Query 034406
Match_columns 95
No_of_seqs 109 out of 385
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 02:31:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03650 MPC: Uncharacterised 100.0 4.6E-55 1E-59 309.1 5.6 94 2-95 4-97 (119)
2 KOG1589 Uncharacterized conser 100.0 4.8E-54 1E-58 302.2 4.2 94 1-94 7-100 (118)
3 KOG1590 Uncharacterized conser 100.0 2.1E-45 4.5E-50 262.2 3.8 92 3-94 10-104 (132)
4 PF03083 MtN3_slv: Sugar efflu 96.5 0.0017 3.6E-08 41.8 1.7 57 37-95 28-84 (87)
5 KOG1623 Multitransmembrane pro 89.6 0.23 5E-06 39.1 2.0 73 20-94 131-208 (243)
6 PF14795 Leucyl-specific: Leuc 38.2 13 0.00029 23.5 0.5 7 16-22 50-56 (56)
7 KOG1623 Multitransmembrane pro 35.9 38 0.00081 26.8 2.7 56 37-93 34-89 (243)
8 PRK05299 rpsB 30S ribosomal pr 23.4 37 0.0008 26.6 0.8 23 24-46 177-199 (258)
9 CHL00067 rps2 ribosomal protei 23.2 37 0.00081 26.0 0.7 33 14-46 162-203 (230)
10 TIGR01011 rpsB_bact ribosomal 22.3 41 0.00088 25.7 0.8 23 24-46 175-197 (225)
11 COG0052 RpsB Ribosomal protein 20.8 46 0.00099 26.7 0.8 24 24-47 176-199 (252)
No 1
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=100.00 E-value=4.6e-55 Score=309.06 Aligned_cols=94 Identities=47% Similarity=0.893 Sum_probs=91.7
Q ss_pred hhhHHhhcCCCCCcceeeccccccccccccccccCCCCCccccccchhHHHHHhHhhhhhheeeccchhhhhhhhhhhhh
Q 034406 2 EILKTFWNSPMGPKTTHFWGPAFNWGLPFAAFLDTKKPPELISGSMTGVMCVYSALCMRFAWMVQPRNLHLLACHASNES 81 (95)
Q Consensus 2 ~~~~~~~~~p~GpkT~hFW~P~~kWgl~iA~l~D~~rppe~IS~~~t~aL~~~g~i~~R~s~~I~P~N~~L~~~n~~~~~ 81 (95)
+++|++|+||+||+|||||||++|||||||||+|++||||+||++||+||++||+||||||++|+||||+||+||++|++
T Consensus 4 ~~~~~~~~~~~gp~T~hFWaP~~kWgl~iA~i~D~~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~ 83 (119)
T PF03650_consen 4 AKFRRFWNSPAGPKTTHFWAPVAKWGLPIAGIADMKRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNAT 83 (119)
T ss_pred HHHHHHHcCccccceEEeehhheeheeeeeehhhcCCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhcCC
Q 034406 82 VQLYQLSRWAMAPR 95 (95)
Q Consensus 82 ~~~~ql~R~~~~~~ 95 (95)
+|+||++|+++|++
T Consensus 84 ~q~~Ql~R~~~y~~ 97 (119)
T PF03650_consen 84 TQLYQLYRKLNYQY 97 (119)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999974
No 2
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.8e-54 Score=302.19 Aligned_cols=94 Identities=33% Similarity=0.696 Sum_probs=92.0
Q ss_pred ChhhHHhhcCCCCCcceeeccccccccccccccccCCCCCccccccchhHHHHHhHhhhhhheeeccchhhhhhhhhhhh
Q 034406 1 MEILKTFWNSPMGPKTTHFWGPAFNWGLPFAAFLDTKKPPELISGSMTGVMCVYSALCMRFAWMVQPRNLHLLACHASNE 80 (95)
Q Consensus 1 m~~~~~~~~~p~GpkT~hFW~P~~kWgl~iA~l~D~~rppe~IS~~~t~aL~~~g~i~~R~s~~I~P~N~~L~~~n~~~~ 80 (95)
|+++|++||||+||||||||||++|||||+|||+|++||||+||+.|+.||++||+||+|||++|+|+||+||+||++++
T Consensus 7 ~~k~r~~WnhpaGPKTVhFWAPt~KWglv~AglaD~arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~ 86 (118)
T KOG1589|consen 7 VAKLRPLWNHPAGPKTVHFWAPTFKWGLVIAGLADLARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVA 86 (118)
T ss_pred HHHHHHHhcCCCCCcEEEEecchhhhhheeecHHhhcCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhHhhcC
Q 034406 81 SVQLYQLSRWAMAP 94 (95)
Q Consensus 81 ~~~~~ql~R~~~~~ 94 (95)
++|+|||.|+++|+
