFFEAYAQS 65 (95)
Q Consensus 5 s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~I~P~fT~~VW---~~LE-------~eN~eFFkaY~~~ 65 (95)
....++...++|+.|+. .||+|.+|..=| +-|+ ++..++|..|-+.
T Consensus 106 n~~gl~~Y~~lid~l~~---------------~GI~p~vtL~H~d~P~~L~~~GGw~~r~~v~~F~~ya~~ 161 (479)
T 1gnx_A 106 LQKGLDFYRRLADELLA---------------KGIQPVATLYHWDLPQELENAGGWPERATAERFAEYAAI 161 (479)
T ss_dssp CHHHHHHHHHHHHHHHH---------------TTCEEEEEEESSCCBHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---------------cCCEEEEEeCCCcccHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 34556666666666654 399998887432 1243 3567888888543
No 49
>4hz8_A Beta-glucosidase; BGLB,BGL, hydrolase, glycosid barrel, carbohydrate/sugar binding; HET: BGC; 1.14A {Uncultured bacterium} PDB: 4hz7_A* 4hz6_A* 3fj0_A* 3cmj_A 3fiz_A* 3fiy_A*
Probab=27.00 E-value=33 Score=27.67 Aligned_cols=38 Identities=29% Similarity=0.509 Sum_probs=23.6
Q ss_pred HHHHHHHHhhcCCCchhHHHHH---HHHH-------HhcHHHHHHHHHh
Q 034402 27 EECMEALSKHANIKPVITSTVW---NELE-------KENKEFFEAYAQS 65 (95)
Q Consensus 27 ~E~v~~L~~~a~I~P~fT~~VW---~~LE-------~eN~eFFkaY~~~ 65 (95)
+.+|+.|.+ +||+|.+|..=| +.|+ .+..++|..|.+.
T Consensus 101 ~~lid~l~~-~GI~p~vtL~H~dlP~~L~~~GGW~nr~~v~~F~~Ya~~ 148 (444)
T 4hz8_A 101 RRLVEGLHK-RDILPMATLYHWDLPQWVEDEGGWLSRESASRFAEYTHA 148 (444)
T ss_dssp HHHHHHHHH-TTCEEEEEEESSCCBHHHHHTTGGGSTHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCEEEEEeCCCCCCHHHhhCcCCCChHHHHHHHHHHHH
Confidence 345555544 499999987433 1344 4556788888543
No 50
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=26.81 E-value=62 Score=22.49 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHH----hhCCHHHHHHHHHh
Q 034402 7 SYIHMVQHLIEKCLI----FRMTKEECMEALSK 35 (95)
Q Consensus 7 ~~I~~VQ~LIErCLq----lyMsk~E~v~~L~~ 35 (95)
.....+.+||.+||+ ...|-+|+++.|.+
T Consensus 301 ~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~ 333 (342)
T 1b6c_B 301 EALRVMAKIMRECWYANGAARLTALRIKKTLSQ 333 (342)
T ss_dssp HHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccChhhCCCHHHHHHHHHH
Confidence 455678999999995 45677788777754
No 51
>1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A {Ovis aries} SCOP: d.6.1.1
Probab=26.69 E-value=38 Score=23.67 Aligned_cols=21 Identities=14% Similarity=0.420 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHH-HHHHhhCC
Q 034402 5 SASYIHMVQHLIE-KCLIFRMT 25 (95)
Q Consensus 5 s~~~I~~VQ~LIE-rCLqlyMs 25 (95)
+..+++.+..||+ .|.+.||-
T Consensus 89 te~e~rvl~rvi~emC~~qy~~ 110 (121)
T 1tpx_A 89 TETDIKIMERVVEQMCITQYQR 110 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888887 79888873
No 52
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=26.41 E-value=1.5e+02 Score=19.96 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=25.9
Q ss_pred HhhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 034402 21 IFRMTKEECMEALSKHANIKPVITSTVWNELEKEN 55 (95)
Q Consensus 21 qlyMsk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN 55 (95)
.+.+|++++...| |+.|.-.+-+.++|++++
T Consensus 191 ~~~lt~~~lA~~l----G~sr~tvsR~l~~L~~~G 221 (243)
T 3la7_A 191 DLKLSHQAIAEAI----GSTRVTVTRLLGDLREKK 221 (243)
T ss_dssp CSCCCHHHHHHHH----TCCHHHHHHHHHHHHHTT
T ss_pred eccCCHHHHHHHH----CCcHHHHHHHHHHHHHCC
Confidence 3568888888777 999999999999998864
No 53
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=26.23 E-value=76 Score=20.39 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=24.2
Q ss_pred HhhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 034402 21 IFRMTKEECMEALSKHANIKPVITSTVWNELEKEN 55 (95)
Q Consensus 21 qlyMsk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN 55 (95)
.+.+|++++...| |+.|.--+-+.++|+++.
