Query 034410
Match_columns 95
No_of_seqs 146 out of 1507
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00271 hypoxanthine-guanine 100.0 8.6E-35 1.9E-39 212.9 9.8 90 1-95 116-205 (211)
2 COG0634 Hpt Hypoxanthine-guani 100.0 2E-34 4.4E-39 205.9 9.9 88 1-93 91-178 (178)
3 PLN02238 hypoxanthine phosphor 100.0 1.1E-33 2.4E-38 203.3 10.0 90 1-95 95-189 (189)
4 PRK15423 hypoxanthine phosphor 100.0 1.2E-33 2.5E-38 201.9 9.5 84 1-89 90-173 (178)
5 PTZ00149 hypoxanthine phosphor 100.0 3.1E-33 6.8E-38 208.2 9.5 89 1-94 148-236 (241)
6 TIGR01203 HGPRTase hypoxanthin 100.0 3.6E-32 7.7E-37 191.7 9.8 84 1-89 82-165 (166)
7 KOG3367 Hypoxanthine-guanine p 100.0 3.5E-32 7.6E-37 195.3 6.0 89 1-94 123-211 (216)
8 PRK09162 hypoxanthine-guanine 100.0 3.3E-31 7.1E-36 188.8 9.3 85 1-90 95-180 (181)
9 PRK05205 bifunctional pyrimidi 99.7 1.3E-16 2.8E-21 112.9 7.8 60 1-66 93-153 (176)
10 PLN02440 amidophosphoribosyltr 99.6 1.8E-15 3.9E-20 121.6 4.9 69 1-81 338-408 (479)
11 PRK09177 xanthine-guanine phos 99.5 1.5E-13 3.3E-18 96.2 6.8 62 2-77 83-145 (156)
12 COG2236 Predicted phosphoribos 99.3 3.6E-12 7.7E-17 92.6 3.7 70 2-84 86-156 (192)
13 PF00156 Pribosyltran: Phospho 99.2 1.9E-11 4.2E-16 80.1 6.1 39 2-40 87-125 (125)
14 COG2065 PyrR Pyrimidine operon 99.2 2.3E-11 4.9E-16 87.0 6.3 72 1-78 94-169 (179)
15 TIGR00201 comF comF family pro 99.2 7.6E-11 1.6E-15 84.1 6.3 40 1-40 150-189 (190)
16 PRK02277 orotate phosphoribosy 99.1 2.6E-10 5.7E-15 82.4 7.2 46 2-47 139-184 (200)
17 PRK09123 amidophosphoribosyltr 99.1 6.8E-11 1.5E-15 95.4 4.1 69 1-80 358-427 (479)
18 PRK02304 adenine phosphoribosy 99.1 2.3E-10 4.9E-15 80.8 5.9 43 2-44 113-155 (175)
19 PRK11595 DNA utilization prote 99.1 2.9E-10 6.2E-15 83.4 6.6 42 1-42 185-226 (227)
20 TIGR01367 pyrE_Therm orotate p 99.1 3.5E-10 7.5E-15 81.3 6.7 45 2-46 104-148 (187)
21 TIGR01090 apt adenine phosphor 99.1 3.4E-10 7.3E-15 79.6 6.1 43 2-44 108-150 (169)
22 PRK07322 adenine phosphoribosy 99.1 4.1E-10 8.9E-15 80.1 6.3 44 2-45 119-162 (178)
23 PRK08341 amidophosphoribosyltr 99.0 5.5E-10 1.2E-14 89.5 5.5 69 1-80 332-401 (442)
24 PRK09246 amidophosphoribosyltr 99.0 6.3E-10 1.4E-14 90.1 5.4 68 1-79 356-424 (501)
25 PRK13812 orotate phosphoribosy 99.0 1.7E-09 3.6E-14 77.2 6.5 44 2-45 106-149 (176)
26 PRK00455 pyrE orotate phosphor 99.0 1.3E-09 2.9E-14 78.5 6.1 42 2-43 112-153 (202)
27 PRK03092 ribose-phosphate pyro 98.9 6.6E-10 1.4E-14 85.1 4.0 62 1-65 199-264 (304)
28 PRK02458 ribose-phosphate pyro 98.9 7.9E-10 1.7E-14 85.4 4.1 63 1-66 216-282 (323)
29 COG1040 ComFC Predicted amidop 98.9 2.1E-09 4.6E-14 79.3 5.8 40 4-43 185-224 (225)
30 COG0856 Orotate phosphoribosyl 98.9 2.5E-09 5.5E-14 77.4 5.7 51 2-52 140-190 (203)
31 PRK00129 upp uracil phosphorib 98.9 2.7E-09 5.7E-14 77.6 5.6 46 1-46 122-167 (209)
32 PRK13811 orotate phosphoribosy 98.9 4E-09 8.8E-14 74.6 6.3 44 1-44 102-145 (170)
33 PRK04923 ribose-phosphate pyro 98.9 1.3E-09 2.7E-14 84.2 4.0 63 1-65 215-280 (319)
34 TIGR01091 upp uracil phosphori 98.9 2.6E-09 5.6E-14 77.6 5.3 46 1-46 120-165 (207)
35 PRK07199 phosphoribosylpyropho 98.9 3E-09 6.5E-14 81.4 5.9 64 1-66 209-275 (301)
36 TIGR00336 pyrE orotate phospho 98.9 4.1E-09 8.9E-14 74.5 6.1 43 2-44 107-149 (173)
37 PF14572 Pribosyl_synth: Phosp 98.9 3.2E-09 6.9E-14 76.8 5.6 48 1-48 81-131 (184)
