Query 034407
Match_columns 95
No_of_seqs 134 out of 1079
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 03:23:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emk_C U6 snRNA-associated SM- 99.7 3.8E-17 1.3E-21 111.1 5.2 55 1-55 47-105 (113)
2 3bw1_A SMX4 protein, U6 snRNA- 99.7 7.6E-17 2.6E-21 106.3 6.4 55 1-55 34-92 (96)
3 3s6n_E Small nuclear ribonucle 99.6 2.1E-16 7.2E-21 104.1 5.0 48 1-50 44-91 (92)
4 1ljo_A Archaeal SM-like protei 99.6 8.2E-16 2.8E-20 97.1 5.1 48 1-51 30-77 (77)
5 3s6n_G Small nuclear ribonucle 99.6 5.9E-16 2E-20 97.9 4.4 48 1-51 28-75 (76)
6 1h64_1 SnRNP SM-like protein; 99.6 1E-15 3.6E-20 96.1 5.1 48 1-51 28-75 (75)
7 4emk_A U6 snRNA-associated SM- 99.6 1.3E-15 4.3E-20 100.8 5.5 48 1-50 44-91 (94)
8 1i4k_A Putative snRNP SM-like 99.6 1.8E-15 6.2E-20 95.3 5.2 49 1-52 28-76 (77)
9 3s6n_F Small nuclear ribonucle 99.6 1.5E-15 5.3E-20 98.4 4.7 52 1-55 30-81 (86)
10 4emk_B U6 snRNA-associated SM- 99.6 1.3E-15 4.5E-20 96.0 3.8 47 1-50 28-74 (75)
11 1d3b_B Protein (small nuclear 99.6 3.1E-15 1.1E-19 96.9 5.4 53 1-53 28-87 (91)
12 1th7_A SnRNP-2, small nuclear 99.6 3.3E-15 1.1E-19 95.2 5.4 48 1-51 33-80 (81)
13 1i8f_A Putative snRNP SM-like 99.6 6E-15 2E-19 94.1 5.8 46 1-50 35-80 (81)
14 4emg_A Probable U6 snRNA-assoc 99.5 4.2E-15 1.4E-19 97.6 5.1 49 1-49 33-91 (93)
15 2fwk_A U6 snRNA-associated SM- 99.5 4.5E-15 1.5E-19 101.4 5.2 53 1-53 52-116 (121)
16 1n9r_A SMF, small nuclear ribo 99.5 8.9E-15 3E-19 96.3 5.2 47 1-50 46-92 (93)
17 1b34_B Protein (small nuclear 99.5 8.5E-15 2.9E-19 99.6 4.6 52 1-52 53-115 (118)
18 1mgq_A SM-like protein; LSM, R 99.5 1.6E-14 5.4E-19 92.7 4.8 45 1-48 39-83 (83)
19 4emh_A Probable U6 snRNA-assoc 99.5 2.6E-14 9E-19 96.1 5.0 53 1-55 40-92 (105)
20 1b34_A Protein (small nuclear 99.5 4E-14 1.4E-18 96.6 4.8 48 1-51 26-73 (119)
21 1d3b_A Protein (small nuclear 99.5 8.6E-14 2.9E-18 87.9 5.4 47 1-50 29-75 (75)
22 3pgw_B SM B; protein-RNA compl 99.4 1.8E-13 6E-18 103.1 6.0 51 1-51 28-85 (231)
23 1m5q_A SMAP3, small nuclear ri 99.3 6.8E-13 2.3E-17 92.1 3.6 47 1-54 24-70 (130)
24 2y9a_D Small nuclear ribonucle 99.3 3.8E-12 1.3E-16 87.9 5.2 51 1-54 29-79 (126)
25 1y96_A Gemin6, SIP2, GEM-assoc 73.6 5.8 0.0002 25.2 4.4 44 1-53 31-75 (86)
26 2ylb_A Protein HFQ; RNA-bindin 64.7 4.2 0.00014 25.2 2.3 13 2-14 36-48 (74)
27 2y90_A Protein HFQ; RNA-bindin 59.3 5.6 0.00019 26.3 2.3 14 2-15 36-49 (104)
28 2qtx_A Uncharacterized protein 50.6 10 0.00034 23.4 2.2 14 2-15 40-53 (71)
29 3ahu_A Protein HFQ; SM-like mo 48.4 11 0.00039 23.5 2.3 14 2-15 38-51 (78)
30 1u1s_A HFQ protein; SM-like ba 47.5 10 0.00035 24.0 1.9 13 2-14 34-46 (82)
31 1x4r_A PARP14 protein; WWE dom 42.7 2.4 8.1E-05 27.8 -1.7 18 2-19 35-52 (99)
32 1kq1_A HFQ, HOST factor for Q 40.2 18 0.00061 22.4 2.2 15 1-15 33-47 (77)
33 1ycy_A Conserved hypothetical 34.0 50 0.0017 20.2 3.5 39 1-47 30-68 (71)
34 3sb2_A Protein HFQ; SM-like, R 33.7 23 0.00077 22.2 1.9 14 1-14 34-47 (79)
No 1
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.67 E-value=3.8e-17 Score=111.10 Aligned_cols=55 Identities=35% Similarity=0.443 Sum_probs=42.0
Q ss_pred CeeEEEeccccceEecceEEEEecCc----ccceeccceEEEecCcEEEEeeeCCcccC
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGD----LYCDIPLGLYVIRGENVVLIGELDLERDE 55 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~----~~~~~~lG~~lIRGdnIv~I~~~d~~~e~ 55 (95)