T Consensus 162 ~~~~t~~~lA~~l----g~sr~tvsR~l~~l~~~g 192 (207)
T 2oz6_A 162 QIKITRQEIGRIV----GCSREMVGRVLKSLEEQG 192 (207)
T ss_dssp EEECCHHHHHHHH----TSCHHHHHHHHHHHHHTT
T ss_pred ecccCHHHHHHHh----CCCHHHHHHHHHHHHHCC
Confidence 3467878777776 899988888888888764
No 54
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=26.15 E-value=86 Score=21.44 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=22.4
Q ss_pred HHHHHHHhcHHHHHHHHH-hhhHHhhhhHHHHHHHHHHHHhh
Q 034402 47 VWNELEKENKEFFEAYAQ-SQSKEDRMSEEETNQMIQKMIST 87 (95)
Q Consensus 47 VW~~LE~eN~eFFkaY~~-~~lk~qi~s~~~~~~~iq~~~~~ 87 (95)
|=.+|+++++++|+.+.+ +.+.....+..-+.+...++.++
T Consensus 45 ~~~ele~~~~~~f~~~~~~l~i~~~~~a~~~f~~Va~elF~d 86 (157)
T 2vof_A 45 VAFSVQKEVEKNLKSYLDDFHVESIDTARIIFNQVMEKEFED 86 (157)
T ss_dssp HHHHHHHHHHHHTHHHHTTCCCCSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhcC
Confidence 345678999999999954 32211222222344444555544
No 55
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=26.13 E-value=1.2e+02 Score=20.60 Aligned_cols=37 Identities=22% Similarity=0.125 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCCc
Q 034402 5 SASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKP 41 (95)
Q Consensus 5 s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~I~P 41 (95)
|.+....|..||..++---++-||--..|++..|-.|
T Consensus 24 ~pev~~~Vr~LVq~Ll~~~i~~EeFt~~Lq~~lns~p 60 (105)
T 2h7b_A 24 SPEIGERVRTLVLGLVNSTLTIEEFHSKLQEATNFPL 60 (105)
T ss_dssp CHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHSSSSC
T ss_pred ChHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCC
Confidence 5778899999999999999999999999999666555
No 56
>3gnp_A OS03G0212800 protein; beta-alpha barrel, glycosidase, hydrolase; HET: SOG; 1.80A {Oryza sativa subsp} PDB: 3gno_A* 3gnr_A*
Probab=25.38 E-value=57 Score=26.59 Aligned_cols=45 Identities=31% Similarity=0.493 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCCchhHHHHHH---HHHH--------hcHHHHHHHHHh
Q 034402 6 ASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWN---ELEK--------ENKEFFEAYAQS 65 (95)
Q Consensus 6 ~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~I~P~fT~~VW~---~LE~--------eN~eFFkaY~~~ 65 (95)
.+-|+.-.++|..|+. .||+|.+|..=|. -|++ +..++|..|.+.
T Consensus 106 ~~Gl~~Y~~lid~l~~---------------~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~v~~F~~Ya~~ 161 (488)
T 3gnp_A 106 QAGIDHYNKLIDALLA---------------KGIQPYVTLYHWDLPQALEDKYKGWLDRQIVDDFAAYAET 161 (488)
T ss_dssp HHHHHHHHHHHHHHHH---------------TTCEEEEEEESSCCBHHHHHHHCGGGSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------------CCCeEEEEeCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 3445555555555544 4999999975332 3443 446788888554
No 57
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=25.37 E-value=96 Score=18.33 Aligned_cols=33 Identities=6% Similarity=-0.049 Sum_probs=28.4
Q ss_pred hhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHh
Q 034402 22 FRMTKEECMEALSKHANIKPVITSTVWNELEKE 54 (95)
Q Consensus 22 lyMsk~E~v~~L~~~a~I~P~fT~~VW~~LE~e 54 (95)
-.++..|+.+.|.+..+|.|.-.+.+-+.|++.
