Query 034406
Match_columns 95
No_of_seqs 109 out of 385
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 03:22:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034406.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034406hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gy9b1 c.23.15.1 (B:8-225) Ri 26.2 10 0.00075 25.9 1.1 23 24-46 169-191 (218)
2 d2uubb1 c.23.15.1 (B:7-240) Ri 19.5 15 0.0011 25.4 0.8 22 25-46 173-194 (234)
3 d2fhea1 a.45.1.1 (A:81-216) Cl 13.4 46 0.0034 20.0 1.9 25 3-28 107-131 (136)
4 d2e74f1 f.23.25.1 (F:1-32) Pet 12.0 49 0.0036 16.5 1.4 16 48-63 7-22 (32)
5 d1vi6a_ c.23.15.1 (A:) Ribosom 10.5 38 0.0028 22.7 0.8 22 24-45 130-151 (193)
6 d2q7sa1 c.56.5.9 (A:10-289) N- 7.2 77 0.0056 21.2 1.3 22 26-47 60-85 (280)
7 d1v54j_ f.23.4.1 (J:) Mitochon 6.4 35 0.0025 19.3 -0.8 24 40-63 27-50 (58)
8 d1v95a_ c.51.1.1 (A:) Nuclear 6.2 52 0.0038 21.3 -0.1 39 35-75 39-77 (130)
9 d1xd7a_ a.4.5.55 (A:) Hypothet 6.1 64 0.0047 19.1 0.3 14 34-48 58-71 (127)
10 d1duga1 a.45.1.1 (A:81-220) Cl 5.7 1.5E+02 0.011 17.6 2.0 21 3-27 107-130 (140)
No 1
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]}
Probab=26.19 E-value=10 Score=25.85 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.1
Q ss_pred ccccccccccccCCCCCcccccc
Q 034406 24 FNWGLPFAAFLDTKKPPELISGS 46 (95)
Q Consensus 24 ~kWgl~iA~l~D~~rppe~IS~~ 46 (95)
.|=+||+.|+.|.+-+|+.|+.+
T Consensus 169 ~~l~IP~I~ivDTn~dp~~idyp 191 (218)
T d2gy9b1 169 NNLGIPVFAIVDTNSDPDGVDFV 191 (218)
T ss_dssp HHTTCCEEECCCSSSCGGGCTEE
T ss_pred HHcCCCEEEEeeCCCCCccCcee
Confidence 45789999999999999999764
No 2
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]}
Probab=19.55 E-value=15 Score=25.44 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.4
Q ss_pred cccccccccccCCCCCcccccc
Q 034406 25 NWGLPFAAFLDTKKPPELISGS 46 (95)
Q Consensus 25 kWgl~iA~l~D~~rppe~IS~~ 46 (95)
+=+||+-||.|.+-+|+.|+.+
T Consensus 173 ~l~IPvIaivDTn~dp~~vdyp 194 (234)
T d2uubb1 173 KLFIPVIALADTDSDPDLVDYI 194 (234)
T ss_dssp HHTCCEEEEECTTSCGGGCSEE
T ss_pred hhCCCEEEEeecCCCccCCcEE
Confidence 5689999999999999999754
No 3
>d2fhea1 a.45.1.1 (A:81-216) Class alpha GST {Fasciola hepatica [TaxId: 6192]}
Probab=13.38 E-value=46 Score=20.01 Aligned_cols=25 Identities=16% Similarity=0.009 Sum_probs=17.8
Q ss_pred hhHHhhcCCCCCcceeeccccccccc
Q 034406 3 ILKTFWNSPMGPKTTHFWGPAFNWGL 28 (95)
Q Consensus 3 ~~~~~~~~p~GpkT~hFW~P~~kWgl 28 (95)
++++++.|+.=. ...+.+|.++||-
T Consensus 107 ~Ik~yl~S~~~~-~~P~~~~~a~~~~ 131 (136)
T d2fhea1 107 SIKAYMESNRFI-KWPLNGWHAQFGG 131 (136)
T ss_dssp HHHHHHTSSSCC-CSCSSCTTCSSSC
T ss_pred HHHHHHcCcccC-CCCCCCCcCccCC
Confidence 467888875432 3567899999974
No 4
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.00 E-value=49 Score=16.52 Aligned_cols=16 Identities=0% Similarity=0.196 Sum_probs=13.2
Q ss_pred hhHHHHHhHhhhhhhe
Q 034406 48 TGVMCVYSALCMRFAW 63 (95)
Q Consensus 48 t~aL~~~g~i~~R~s~ 63 (95)
.+|+..+|+||.-|.+
T Consensus 7 ~aa~lsfglifvgwgl 22 (32)
T d2e74f1 7 YAALLSFGLIFVGWGL 22 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhHH
Confidence 5788899999988764
No 5
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.53 E-value=38 Score=22.70 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.2
Q ss_pred ccccccccccccCCCCCccccc
Q 034406 24 FNWGLPFAAFLDTKKPPELISG 45 (95)
Q Consensus 24 ~kWgl~iA~l~D~~rppe~IS~ 45 (95)
.|=+||+.|+.|.+-+|+.|+.