38 PRK00934 ribose-phosphate pyro 98.9 3.4E-09 7.3E-14 80.3 5.7 64 1-67 202-269 (285)
39 COG0462 PrsA Phosphoribosylpyr 98.9 1.3E-09 2.8E-14 84.3 3.4 63 2-66 213-278 (314)
40 PRK02269 ribose-phosphate pyro 98.9 4.5E-09 9.8E-14 81.0 5.8 63 1-65 215-280 (320)
41 PLN02297 ribose-phosphate pyro 98.9 1.8E-09 3.9E-14 83.7 3.6 65 1-65 228-299 (326)
42 PRK01259 ribose-phosphate pyro 98.8 5.3E-09 1.2E-13 80.2 5.2 39 1-39 206-244 (309)
43 PTZ00145 phosphoribosylpyropho 98.8 3.5E-09 7.6E-14 85.0 3.9 63 1-65 333-398 (439)
44 PRK06031 phosphoribosyltransfe 98.8 1.3E-08 2.7E-13 75.8 6.6 44 2-45 153-196 (233)
45 PRK13809 orotate phosphoribosy 98.8 1.3E-08 2.7E-13 74.5 6.1 42 2-43 117-158 (206)
46 PLN02293 adenine phosphoribosy 98.8 1.5E-08 3.2E-13 73.0 6.3 43 2-44 124-166 (187)
47 PRK00553 ribose-phosphate pyro 98.8 6.9E-09 1.5E-13 80.5 4.3 66 1-66 216-286 (332)
48 PRK12560 adenine phosphoribosy 98.8 1.8E-08 3.9E-13 72.4 6.0 43 2-44 113-155 (187)
49 PRK06781 amidophosphoribosyltr 98.8 1.2E-08 2.6E-13 82.4 5.3 67 1-78 346-413 (471)
50 PRK07631 amidophosphoribosyltr 98.8 1.3E-08 2.7E-13 82.4 5.4 68 1-79 346-414 (475)
51 PRK08525 amidophosphoribosyltr 98.7 1.4E-08 2.9E-13 81.4 5.0 39 1-39 338-376 (445)
52 TIGR01744 XPRTase xanthine pho 98.7 2.4E-08 5.1E-13 72.2 5.7 42 2-43 116-157 (191)
53 TIGR01134 purF amidophosphorib 98.7 1.8E-08 3.8E-13 80.6 5.4 66 1-78 336-403 (442)
54 PLN02369 ribose-phosphate pyro 98.7 9.1E-09 2E-13 78.8 3.6 63 1-66 200-266 (302)
55 PRK02812 ribose-phosphate pyro 98.7 8.8E-09 1.9E-13 79.9 3.3 63 1-66 228-294 (330)
56 PRK06827 phosphoribosylpyropho 98.7 2.5E-08 5.3E-13 78.9 5.8 41 1-41 262-302 (382)
57 PRK13810 orotate phosphoribosy 98.7 3.6E-08 7.7E-13 71.1 6.1 44 2-45 121-164 (187)
58 PRK06388 amidophosphoribosyltr 98.7 2.6E-08 5.7E-13 80.5 5.2 67 2-79 355-422 (474)
59 PRK08558 adenine phosphoribosy 98.7 4E-08 8.8E-13 73.1 5.8 44 2-45 175-218 (238)
60 PRK09219 xanthine phosphoribos 98.7 4E-08 8.8E-13 70.9 5.6 42 2-43 116-157 (189)
61 PRK07349 amidophosphoribosyltr 98.7 2.7E-08 5.8E-13 80.9 5.2 68 1-79 375-443 (500)
62 PRK05793 amidophosphoribosyltr 98.7 3.5E-08 7.6E-13 79.5 5.6 68 1-79 351-419 (469)
63 PRK07272 amidophosphoribosyltr 98.6 8.7E-08 1.9E-12 77.7 5.1 39 1-39 348-386 (484)
64 COG0461 PyrE Orotate phosphori 98.5 1.9E-07 4.1E-12 68.4 5.9 42 2-43 111-152 (201)
65 TIGR01251 ribP_PPkin ribose-ph 98.5 1.6E-07 3.5E-12 71.8 5.8 40 1-40 208-247 (308)
66 COG0503 Apt Adenine/guanine ph 98.5 2E-07 4.4E-12 66.6 5.8 44 2-45 115-158 (179)
67 PRK07847 amidophosphoribosyltr 98.5 1.4E-07 3E-12 77.0 5.1 68 1-79 365-433 (510)
68 TIGR01743 purR_Bsub pur operon 98.5 5.4E-07 1.2E-11 68.4 7.0 44 2-45 193-236 (268)
69 PRK09213 pur operon repressor; 98.5 6.3E-07 1.4E-11 68.2 7.3 44 2-45 195-238 (271)
70 PRK05500 bifunctional orotidin 98.4 7.1E-07 1.5E-11 72.4 6.1 44 2-45 392-435 (477)
71 KOG1448 Ribose-phosphate pyrop 98.2 1.7E-06 3.6E-11 66.9 3.9 48 1-48 212-262 (316)
72 KOG1712 Adenine phosphoribosyl 98.1 3.4E-06 7.5E-11 60.5 4.3 52 2-53 121-175 (183)
73 COG0034 PurF Glutamine phospho 97.9 1.7E-05 3.7E-10 64.2 4.2 68 1-79 346-414 (470)
74 PLN02541 uracil phosphoribosyl 97.8 3.9E-05 8.5E-10 57.6 5.1 41 3-43 157-199 (244)
75 KOG0572 Glutamine phosphoribos 97.7 3.7E-05 8.1E-10 61.6 3.2 68 1-79 354-422 (474)
76 COG1926 Predicted phosphoribos 97.6 0.00012 2.6E-09 54.3 4.8 76 2-86 123-199 (220)