T Consensus 21 ~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~ 53 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQE 53 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Confidence 357888888777889999999999999999984
No 58
>3ptm_A Beta-glucosidase OS4BGlu12; beta-alpha barrel, glycosidase, hydrolase; HET: G2F; 2.40A {Oryza sativa} PDB: 3ptk_A* 3ptq_A*
Probab=25.19 E-value=28 Score=28.53 Aligned_cols=47 Identities=28% Similarity=0.410 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCCchhHHHHHH---HHHH--------hcHHHHHHHHHhh
Q 034402 5 SASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWN---ELEK--------ENKEFFEAYAQSQ 66 (95)
Q Consensus 5 s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~I~P~fT~~VW~---~LE~--------eN~eFFkaY~~~~ 66 (95)
..+-|+.-.+||..|+. .||+|.+|..=|. -|++ +..++|..|.+..
T Consensus 125 N~~Gl~fY~~lid~l~~---------------~GIeP~VTL~HwDlP~~L~~~yGGW~nr~~v~~F~~YA~~~ 182 (505)
T 3ptm_A 125 NKEGIKYYNNLINELLS---------------KGVQPFITLFHWDSPQALEDKYNGFLSPNIINDFKDYAEIC 182 (505)
T ss_dssp CHHHHHHHHHHHHHHHH---------------TTCEEEEEEESSCCBHHHHHHHCGGGSTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---------------CCCEEEEEecCCCCcHHHHHhcCCcCCHHHHHHHHHHHHHH
Confidence 34455666666666654 3999999985553 4554 3467888885543
No 59
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=24.96 E-value=82 Score=20.29 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=24.0
Q ss_pred hhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 034402 22 FRMTKEECMEALSKHANIKPVITSTVWNELEKEN 55 (95)
Q Consensus 22 lyMsk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN 55 (95)
+.+|++++...| |+.|.--+-+.++|++++
T Consensus 166 ~~~t~~~iA~~l----g~sr~tvsR~l~~L~~~g 195 (210)
T 3ryp_A 166 IKITRQEIGQIV----GCSRETVGRILKMLEDQN 195 (210)
T ss_dssp EECCHHHHHHHH----TCCHHHHHHHHHHHHHTT
T ss_pred eccCHHHHHHHh----CCcHHHHHHHHHHHHHCC
Confidence 357777777776 999999899999998864
No 60
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=24.78 E-value=89 Score=18.08 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=27.6
Q ss_pred hhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHh
Q 034402 22 FRMTKEECMEALSKHANIKPVITSTVWNELEKE 54 (95)
Q Consensus 22 lyMsk~E~v~~L~~~a~I~P~fT~~VW~~LE~e 54 (95)
-.+|..|+.+.|....++.|.-...+.+.|++.
T Consensus 22 ~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~k 54 (82)
T 1p6r_A 22 SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKK 54 (82)
T ss_dssp SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHC
Confidence 468999999999876678898888888999874
No 61
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=24.04 E-value=86 Score=20.51 Aligned_cols=30 Identities=13% Similarity=0.330 Sum_probs=24.4
Q ss_pred hhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 034402 22 FRMTKEECMEALSKHANIKPVITSTVWNELEKEN 55 (95)
Q Consensus 22 lyMsk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN 55 (95)
+.+|++++...| |+.|.--+-+.++|++++
T Consensus 186 ~~lt~~~lA~~l----g~sr~tvsR~l~~L~~~g 215 (230)
T 3iwz_A 186 LRVSRQELARLV----GCSREMAGRVLKKLQADG 215 (230)
T ss_dssp EECCHHHHHHHH----TCCHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHh----CCcHHHHHHHHHHHHHCC
Confidence 447888877776 999999999999998864
No 62
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=24.01 E-value=87 Score=20.32 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=25.2
