Query 034408
Match_columns 95
No_of_seqs 127 out of 1006
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 03:24:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 98.7 6.7E-08 2.3E-12 72.3 8.3 66 27-93 6-71 (460)
2 3mkt_A Multi antimicrobial ext 97.7 3.5E-05 1.2E-09 57.4 5.1 64 29-93 234-297 (460)
3 2zy9_A Mg2+ transporter MGTE; 20.8 2E+02 0.0068 21.9 5.6 27 67-93 443-469 (473)
4 2imu_A Structural polyprotein 11.1 1.9E+02 0.0065 15.6 2.3 18 28-45 3-20 (46)
5 3otr_A Enolase; structural gen 5.4 4.7E+02 0.016 20.4 3.1 24 53-76 87-124 (452)
6 1f8v_D Mature capsid protein g 4.7 4.6E+02 0.016 13.6 1.8 13 27-39 2-14 (40)
7 2bnl_A Modulator protein RSBR; 4.2 4E+02 0.014 17.4 1.6 20 25-44 64-83 (136)
8 2o3l_A Hypothetical protein; s 4.0 7.4E+02 0.025 14.6 3.1 35 28-62 20-54 (85)
9 2o4t_A BH3976 protein; LEFT-ha 3.8 8.4E+02 0.029 14.9 3.1 38 24-62 14-51 (100)
10 1nov_D Nodamura virus coat pro 3.7 6.3E+02 0.022 13.3 2.0 13 27-39 2-14 (44)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=98.68 E-value=6.7e-08 Score=72.25 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034408 27 KLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLF 93 (95)
Q Consensus 27 ~~~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~~~~~~~Gl~~a~ 93 (95)
..+++.|+++++++|.+++++++.+++.+|++++||+|++++++++++.++..+. ..+..|++.+.
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~ 71 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMAL 71 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999986654 44445555543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=97.74 E-value=3.5e-05 Score=57.41 Aligned_cols=64 Identities=17% Similarity=0.082 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034408 29 WVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLF 93 (95)
Q Consensus 29 ~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~~~~~~~Gl~~a~ 93 (95)
++..|+++++++|..++++.......+|+.+++++|+.++|+.++++.+..+. ..+..|++.+.
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~ 297 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAV 297 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999998766 45555665553
No 3
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=20.79 E-value=2e+02 Score=21.91 Aligned_cols=27 Identities=26% Similarity=0.091 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034408 67 QLAAYSLVFTVLLRFANGILVSTLYLF 93 (95)
Q Consensus 67 aLAavsla~~~~~~~~~~~~~Gl~~a~ 93 (95)
++++.=+..++.-++++-+.+|++..|
T Consensus 443 a~~s~p~itt~~D~~g~~~~~~~a~~~ 469 (473)
T 2zy9_A 443 ALVSNPLVATLSDVTGLLIYLSVARLL 469 (473)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHH
Confidence 444444444454455566666665544
No 4
>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic}
Probab=11.08 E-value=1.9e+02 Score=15.58 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034408 28 LWVESKKLWIVAAPAIFT 45 (95)
Q Consensus 28 ~~~e~k~ll~la~P~ils 45 (95)
+....|.+.|++.|++=+
T Consensus 3 ~~Diir~irr~a~PVvsT 20 (46)
T 2imu_A 3 FKDIIRAIRRIAVPVVST 20 (46)
T ss_dssp HHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhc
Confidence 345678888888887533
No 5
>3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii}
Probab=5.40 E-value=4.7e+02 Score=20.40 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=18.6
Q ss_pred HHHHHHHH--------------hhcChhHHHHHHHHHH
Q 034408 53 NVVSQAFI--------------GHIGATQLAAYSLVFT 76 (95)
Q Consensus 53 ~ivdtifv--------------G~lG~~aLAavsla~~ 76 (95)
.-+|.+|+ +++|.+++-|||++..
T Consensus 87 ~~iD~~m~~~lDgT~n~~~~~ks~lGaNail~vSlAva 124 (452)
T 3otr_A 87 KGIDMLMVEQLDGTKNEWGYSKSKLGANAILGVSIACC 124 (452)
T ss_dssp HHHHHHHHHTTTCCEETTEECCTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcccccccccCcchhhHHHHHHH
Confidence 35788998 5789998888887664
No 6
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=4.73 E-value=4.6e+02 Score=13.63 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHH
Q 034408 27 KLWVESKKLWIVA 39 (95)
Q Consensus 27 ~~~~e~k~ll~la 39 (95)
..|+..|+++|-+
T Consensus 2 ~mWErVk~ilks~ 14 (40)
T 1f8v_D 2 KFWEGVLRVLNQI 14 (40)
T ss_dssp HHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHH
Confidence 4677778887754
No 7
>2bnl_A Modulator protein RSBR; stress-response, stress response, phosphorylation; 2.0A {Bacillus subtilis}
Probab=4.15 E-value=4e+02 Score=17.41 Aligned_cols=20 Identities=5% Similarity=0.001 Sum_probs=14.1
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 034408 25 RQKLWVESKKLWIVAAPAIF 44 (95)
Q Consensus 25 ~~~~~~e~k~ll~la~P~il 44 (95)
+.+.-+-.-++.+++||+.+
T Consensus 64 ~e~l~~Faer~VqlGwpL~~ 83 (136)
T 2bnl_A 64 ESQISELALRAVQIGLSMKF 83 (136)
T ss_dssp HHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHH
Confidence 34445556789999999864
No 8
>2o3l_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.05A {Bacillus cereus} SCOP: a.69.4.1
Probab=4.00 E-value=7.4e+02 Score=14.63 Aligned_cols=35 Identities=3% Similarity=-0.055 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034408 28 LWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGH 62 (95)
Q Consensus 28 ~~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~ 62 (95)
.+.+.++.++...|.-...+..++..++|.+--+.
T Consensus 20 ay~~i~~Yl~~~~~~~g~~~~~il~~lldlfEeaa 54 (85)
T 2o3l_A 20 VFKKIQNYMWNFSAGNGMDMLHIQYELIDLFEAGA 54 (85)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHH
Confidence 34444444445667888888888889999887665
No 9
>2o4t_A BH3976 protein; LEFT-handed superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 1.95A {Bacillus halodurans} SCOP: a.69.4.1
Probab=3.76 E-value=8.4e+02 Score=14.88 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=25.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034408 24 FRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGH 62 (95)
Q Consensus 24 ~~~~~~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~ 62 (95)
++..+-...+.+| ...|.-...+.+++..++|.+--+.
T Consensus 14 Y~~ay~~i~~Yl~-~~~~~~g~~~~~il~~lldlfEeaa 51 (100)
T 2o4t_A 14 YQIVYKEIQKYLF-KVGPVELNEGIGLLSEILGFFEEGA 51 (100)
T ss_dssp HHHHHHHHHHHHH-HHSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHH
Confidence 3333333444455 5567888888888889999887665
No 10
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=3.69 E-value=6.3e+02 Score=13.35 Aligned_cols=13 Identities=8% Similarity=0.414 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHH
Q 034408 27 KLWVESKKLWIVA 39 (95)
Q Consensus 27 ~~~~e~k~ll~la 39 (95)
..|+..|+++|-+
T Consensus 2 ~mWErVk~ilks~ 14 (44)
T 1nov_D 2 TFWERVRSILKSG 14 (44)
T ss_pred cHHHHHHHHHHHH
Confidence 3577777777644
Done!