77 PF15609 PRTase_2: Phosphoribo 97.4 0.00035 7.6E-09 51.0 5.4 42 3-44 121-163 (191)
78 PF14681 UPRTase: Uracil phosp 97.2 0.00092 2E-08 48.5 5.9 42 2-43 120-163 (207)
79 COG0035 Upp Uracil phosphoribo 97.2 0.0007 1.5E-08 50.1 5.1 44 1-44 122-166 (210)
80 KOG1503 Phosphoribosylpyrophos 95.3 0.026 5.6E-07 43.5 4.0 49 2-50 246-297 (354)
81 KOG1017 Predicted uracil phosp 93.4 0.17 3.8E-06 37.9 4.7 45 2-46 188-234 (267)
82 PF15610 PRTase_3: PRTase ComF 91.8 0.43 9.4E-06 36.7 5.1 33 1-33 136-168 (274)
83 PF01488 Shikimate_DH: Shikima 77.1 7.7 0.00017 25.8 4.9 34 1-38 10-43 (135)
84 smart00450 RHOD Rhodanese Homo 69.5 13 0.00027 21.8 4.2 31 2-35 55-85 (100)
85 cd01444 GlpE_ST GlpE sulfurtra 62.2 17 0.00037 21.8 3.8 31 2-35 55-85 (96)
86 cd01529 4RHOD_Repeats Member o 62.1 21 0.00046 21.7 4.3 30 3-35 56-85 (96)
87 PF01634 HisG: ATP phosphoribo 61.4 5 0.00011 28.5 1.4 13 9-21 110-122 (163)
88 PRK13584 hisG ATP phosphoribos 60.0 5.2 0.00011 29.5 1.3 13 9-21 148-160 (204)
89 PRK01686 hisG ATP phosphoribos 58.0 5.8 0.00013 29.4 1.3 13 9-21 158-170 (215)
90 cd00158 RHOD Rhodanese Homolog 57.5 29 0.00063 20.0 4.2 31 2-35 49-79 (89)
91 TIGR01809 Shik-DH-AROM shikima 56.9 29 0.00062 26.1 4.9 33 2-38 124-156 (282)
92 TIGR00070 hisG ATP phosphoribo 53.6 7.9 0.00017 27.9 1.3 13 9-21 152-164 (182)
93 PF02875 Mur_ligase_C: Mur lig 53.3 27 0.00058 21.3 3.6 37 4-40 12-48 (91)
94 PF03192 DUF257: Pyrococcus pr 52.5 11 0.00024 27.6 2.0 21 6-26 41-61 (210)
95 PRK13583 hisG ATP phosphoribos 49.7 7.1 0.00015 29.2 0.6 11 11-21 177-187 (228)
96 COG0784 CheY FOG: CheY-like re 49.7 32 0.00069 21.2 3.6 27 1-30 3-29 (130)
97 COG0040 HisG ATP phosphoribosy 47.0 10 0.00022 29.5 1.1 13 9-21 159-171 (290)
98 PRK00258 aroE shikimate 5-dehy 46.2 62 0.0014 24.0 5.2 33 2-38 122-154 (278)
99 COG0031 CysK Cysteine synthase 44.4 28 0.0006 27.1 3.1 25 13-38 177-201 (300)
100 PF07931 CPT: Chloramphenicol 43.3 37 0.00081 24.1 3.5 21 7-27 86-107 (174)
101 COG3707 AmiR Response regulato 43.0 43 0.00094 24.6 3.8 57 2-66 4-60 (194)
102 PF12646 DUF3783: Domain of un 42.7 68 0.0015 18.6 4.2 33 5-39 2-34 (58)
103 cd01518 RHOD_YceA Member of th 42.0 66 0.0014 19.7 4.1 29 3-34 61-89 (101)
104 PF13738 Pyr_redox_3: Pyridine 41.7 83 0.0018 21.2 5.0 28 2-34 166-193 (203)
105 PRK04194 hypothetical protein; 41.1 48 0.001 26.7 4.1 38 9-48 255-292 (392)
106 TIGR00299 conserved hypothetic 40.9 49 0.0011 26.6 4.1 38 9-48 254-291 (382)
107 cd01528 RHOD_2 Member of the R 38.4 84 0.0018 19.2 4.2 30 3-35 58-87 (101)
108 PRK00676 hemA glutamyl-tRNA re 37.8 85 0.0019 24.8 5.0 32 2-37 173-204 (338)
109 PRK12749 quinate/shikimate deh 37.5 98 0.0021 23.5 5.2 33 2-38 123-155 (288)
110 cd01525 RHOD_Kc Member of the 35.0 89 0.0019 19.0 4.0 30 3-35 65-94 (105)
111 COG2604 Uncharacterized protei 34.9 17 0.00037 30.9 0.7 47 12-63 229-275 (594)
112 cd01398 RPI_A RPI_A: Ribose 5- 34.7 50 0.0011 23.9 3.1 26 13-38 21-49 (213)
113 PRK14027 quinate/shikimate deh 34.5 1E+02 0.0022 23.3 4.9 33 2-38 126-158 (283)
114 cd01527 RHOD_YgaP Member of th 34.1 1E+02 0.0022 18.6 4.1 29 3-34 54-82 (99)
115 cd01519 RHOD_HSP67B2 Member of 33.9 90 0.0019 18.9 3.8 30 3-35 66-95 (106)
116 PF01969 DUF111: Protein of un 33.5 60 0.0013 26.0 3.6 38 9-48 257-294 (382)