+|+|+|||+||||||++|+|++..++ ....+.+|+++|||+||++|+++|.+++-
T Consensus 47 ~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~ee~ 105 (113)
T 4emk_C 47 TGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGSEEI 105 (113)
T ss_dssp EEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC-----
T ss_pred EEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCccccc
Confidence 49999999999999999999875432 13478999999999999999999988863
No 2
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.67 E-value=7.6e-17 Score=106.33 Aligned_cols=55 Identities=31% Similarity=0.407 Sum_probs=43.4
Q ss_pred CeeEEEeccccceEecceEEEEecCc----ccceeccceEEEecCcEEEEeeeCCcccC
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGD----LYCDIPLGLYVIRGENVVLIGELDLERDE 55 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~----~~~~~~lG~~lIRGdnIv~I~~~d~~~e~ 55 (95)
.|+|+|||+||||||++|+|+..... ....+++|.++|||+||++|++.+...+.
T Consensus 34 ~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~~~d~ 92 (96)
T 3bw1_A 34 VGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSEDDDG 92 (96)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC-----
T ss_pred EEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCccccc
Confidence 49999999999999999999876432 12367899999999999999999988775
No 3
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.63 E-value=2.1e-16 Score=104.06 Aligned_cols=48 Identities=27% Similarity=0.474 Sum_probs=41.6
Q ss_pred CeeEEEeccccceEecceEEEEecCcccceeccceEEEecCcEEEEeeeC
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELD 50 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~~~d 50 (95)
.|+|+|||+||||||+||+|+...++ ..+.+|.++|||+||++|++.+
T Consensus 44 ~G~L~gfD~~mNlvL~d~~E~~~~~~--~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 44 EGCIIGFDEYMNLVLDDAEEIHSKTK--SRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp EEEEEEECTTCCEEEEEEEEECSSSC--CEEEEEEEEECGGGEEEEEEC-
T ss_pred EEEEEEEcCcCcEEEeeeEEEecCCC--ceeEcCeEEEeCCEEEEEEeCC
Confidence 49999999999999999999764333 3678999999999999999876
No 4
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.60 E-value=8.2e-16 Score=97.13 Aligned_cols=48 Identities=35% Similarity=0.400 Sum_probs=40.8
Q ss_pred CeeEEEeccccceEecceEEEEecCcccceeccceEEEecCcEEEEeeeCC
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDL 51 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~~~d~ 51 (95)
.|+|+|||+|||++|++|+|+.. +. ..+.+|.++|||+||++|++.|+
T Consensus 30 ~G~L~~~D~~mNlvL~d~~e~~~-~~--~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 30 VGKLEGVDDYMNLYLTNAMECKG-EE--KVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp EEEEEEECTTCCEEEEEEEEEET-TE--EEEEEEEEEECGGGEEEEEEC--
T ss_pred EEEEEEECCcceEEEeeEEEEec-CC--cEeECCeEEEeCCeEEEEEeCCC
Confidence 49999999999999999999763 22 37789999999999999999874
No 5
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.60 E-value=5.9e-16 Score=97.92 Aligned_cols=48 Identities=31% Similarity=0.592 Sum_probs=38.2
Q ss_pred CeeEEEeccccceEecceEEEEecCcccceeccceEEEecCcEEEEeeeCC
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDL 51 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~~~d~ 51 (95)
.|+|.|||+||||+|++|.|+...+ ..+.+|.++|||+||++|+++|.
