BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034408
         (95 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3T5Y|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae -
           Malonic Acid Covalently Linked To The Catalytic Cystein
           C116
 pdb|3T6S|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae In
           Complex With Coa
 pdb|3T8E|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
           With Cervik
 pdb|3T8E|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
           With Cervik
          Length = 357

 Score = 25.8 bits (55), Expect = 6.0,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 10  LGNTEENDVDGQVKFRQKLWVESKKLW----IVAAPAIFTRFSSFGLNVVSQAFIGHIGA 65
           LG  + +  D  +     LW +   LW     VA  A+     +FGL   +Q   G +GA
Sbjct: 66  LGRGDVDPADVSLVLHSSLWFQGIDLWPAASYVAHEAVGRHVPAFGL---AQRXNGGMGA 122

Query: 66  TQLAAYSL 73
            +LA   L
Sbjct: 123 IELAGAYL 130


>pdb|3S3L|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae
 pdb|3S3L|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae
 pdb|3T5Y|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae -
           Malonic Acid Covalently Linked To The Catalytic Cystein
           C116
 pdb|3T6S|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae In
           Complex With Coa
          Length = 357

 Score = 25.4 bits (54), Expect = 7.3,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 10  LGNTEENDVDGQVKFRQKLWVESKKLW----IVAAPAIFTRFSSFGLNVVSQAFIGHIGA 65
           LG  + +  D  +     LW +   LW     VA  A+     +FGL   +Q   G +GA
Sbjct: 66  LGRGDVDPADVSLVLHSSLWFQGIDLWPAASYVAHEAVGRHVPAFGL---AQRCNGGMGA 122

Query: 66  TQLAAYSL 73
            +LA   L
Sbjct: 123 IELAGAYL 130


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,505,625
Number of Sequences: 62578
Number of extensions: 79096
Number of successful extensions: 137
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 136
Number of HSP's gapped (non-prelim): 3
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)