Q ss_pred HhhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 034402 21 IFRMTKEECMEALSKHANIKPVITSTVWNELEKEN 55 (95)
Q Consensus 21 qlyMsk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN 55 (95)
.+.+|++++...| |+.|.-.+-+.++|++++
T Consensus 144 ~~~~t~~~lA~~l----g~sr~tvsR~l~~L~~~g 174 (202)
T 2zcw_A 144 VLKATHDELAAAV----GSVRETVTKVIGELAREG 174 (202)
T ss_dssp EEECCHHHHHHHH----TCCHHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHh----CCCHHHHHHHHHHHHHCC
Confidence 4568888877776 999999999999998864
No 63
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=23.41 E-value=1.2e+02 Score=19.81 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=24.6
Q ss_pred HhhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 034402 21 IFRMTKEECMEALSKHANIKPVITSTVWNELEKEN 55 (95)
Q Consensus 21 qlyMsk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN 55 (95)
.+.+|++++...| |+.|.--+-+.++|++++
T Consensus 175 ~~~~t~~~lA~~l----g~sr~tvsR~l~~l~~~g 205 (227)
T 3d0s_A 175 THDLTQEEIAQLV----GASRETVNKALADFAHRG 205 (227)
T ss_dssp ECCCCHHHHHHHH----TSCHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHh----CCcHHHHHHHHHHHHHCC
Confidence 3457888887776 999998888888888764
No 64
>4b3l_A Beta-glucosidase; hydrolase, glycosidase, carbohydrate-active enzyme; 2.51A {Streptococcus pyogenes} PDB: 4b3k_A
Probab=23.29 E-value=50 Score=26.83 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=22.5
Q ss_pred HHHHHHHhhcCCCchhHHH-----HHHH------HHHhcHHHHHHHHHh
Q 034402 28 ECMEALSKHANIKPVITST-----VWNE------LEKENKEFFEAYAQS 65 (95)
Q Consensus 28 E~v~~L~~~a~I~P~fT~~-----VW~~------LE~eN~eFFkaY~~~ 65 (95)
++|+.|.+ +||+|.+|.. .|=. +-.+..++|..|.+.
T Consensus 100 ~lid~l~~-~gI~p~vtL~H~dlP~~L~~~yGGW~nr~~vd~F~~YA~~ 147 (479)
T 4b3l_A 100 RVIDACLA-NGIRPVINLHHFDLPIALYQAYGGWESKHVVDLFVAFSKV 147 (479)
T ss_dssp HHHHHHHH-HTCEEEEESCSSCCBHHHHHHHCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCEeeEEecCCCcCHHHHHhcCCcCCHHHHHHHHHHHHH
Confidence 44555544 4999999984 3422 123456788888554
No 65
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=23.24 E-value=31 Score=21.93 Aligned_cols=26 Identities=8% Similarity=-0.071 Sum_probs=16.3
Q ss_pred CchhHHHHHHHHHHhc---HHHHHHHHHh
Q 034402 40 KPVITSTVWNELEKEN---KEFFEAYAQS 65 (95)
Q Consensus 40 ~P~fT~~VW~~LE~eN---~eFFkaY~~~ 65 (95)
+|.=-..|...+.+.+ |+|.+..++.
T Consensus 55 dp~RE~~vl~~~~~~a~~~p~~~e~i~r~ 83 (90)
T 2vkl_A 55 VHSREMKVIERYSELGPDGKDLAILLLRL 83 (90)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 4555566777776655 7777766543
No 66
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=23.13 E-value=94 Score=20.10 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=25.1
Q ss_pred hhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 034402 22 FRMTKEECMEALSKHANIKPVITSTVWNELEKEN 55 (95)
Q Consensus 22 lyMsk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN 55 (95)
+.+|++++...| |+.|.--+-+.++|++++
T Consensus 162 ~~~t~~~lA~~l----g~sr~tvsR~l~~l~~~g 191 (216)
T 4ev0_A 162 FQIRHHELAALA----GTSRETVSRVLHALAEEG 191 (216)
T ss_dssp EECCHHHHHHHH----TSCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHh----CCCHHHHHHHHHHHHHCC
Confidence 567888887776 999999999999998864
No 67
>3d7i_A Carboxymuconolactone decarboxylase family protein; 1591455, structural genomics, JOI for structural genomics, JCSG; HET: MSE PG4; 1.75A {Methanocaldococcus jannaschii}
Probab=23.13 E-value=69 Score=19.73 Aligned_cols=39 Identities=8% Similarity=0.133 Sum_probs=25.4