117 PLN02245 ATP phosphoribosyl tr 33.4 19 0.00041 29.2 0.7 12 10-21 241-252 (403)
118 cd07025 Peptidase_S66 LD-Carbo 33.3 60 0.0013 24.4 3.4 37 4-40 193-230 (282)
119 COG2072 TrkA Predicted flavopr 32.9 76 0.0017 25.4 4.1 32 1-37 173-204 (443)
120 cd07062 Peptidase_S66_mccF_lik 32.5 78 0.0017 24.1 4.0 36 4-39 219-255 (308)
121 PF00455 DeoRC: DeoR C termina 32.2 63 0.0014 22.2 3.1 24 13-38 25-48 (161)
122 PRK13940 glutamyl-tRNA reducta 31.9 1.1E+02 0.0024 24.5 4.9 33 2-38 180-212 (414)
123 cd01532 4RHOD_Repeat_1 Member 31.9 85 0.0019 19.0 3.4 30 3-35 50-81 (92)
124 cd01447 Polysulfide_ST Polysul 30.8 58 0.0013 19.6 2.5 30 3-35 61-90 (103)
125 COG0540 PyrB Aspartate carbamo 30.8 1.1E+02 0.0023 24.3 4.4 36 1-38 156-191 (316)
126 cd01523 RHOD_Lact_B Member of 30.7 1E+02 0.0023 18.6 3.7 27 3-32 61-87 (100)
127 KOG1481 Cysteine synthase [Ami 30.4 58 0.0013 26.0 2.9 31 14-45 222-252 (391)
128 PRK11253 ldcA L,D-carboxypepti 30.0 80 0.0017 24.2 3.7 37 4-40 195-232 (305)
129 PRK12548 shikimate 5-dehydroge 29.8 1.6E+02 0.0034 22.1 5.2 33 2-38 125-157 (289)
130 cd06437 CESA_CaSu_A2 Cellulose 29.7 84 0.0018 21.7 3.5 22 5-28 34-55 (232)
131 PF00910 RNA_helicase: RNA hel 29.3 51 0.0011 20.8 2.2 41 2-43 48-93 (107)
132 PF01973 MAF_flag10: Protein o 29.1 36 0.00077 23.3 1.5 52 4-65 25-76 (170)
133 PF02016 Peptidase_S66: LD-car 28.9 1.1E+02 0.0023 23.2 4.1 38 4-41 193-231 (284)
134 PRK13033 formyl peptide recept 28.6 1.7E+02 0.0038 19.8 4.6 55 15-87 69-123 (133)
135 PRK00702 ribose-5-phosphate is 28.5 62 0.0013 23.8 2.7 18 12-29 25-42 (220)
136 PRK12549 shikimate 5-dehydroge 28.3 1.5E+02 0.0033 22.2 4.9 32 2-37 126-157 (284)
137 TIGR00678 holB DNA polymerase 28.1 1.4E+02 0.003 20.4 4.3 27 2-28 95-122 (188)
138 PF03681 UPF0150: Uncharacteri 27.9 19 0.00042 19.7 -0.0 19 10-28 22-40 (48)
139 cd01449 TST_Repeat_2 Thiosulfa 27.5 1.5E+02 0.0033 18.3 4.1 29 3-34 78-106 (118)
140 PF11382 DUF3186: Protein of u 26.3 1.9E+02 0.0042 22.2 5.2 41 2-42 82-122 (308)
141 COG4825 Uncharacterized membra 26.0 1.1E+02 0.0024 24.4 3.8 34 1-34 178-211 (395)
142 COG0169 AroE Shikimate 5-dehyd 25.7 1.2E+02 0.0025 23.3 3.9 31 3-37 126-156 (283)
143 cd01080 NAD_bind_m-THF_DH_Cycl 25.4 2E+02 0.0044 20.1 4.8 27 1-31 42-69 (168)
144 PF02698 DUF218: DUF218 domain 25.2 1.5E+02 0.0032 19.5 3.9 35 4-38 71-105 (155)
145 smart00849 Lactamase_B Metallo 25.1 1.4E+02 0.003 19.3 3.8 32 12-43 19-51 (183)
146 TIGR00021 rpiA ribose 5-phosph 24.8 93 0.002 22.9 3.1 18 12-29 20-37 (218)
147 cd01522 RHOD_1 Member of the R 24.7 1.5E+02 0.0032 18.9 3.8 21 14-34 72-92 (117)
148 COG0588 GpmA Phosphoglycerate 24.4 96 0.0021 23.4 3.1 26 2-31 173-198 (230)
149 PRK12769 putative oxidoreducta 23.5 2E+02 0.0042 24.1 5.1 32 2-37 467-498 (654)
150 PF00581 Rhodanese: Rhodanese- 23.5 1.8E+02 0.0038 17.4 4.1 34 3-36 67-102 (113)
151 PF14502 HTH_41: Helix-turn-he 23.4 1.1E+02 0.0024 17.6 2.5 19 15-33 19-37 (48)
152 PF00185 OTCace: Aspartate/orn 23.3 1.3E+02 0.0029 20.6 3.5 34 2-38 1-34 (158)
153 PF04189 Gcd10p: Gcd10p family 23.2 1.9E+02 0.0042 22.4 4.7 39 2-46 201-239 (299)
154 PRK12550 shikimate 5-dehydroge 23.0 1.5E+02 0.0033 22.3 4.0 31 4-38 123-153 (272)
155 PF09992 DUF2233: Predicted pe 22.9 1E+02 0.0022 20.8 2.9 26 15-43 114-139 (170)
156 cd01524 RHOD_Pyr_redox Member 22.8 1.8E+02 0.0039 17.3 4.1 26 3-31 51-76 (90)