T Consensus 28 ~G~L~~~D~~mNlvL~~~~e~~~~~---~~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 28 QGILRGFDPFMNLVIDECVEMATSG---QQNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp EEEEEEECTTCCEEEEEEEECCCC-------CBSSEEECSSSEEEEEC---
T ss_pred EEEEEEECCcceEEEeceEEEccCC---cEeEcCEEEECCCeEEEEEeccC
Confidence 4999999999999999999976433 26789999999999999999874
No 6
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.59 E-value=1e-15 Score=96.09 Aligned_cols=48 Identities=31% Similarity=0.275 Sum_probs=40.8
Q ss_pred CeeEEEeccccceEecceEEEEecCcccceeccceEEEecCcEEEEeeeCC
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDL 51 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~~~d~ 51 (95)
.|+|.|||+|||++|++|+|+... ...+.+|.++|||+||++|++.|+
T Consensus 28 ~G~L~~~D~~mNlvL~d~~e~~~~---~~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 28 RGRLIGYDIHLNVVLADAEMIQDG---EVVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp EEEEEEECTTCCEEEEEEEEEETT---EEEEEEEEEEECGGGEEEEEEC--
T ss_pred EEEEEEEeCCCCeEEeeEEEEeeC---CceeECCEEEECCCEEEEEEeCCC
Confidence 499999999999999999997632 237789999999999999999864
No 7
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.59 E-value=1.3e-15 Score=100.80 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=41.4
Q ss_pred CeeEEEeccccceEecceEEEEecCcccceeccceEEEecCcEEEEeeeC
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELD 50 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~~~d 50 (95)
.|+|+|||+||||||+||+|+..... ..+.+|.++|||+||++|++..
T Consensus 44 ~G~L~gfD~~mNlvL~d~~E~~~~~~--~~~~lg~v~IRG~nI~~i~p~~ 91 (94)
T 4emk_A 44 AGTLVGFDDYVNIVLKDVTEYDTVTG--VTEKHSEMLLNGNGMCMLIPGG 91 (94)
T ss_dssp EEEEEEECTTCCEEEEEEEEEETTTC--CEEEEEEEEECSTTEEEEEECC
T ss_pred EEEEEEEcccCCeEeeeEEEEecCCC--cEeEcCEEEEcCCEEEEEEeCC
Confidence 49999999999999999999863222 3778999999999999999863
No 8
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.58 E-value=1.8e-15 Score=95.28 Aligned_cols=49 Identities=33% Similarity=0.281 Sum_probs=41.7
Q ss_pred CeeEEEeccccceEecceEEEEecCcccceeccceEEEecCcEEEEeeeCCc
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLE 52 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~~~d~~ 52 (95)
.|+|+|||+|||++|++|+|+.... ..+.+|.++|||+||++|++.|..