Q ss_pred HHHHHHHHhcHHHHHHHHHhhhHHhhh----hHHHHHHHHHHHHh
Q 034402 46 TVWNELEKENKEFFEAYAQSQSKEDRM----SEEETNQMIQKMIS 86 (95)
Q Consensus 46 ~VW~~LE~eN~eFFkaY~~~~lk~qi~----s~~~~~~~iq~~~~ 86 (95)
.-|..+.+.+|+|+++|..+ -..+. -...+.++|.--++
T Consensus 10 ~~~~~~~~~~P~~~~~~~~l--~~~~~~~~~L~~k~reLi~lavs 52 (105)
T 3d7i_A 10 EGMKVVAAAYPDLYDIIVKL--NDTVFTGKTLDYKTQKLIAIGIV 52 (105)
T ss_dssp HHHHHHHHHCHHHHHHHHHH--HHHHTSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHH--HHHHHcCCCCCHHHHHHHHHHHH
Confidence 34678889999999999554 23332 35566677665433
No 68
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=22.44 E-value=1.3e+02 Score=17.77 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=23.5
Q ss_pred hCCHHHHHHHHHh--hcCCCchhHHHHHHHHHHhc
Q 034402 23 RMTKEECMEALSK--HANIKPVITSTVWNELEKEN 55 (95)
Q Consensus 23 yMsk~E~v~~L~~--~a~I~P~fT~~VW~~LE~eN 55 (95)
+||.+-.+++-.+ .-|.+|.|..++-+++++-|
T Consensus 5 ~LSDe~LiesY~~A~el~L~~dFI~LL~~Ei~RR~ 39 (48)
T 3fyr_A 5 KLSDELLIESYFKATEMNLNRDFIELIENEIKRRS 39 (48)
T ss_dssp TSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 4566666655433 56899999999988887654
No 69
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=22.24 E-value=1.3e+02 Score=20.31 Aligned_cols=31 Identities=35% Similarity=0.303 Sum_probs=25.2
Q ss_pred CHHHHHHHHHhhcCCCchhHHHHHHHHHHhcHHHH
Q 034402 25 TKEECMEALSKHANIKPVITSTVWNELEKENKEFF 59 (95)
Q Consensus 25 sk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN~eFF 59 (95)
|.+|+-.+ +||.=.||.-=..++.+||+=.|
T Consensus 129 t~eeir~~----f~I~nd~t~eEe~~ir~en~w~~ 159 (160)
T 2p1m_A 129 TPEEIRTT----FNIKNDFTPEEEEEVRRENQWAF 159 (160)
T ss_dssp CHHHHHHH----TTCCCCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHH----cCCCCCCCHHHHHHHHHhCcccc
Confidence 77775544 69999999999999999998655
No 70
>4atd_A Raucaffricine-O-beta-D-glucosidase; alkaloid, hydrolase; 2.10A {Rauvolfia serpentina} PDB: 4a3y_A 3u5u_A 3u57_A 3u5y_A*
Probab=22.11 E-value=33 Score=28.30 Aligned_cols=46 Identities=30% Similarity=0.416 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCCchhHHHHHH---HHHH--------hcHHHHHHHHHhh
Q 034402 6 ASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWN---ELEK--------ENKEFFEAYAQSQ 66 (95)
Q Consensus 6 ~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~I~P~fT~~VW~---~LE~--------eN~eFFkaY~~~~ 66 (95)
.+-++.-.+||..|+. .||+|.+|..=|. -|++ +..++|..|.+..
T Consensus 114 ~~Gl~~Y~~lid~l~~---------------~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~ 170 (513)
T 4atd_A 114 KEGINYYNNLIDGLLA---------------NGIKPFVTLFHWDVPQALEDEYGGFLSPRIVDDFCEYAELC 170 (513)
T ss_dssp HHHHHHHHHHHHHHHH---------------TTCEEEEEEESSCCBHHHHHHHCGGGSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------------cCCEEEEEecCCCCcHHHHHHcCCcCCHHHHHHHHHHHHHH
Confidence 4445666666666654 3999999985442 4443 4568898885543
No 71
>1uwi_A Beta-galactosidase; hydrolase, beta-glycosidase, glycosidase; 2.55A {Sulfolobus solfataricus} SCOP: c.1.8.4 PDB: 1gow_A
Probab=21.61 E-value=26 Score=28.27 Aligned_cols=45 Identities=7% Similarity=0.087 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCCchhHHHHHH---H------------------HHHhcHHHHHHHHHh
Q 034402 7 SYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWN---E------------------LEKENKEFFEAYAQS 65 (95)
Q Consensus 7 ~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~I~P~fT~~VW~---~------------------LE~eN~eFFkaY~~~ 65 (95)
+=|+.=.+||..|+. .||+|.+|..=|. - +-++..++|..|.+.