157 cd06259 YdcF-like YdcF-like. Y 22.2 1.1E+02 0.0024 20.0 2.9 35 4-38 68-102 (150)
158 PRK05319 rplD 50S ribosomal pr 21.4 1.3E+02 0.0029 21.8 3.3 28 4-31 120-147 (205)
159 PLN02592 ent-copalyl diphospha 21.0 36 0.00078 29.9 0.3 22 7-28 575-596 (800)
160 cd01477 vWA_F09G8-8_type VWA F 20.8 1.8E+02 0.0038 20.6 3.8 28 14-41 108-139 (193)
161 cd01453 vWA_transcription_fact 20.8 2.4E+02 0.0052 19.6 4.4 33 6-39 111-144 (183)
162 PF08667 BetR: BetR domain; I 20.7 2E+02 0.0044 20.1 4.0 43 22-71 85-127 (147)
163 cd01644 RT_pepA17 RT_pepA17: R 20.4 52 0.0011 23.8 1.0 22 5-26 137-158 (213)
164 COG1837 Predicted RNA-binding 20.4 1.4E+02 0.0029 18.7 2.8 20 14-33 47-66 (76)
165 COG1619 LdcA Uncharacterized p 20.4 1.5E+02 0.0033 23.1 3.6 38 4-41 207-245 (313)
166 PF10662 PduV-EutP: Ethanolami 20.4 1.2E+02 0.0026 21.0 2.7 31 11-41 100-130 (143)
167 PRK11749 dihydropyrimidine deh 20.3 2.5E+02 0.0054 22.2 4.9 33 2-38 272-304 (457)
168 KOG3182 Predicted cation trans 20.3 52 0.0011 24.5 1.0 15 66-80 9-30 (212)
169 TIGR02803 ExbD_1 TonB system t 20.3 1.8E+02 0.004 18.8 3.5 25 15-39 97-121 (122)
170 PRK08762 molybdopterin biosynt 20.2 1.9E+02 0.0041 22.5 4.2 33 2-38 134-166 (376)
171 PRK12702 mannosyl-3-phosphogly 20.1 1.5E+02 0.0033 23.2 3.5 68 12-85 38-109 (302)
No 1
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=100.00 E-value=8.6e-35 Score=212.90 Aligned_cols=90 Identities=42% Similarity=0.640 Sum_probs=86.9
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCCEEEEeecCChhHhh
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPDYFVVGYGMDFAELY 80 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~~~vvgygld~~~~~ 80 (95)
++||+|||||||+|||.||+++++.|++++|+++++|+|++|+++++++++|| |+||++||+|||||||||+++|
T Consensus 116 i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~avL~dK~~~r~~~i~~D-----yvG~~vpd~fvvGyGlDy~~~~ 190 (211)
T PTZ00271 116 VENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPSGRKVEVLVD-----YPVITIPHAFVIGYGMDYAESY 190 (211)
T ss_pred CCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEEEEEcccCCcCCCCCC-----EEEEEcCCceEEEccccccccc
Confidence 47999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hCCCceeecCCcccC
Q 034410 81 RNLPYVGVLKPECYK 95 (95)
Q Consensus 81 R~l~~v~~l~~~~~~ 95 (95)
||||+|+++++++++
T Consensus 191 Rnlp~I~~l~~~~~~ 205 (211)
T PTZ00271 191 RELRDICVLKKEYYE 205 (211)
T ss_pred CCCCeeEEechhhcC
Confidence 999999999988764
No 2
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2e-34 Score=205.89 Aligned_cols=88 Identities=58% Similarity=0.929 Sum_probs=86.0
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCCEEEEeecCChhHhh
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPDYFVVGYGMDFAELY 80 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~~~vvgygld~~~~~ 80 (95)
++||+|||||||+|||.||+.+.+.|+.+||+++++|+|++||.++++++++| |+||++||+|||||||||.|.|
T Consensus 91 i~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK~~~r~~~i~~D-----yvGf~vPd~FVvGyGlDy~~~y 165 (178)
T COG0634 91 IKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKPERRKVDIEAD-----YVGFEVPDEFVVGYGLDYAERY 165 (178)
T ss_pred CCCCeEEEEecccccChhHHHHHHHHHhCCCCeEEEEEEeeCcccccCCCCcc-----eEeeecCCceEEEcccchhhhh
Confidence 68999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hCCCceeecCCcc
Q 034410 81 RNLPYVGVLKPEC 93 (95)
Q Consensus 81 R~l~~v~~l~~~~ 93 (95)
||||+|++++|+.