T Consensus 28 ~G~L~~~D~~mNlvL~d~~e~~~~~---~~~~lg~v~iRG~~I~~i~~~d~~ 76 (77)
T 1i4k_A 28 RGTLDGYDIHMNLVLLDAEEIQNGE---VVRKVGSVVIRGDTVVFVSPAPGG 76 (77)
T ss_dssp EEEEEEECTTCCEEEEEEEEEETTE---EEEEEEEEEECGGGEEEEEECC--
T ss_pred EEEEEEEcCCCCeEEeeEEEEecCC---cEeECCEEEECCCEEEEEEeCCCC
Confidence 4999999999999999999976422 367899999999999999998764
No 9
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.57 E-value=1.5e-15 Score=98.39 Aligned_cols=52 Identities=31% Similarity=0.395 Sum_probs=41.5
Q ss_pred CeeEEEeccccceEecceEEEEecCcccceeccceEEEecCcEEEEeeeCCcccC
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDE 55 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~~~d~~~e~ 55 (95)
.|+|+|||+||||+|++|+|+. .++ ....+|.++|||+||++|++.|...++
T Consensus 30 ~G~L~~~D~~mNlvL~d~~e~~-~g~--~~~~lg~v~IRG~nI~~i~~~d~~~~~ 81 (86)
T 3s6n_F 30 KGYLVSVDGYMNMQLANTEEYI-DGA--LSGHLGEVLIRCNNVLYIRGVEEEEED 81 (86)
T ss_dssp EEEEEEECTTCCEEEEEEEEEE-TTE--EEEEESSEEECGGGEEEEEECC-----
T ss_pred EEEEEEEcCceEEEEeeEEEEc-CCc--eeeEccEEEEeCCeEEEEEeCCccccc
Confidence 4999999999999999999965 232 367899999999999999999988763
No 10
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.57 E-value=1.3e-15 Score=95.97 Aligned_cols=47 Identities=36% Similarity=0.468 Sum_probs=40.5
Q ss_pred CeeEEEeccccceEecceEEEEecCcccceeccceEEEecCcEEEEeeeC
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELD 50 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~~~d 50 (95)
.|+|.|||+||||+|++|+|+.. ++ ....+|.++|||+||++|+++|
T Consensus 28 ~G~L~~~D~~mNlvL~d~~e~~~-~~--~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 28 KGILSCLDGYMNLALERTEEYVN-GK--KTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp EEEEEEECTTCEEEEEEEEEEET-TE--EEEEEEEEEEEGGGSSEEEEC-
T ss_pred EEEEEEEcCcceEEEccEEEEec-CC--cccEecEEEEcCCeEEEEEecC
Confidence 49999999999999999999753 22 3678999999999999999986
No 11
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.56 E-value=3.1e-15 Score=96.90 Aligned_cols=53 Identities=28% Similarity=0.290 Sum_probs=43.1
Q ss_pred CeeEEEeccccceEecceEEEEe--cC-----cccceeccceEEEecCcEEEEeeeCCcc
Q 034407 1 MGTLCSFDQFANAVLEGACERVI--VG-----DLYCDIPLGLYVIRGENVVLIGELDLER 53 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~--~~-----~~~~~~~lG~~lIRGdnIv~I~~~d~~~ 53 (95)
+|+|+|||+||||||++|+|+.. .. .....+.+|.++|||+||++|+..+.-.
T Consensus 28 ~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~~~~~ 87 (91)
T 1d3b_B 28 IGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPP 87 (91)
T ss_dssp EEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEEECCC
T ss_pred EEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcCCCCC
Confidence 49999999999999999999532 11 1234778999999999999999876543
No 12
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.56 E-value=3.3e-15 Score=95.21 Aligned_cols=48 Identities=44% Similarity=0.551 Sum_probs=40.9
Q ss_pred CeeEEEeccccceEecceEEEEecCcccceeccceEEEecCcEEEEeeeCC
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDL 51 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~~~d~ 51 (95)
.|+|+|||+||||+|++|+|+.... ..+.+|.++|||+||++|++.|+
T Consensus 33 ~G~L~~~D~~mNlvL~d~~e~~~~~---~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 33 RGMLRSYDQHMNLVLSDSEEIQSDG---SGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp EEEEEEECTTCCEEEEEEEEECSSS---CEEEEEEEEECGGGEEEEEEC--
T ss_pred EEEEEEEcCCCCEEEccEEEEecCC---ceeECCEEEECCCEEEEEEecCC
Confidence 4999999999999999999975332 36789999999999999999874
No 13
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.55 E-value=6e-15 Score=94.15 Aligned_cols=46 Identities=41% Similarity=0.530 Sum_probs=40.9
Q ss_pred CeeEEEeccccceEecceEEEEecCcccceeccceEEEecCcEEEEeeeC
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELD 50 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~~~d 50 (95)
.|+|+|||+||||+|++|+|+ .+. ..+.+|.++|||+||++|++.|
T Consensus 35 ~G~L~~~D~~mNlvL~d~~e~--~~~--~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 35 RGILRSFDQHVNLLLEDAEEI--IDG--NVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp EEEEEEECTTCCEEEEEEEEE--ETT--EEEEEEEEEECGGGEEEEEECC
T ss_pred EEEEEEEcCCCeeEEccEEEE--cCC--cccCCCEEEECCCEEEEEEeCC
Confidence 499999999999999999997 232 4788999999999999999876
No 14
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.55 E-value=4.2e-15 Score=97.62 Aligned_cols=49 Identities=29% Similarity=0.386 Sum_probs=40.3
Q ss_pred CeeEEEeccccceEecceEEEEecC---cc-------cceeccceEEEecCcEEEEeee
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVG---DL-------YCDIPLGLYVIRGENVVLIGEL 49 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~---~~-------~~~~~lG~~lIRGdnIv~I~~~ 49 (95)
.|+|+|||+||||||++|+|+.... .. ...+.+|+++|||+||++|++.
