Query 034404
Match_columns 95
No_of_seqs 103 out of 119
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 03:19:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o7b_T Tumor necrosis factor-i 4.2 3.3E+02 0.011 17.6 1.2 15 81-95 42-56 (98)
2 1n0q_A 3ANK, 3 ankyrin repeats 3.2 3.9E+02 0.013 14.6 0.8 11 64-74 35-45 (93)
3 3aaa_C Myotrophin, protein V-1 2.6 5E+02 0.017 14.9 0.8 11 64-74 73-83 (123)
4 1p65_A Nucleocapsid protein; v 2.5 6.8E+02 0.023 15.7 1.4 20 61-80 51-70 (73)
5 3brv_A Inhibitor of nuclear fa 2.4 4E+02 0.014 15.4 0.2 8 87-94 41-48 (48)
6 2vda_B Maltoporin; sugar trans 2.3 7.4E+02 0.025 12.9 1.1 12 66-77 11-22 (28)
7 2bcx_B Ryanodine receptor 1; E 2.3 3.5E+02 0.012 14.3 -0.2 7 64-70 24-30 (30)
8 1z65_A PRPLP, prion-like prote 2.3 8.5E+02 0.029 12.9 1.4 13 71-83 11-23 (30)
9 3c5r_A BARD-1, BRCA1-associate 2.1 6.2E+02 0.021 14.7 0.8 12 63-74 75-86 (137)
10 2l6b_A NR1C; ankyrin, consensu 2.1 5.9E+02 0.02 14.3 0.6 11 64-74 42-52 (115)
No 1
>1o7b_T Tumor necrosis factor-inducible protein TSG-6; hyaluronan-binding domain, carbohydrate-binding domain, LINK module, cell adhesion, glycoprotein; NMR {Homo sapiens} SCOP: d.169.1.4 PDB: 1o7c_T 2pf5_A*
Probab=4.17 E-value=3.3e+02 Score=17.60 Aligned_cols=15 Identities=7% Similarity=0.116 Sum_probs=11.8
Q ss_pred cccccccceeccCCC
Q 034404 81 LSAASKSCRALSQGT 95 (95)
Q Consensus 81 Ls~~~~s~~~Lsqg~ 95 (95)
.+.+.-.+|||.+|+
T Consensus 42 ~G~~~C~~GWL~Dgs 56 (98)
T 1o7b_T 42 IGFHVCAAGWMAKGR 56 (98)
T ss_dssp TTCCCSSCEEBTTTB
T ss_pred cCccccccccccCCe
Confidence 566777899999874
No 2
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=3.22 E-value=3.9e+02 Score=14.63 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=7.9
Q ss_pred ccchhHHHHHH
Q 034404 64 SLLPLHSVVAA 74 (95)
Q Consensus 64 SllPLHsAvAs 74 (95)
..-|||.|+..
T Consensus 35 g~t~L~~A~~~ 45 (93)
T 1n0q_A 35 GRTPLHLAARN 45 (93)
T ss_dssp SCCHHHHHHHT
T ss_pred CCCHHHHHHHc
Confidence 35699998754
No 3
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=2.60 E-value=5e+02 Score=14.89 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=8.4
Q ss_pred ccchhHHHHHH
Q 034404 64 SLLPLHSVVAA 74 (95)
Q Consensus 64 SllPLHsAvAs 74 (95)
..-|||.|+..
T Consensus 73 g~tpL~~A~~~ 83 (123)
T 3aaa_C 73 HITPLLSAVYE 83 (123)
T ss_dssp SCCHHHHHHHH
T ss_pred CCCHHHHHHHc
Confidence 45799999865
No 4
>1p65_A Nucleocapsid protein; viral protein; 2.60A {Porcine respiratory and reproductive svirus} SCOP: d.254.1.1
Probab=2.50 E-value=6.8e+02 Score=15.73 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=14.6
Q ss_pred cccccchhHHHHHHHHhhhc
Q 034404 61 CAQSLLPLHSVVAAARMTSC 80 (95)
Q Consensus 61 ~~~SllPLHsAvAsArltS~ 80 (95)
-||=|||-|..|=.-|.|+.