T Consensus 166 RnLPyIg~~~~~~ 178 (178)
T COG0634 166 RNLPYIGVLKPEV 178 (178)
T ss_pred cCCCeeEEecCCC
Confidence 9999999999873
No 3
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=100.00 E-value=1.1e-33 Score=203.27 Aligned_cols=90 Identities=69% Similarity=1.084 Sum_probs=86.4
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceecee-----ecCccCeEEEEEeCCEEEEeecCC
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVE-----LVGEGKFYRGFECPDYFVVGYGMD 75 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~-----pD~~~~~y~g~~i~~~~vvgygld 75 (95)
++|++|||||||+|||+||.++++.|++.||+++++|+|++|+.+++.+++ || |+||++||+||||||||
T Consensus 95 v~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~avL~dK~~~r~~~~~~~~~~~d-----~~G~~ipd~fvvGyGlD 169 (189)
T PLN02238 95 VKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCALLDKRARRKVKYELVGDGKE-----YVGFECPDEFVVGYGLD 169 (189)
T ss_pred CCCCEEEEEecccchHHHHHHHHHHHHhCCCCEEEEEEEEECCccccCCccCCCCCce-----EEEEecCCceEEECCcc
Confidence 368999999999999999999999999999999999999999999999999 99 99999999999999999
Q ss_pred hhHhhhCCCceeecCCcccC
Q 034410 76 FAELYRNLPYVGVLKPECYK 95 (95)
Q Consensus 76 ~~~~~R~l~~v~~l~~~~~~ 95 (95)
|+|+|||||+|++++++.++
T Consensus 170 ~~~~~R~lp~i~~~~~~~~~ 189 (189)
T PLN02238 170 FAEKYRNLPYVGVLKPEVYQ 189 (189)
T ss_pred cCccCCCCCeeEEecccccC
Confidence 99999999999999988653
No 4
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.2e-33 Score=201.93 Aligned_cols=84 Identities=46% Similarity=0.842 Sum_probs=81.4
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCCEEEEeecCChhHhh
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPDYFVVGYGMDFAELY 80 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~~~vvgygld~~~~~ 80 (95)
++||+|||||||+|||.||+++.+.|++.||+++++|+|++|+.+++.+++|| |+||++||+|||||||||+|+|
T Consensus 90 v~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~~~v~~avL~~K~~~r~~~i~~D-----yvG~~vpd~fvvGyGlD~~~~~ 164 (178)
T PRK15423 90 IRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVE-----FIGFSIPDEFVVGYGIDYAQRY 164 (178)
T ss_pred CCCCEEEEEeeecCchHHHHHHHHHHHhCCCCEEEEEEEEECCCCCcCCCCCc-----EEEEEcCCCeEEEcCcccCccc
Confidence 47899999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hCCCceeec
Q 034410 81 RNLPYVGVL 89 (95)
Q Consensus 81 R~l~~v~~l 89 (95)
||||+|+++
T Consensus 165 Rnlp~i~~~ 173 (178)
T PRK15423 165 RHLPYIGKV 173 (178)
T ss_pred CCCCccEEE
Confidence 999999975
No 5
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.1e-33 Score=208.16 Aligned_cols=89 Identities=34% Similarity=0.495 Sum_probs=85.9
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCCEEEEeecCChhHhh
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPDYFVVGYGMDFAELY 80 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~~~vvgygld~~~~~ 80 (95)
++||+|||||||+|||.||.++.+.|++.||+++++|+|++|+.+++.+++|| |+||++||+|||||||||+|+|
T Consensus 148 l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~L~~K~~~r~~~i~pD-----YvGfevpd~FVVGYGlDy~~~~ 222 (241)
T PTZ00149 148 LKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIATLFEKRTPLSNGFKGD-----FVGFSIPDHFVVGYCLDYNEHF 222 (241)
T ss_pred cCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEEEEecCccccCCCCCc-----eEEEEcCCceEEECCccccccc
Confidence 47899999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hCCCceeecCCccc
Q 034410 81 RNLPYVGVLKPECY 94 (95)
Q Consensus 81 R~l~~v~~l~~~~~ 94 (95)
||||+||+++++..
T Consensus 223 RnLp~I~~l~~~~~ 236 (241)
T PTZ00149 223 RDLDHVAVLNDEGI 236 (241)
T ss_pred CCCCeeEEEcHHHh
Confidence 99999999999754
No 6
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.98 E-value=3.6e-32 Score=191.72 Aligned_cols=84 Identities=55% Similarity=0.888 Sum_probs=81.4
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCCEEEEeecCChhHhh
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPDYFVVGYGMDFAELY 80 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~~~vvgygld~~~~~ 80 (95)
++||+|||||||+|||.||.++++.|++.|++++++|+|++|+..++.++.|| |+|+++||+|||||||||+++|
T Consensus 82 ~~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD-----y~g~~v~d~~vvGyGld~~~~~ 156 (166)
T TIGR01203 82 IKGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKIVTLLDKPSRRKVDVKVD-----FVGFEIPDKFVVGYGLDYAERY 156 (166)
T ss_pred CCCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEEEEEEecCccCcCCCCCC-----EEEEEcCCceEEEcCcccCccc
Confidence 36899999999999999999999999999999999999999999998999999 9999999999999999999999
Q ss_pred hCCCceeec
Q 034410 81 RNLPYVGVL 89 (95)
Q Consensus 81 R~l~~v~~l 89 (95)
||||+|+++
T Consensus 157 R~lp~i~~~ 165 (166)
T TIGR01203 157 RNLPYIGVL 165 (166)
T ss_pred CCCCeeEEe
Confidence 999999986
No 7
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.97 E-value=3.5e-32 Score=195.27 Aligned_cols=89 Identities=44% Similarity=0.662 Sum_probs=86.5
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCCEEEEeecCChhHhh
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPDYFVVGYGMDFAELY 80 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~~~vvgygld~~~~~ 80 (95)
+.||+|||||||+|||+||..+.+.+++.+|+.+++|+|+.|+.++.+.++|| |+||+|||+|||||||||||+|
T Consensus 123 ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vasLL~Krt~R~v~yk~d-----y~gFEiPdkFVVGYglDyne~f 197 (216)
T KOG3367|consen 123 LTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLLVKRTRRSVGYKPD-----YVGFEIPDKFVVGYGLDYNEYF 197 (216)
T ss_pred hcCCcEEEEEeeccccchHHHHHHHHHhcCccceeeeeecccccccccCCCcc-----cccccCCchheeecccchhhhh
Confidence 46899999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hCCCceeecCCccc
Q 034410 81 RNLPYVGVLKPECY 94 (95)
Q Consensus 81 R~l~~v~~l~~~~~ 94 (95)
|+|.|||+++|+.+
T Consensus 198 RdL~hIcVi~p~g~ 211 (216)
T KOG3367|consen 198 RDLNHICVISPEGK 211 (216)
T ss_pred cccCceEEecHhHh
Confidence 99999999999864
No 8
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.97 E-value=3.3e-31 Score=188.84 Aligned_cols=85 Identities=35% Similarity=0.593 Sum_probs=81.6
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCce-eceeecCccCeEEEEEeCCEEEEeecCChhHh
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRK-IQVELVGEGKFYRGFECPDYFVVGYGMDFAEL 79 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~-~~~~pD~~~~~y~g~~i~~~~vvgygld~~~~ 79 (95)
++||+|||||||+|||+||.++++.|+++||++|.+++|+.|+..+. .++.|| |+|+++|++|+|||||||++.