T Consensus 33 ~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~I~p~ 91 (93)
T 4emg_A 33 NGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPP 91 (93)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEEEECC
T ss_pred EEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEEEEec
Confidence 4999999999999999999987531 11 2367899999999999999874
No 15
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.54 E-value=4.5e-15 Score=101.41 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=42.1
Q ss_pred CeeEEEeccccceEecceEEEEecC-------cccc-----eeccceEEEecCcEEEEeeeCCcc
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVG-------DLYC-----DIPLGLYVIRGENVVLIGELDLER 53 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~-------~~~~-----~~~lG~~lIRGdnIv~I~~~d~~~ 53 (95)
.|+|+|||+||||||++|+|+.... +... .+.+|+++|||+||++|++.+...
T Consensus 52 ~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nVv~I~~~~~~~ 116 (121)
T 2fwk_A 52 SGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAMLVPGGDPD 116 (121)
T ss_dssp CCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGEEEEESSSCC-
T ss_pred EEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEEEEEEecCCCC
Confidence 5999999999999999999987431 1112 578999999999999999987654
No 16
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.53 E-value=8.9e-15 Score=96.26 Aligned_cols=47 Identities=43% Similarity=0.438 Sum_probs=41.0
Q ss_pred CeeEEEeccccceEecceEEEEecCcccceeccceEEEecCcEEEEeeeC
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELD 50 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~~~d 50 (95)
.|+|+|||+||||+|++|+|+. .++ ....+|.++|||+||++|++.+
T Consensus 46 ~G~L~~~D~~MNlvL~d~~E~~-~~~--~~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 46 RGTLVSTDNYFNLQLNEAEEFV-AGV--SHGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp EEEEEECCTTTCEEEEEEEEEE-TTE--EEEECCSEEECGGGEEEEEECC
T ss_pred EEEEEEEccccEEEEeeEEEEc-CCC--eEeEcCEEEEcCCeEEEEEeCC
Confidence 4999999999999999999975 232 3678999999999999999876
No 17
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.52 E-value=8.5e-15 Score=99.58 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=40.0
Q ss_pred CeeEEEeccccceEecceEEEEecCcc-----------cceeccceEEEecCcEEEEeeeCCc
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDL-----------YCDIPLGLYVIRGENVVLIGELDLE 52 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~-----------~~~~~lG~~lIRGdnIv~I~~~d~~ 52 (95)
.|+|+|||+||||||+||+|+...... ...+.+|.++|||+||++|++.+..
T Consensus 53 ~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~nVv~I~~~~~~ 115 (118)
T 1b34_B 53 LGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLI 115 (118)
T ss_dssp EEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGGEEEEEECCCC
T ss_pred EEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCEEEEEEeCchh
Confidence 499999999999999999997643210 1245799999999999999998753
No 18
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.50 E-value=1.6e-14 Score=92.66 Aligned_cols=45 Identities=40% Similarity=0.460 Sum_probs=39.3
Q ss_pred CeeEEEeccccceEecceEEEEecCcccceeccceEEEecCcEEEEee
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGE 48 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~~ 48 (95)
.|+|.|||+|||++|++|+|+... . ..+.+|.++|||+||++|.+
T Consensus 39 ~G~L~~~D~~mNlvL~d~~e~~~~-~--~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 39 RGVLKSFDLHMNLVLNDAEELEDG-E--VTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp EEEEEEECTTCCEEEEEEEEEETT-E--EEEEEEEEEECGGGEEEEEC
T ss_pred EEEEEEECCCceeEEccEEEEecC-C--cccCCCEEEECCCEEEEEEC
Confidence 499999999999999999997632 2 37789999999999999975
No 19
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.48 E-value=2.6e-14 Score=96.09 Aligned_cols=53 Identities=25% Similarity=0.238 Sum_probs=39.8
Q ss_pred CeeEEEeccccceEecceEEEEecCcccceeccceEEEecCcEEEEeeeCCcccC
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDE 55 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~~~d~~~e~ 55 (95)
.|+|.|||+||||+|++|+|....++ ....+|.++|||+||++|+..|...+.