T Consensus 87 ~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 87 ITGIYQLTRIANYQ 100 (118)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999996
No 3
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.1e-45 Score=262.23 Aligned_cols=92 Identities=59% Similarity=0.992 Sum_probs=88.7
Q ss_pred hhHHhhcCCCCCc---ceeeccccccccccccccccCCCCCccccccchhHHHHHhHhhhhhheeeccchhhhhhhhhhh
Q 034406 3 ILKTFWNSPMGPK---TTHFWGPAFNWGLPFAAFLDTKKPPELISGSMTGVMCVYSALCMRFAWMVQPRNLHLLACHASN 79 (95)
Q Consensus 3 ~~~~~~~~p~Gpk---T~hFW~P~~kWgl~iA~l~D~~rppe~IS~~~t~aL~~~g~i~~R~s~~I~P~N~~L~~~n~~~ 79 (95)
++.++.+++.+++ |||||||++|||||||+|.||+|+||.||++||+||++||.+||||+|.|+||||+||+||++|
T Consensus 10 ~~~~~~~ske~r~Y~~sTHFWGPvaNwGlpiAal~DmkK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~N 89 (132)
T KOG1590|consen 10 RFQDFLNSKEFRKYFMSTHFWGPVANWGLPIAALVDMKKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHATN 89 (132)
T ss_pred HHHHHhcChHHhhhhhhcccccchhhccchHHHHHhccCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhhh
Confidence 4678889999997 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhHhhcC
Q 034406 80 ESVQLYQLSRWAMAP 94 (95)
Q Consensus 80 ~~~~~~ql~R~~~~~ 94 (95)
+++|++|++|+++|+
T Consensus 90 ~taQ~~Qg~Rf~~~~ 104 (132)
T KOG1590|consen 90 ETAQLAQGSRFLNYN 104 (132)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999985
No 4
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=96.46 E-value=0.0017 Score=41.81 Aligned_cols=57 Identities=11% Similarity=0.115 Sum_probs=52.7
Q ss_pred CCCCccccccchhHHHHHhHhhhhhheeeccchhhhhhhhhhhhhHHHHHHHhHhhcCC
Q 034406 37 KKPPELISGSMTGVMCVYSALCMRFAWMVQPRNLHLLACHASNESVQLYQLSRWAMAPR 95 (95)
Q Consensus 37 ~rppe~IS~~~t~aL~~~g~i~~R~s~~I~P~N~~L~~~n~~~~~~~~~ql~R~~~~~~ 95 (95)
+|..|.+|..+..+..+-+..|.+|.+.+ +|+.++.+|++-...+.+|+.=++.|.+
T Consensus 28 ~ks~~~~~~~~~~~~~~~~~~W~~YG~l~--~d~~i~~~N~~g~~~~~~~~~~~~~y~~ 84 (87)
T PF03083_consen 28 TKSTGSVSFPPFLAMFFNCVLWLIYGILI--NDWPIIVPNVFGLVLSIIYLVVYYIYPS 84 (87)
T ss_pred CCCCCccceehhHHHhhhccHhhhhhhhc--CCeeEEeeHHHHHHHHHHHHhheEEeCC
Confidence 79999999999999999999999999998 5999999999999999999988777753
No 5
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=89.61 E-value=0.23 Score=39.12 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=61.9
Q ss_pred ccccccccccccccccC-----CCCCccccccchhHHHHHhHhhhhhheeeccchhhhhhhhhhhhhHHHHHHHhHhhcC
Q 034406 20 WGPAFNWGLPFAAFLDT-----KKPPELISGSMTGVMCVYSALCMRFAWMVQPRNLHLLACHASNESVQLYQLSRWAMAP 94 (95)
Q Consensus 20 W~P~~kWgl~iA~l~D~-----~rppe~IS~~~t~aL~~~g~i~~R~s~~I~P~N~~L~~~n~~~~~~~~~ql~R~~~~~ 94 (95)
-+-++|=..-.|+++|| +|..|.+....+.++.+.+..|.=|.+.+ +|..++.-|+.-...++.|+.=+.+|.
T Consensus 131 vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli--~D~~IaipN~iG~~l~~~QL~Ly~~y~ 208 (243)
T KOG1623|consen 131 VCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLI--KDFFIAIPNVLGFLLGLIQLILYFKYP 208 (243)
T ss_pred hhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHh--cCeEEEcccHHHHHHHHHHHHHhhhcC
Confidence 34556666667777887 69999999999999999999999999998 899999999999999999998776664
No 6
>PF14795 Leucyl-specific: Leucine-tRNA synthetase-specific domain; PDB: 1OBC_A 2BTE_A 2V0G_A 2BYT_A 1OBH_A 1H3N_A 2V0C_A.