T Consensus 125 ~Gl~fY~~lid~Ll~---------------~GIeP~VTL~H~DlP~~L~d~y~~~~g~~~~~GGW~n~~~v~~F~~YA~~ 189 (489)
T 1uwi_A 125 DALNHYREIFKDLKS---------------RGLYFIQNMYHWPLPLWLHDPIRVRRGDFTGPSGWLSTRTVYEFARFSAY 189 (489)
T ss_dssp HHHHHHHHHHHHHHH---------------TTCEEEEESCCSCCBGGGBCHHHHHTTCCSSCBGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------cCCcceEEeecCCccHHHHHhhhhcccccccCCCcCCHHHHHHHHHHHHH
Confidence 345555666666654 3999999986442 2 235678899999554
Q ss_pred h
Q 034402 66 Q 66 (95)
Q Consensus 66 ~ 66 (95)
.
T Consensus 190 ~ 190 (489)
T 1uwi_A 190 T 190 (489)
T ss_dssp H
T ss_pred H
Confidence 3
No 72
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=21.48 E-value=83 Score=19.64 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHHHHh
Q 034402 24 MTKEECMEALSKHANIKPVITSTVWNELEKE 54 (95)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~fT~~VW~~LE~e 54 (95)
|+--|+++.|.+..+|.|.-...+.+.||++
T Consensus 23 ~~gyel~~~l~~~~~i~~~tly~~L~~Le~~ 53 (108)
T 3l7w_A 23 SYGYDISQTIKLIASIKESTLYPILKKLEKA 53 (108)
T ss_dssp EEHHHHHHHHTTTCCCCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHhCCCcChHHHHHHHHHHC
Confidence 3445889999888999999999999999984
No 73
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=21.41 E-value=82 Score=20.65 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.3
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHh
Q 034402 29 CMEALSKHANIKPVITSTVWNELEKE 54 (95)
Q Consensus 29 ~v~~L~~~a~I~P~fT~~VW~~LE~e 54 (95)
-++.|++..+|+|.+..-|..+|.+.
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~~a 50 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLKKA 50 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 67788888899999999998888874
No 74
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=20.92 E-value=50 Score=24.10 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHHHHhcHHHHHHHH
Q 034402 24 MTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYA 63 (95)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN~eFFkaY~ 63 (95)
++++++++.|.++++..|.+..+..++ .|++.|.
T Consensus 253 ~~~~~i~~fi~~~~~~~p~~~~ls~~~------~~~~~~~ 286 (298)
T 3ed3_A 253 INKNDISKFLRDTFSITPNEGPFSRRS------EYIAYLK 286 (298)
T ss_dssp CCHHHHHHHHHHHHTCCCSSSTTSHHH------HHHHHHH
T ss_pred CCHHHHHHHHHhhcCCCCCcCCCchHH------HHHHHHh
Confidence 789999999999999999998877665 6777764
No 75
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=20.86 E-value=1.4e+02 Score=17.73 Aligned_cols=46 Identities=20% Similarity=0.194 Sum_probs=33.7
Q ss_pred HHHHHHHHHH-HHhhCCHHHHHHHHHhhcC-CCchhHHHHHHHHHHhc
Q 034402 10 HMVQHLIEKC-LIFRMTKEECMEALSKHAN-IKPVITSTVWNELEKEN 55 (95)
Q Consensus 10 ~~VQ~LIErC-LqlyMsk~E~v~~L~~~a~-I~P~fT~~VW~~LE~eN 55 (95)
..++.||++= =+-|+|-+|+.++|..... ++|.--..+...|++.+
T Consensus 9 ~~~k~Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~g 56 (72)
T 2k6x_A 9 RRIKKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHG 56 (72)
T ss_dssp HHHHHHHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhHcCCccHHHHHHhCccccccCCHHHHHHHHHHHHHCC
Confidence 4678888644 4568999999999876544 78877777777776643
No 76
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=20.85 E-value=78 Score=20.19 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=20.5
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhc
Q 034402 30 MEALSKHANIKPVITSTVWNELEKEN 55 (95)
Q Consensus 30 v~~L~~~a~I~P~fT~~VW~~LE~eN 55 (95)
+..|.++++|.|.......++|+++.