T Consensus 40 ~G~L~~~D~~MNlvL~d~~e~~~dg~--~~~~lg~v~IRG~nI~~I~~pd~l~d~ 92 (105)
T 4emh_A 40 NGHLENCDNYMNLTLREVIRTMPDGD--KFFRLPECYIRGNNIKYLRIQDEVLSQ 92 (105)
T ss_dssp EEEEEEECTTCCEEEEEEEEECTTSC--EEEEEEEEEECGGGEEEEEC-------
T ss_pred EEEEEEEcCCceEEEEEEEEEccCCc--eeeEcCeEEEeCCeEEEEecCHHHhhh
Confidence 49999999999999999999643332 256899999999999999999988864
No 20
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.46 E-value=4e-14 Score=96.56 Aligned_cols=48 Identities=23% Similarity=0.177 Sum_probs=41.8
Q ss_pred CeeEEEeccccceEecceEEEEecCcccceeccceEEEecCcEEEEeeeCC
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDL 51 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~~~d~ 51 (95)
.|+|.|||+||||+|++|+|+.... ....+|.++|||+||++|.+.|.
T Consensus 26 ~G~L~~~D~~MNlvL~d~~e~~~~~---~~~~lg~v~IRG~nI~~I~~pd~ 73 (119)
T 1b34_A 26 HGTITGVDVSMNTHLKAVKMTLKNR---EPVQLETLSIRGNNIRYFILPDS 73 (119)
T ss_dssp EEEEEEECTTCCEEEEEEEEECTTS---CCEEEEEEEECGGGEEEEECCTT
T ss_pred EEEEEEEcccceEEeccEEEecCCC---ceeEcceEEEcCCeEEEEEeccc
Confidence 4999999999999999999975322 25789999999999999999876
No 21
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.45 E-value=8.6e-14 Score=87.91 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=40.2
Q ss_pred CeeEEEeccccceEecceEEEEecCcccceeccceEEEecCcEEEEeeeC
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELD 50 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~~~d 50 (95)
.|+|.|||+|||++|++|+|....+ ....+|.++|||+||.+|...|
T Consensus 29 ~G~L~~~D~~MNl~L~~~~e~~~~~---~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 29 RGKLIEAEDNMNCQMSNITVTYRDG---RVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp EEEEEEECTTCCEEEEEEEEECTTS---CEEEEEEEEECGGGEEEEEECC
T ss_pred EEEEEEEccceeEEEEeEEEECCCC---cEEEcCeEEEeCCEEEEEEcCC
Confidence 3999999999999999999965222 2678999999999999998754
No 22
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.42 E-value=1.8e-13 Score=103.11 Aligned_cols=51 Identities=29% Similarity=0.308 Sum_probs=42.1
Q ss_pred CeeEEEeccccceEecceEEEEe-cC------cccceeccceEEEecCcEEEEeeeCC
Q 034407 1 MGTLCSFDQFANAVLEGACERVI-VG------DLYCDIPLGLYVIRGENVVLIGELDL 51 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~-~~------~~~~~~~lG~~lIRGdnIv~I~~~d~ 51 (95)
+|+|+|||+||||||+||+|+.. .. .....+.+|+++|||+||++|+..+.
