BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034407
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5E9Z8|LSM1_BOVIN U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2
SV=1
Length = 133
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHL 60
+G L S DQFAN VL ER+ VG Y DIP G++V+RGENVVL+GE+DLE++ P L
Sbjct: 29 IGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTP-L 87
Query: 61 THVSVAEIKRAQKAEREAS 79
VS+ EI Q+ E++
Sbjct: 88 QQVSIEEILEEQRVEQQTK 106
>sp|O15116|LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1
PE=1 SV=1
Length = 133
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHL 60
+G L S DQFAN VL ER+ VG Y DIP G++V+RGENVVL+GE+DLE++ P L
Sbjct: 29 IGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTP-L 87
Query: 61 THVSVAEIKRAQKAEREAS 79
VS+ EI Q+ E++
Sbjct: 88 QQVSIEEILEEQRVEQQTK 106
>sp|Q8VC85|LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1
PE=2 SV=1
Length = 133
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 57/86 (66%), Gaps = 5/86 (5%)
Query: 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHL 60
+G L S DQFAN VL ER+ VG Y DIP G++V+RGENVVL+GE+DLE++ P L
Sbjct: 29 IGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTP-L 87
Query: 61 THVSVAEI---KRAQKAER-EASDLK 82
VS+ EI +R Q+ R EA LK
Sbjct: 88 QQVSIEEILEEQRVQQQTRLEAEKLK 113
>sp|Q54W83|LSM1_DICDI Probable U6 snRNA-associated Sm-like protein LSm1
OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1
Length = 129
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 48/71 (67%)
Query: 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHL 60
+G + +FDQFAN VL+ ER+ VGD Y D LGL+ IRG+NVV++GE+D +++ L
Sbjct: 24 IGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVILGEIDPDKEVQEKKL 83
Query: 61 THVSVAEIKRA 71
+S EI +A
Sbjct: 84 KKISWDEITKA 94
>sp|P87173|LSM1_SCHPO U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm1 PE=3 SV=1
Length = 140
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 43/54 (79%)
Query: 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERD 54
+G L SFDQFAN +L+ ER+ V D+Y DI G+Y++RGENVVL+GELDL+++
Sbjct: 35 IGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGENVVLLGELDLDKE 88
>sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LSM1 PE=1 SV=1
Length = 172
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 1 MGTLCSFDQFANAVLEGACERVIVG--DLYCDIPLGLYVIRGENVVLIGELDLERDELP 57
G L +FDQ+AN +L+ ER+ + Y + G+++IRGENVV++GE+D+++++ P
Sbjct: 65 FGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGENVVMLGEVDIDKEDQP 123
>sp|Q5RCP3|NAA38_PONAB N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Pongo
abelii GN=NAA38 PE=3 SV=3
Length = 96
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 1 MGTLCSFDQFANAVLEGACERVIVGDLYCD-IPLGLYVIRGENVVLIGELDLERD 54
+GTL FDQ N +L+ + ERV + + LGLY++RG+NV +IGE+D E D
Sbjct: 24 VGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETD 78
>sp|Q6ZWM4|NAA38_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus
musculus GN=Naa38 PE=3 SV=3
Length = 96
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 1 MGTLCSFDQFANAVLEGACERVIVGDLYCD-IPLGLYVIRGENVVLIGELDLERD 54
+GTL FDQ N +L+ + ERV + + LGLY++RG+NV +IGE+D E D
Sbjct: 24 VGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETD 78
>sp|O95777|NAA38_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo
sapiens GN=NAA38 PE=1 SV=3
Length = 96
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 1 MGTLCSFDQFANAVLEGACERVIVGDLYCD-IPLGLYVIRGENVVLIGELDLERD 54
+GTL FDQ N +L+ + ERV + + LGLY++RG+NV +IGE+D E D
Sbjct: 24 VGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETD 78