T Consensus 19 v~eLA~~l~VS~~TIRrDL~~Le~~G 44 (87)
T 2k02_A 19 AKQLSARLQTPQPLIDAMLERMEAMG 44 (87)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34566778999999988899988765
No 77
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=20.77 E-value=1.4e+02 Score=17.92 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=18.7
Q ss_pred HHHHHHHhcHHHHHHHHHhhhHHhhhhHHHHHHHHHH
Q 034402 47 VWNELEKENKEFFEAYAQSQSKEDRMSEEETNQMIQK 83 (95)
Q Consensus 47 VW~~LE~eN~eFFkaY~~~~lk~qi~s~~~~~~~iq~ 83 (95)
.|++=.+.|| |++|... +=-.|.+++.+..+.
T Consensus 9 avqKt~~~hP--Fk~yLd~---di~ls~e~~~~~~~~ 40 (60)
T 2g31_A 9 AIQKSDEGHP--FRAYLES---EVAISEELVQKYSNS 40 (60)
T ss_dssp HHHHHHHHCT--THHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCC--chhcccc---CcCCCHHHHHHHHHH
Confidence 4677777888 9999442 112244455544444
No 78
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.72 E-value=1.1e+02 Score=20.79 Aligned_cols=42 Identities=17% Similarity=0.377 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHH----hhcCCCchhHHHHHHHHHH
Q 034402 10 HMVQHLIEKCLIFRMTKEECMEALS----KHANIKPVITSTVWNELEK 53 (95)
Q Consensus 10 ~~VQ~LIErCLqlyMsk~E~v~~L~----~~a~I~P~fT~~VW~~LE~ 53 (95)
..|..++|-|+....+-+|.|..+- ...|++|-. .-...+|.
T Consensus 45 ~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~--enL~~FEh 90 (101)
T 2keb_A 45 ALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTS--EILNSFEH 90 (101)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCH--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCH--HHHHHHHH
Confidence 5788999999999999999886542 234666654 34455553
No 79
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=20.67 E-value=1.3e+02 Score=19.78 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=14.7
Q ss_pred CCchhHHHHHHHHHHhc------HHHHHHHHHhhh
Q 034402 39 IKPVITSTVWNELEKEN------KEFFEAYAQSQS 67 (95)
Q Consensus 39 I~P~fT~~VW~~LE~eN------~eFFkaY~~~~l 67 (95)
.+|.=-..|+..+.+.+ |+|-+..++..+
T Consensus 54 ~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~Ii 88 (114)
T 3rmi_A 54 VDPLREQYQIKRLRKLAIDTHFDPDFAEKFLKFII 88 (114)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34444445665555542 555555554433
No 80
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=20.47 E-value=1.2e+02 Score=20.92 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHh----hCCHHHHHHHHHhhcCCCchh
Q 034402 5 SASYIHMVQHLIEKCLIF----RMTKEECMEALSKHANIKPVI 43 (95)
Q Consensus 5 s~~~I~~VQ~LIErCLql----yMsk~E~v~~L~~~a~I~P~f 43 (95)
+......+.++|.+||+. ..|-+|+++.|... ++...+
T Consensus 274 ~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~-~~~~~~ 315 (326)
T 3uim_A 274 KDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD-GLAERW 315 (326)
T ss_dssp CHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS-SCSSSC
T ss_pred CHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc-chhhhh
Confidence 355667899999999975 67889999999763 554444
No 81
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=20.40 E-value=95 Score=19.97 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHH
Q 034402 10 HMVQHLIEKCLIFRMTKEECMEAL 33 (95)
Q Consensus 10 ~~VQ~LIErCLqlyMsk~E~v~~L 33 (95)
..|..|+|-|+....+-+|+|..+
T Consensus 22 ~v~eKl~ElC~~y~~~~~e~V~ew 45 (78)
T 4e2i_2 22 ALIEKLVELCVQYGQNEEGMVGEL 45 (78)
T ss_dssp HHHHHHHTHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 588999999999999999998765
No 82
>1o0l_A Apoptosis regulator BCL-W; helical bundle, binding groove, BH3; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=20.02 E-value=89 Score=22.06 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.2
Q ss_pred HHHHHHHHhcHHHHHHHH
Q 034402 46 TVWNELEKENKEFFEAYA 63 (95)
Q Consensus 46 ~VW~~LE~eN~eFFkaY~ 63 (95)
.+=.+||+.|+++|+...
T Consensus 53 ~~gdele~~~~~~f~~~~ 70 (188)
T 1o0l_A 53 AAGDEFETRFRRTFSDLA 70 (188)
T ss_dssp HHHHHHHHHCSCSHHHHH
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 366789999999999994
Done!