Probab=38.23 E-value=13 Score=23.48 Aligned_cols=7 Identities=71% Similarity=1.659 Sum_probs=6.3
Q ss_pred ceeeccc
Q 034406 16 TTHFWGP 22 (95)
Q Consensus 16 T~hFW~P 22 (95)
|+|||-|
T Consensus 50 ~~h~WKP 56 (56)
T PF14795_consen 50 TLHFWKP 56 (56)
T ss_dssp SEEEEEE
T ss_pred eEeecCC
Confidence 8999987
No 7
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=35.86 E-value=38 Score=26.80 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=41.7
Q ss_pred CCCCccccccchhHHHHHhHhhhhhheeeccchhhhhhhhhhhhhHHHHHHHhHhhc
Q 034406 37 KKPPELISGSMTGVMCVYSALCMRFAWMVQPRNLHLLACHASNESVQLYQLSRWAMA 93 (95)
Q Consensus 37 ~rppe~IS~~~t~aL~~~g~i~~R~s~~I~P~N~~L~~~n~~~~~~~~~ql~R~~~~ 93 (95)
+|..|.+|.----.=.+-+.+|+||.+...= .+++-.+|.+....+..=+.=++-|
T Consensus 34 kkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~-d~llitIN~~G~~ie~~Yi~~f~~y 89 (243)
T KOG1623|consen 34 KKSVEGFSSLPFLMGLLSCSLWLYYGLLKVH-DYLLITINGIGLVIETVYISIFLYY 89 (243)
T ss_pred ccCcCCCCCcCcHHHHHHHHHHHHhhhhccC-ceEEEEEehhcHHHHHHHHHHHhee
Confidence 6888998876655555788999999965543 7899999999888887555444433
No 8
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=23.37 E-value=37 Score=26.58 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=19.9
Q ss_pred ccccccccccccCCCCCcccccc
Q 034406 24 FNWGLPFAAFLDTKKPPELISGS 46 (95)
Q Consensus 24 ~kWgl~iA~l~D~~rppe~IS~~ 46 (95)
.|=+||+.|+.|.+-+|+.|+.+
T Consensus 177 ~kl~IPiIaivDTn~dp~~Idyp 199 (258)
T PRK05299 177 RKLGIPVVAIVDTNCDPDGVDYP 199 (258)
T ss_pred HHhCCCEEEEeeCCCCCccccee
Confidence 35689999999999999998754
No 9
>CHL00067 rps2 ribosomal protein S2
Probab=23.18 E-value=37 Score=25.99 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=25.5
Q ss_pred Ccceeecccc---------ccccccccccccCCCCCcccccc
Q 034406 14 PKTTHFWGPA---------FNWGLPFAAFLDTKKPPELISGS 46 (95)
Q Consensus 14 pkT~hFW~P~---------~kWgl~iA~l~D~~rppe~IS~~ 46 (95)
|.-+..-.|. .|=+||+.|+.|.+-+|+.|+.+
T Consensus 162 P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~p~~idyp 203 (230)
T CHL00067 162 PDIVIIIDQQEEYTALRECRKLGIPTISILDTNCDPDLADIP 203 (230)
T ss_pred CCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCCcccccee
Confidence 5555555554 46789999999999999998654
No 10
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=22.33 E-value=41 Score=25.70 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=19.9
Q ss_pred ccccccccccccCCCCCcccccc
Q 034406 24 FNWGLPFAAFLDTKKPPELISGS 46 (95)
Q Consensus 24 ~kWgl~iA~l~D~~rppe~IS~~ 46 (95)
.|=+||+-|+.|.+-+|+.|+.+
T Consensus 175 ~~l~IP~I~ivDTn~~p~~idyp 197 (225)
T TIGR01011 175 RKLGIPVVAIVDTNCDPDLVDYP 197 (225)
T ss_pred HHcCCCEEEEeeCCCCCccccee
Confidence 45689999999999999998754
No 11
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=20.83 E-value=46 Score=26.66 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.0
Q ss_pred ccccccccccccCCCCCccccccc
Q 034406 24 FNWGLPFAAFLDTKKPPELISGSM 47 (95)
Q Consensus 24 ~kWgl~iA~l~D~~rppe~IS~~~ 47 (95)
-|=|||+-|+.|.+-+||.|+..-
T Consensus 176 ~klgIPVvAlvDTn~dpd~VD~~I 199 (252)
T COG0052 176 NKLGIPVVALVDTNCDPDGVDYVI 199 (252)
T ss_pred HHcCCCEEEEecCCCCCccCceee
Confidence 477999999999999999997653
Done!