T Consensus 95 v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~avL~~k~~~~~~~~~~pD-----~~g~~~~~~~~~g~g~d~~~~ 169 (181)
T PRK09162 95 LKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLVDKTHDRKAKPLKAD-----FVGLEVPDRYVFGYGMDYKGY 169 (181)
T ss_pred CCCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEEEEEEcCcccccCCCCCc-----EEEEEcCCceEEEcCcccCCC
Confidence 46899999999999999999999999999999999999999998877 789999 999999999999999999999
Q ss_pred hhCCCceeecC
Q 034410 80 YRNLPYVGVLK 90 (95)
Q Consensus 80 ~R~l~~v~~l~ 90 (95)
|||||||++++
T Consensus 170 ~r~l~~~~~~~ 180 (181)
T PRK09162 170 WRNLPGIYAVK 180 (181)
T ss_pred CCCCCceEEeC
Confidence 99999999986
No 9
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.68 E-value=1.3e-16 Score=112.92 Aligned_cols=60 Identities=23% Similarity=0.416 Sum_probs=55.5
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCC-CCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCC
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKG-ASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPD 66 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g-~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~ 66 (95)
++|++|||||||+|||+||.++++.|++.| |+++++|+|++|+ .++.++.|| |+||++|+
T Consensus 93 v~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL~~K~-~~~~~~~~D-----yvg~~ip~ 153 (176)
T PRK05205 93 IEGKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLVDRG-HRELPIRAD-----YVGKNIPT 153 (176)
T ss_pred CCCCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEEEECC-CCcCCCCCC-----EEEEECCC
Confidence 468999999999999999999999999998 8999999999995 566899999 99999984
No 10
>PLN02440 amidophosphoribosyltransferase
Probab=99.57 E-value=1.8e-15 Score=121.60 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=62.4
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceec-eeecCccCeEEEEEeCC-EEEEeecCChhH
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQ-VELVGEGKFYRGFECPD-YFVVGYGMDFAE 78 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~-~~pD~~~~~y~g~~i~~-~~vvgygld~~~ 78 (95)
++||+||||||+++||+||+++++.|+++||++|.++++. | + ..|+ |+|+++|+ ++++|||+|++|
T Consensus 338 v~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~--p-----~~~~p~-----~~G~d~p~~~~li~~~~~~~e 405 (479)
T PLN02440 338 LEGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIAS--P-----PIIASC-----YYGVDTPSREELISNRMSVEE 405 (479)
T ss_pred ccCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEEC--C-----cccccc-----eeeccCCCHHHHhhcCCCHHH
Confidence 4689999999999999999999999999999999999986 1 2 4799 99999998 899999999999
Q ss_pred hhh
Q 034410 79 LYR 81 (95)
Q Consensus 79 ~~R 81 (95)
.-+
T Consensus 406 i~~ 408 (479)
T PLN02440 406 IRK 408 (479)
T ss_pred HHH
Confidence 643
No 11
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=99.46 E-value=1.5e-13 Score=96.23 Aligned_cols=62 Identities=23% Similarity=0.238 Sum_probs=51.8
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCC-EEEEeecCChh
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPD-YFVVGYGMDFA 77 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~-~~vvgygld~~ 77 (95)
+|++|||||||+|||.||.++.+.+. ++++|+|+.|+..+ ..|| |++..+++ .|++ |.++.+
T Consensus 83 ~gk~VLIVDDIiDTG~Tl~~v~~~l~-----~v~~a~l~~K~~~~---~~~D-----~~~~~~~~~~Wi~-fpwe~~ 145 (156)
T PRK09177 83 DGEGFLVVDDLVDTGGTARAVREMYP-----KAHFATVYAKPAGR---PLVD-----TYVTDVPQDTWIE-FPWDMG 145 (156)
T ss_pred CcCEEEEEeeeeCCHHHHHHHHHHHh-----hCCEEEEEECcCCC---CCCC-----eEEeEcCCCCeEE-eCCCCC
Confidence 68999999999999999999999996 37999999999776 4589 99999874 5665 555543
No 12
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.26 E-value=3.6e-12 Score=92.60 Aligned_cols=70 Identities=26% Similarity=0.298 Sum_probs=58.0
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCCE-EEEeecCChhHhh
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPDY-FVVGYGMDFAELY 80 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~~-~vvgygld~~~~~ 80 (95)
.||||||||||.|||.||..+.+.|++..|.+++++++..++. || |++....++ |++ |-+...|..
T Consensus 86 ~GkkVLIVDDI~DTG~Tl~~a~~~l~~~~p~e~rta~l~~~~~-------~~-----~~~~~~~~~~w~i-~pw~~~ed~ 152 (192)
T COG2236 86 SGKKVLIVDDIVDTGETLELALEELKKLAPAEVRTAVLQYKKS-------PD-----YYGEEVTAWAWII-FPWNRKEDL 152 (192)
T ss_pred CCCeEEEEecccCchHhHHHHHHHHHhhCchhhhhhhhhcccC-------Cc-----ccccceeeeEEEE-eecccchhh
Confidence 6999999999999999999999999998889999999999986 88 899887654 433 555665555
Q ss_pred hCCC
Q 034410 81 RNLP 84 (95)
Q Consensus 81 R~l~ 84 (95)
++++
T Consensus 153 ~~~~ 156 (192)
T COG2236 153 ADLI 156 (192)
T ss_pred hhhh
Confidence 5554
No 13
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.24 E-value=1.9e-11 Score=80.07 Aligned_cols=39 Identities=36% Similarity=0.428 Sum_probs=37.5
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEE
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLL 40 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~ 40 (95)
.||+||||||+++||.|+.++.+.|+++|++++.+++++
T Consensus 87 ~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 87 KGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp TTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred cceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 689999999999999999999999999999999999985
No 14
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.23 E-value=2.3e-11 Score=86.99 Aligned_cols=72 Identities=21% Similarity=0.294 Sum_probs=61.8
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCC-CCEEEEEEEEEcCCCceeceeecCccCeEEEEEeC---CEEEEeecCCh
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKG-ASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECP---DYFVVGYGMDF 76 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g-~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~---~~~vvgygld~ 76 (95)
+.||+|++|||++-||+|++++++.|...| |..|+.|+|+++. .++.|+.|| |+|-.+| ++-|.-+.-+.