T Consensus 28 ~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve~p 85 (231)
T 3pgw_B 28 IGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGP 85 (231)
T ss_pred EEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEecCC
Confidence 59999999999999999999764 11 12357899999999999999986544
No 23
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.32 E-value=6.8e-13 Score=92.13 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=41.4
Q ss_pred CeeEEEeccccceEecceEEEEecCcccceeccceEEEecCcEEEEeeeCCccc
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERD 54 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~~~d~~~e 54 (95)
.|+|.|||+||||+|++|+|+. ...+|.++|||+||++|++.+...+
T Consensus 24 ~G~L~~~D~~MNlvL~d~~E~~-------~~~lg~v~IRG~nI~~I~~~d~~~d 70 (130)
T 1m5q_A 24 KGVLHAVDNQLNIVLANASNKA-------GEKFNRVFIMYRYIVHIDSTERRID 70 (130)
T ss_dssp EEEEEEECTTCCEEEEEEECTT-------CCEEEEEEECGGGEEEEEECCCCCC
T ss_pred EEEEEEEcccceeEEeeEEEEc-------CCEeceEEEeCCeEEEEEcCCcccC
Confidence 4999999999999999999951 2478999999999999999987754
No 24
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.27 E-value=3.8e-12 Score=87.94 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=42.4
Q ss_pred CeeEEEeccccceEecceEEEEecCcccceeccceEEEecCcEEEEeeeCCccc
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERD 54 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~~~d~~~e 54 (95)
.|+|.+||+||||+|++|+|....+ ....+|.++|||+||.+|...|.-..
T Consensus 29 ~G~L~~~D~~MNi~L~dv~e~~~~g---~~~~l~~v~IRGnnI~~I~lpd~l~~ 79 (126)
T 2y9a_D 29 RGKLIEAEDNMNCQMSNITVTYRDG---RVAQLEQVYIRGSKIRFLILPDMLKN 79 (126)
T ss_dssp EEEEEEECTTSCEEEEEEEEECTTS---CCEEEEEEEECGGGEEEEECCSSCSS
T ss_pred EEEEEEEcCceEEEEeeEEEEcCCC---cEeecccEEEeCCEEEEEEccccccc
Confidence 4999999999999999999964322 26789999999999999997665544
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=73.55 E-value=5.8 Score=25.24 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=33.4
Q ss_pred CeeEEEec-cccceEecceEEEEecCcccceeccceEEEecCcEEEEeeeCCcc
Q 034407 1 MGTLCSFD-QFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLER 53 (95)
Q Consensus 1 iG~L~gfD-q~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~~~d~~~ 53 (95)
.|+|.+|| .-.|+||.++-| ++ .+-..+|-|.-|.-|..+....
T Consensus 31 ~G~l~tvDp~s~sIvL~n~~~----~~-----~~~~~iI~G~aI~eI~v~~~~~ 75 (86)
T 1y96_A 31 KGWVLTTDPVSANIVLVNFLE----DG-----SMSVTGIMGHAVQTVETMNEGD 75 (86)
T ss_dssp EEEEEEECTTTCCEEEEEECT----TS-----CEEEEEECGGGEEEEEEEECCC
T ss_pred EEEEEEECCCceEEEEeeccc----CC-----eEEEEEEecceEEEEEEecchh
Confidence 39999999 779999999811 22 3467899999988887765544
No 26
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=64.66 E-value=4.2 Score=25.17 Aligned_cols=13 Identities=46% Similarity=0.715 Sum_probs=10.9
Q ss_pred eeEEEeccccceE
Q 034407 2 GTLCSFDQFANAV 14 (95)
Q Consensus 2 G~L~gfDq~mNLV 14 (95)
|.+.+||+|+=++
T Consensus 36 G~I~~fD~f~vlL 48 (74)
T 2ylb_A 36 GQIESFDQFVILL 48 (74)
T ss_dssp EEEEEECSSEEEE
T ss_pred EEEEEECCcEEEE
Confidence 8999999999443
No 27
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=59.34 E-value=5.6 Score=26.27 Aligned_cols=14 Identities=43% Similarity=0.615 Sum_probs=11.5
Q ss_pred eeEEEeccccceEe
Q 034407 2 GTLCSFDQFANAVL 15 (95)
Q Consensus 2 G~L~gfDq~mNLVL 15 (95)
|.+.+||+|+=++-
T Consensus 36 G~I~~fD~f~VlL~ 49 (104)
T 2y90_A 36 GQIESFDQFVILLK 49 (104)
T ss_dssp EEEEEECSSEEEEE
