BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034408
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9USK3|YJ2D_SCHPO Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC4B3.13 PE=3 SV=1
Length = 539
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 4 EIKEKLLGNTEEND-----VDGQVKFRQKLWVESKKLWI-VAAPAIFTRFSSFGLNVVSQ 57
++ L TEEN+ + Q F K W + L I A P + T +G V +
Sbjct: 63 DVSYGALEETEENESIASGLSVQEDFNSKAWWKELTLLIKFATPVVLTSLLQYGEVVTTV 122
Query: 58 AFIGHIGATQLAAYSL 73
+GH+G T+LAA SL
Sbjct: 123 FSLGHLGKTELAAASL 138
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2
SV=1
Length = 507
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 31 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILV 87
ESK LW ++ +I ++ L+ V+ F GH+G+ QLA S+ + A GI++
Sbjct: 51 ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIML 107
>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus
GN=Slc47a1 PE=1 SV=2
Length = 567
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 31 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVL 78
E + L ++A PA + F ++ +S F GH+G +L A +L V+
Sbjct: 34 ELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVI 81
>sp|Q5RFD2|S47A1_PONAB Multidrug and toxin extrusion protein 1 OS=Pongo abelii
GN=SLC47A1 PE=2 SV=1
Length = 570
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 24 FRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVL 78
FR++L + L ++A PA + F ++ +S F GH+G +L A +L V+
Sbjct: 31 FREEL----RALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVI 81
>sp|Q96FL8|S47A1_HUMAN Multidrug and toxin extrusion protein 1 OS=Homo sapiens
GN=SLC47A1 PE=1 SV=1
Length = 570
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 24 FRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVL 78
FR++L + L ++A PA + F ++ +S F GH+G +L A +L V+
Sbjct: 31 FREEL----RALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVI 81
>sp|A7KAU3|S47A2_RABIT Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus
GN=SLC47A2 PE=1 SV=1
Length = 601
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 28 LWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSL 73
W E++ L++++ P + +F VV F GH+G +LA+ +L
Sbjct: 56 FWDEARALFVLSGPLFLFQVLNFLTYVVGTVFCGHLGKVELASVTL 101
>sp|Q5I0E9|S47A1_RAT Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus
GN=Slc47a1 PE=1 SV=1
Length = 566
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 31 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVL 78
E + L ++A PA + F ++ +S F GH+G +L A +L V+
Sbjct: 33 ELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVI 80
>sp|C5BDY7|MDTK_EDWI9 Multidrug resistance protein MdtK OS=Edwardsiella ictaluri
(strain 93-146) GN=mdtK PE=3 SV=1
Length = 457
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 26 QKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLR---FA 82
QK W E++ L +A P I + + + V G + AT +AA ++ ++ L F
Sbjct: 2 QKYWREARSLLALAIPVIIAQIAQTAMGFVDTIMAGSVSATDMAAVAVGTSIWLPTILFG 61
Query: 83 NGILVS 88
+G+L++
Sbjct: 62 HGLLLA 67
>sp|Q0I2G0|CCMA_HAES1 Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Haemophilus somnus (strain 129Pt) GN=ccmA PE=3 SV=1
Length = 217
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 27 KLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHI 63
+LW+ + LWI+ P FT G+NV++Q F H+
Sbjct: 147 RLWLSNAALWILDEP--FTAIDKQGVNVLTQLFEQHV 181
>sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1
PE=2 SV=1
Length = 590
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 23 KFRQKLWVESK----KLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVL 78
K R L V K +L +A P ++ F ++ VS F GH+G T+LA +L V+
Sbjct: 40 KLRSLLPVNYKTEIVELLKLAGPVFISQLMIFLISFVSTVFCGHLGKTELAGVALAIAVI 99
>sp|A7KAU2|S47A1_RABIT Multidrug and toxin extrusion protein 1 OS=Oryctolagus cuniculus
GN=SLC47A1 PE=2 SV=1
Length = 568
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 23 KFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVL 78
FR++L + L ++A PA + F ++ VS F GH+ +L A +L V+
Sbjct: 29 DFREEL----RALLVLACPAFLAQLMVFLISFVSSVFCGHLSKLELNAVTLAIAVI 80
>sp|Q3V050|S47A2_MOUSE Multidrug and toxin extrusion protein 2 OS=Mus musculus
GN=Slc47a2 PE=1 SV=1
Length = 573
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 31 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVL 78
E+ L +A P + F +++VS F GH+G +L A +L +V+
Sbjct: 43 EAAALVALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVV 90
>sp|Q6LTL7|CCMA_PHOPR Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Photobacterium profundum GN=ccmA PE=3 SV=1
Length = 216
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 27 KLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHI 63
+LW+ + KLWI+ P T G+ V+ F+ H+
Sbjct: 154 RLWISNHKLWILDEP--LTAIDKQGVKVLESLFLSHV 188
>sp|Q6FEY7|NORM_ACIAD Probable multidrug resistance protein NorM OS=Acinetobacter sp.
(strain ADP1) GN=norM PE=3 SV=1
Length = 449
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 31 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYS----LVFTVLLRFANGIL 86
E K+L+ + P + T+F+ GL ++ GH+ A LAA + L V+L F+ ++
Sbjct: 10 ELKQLFHLMWPILITQFAQAGLGLIDTIMAGHLSANDLAAIAVGVGLWMPVMLLFSAIMI 69
Query: 87 VST 89
+T
Sbjct: 70 ATT 72
>sp|Q6D5W6|MDTK_ERWCT Multidrug resistance protein MdtK OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=mdtK
PE=3 SV=1
Length = 457
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 26 QKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLR---FA 82
Q+ E++KL +A P I + S + VV G AT +AA ++ ++ L F
Sbjct: 2 QQYLTEARKLSALAVPVIIAQVSQTSMGVVDTIMAGAYSATDMAAVAVGTSIWLPAILFG 61
Query: 83 NGILVS 88
+G+L++
Sbjct: 62 HGLLLA 67
>sp|Q7WJR0|NORM_BORBR Probable multidrug resistance protein NorM OS=Bordetella
bronchiseptica (strain ATCC BAA-588 / NCTC 13252 /
RB50) GN=norM PE=3 SV=1
Length = 460
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 41 PAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSL---VFTVLLRFANGILVST 89
P + T + + V FIG +G+ LAA +L +FT + F G++ +T
Sbjct: 23 PLVLTNLAQMAMTVTDVIFIGRLGSQALAASALGANLFTAIEFFGLGLVAAT 74
>sp|Q7WAK9|NORM_BORPA Probable multidrug resistance protein NorM OS=Bordetella
parapertussis (strain 12822 / ATCC BAA-587 / NCTC
13253) GN=norM PE=3 SV=1
Length = 460
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 41 PAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSL---VFTVLLRFANGILVST 89
P + T + + V FIG +G+ LAA +L +FT + F G++ +T
Sbjct: 23 PLVLTNLAQMAMTVTDVIFIGRLGSQALAASALGANLFTAIEFFGLGLVAAT 74
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,826,037
Number of Sequences: 539616
Number of extensions: 1006225
Number of successful extensions: 3027
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3006
Number of HSP's gapped (non-prelim): 31
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)