Query 034406
Match_columns 95
No_of_seqs 109 out of 385
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 03:22:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_B Ribosomal protein S2; s 28.8 19 0.00065 26.8 1.1 34 14-47 158-200 (231)
2 3r8n_B 30S ribosomal protein S 25.0 24 0.00082 26.0 1.1 24 24-47 169-192 (218)
3 2vqe_B 30S ribosomal protein S 24.2 25 0.00085 26.7 1.0 24 24-47 178-201 (256)
4 1vi6_A 30S ribosomal protein S 21.2 29 0.00097 25.6 0.8 24 23-46 134-157 (208)
5 2xzm_B RPS0E; ribosome, transl 18.5 41 0.0014 25.3 1.2 24 23-46 133-156 (241)
6 3a5p_A Haemagglutinin I; lecti 18.5 28 0.00097 23.0 0.3 20 8-32 41-60 (104)
7 3bch_A 40S ribosomal protein S 16.3 43 0.0015 25.5 0.8 24 23-46 170-193 (253)
8 3j20_B 30S ribosomal protein S 15.5 46 0.0016 24.3 0.8 24 24-47 131-154 (202)
9 3n91_A Uncharacterized protein 14.5 8.5 0.00029 30.3 -3.6 24 62-85 159-182 (323)
10 2ju0_B Phosphatidylinositol 4- 12.8 1.7E+02 0.0059 17.2 2.7 30 33-62 22-51 (52)
No 1
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=28.83 E-value=19 Score=26.82 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=27.2
Q ss_pred Ccceeeccc---------cccccccccccccCCCCCccccccc
Q 034406 14 PKTTHFWGP---------AFNWGLPFAAFLDTKKPPELISGSM 47 (95)
Q Consensus 14 pkT~hFW~P---------~~kWgl~iA~l~D~~rppe~IS~~~ 47 (95)
|.-+..=.| +.|=+||+.|+.|.+-||+.|+.+-
T Consensus 158 Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDTn~dp~~Vdy~I 200 (231)
T 3bbn_B 158 PDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISI 200 (231)
T ss_dssp CSEEEESCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEEC
T ss_pred CCEEEEeCCccccHHHHHHHHhCCCEEEEecCCCCccceeEEe
Confidence 555555566 5788999999999999999997654
No 2
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=24.98 E-value=24 Score=26.00 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=20.4
Q ss_pred ccccccccccccCCCCCccccccc
Q 034406 24 FNWGLPFAAFLDTKKPPELISGSM 47 (95)
Q Consensus 24 ~kWgl~iA~l~D~~rppe~IS~~~ 47 (95)
.|=+||+.|+.|.+-||+.|+.+-
T Consensus 169 ~~l~IP~IalvDTn~~p~~Vdy~I 192 (218)
T 3r8n_B 169 NNLGIPVFAIVDTNSDPDGVDFVI 192 (218)
T ss_dssp HHHTCCCEEECCSSSCCSSCSEEC
T ss_pred HHhCCCEEEEEeCcCCCcccceEe
Confidence 466899999999999999987653
No 3
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=24.17 E-value=25 Score=26.66 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.7
Q ss_pred ccccccccccccCCCCCccccccc
Q 034406 24 FNWGLPFAAFLDTKKPPELISGSM 47 (95)
Q Consensus 24 ~kWgl~iA~l~D~~rppe~IS~~~ 47 (95)
.|=+||+.|+.|.+-||+.|+.+-
T Consensus 178 ~~l~IPvIaivDTn~dp~~VdypI 201 (256)
T 2vqe_B 178 RKLFIPVIALADTDSDPDLVDYII 201 (256)
T ss_dssp HHTTCCCEECCCTTSCGGGCSEEC
T ss_pred HHcCCCEEEEecCCCCchhcceEe
Confidence 467999999999999999997653
No 4
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=21.25 E-value=29 Score=25.58 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.7
Q ss_pred cccccccccccccCCCCCcccccc
Q 034406 23 AFNWGLPFAAFLDTKKPPELISGS 46 (95)
Q Consensus 23 ~~kWgl~iA~l~D~~rppe~IS~~ 46 (95)
+.|=+||+.|+.|.+-||+.|+..
T Consensus 134 A~~l~IPvIalvDTn~~p~~Vd~~ 157 (208)
T 1vi6_A 134 ATAVGIPVVALCDSNNSSADVDLV 157 (208)
T ss_dssp HHHTTCCEEEEECTTCCCTTCSEE
T ss_pred HHHhCCCEEEEeCCCCCccccCEE
Confidence 457799999999999999998754
No 5
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=18.52 E-value=41 Score=25.28 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.8
Q ss_pred cccccccccccccCCCCCcccccc
Q 034406 23 AFNWGLPFAAFLDTKKPPELISGS 46 (95)
Q Consensus 23 ~~kWgl~iA~l~D~~rppe~IS~~ 46 (95)
+.|=+||+.|+.|.+-||+.|+..