T ss_pred EEEEEECCcEEEEE
Confidence 89999999995443
No 28
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=50.58 E-value=10 Score=23.37 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=11.6
Q ss_pred eeEEEeccccceEe
Q 034407 2 GTLCSFDQFANAVL 15 (95)
Q Consensus 2 G~L~gfDq~mNLVL 15 (95)
|.+.|||+|+=++-
T Consensus 40 G~I~~fD~ftVll~ 53 (71)
T 2qtx_A 40 AEVTGVSNYEIMVK 53 (71)
T ss_dssp EEEEEECSSEEEEE
T ss_pred EEEEEEcceEEEEE
Confidence 89999999995553
No 29
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=48.43 E-value=11 Score=23.50 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=11.6
Q ss_pred eeEEEeccccceEe
Q 034407 2 GTLCSFDQFANAVL 15 (95)
Q Consensus 2 G~L~gfDq~mNLVL 15 (95)
|.+.|||+|+=++-
T Consensus 38 G~I~~fD~f~VlL~ 51 (78)
T 3ahu_A 38 GQVKGFDNFTVLLE 51 (78)
T ss_dssp EEEEEECSSEEEEE
T ss_pred EEEEEEcceEEEEE
Confidence 89999999995553
No 30
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=47.45 E-value=10 Score=24.01 Aligned_cols=13 Identities=46% Similarity=0.715 Sum_probs=11.1
Q ss_pred eeEEEeccccceE
Q 034407 2 GTLCSFDQFANAV 14 (95)
Q Consensus 2 G~L~gfDq~mNLV 14 (95)
|.+.|||+|+=|+
T Consensus 34 G~I~~fD~ftVlL 46 (82)
T 1u1s_A 34 GQIESFDQFVILL 46 (82)
T ss_dssp EEEEEECSSEEEE
T ss_pred EEEEEEcceEEEE
Confidence 8999999999444
No 31
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=42.73 E-value=2.4 Score=27.83 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=16.3
Q ss_pred eeEEEeccccceEecceE
Q 034407 2 GTLCSFDQFANAVLEGAC 19 (95)
Q Consensus 2 G~L~gfDq~mNLVL~d~~ 19 (95)
|++..||.-+|+.|++|.
T Consensus 35 ~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 35 NITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SCEEECCTTHHHHHHHHH
T ss_pred CeEeechHHHHHHHHHHH
Confidence 678999999999999875
No 32
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=40.21 E-value=18 Score=22.41 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=12.0
Q ss_pred CeeEEEeccccceEe
Q 034407 1 MGTLCSFDQFANAVL 15 (95)
Q Consensus 1 iG~L~gfDq~mNLVL 15 (95)
.|.+.|||+|+=++-
T Consensus 33 ~G~I~~fD~f~VlL~ 47 (77)
T 1kq1_A 33 KGVIEEYDKYVVSLN 47 (77)
T ss_dssp EEEEEEECSSEEEEE
T ss_pred EEEEEEECCcEEEEE
Confidence 389999999995553
No 33
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=34.02 E-value=50 Score=20.19 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=25.3
Q ss_pred CeeEEEeccccceEecceEEEEecCcccceeccceEEEecCcEEEEe
Q 034407 1 MGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIG 47 (95)
Q Consensus 1 iG~L~gfDq~mNLVL~d~~Eri~~~~~~~~~~lG~~lIRGdnIv~I~ 47 (95)
+|+|.-||.-. |.|.|++.++-+..+ .++++=+.|-.|-
T Consensus 30 tGiledFDeEv-iLL~dV~D~~GNk~k-------~liv~idDinWim 68 (71)
T 1ycy_A 30 TGTLEDFDEEV-ILLKDVVDVIGNRGK-------QMLIGLEDINWIM 68 (71)
T ss_dssp EEEEEEECSSE-EEEEEEEETTEEEEE-------EEEEEGGGEEEEE
T ss_pred eeehhhcCcce-eehhhHHHHhccccc-------eeEEEeccceEEE
Confidence 58999999976 778888875432211 3556656655553
No 34
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=33.69 E-value=23 Score=22.15 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=11.4
Q ss_pred CeeEEEeccccceE
Q 034407 1 MGTLCSFDQFANAV 14 (95)
Q Consensus 1 iG~L~gfDq~mNLV 14 (95)
.|.+.|||+|+=++
T Consensus 34 ~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 34 QGHVESFDQYVVLL 47 (79)
T ss_dssp EEEEEEECSSEEEE
T ss_pred EEEEEEECCcEEEE
Confidence 38999999999443
Done!