Query 034408
Match_columns 95
No_of_seqs 127 out of 1006
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 03:24:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034408.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034408hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 12.6 74 0.0054 14.4 3.1 6 83-88 16-21 (32)
2 d3b60a2 f.37.1.1 (A:10-328) Mu 8.6 1.9E+02 0.014 17.2 3.8 7 31-37 3-9 (319)
3 d2yvxa3 f.57.1.1 (A:276-448) M 8.5 2.3E+02 0.017 17.3 4.9 7 83-89 125-131 (173)
4 d2tpta1 a.46.2.1 (A:1-70) Thym 7.6 1.6E+02 0.012 14.9 3.9 26 51-76 22-47 (70)
5 d1uoua1 a.46.2.1 (A:33-100) Th 7.0 1.8E+02 0.013 14.7 3.9 27 50-76 21-47 (68)
6 d1khda1 a.46.2.1 (A:12-80) Ant 4.8 2.5E+02 0.018 14.0 3.0 26 51-76 20-45 (69)
7 d2e74d2 f.23.12.1 (D:12-45) IS 4.7 2.1E+02 0.015 13.1 2.7 16 77-92 7-22 (34)
8 d1q90m_ f.23.25.1 (M:) PetM su 4.3 2.3E+02 0.016 12.9 3.2 8 86-93 17-24 (34)
9 d1c53a_ a.3.1.1 (A:) Cytochrom 4.1 2.1E+02 0.015 14.1 1.6 15 58-72 59-73 (79)
10 d1o17a1 a.46.2.1 (A:1-70) Anth 3.7 3E+02 0.022 13.5 3.5 26 51-76 21-46 (70)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.64 E-value=74 Score=14.43 Aligned_cols=6 Identities=50% Similarity=0.562 Sum_probs=2.2
Q ss_pred HHHHHH
Q 034408 83 NGILVS 88 (95)
Q Consensus 83 ~~~~~G 88 (95)
|++..|
T Consensus 16 fgiavg 21 (32)
T d2e74e1 16 FGIAVG 21 (32)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 333333
No 2
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=8.61 E-value=1.9e+02 Score=17.22 Aligned_cols=7 Identities=29% Similarity=0.862 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 034408 31 ESKKLWI 37 (95)
Q Consensus 31 e~k~ll~ 37 (95)
.+|++|+
T Consensus 3 ~~krl~~ 9 (319)
T d3b60a2 3 TFRRLWP 9 (319)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 3
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=8.45 E-value=2.3e+02 Score=17.33 Aligned_cols=7 Identities=29% Similarity=0.145 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 034408 83 NGILVST 89 (95)
Q Consensus 83 ~~~~~Gl 89 (95)
++..+|.
T Consensus 125 ia~~~G~ 131 (173)
T d2yvxa3 125 FANLVGA 131 (173)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 4
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=7.56 E-value=1.6e+02 Score=14.87 Aligned_cols=26 Identities=15% Similarity=0.027 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHH
Q 034408 51 GLNVVSQAFIGHIGATQLAAYSLVFT 76 (95)
Q Consensus 51 ~~~ivdtifvG~lG~~aLAavsla~~ 76 (95)
+..++|.++=|++.+.+++|.-.+..
T Consensus 22 ~~~~~~~i~~g~~~d~qi~afL~al~ 47 (70)
T d2tpta1 22 IRFFINGIRDNTISEGQIAALAMTIF 47 (70)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45678888889999888888766544
No 5
>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.96 E-value=1.8e+02 Score=14.71 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhcChhHHHHHHHHHH
Q 034408 50 FGLNVVSQAFIGHIGATQLAAYSLVFT 76 (95)
Q Consensus 50 ~~~~ivdtifvG~lG~~aLAavsla~~ 76 (95)
=+..++|.++-|++.+.++++.=++..
T Consensus 21 E~~~~~~~i~~g~~s~~qi~afL~al~ 47 (68)
T d1uoua1 21 DIRGFVAAVVNGSAQGAQIGAMLMAIR 47 (68)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 356678888889999888888765544
No 6
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=4.78 E-value=2.5e+02 Score=13.99 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHH
Q 034408 51 GLNVVSQAFIGHIGATQLAAYSLVFT 76 (95)
Q Consensus 51 ~~~ivdtifvG~lG~~aLAavsla~~ 76 (95)
+..++|.++-|.+.+.++|+.=++..
T Consensus 20 ~~~~~~~i~~g~~~d~qiaafL~al~ 45 (69)
T d1khda1 20 SHQLFAAIVRGELEDSQLAAALISMK 45 (69)
T ss_dssp HHHHHHHHTTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45567777777777777777655443
No 7
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.68 E-value=2.1e+02 Score=13.07 Aligned_cols=16 Identities=13% Similarity=0.036 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 034408 77 VLLRFANGILVSTLYL 92 (95)
Q Consensus 77 ~~~~~~~~~~~Gl~~a 92 (95)
++++.-|+..-|.+.+
T Consensus 7 fmnlltfgt~tg~alg 22 (34)
T d2e74d2 7 FMNLLAFGTVTGVALG 22 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHh
Confidence 4444445555555443
No 8
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.28 E-value=2.3e+02 Score=12.87 Aligned_cols=8 Identities=38% Similarity=0.301 Sum_probs=3.5
Q ss_pred HHHHHhhh
Q 034408 86 LVSTLYLF 93 (95)
Q Consensus 86 ~~Gl~~a~ 93 (95)
+.|++.+|
T Consensus 17 l~glaigf 24 (34)
T d1q90m_ 17 LVGLAIGF 24 (34)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 9
>d1c53a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Desulfovibrio vulgaris, different strains [TaxId: 881]}
Probab=4.06 E-value=2.1e+02 Score=14.10 Aligned_cols=15 Identities=7% Similarity=0.246 Sum_probs=11.2
Q ss_pred HHHhhcChhHHHHHH
Q 034408 58 AFIGHIGATQLAAYS 72 (95)
Q Consensus 58 ifvG~lG~~aLAavs 72 (95)
-|..+|++++++++.
T Consensus 59 ~~~~~Lsd~ei~~l~ 73 (79)
T d1c53a_ 59 NLVKRYSDEEMKAMA 73 (79)
T ss_pred HHHhcCCHHHHHHHH
Confidence 345678999888876
No 10
>d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=3.73 E-value=3e+02 Score=13.54 Aligned_cols=26 Identities=8% Similarity=0.139 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHH
Q 034408 51 GLNVVSQAFIGHIGATQLAAYSLVFT 76 (95)
Q Consensus 51 ~~~ivdtifvG~lG~~aLAavsla~~ 76 (95)
+..+++.++-|++.+.++||.=.+..
T Consensus 21 ~~~~~~~i~~g~~s~~qiaafL~al~ 46 (70)
T d1o17a1 21 AEELAKAIIRGEVPEILVSAILVALR 46 (70)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 44567777888888888877655544
Done!