T Consensus 51 ~VeFmLP~~hTVRLIrvta~ 70 (73)
T 1p65_A 51 TVEFSLPTHHTVRLIRVTAS 70 (73)
T ss_dssp EEEECCCHHHHHHHHHHC--
T ss_pred EEEEecccceEEEEEEeccC
Confidence 47889999998877766653
No 5
>3brv_A Inhibitor of nuclear factor kappa-B kinase subuni; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Synthetic} PDB: 3brt_A
Probab=2.44 E-value=4e+02 Score=15.37 Aligned_cols=8 Identities=13% Similarity=-0.035 Sum_probs=3.7
Q ss_pred cceeccCC
Q 034404 87 SCRALSQG 94 (95)
Q Consensus 87 s~~~Lsqg 94 (95)
-|.||.+|
T Consensus 41 DwSWL~~~ 48 (48)
T 3brv_A 41 DWSWLQTE 48 (48)
T ss_dssp CCGGGC--
T ss_pred hhhhhccC
Confidence 46666553
No 6
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=2.29 E-value=7.4e+02 Score=12.85 Aligned_cols=12 Identities=58% Similarity=0.692 Sum_probs=7.8
Q ss_pred chhHHHHHHHHh
Q 034404 66 LPLHSVVAAARM 77 (95)
Q Consensus 66 lPLHsAvAsArl 77 (95)
|||--||+..-|
T Consensus 11 lplavav~agv~ 22 (28)
T 2vda_B 11 LPLAVAVAAGVM 22 (28)
T ss_dssp CTHHHHHHHHTT
T ss_pred CchHHHHHHHHh
Confidence 677677766544
No 7
>2bcx_B Ryanodine receptor 1; EF-hand, type-2 turn, calcium binding protein; 2.00A {Gallus gallus}
Probab=2.28 E-value=3.5e+02 Score=14.31 Aligned_cols=7 Identities=29% Similarity=0.553 Sum_probs=2.4
Q ss_pred ccchhHH
Q 034404 64 SLLPLHS 70 (95)
Q Consensus 64 SllPLHs 70 (95)
-|.|||+
T Consensus 24 rm~pLy~ 30 (30)
T 2bcx_B 24 RMTPLYN 30 (30)
T ss_dssp HHCC---
T ss_pred hhccccC
Confidence 4666663
No 8
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=2.25 E-value=8.5e+02 Score=12.92 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=10.7
Q ss_pred HHHHHHhhhcccc
Q 034404 71 VVAAARMTSCLSA 83 (95)
Q Consensus 71 AvAsArltS~Ls~ 83 (95)
|+.-.+|-|+|++
T Consensus 11 ai~c~LLfs~Ls~ 23 (30)
T 1z65_A 11 AILCMLLASHLST 23 (30)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHH
Confidence 6778889999885
No 9
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=2.15 E-value=6.2e+02 Score=14.70 Aligned_cols=12 Identities=33% Similarity=0.421 Sum_probs=8.7
Q ss_pred cccchhHHHHHH
Q 034404 63 QSLLPLHSVVAA 74 (95)
Q Consensus 63 ~SllPLHsAvAs 74 (95)
+...|||.|+..
T Consensus 75 ~g~t~L~~A~~~ 86 (137)
T 3c5r_A 75 QNDSPLHDAAKN 86 (137)
T ss_dssp GGCCHHHHHHHT
T ss_pred CCCCHHHHHHHc
Confidence 356899999753
No 10
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=2.12 E-value=5.9e+02 Score=14.29 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=7.7
Q ss_pred ccchhHHHHHH
Q 034404 64 SLLPLHSVVAA 74 (95)
Q Consensus 64 SllPLHsAvAs 74 (95)
..-|||.|+..
T Consensus 42 g~t~L~~A~~~ 52 (115)
T 2l6b_A 42 GNTPLHLAAKN 52 (115)
T ss_dssp SCCTTHHHHTT
T ss_pred CCCHHHHHHHc
Confidence 45689988743
Done!