>sp|Q3ZCE0|NAA38_BOVIN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Bos
taurus GN=NAA38 PE=3 SV=3
Length = 96
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 1 MGTLCSFDQFANAVLEGACERVIVGDLYCD-IPLGLYVIRGENVVLIGELDLERD 54
+GTL FDQ N +L+ + ERV + + LGLY++RG+NV +IGE+D E D
Sbjct: 24 VGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETD 78
>sp|O74483|LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm8 PE=3 SV=1
Length = 94
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 11/73 (15%)
Query: 1 MGTLCSFDQFANAVLEGACERVIVGDLYCD-IPLGLYVIRGENVVLIG----ELDLE--- 52
+G+L FD N +L + ER+I D + IPLG+Y++RGENV ++G ELD E
Sbjct: 22 LGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRGENVAMVGLVNEELDSEIEW 81
Query: 53 ---RDELPPHLTH 62
R E P + H
Sbjct: 82 TKIRGEAIPDVVH 94
>sp|Q1ZXD5|NAA38_DICDI N-alpha-acetyltransferase 38, NatC auxiliary subunit
OS=Dictyostelium discoideum GN=lsm8 PE=3 SV=1
Length = 94
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDE 55
+GTL DQ N VLE ERV + IPLG+++I+G++V +IGE+D E D+
Sbjct: 23 IGTLRGIDQTINVVLEKCHERVYSDEGIEVIPLGVHLIKGDDVAVIGEVDDELDK 77
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G OS=Arabidopsis
thaliana GN=At2g23930 PE=2 SV=1
Length = 80
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 2 GTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELD 50
GTL FDQF N V++ E + G+ DI G+ VIRG ++V + L+
Sbjct: 30 GTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGNSIVTVEALE 74
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELD 50
+GTL FDQF N V++ E + G+ DI G+ VIRG +VV + L+
Sbjct: 29 VGTLRGFDQFMNLVVDNTVE--VNGNEKNDI--GMVVIRGNSVVTVEALE 74
>sp|B7VM91|STHA_VIBSL Soluble pyridine nucleotide transhydrogenase OS=Vibrio splendidus
(strain LGP32) GN=sthA PE=3 SV=1
Length = 466
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 6 SFDQ---FANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHLTH 62
++DQ A AV++G ER ++ D IP G+Y I + V E +L ++P +
Sbjct: 322 AYDQGRFVAQAVVKGEAERHLIED----IPTGIYTIPEISSVGKTEQELTAAKVPYEVGR 377
Query: 63 VSVAEIKRAQKAEREASDLK 82
S + RAQ A ++ LK
Sbjct: 378 SSFKHLARAQIAGKDIGSLK 397
>sp|Q12330|RUXE_YEAST Small nuclear ribonucleoprotein E OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SME1 PE=1 SV=1
Length = 94
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 2 GTLCSFDQFANAVLEGACERVIVG-----DLYCDIPLGLYVIRGENVVLIGELD 50
G + FD+F N V++ A E + D+ PLG +++G+N+ LI D
Sbjct: 41 GKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94
>sp|O74966|RUXG_SCHPO Small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smg1 PE=1 SV=1
Length = 77
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 2 GTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELD 50
G L +D F N VLE + E + G+ + +G IRG +V++I LD
Sbjct: 29 GVLRGYDIFLNIVLEDSIEEKVDGE---KVKIGSVAIRGNSVIMIETLD 74
>sp|Q87KN5|STHA_VIBPA Soluble pyridine nucleotide transhydrogenase OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=sthA PE=3 SV=1
Length = 466
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 6 SFDQ---FANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHLTH 62
++DQ A A+ +G E ++ D IP G+Y I + V E +L ++P +
Sbjct: 322 AYDQGRFVAQAITKGQAENYLIED----IPTGIYTIPEISSVGKTEQELTAAKVPYEVGR 377
Query: 63 VSVAEIKRAQKAEREASDLK 82
S + RAQ A ++ LK
Sbjct: 378 SSFKHLARAQIAGKDVGSLK 397
>sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G OS=Caenorhabditis
elegans GN=snr-7 PE=3 SV=1
Length = 77
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 2 GTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLI 46
G L FD F N V++ A E G + LG+ VIRG +VV++
Sbjct: 29 GILRGFDPFMNMVIDEAVEYQKDG---GSVNLGMTVIRGNSVVIM 70
>sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1
Length = 113
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 2 GTLCSFDQFANAVLEGACERVIV---GDLYCDI-PLGLYVIRGENVVLIGELD 50
G L FDQ N VL+ E++ G L I LGL V+RG +VLI +D
Sbjct: 48 GILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMD 100
>sp|Q7MQ83|STHA_VIBVY Soluble pyridine nucleotide transhydrogenase OS=Vibrio vulnificus
(strain YJ016) GN=sthA PE=3 SV=1
Length = 466
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 6 SFDQ---FANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHLTH 62
++DQ A A+ +G + G L DIP G+Y I + V E +L ++P +
Sbjct: 322 AYDQGRFVAQAITKGKAD----GYLIDDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGR 377
Query: 63 VSVAEIKRAQKAEREASDLK 82
S + RAQ A ++ LK
Sbjct: 378 SSFKHLARAQIAGKDIGSLK 397
>sp|Q8DD46|STHA_VIBVU Soluble pyridine nucleotide transhydrogenase OS=Vibrio vulnificus
(strain CMCP6) GN=sthA PE=3 SV=1
Length = 466
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 6 SFDQ---FANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHLTH 62
++DQ A A+ +G + G L DIP G+Y I + V E +L ++P +
Sbjct: 322 AYDQGRFVAQAITKGKAD----GYLIDDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGR 377
Query: 63 VSVAEIKRAQKAEREASDLK 82
S + RAQ A ++ LK
Sbjct: 378 SSFKHLARAQIAGKDIGSLK 397
>sp|Q7Z202|CUPC_DICDI Calcium up-regulated protein C OS=Dictyostelium discoideum GN=cupC
PE=2 SV=1
Length = 769
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 1 MGTLCSFDQFANAVLEGACERVIVGDLYC---DIPLGLYVIR--GENVVLIGELDLERDE 55
+ L + D ++ V+ G I Y +IP+G +I GE+ V GELD E ++
Sbjct: 414 LANLINVDMSSDQVVNGDYTDAITSVFYAIISEIPIGGSIIANIGESAVEFGELDAESND 473
Query: 56 LPPHLTHVSVAEI 68
P V+++++
Sbjct: 474 SGPSTYQVTLSKL 486
>sp|C3LPZ2|STHA_VIBCM Soluble pyridine nucleotide transhydrogenase OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=sthA PE=3 SV=1
Length = 466
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 6 SFDQ---FANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHLTH 62
++DQ A A++ G ++ D IP G+Y I + V E +L ++P +
Sbjct: 322 AYDQGRFVAQAIIHGQAAHLLTED----IPTGIYTIPEISSVGRTEQELTAAKVPYEVGR 377
Query: 63 VSVAEIKRAQKAEREASDLK 82
S + RAQ A ++ LK
Sbjct: 378 ASFKHLARAQIAGKDIGSLK 397
>sp|P50529|STHA_VIBCH Soluble pyridine nucleotide transhydrogenase OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=sthA PE=3 SV=2
Length = 466
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 6 SFDQ---FANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHLTH 62
++DQ A A++ G ++ D IP G+Y I + V E +L ++P +
Sbjct: 322 AYDQGRFVAQAIIHGQAAHLLTED----IPTGIYTIPEISSVGRTEQELTAAKVPYEVGR 377
Query: 63 VSVAEIKRAQKAEREASDLK 82
S + RAQ A ++ LK
Sbjct: 378 ASFKHLARAQIAGKDIGSLK 397
>sp|A5F4K5|STHA_VIBC3 Soluble pyridine nucleotide transhydrogenase OS=Vibrio cholerae
serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
GN=sthA PE=3 SV=1
Length = 466
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 6 SFDQ---FANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHLTH 62
++DQ A A++ G ++ D IP G+Y I + V E +L ++P +
Sbjct: 322 AYDQGRFVAQAIIHGQAAHLLTED----IPTGIYTIPEISSVGRTEQELTAAKVPYEVGR 377
Query: 63 VSVAEIKRAQKAEREASDLK 82
S + RAQ A ++ LK
Sbjct: 378 ASFKHLARAQIAGKDIGSLK 397
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.141 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,092,052
Number of Sequences: 539616
Number of extensions: 1277661
Number of successful extensions: 3546
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3526
Number of HSP's gapped (non-prelim): 28
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)