T Consensus 133 A~~l~IPvIalvDTn~~p~~VDy~ 156 (241)
T 2xzm_B 133 ASYVNIPVIALCDSDSPLAYVDVV 156 (241)
T ss_dssp HTTTTCCEEECCCSSSCCTTCCEE
T ss_pred HHHhCCCEEEEecCCCCcccccEE
Confidence 357899999999999999998654
No 6
>3a5p_A Haemagglutinin I; lectin, sugar binding protein; 1.82A {Physarum polycephalum}
Probab=18.50 E-value=28 Score=23.01 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=13.0
Q ss_pred hcCCCCCcceeeccccccccccccc
Q 034406 8 WNSPMGPKTTHFWGPAFNWGLPFAA 32 (95)
Q Consensus 8 ~~~p~GpkT~hFW~P~~kWgl~iA~ 32 (95)
--+..||||+|= .|-|.+-+
T Consensus 41 tfseigpktvhq-----swyitvhn 60 (104)
T 3a5p_A 41 TFSEIGPKTVHQ-----SWYITVHN 60 (104)
T ss_dssp EEECCSCCCSSS-----SEEEEEEE
T ss_pred eehhcCCceeee-----eEEEEEec
Confidence 346789999984 45554433
No 7
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=16.29 E-value=43 Score=25.47 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.8
Q ss_pred cccccccccccccCCCCCcccccc
Q 034406 23 AFNWGLPFAAFLDTKKPPELISGS 46 (95)
Q Consensus 23 ~~kWgl~iA~l~D~~rppe~IS~~ 46 (95)
+.|=+||+.||.|.+-||+.|+..
T Consensus 170 A~~lgIPvIalvDTn~dp~~VDy~ 193 (253)
T 3bch_A 170 ASYVNLPTIALCNTDSPLRYVDIA 193 (253)
T ss_dssp HHHTTCCEEEEECTTCCCTTCSEE
T ss_pred HHHhCCCEEEEEcCCCCcccCceE
Confidence 457899999999999999998754
No 8
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=15.55 E-value=46 Score=24.28 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=20.0
Q ss_pred ccccccccccccCCCCCccccccc
Q 034406 24 FNWGLPFAAFLDTKKPPELISGSM 47 (95)
Q Consensus 24 ~kWgl~iA~l~D~~rppe~IS~~~ 47 (95)
.|=+||+.|+.|.+-||+.|+..-
T Consensus 131 ~~l~IP~Ial~DTn~~p~~Vd~~I 154 (202)
T 3j20_B 131 VEIGIPIVALVDTENLLSYVDLAI 154 (202)
T ss_dssp HHHTCCEEEEECTTCCCTTCCEEE
T ss_pred HHcCCCEEEEEcCCCCccccCEEE
Confidence 355899999999999999987643
No 9
>3n91_A Uncharacterized protein; domain of unknown function (DUF1735), structural genomics, J center for structural genomics, JCSG; HET: 2PE; 2.40A {Bacteroides ovatus}
Probab=14.46 E-value=8.5 Score=30.32 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.2
Q ss_pred heeeccchhhhhhhhhhhhhHHHH
Q 034406 62 AWMVQPRNLHLLACHASNESVQLY 85 (95)
Q Consensus 62 s~~I~P~N~~L~~~n~~~~~~~~~ 85 (95)
.|.|.|++|.|+++...|--.+.|
T Consensus 159 ~w~v~pkdyvLy~vky~N~y~G~Y 182 (323)
T 3n91_A 159 DWSILPQNFVLYAVKYVNPWHGEY 182 (323)
T ss_dssp GEEECCCSEEEEEEEEECTTCEEE
T ss_pred ccccCCCcEEEEEEEEeccCceEE
Confidence 389999999999999888766655
No 10
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=12.84 E-value=1.7e+02 Score=17.18 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=23.1
Q ss_pred cccCCCCCccccccchhHHHHHhHhhhhhh
Q 034406 33 FLDTKKPPELISGSMTGVMCVYSALCMRFA 62 (95)
Q Consensus 33 l~D~~rppe~IS~~~t~aL~~~g~i~~R~s 62 (95)
..|.....++|..+-.-||.+.|++.+-++
T Consensus 22 ~~~~~~~~~k~~ENv~PalVL~s~v~sS~a 51 (52)
T 2ju0_B 22 TSSGSDKNVKIHENVAPALVLSSMIMSAIA 51 (52)
T ss_dssp SSCCCCTTCCSSCSHHHHHHHHHHHHHTCC
T ss_pred CCccccchHHhhccccHHHHHHHHHHHHhh
Confidence 345555668999999999999999877543
Done!