T Consensus 130 ~~l~IPvI~ivDTn~~p~~vdy 151 (193)
T d1vi6a_ 130 TAVGIPVVALCDSNNSSADVDL 151 (193)
T ss_dssp HHTTCCEEEEECTTCCCTTCSE
T ss_pred HHcCCCeeeEeccCCCCcccce
Confidence 4668999999999999999864
No 6
>d2q7sa1 c.56.5.9 (A:10-289) N-formylglutamate amidohydrolase {Ralstonia eutropha [TaxId: 106590]}
Probab=7.23 E-value=77 Score=21.21 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=14.7
Q ss_pred ccccccc----cccCCCCCccccccc
Q 034406 26 WGLPFAA----FLDTKKPPELISGSM 47 (95)
Q Consensus 26 Wgl~iA~----l~D~~rppe~IS~~~ 47 (95)
..+++|. +.|+||+|+.++..|
T Consensus 60 ~~~v~a~~SR~vIDlNR~~~d~d~~~ 85 (280)
T d2q7sa1 60 GTLLAATFPRVYIDPNRMLDDIDPAQ 85 (280)
T ss_dssp CEEEEESSCTTTCCTTSCTTCCCGGG
T ss_pred CcEEEecCcceeeecccCcccccccc
Confidence 3445554 468999998876544
No 7
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.44 E-value=35 Score=19.31 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=19.1
Q ss_pred CccccccchhHHHHHhHhhhhhhe
Q 034406 40 PELISGSMTGVMCVYSALCMRFAW 63 (95)
Q Consensus 40 pe~IS~~~t~aL~~~g~i~~R~s~ 63 (95)
+|.|-..-|.+|++-|.+++=|++
T Consensus 27 ~D~~LYr~Tm~L~~~G~~~s~~~l 50 (58)
T d1v54j_ 27 TDNILYRVTMTLCLGGTLYSLYCL 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888999999999887654
No 8
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.22 E-value=52 Score=21.32 Aligned_cols=39 Identities=18% Similarity=0.026 Sum_probs=22.8
Q ss_pred cCCCCCccccccchhHHHHHhHhhhhhheeeccchhhhhhh
Q 034406 35 DTKKPPELISGSMTGVMCVYSALCMRFAWMVQPRNLHLLAC 75 (95)
Q Consensus 35 D~~rppe~IS~~~t~aL~~~g~i~~R~s~~I~P~N~~L~~~ 75 (95)
|+=-|.|.+++.+. |.=-+-==+=||.+|+|+|..+=+|
T Consensus 39 d~lf~n~dv~l~~a--L~~vs~~G~~faIlVt~qn~~~~S~ 77 (130)
T d1v95a_ 39 DLIFLNTEVSLSQA--LEDVSRGGSPFAIVITQQHQIHRSC 77 (130)
T ss_dssp EEEECTTSSCHHHH--HHHHHHHTCSEEEEECHHHHHHTEE
T ss_pred EEEecCCcccHHHH--HHHHHhCCCceEEEEeccchhhcce
Confidence 34345555554443 3222222233899999999988766
No 9
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}
Probab=6.09 E-value=64 Score=19.08 Aligned_cols=14 Identities=36% Similarity=0.088 Sum_probs=11.5
Q ss_pred ccCCCCCccccccch
Q 034406 34 LDTKKPPELISGSMT 48 (95)
Q Consensus 34 ~D~~rppe~IS~~~t 48 (95)
+ +.||||.||+..-
T Consensus 58 y-Lar~p~~Itl~dI 71 (127)
T d1xd7a_ 58 S-LKKDPADISLLEV 71 (127)
T ss_dssp E-ESSCGGGCBHHHH
T ss_pred c-ccCCHHhCcHHHH
Confidence 5 8999999987654
No 10
>d1duga1 a.45.1.1 (A:81-220) Class alpha GST {Schistosoma japonicum [TaxId: 6182]}
Probab=5.72 E-value=1.5e+02 Score=17.63 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=13.6
Q ss_pred hhHHhhcCC---CCCcceeecccccccc
Q 034406 3 ILKTFWNSP---MGPKTTHFWGPAFNWG 27 (95)
Q Consensus 3 ~~~~~~~~p---~GpkT~hFW~P~~kWg 27 (95)
++++++.|+ ..|.. +|.+|||
T Consensus 107 ~Ik~yl~S~~~~~~P~~----~~~a~~~ 130 (140)
T d1duga1 107 QIDKYLKSSKYIAWPLQ----GWQATFG 130 (140)
T ss_dssp HHHHHHTSTTCCCCCSS----CTTCSSS
T ss_pred HHHHHHcCcccccCCCC----CcccccC
Confidence 478888886 34433 5677776
Done!