T Consensus 94 i~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLVDRG-HRELPIRaD-----yVGKniPTs~~E~V~V~l~e~ 167 (179)
T COG2065 94 ITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLVDRG-HRELPIRAD-----YVGKNIPTSRSEEVKVRLEEV 167 (179)
T ss_pred ccCCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEEEEcCC-CccCCcccc-----cccCcCCCCCcceEEEEeecc
Confidence 579999999999999999999999999986 8999999999985 788999999 9999998 56665564444
Q ss_pred hH
Q 034410 77 AE 78 (95)
Q Consensus 77 ~~ 78 (95)
++
T Consensus 168 D~ 169 (179)
T COG2065 168 DG 169 (179)
T ss_pred CC
Confidence 33
No 15
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.16 E-value=7.6e-11 Score=84.13 Aligned_cols=40 Identities=38% Similarity=0.428 Sum_probs=37.7
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEE
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLL 40 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~ 40 (95)
++|++|||||||+|||+||.++.+.|+++|+++|.+++|.
T Consensus 150 ~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~~la 189 (190)
T TIGR00201 150 FQGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVWTLA 189 (190)
T ss_pred CCCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 3689999999999999999999999999999999999986
No 16
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.11 E-value=2.6e-10 Score=82.43 Aligned_cols=46 Identities=30% Similarity=0.505 Sum_probs=43.0
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCce
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRK 47 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~ 47 (95)
.|++||||||+++||+|+.++.+.|+++|++.+.++++++|++...
T Consensus 139 ~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v~v~vlvdk~g~~~ 184 (200)
T PRK02277 139 EGKRCVIVDDVITSGTTMKETIEYLKEHGGKPVAVVVLIDKSGIDE 184 (200)
T ss_pred CcCEEEEEeeccCchHHHHHHHHHHHHcCCEEEEEEEEEECcchhh
Confidence 6899999999999999999999999999999999999999986544
No 17
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.10 E-value=6.8e-11 Score=95.42 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=59.2
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCCEE-EEeecCChhHh
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPDYF-VVGYGMDFAEL 79 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~~~-vvgygld~~~~ 79 (95)
++||+||||||+++||.|+.++++.|+++|+++|.+++. .+ ....|+ |+|+++|+.. +++++++.+|.
T Consensus 358 ~~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~~-~p-----~~~~~~-----~~gid~~~~~~l~~~~~~~~ei 426 (479)
T PRK09123 358 IEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIA-SP-----PITHPC-----FYGIDTPERSKLLAATHSLEEM 426 (479)
T ss_pred cCCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEEc-CC-----CCccce-----eecCCCCCHHHHHHcCCCHHHH
Confidence 368999999999999999999999999999999999766 11 235799 9999999876 78889888875
Q ss_pred h
Q 034410 80 Y 80 (95)
Q Consensus 80 ~ 80 (95)
-
T Consensus 427 ~ 427 (479)
T PRK09123 427 A 427 (479)
T ss_pred H
Confidence 3
No 18
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=99.09 E-value=2.3e-10 Score=80.75 Aligned_cols=43 Identities=28% Similarity=0.312 Sum_probs=41.1
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPA 44 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~ 44 (95)
.|++|||||||++||+|+.++.+.|+++|++.+.++++++++.
T Consensus 113 ~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~v~vl~~~~~ 155 (175)
T PRK02304 113 PGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPD 155 (175)
T ss_pred CCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEEEEEEEEccc
Confidence 6899999999999999999999999999999999999999874
No 19
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.08 E-value=2.9e-10 Score=83.41 Aligned_cols=42 Identities=31% Similarity=0.432 Sum_probs=39.0
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEc
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDK 42 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k 42 (95)
++|++|||||||+|||.||.++.+.|++.|+++|.+++|...
T Consensus 185 ~~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~~la~~ 226 (227)
T PRK11595 185 VQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVWCLCRT 226 (227)
T ss_pred CCCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEEEEEec
Confidence 368999999999999999999999999999999999998753
No 20
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.08 E-value=3.5e-10 Score=81.29 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=42.0
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCc
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARR 46 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~ 46 (95)
+|++|||||||++||+||.++++.|+++|++.+.+++++++....
T Consensus 104 ~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~~~vlid~~~~~ 148 (187)
T TIGR01367 104 PGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVGLACIIDRSQGG 148 (187)
T ss_pred CCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEEEEEEEECcCCC
Confidence 589999999999999999999999999999999999999988443
No 21
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.07 E-value=3.4e-10 Score=79.58 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=40.5
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPA 44 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~ 44 (95)
.|++|||||||++||+|+.++.+.|+++|++.+.+++++.+..
T Consensus 108 ~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l~~~~~ 150 (169)
T TIGR01090 108 PGQRVLIVDDLLATGGTAEATDELIRKLGGEVVEAAFLIELKD 150 (169)
T ss_pred CcCEEEEEeccccchHHHHHHHHHHHHcCCEEEEEEEEEEccc
Confidence 6899999999999999999999999999999999999998764
No 22
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.06 E-value=4.1e-10 Score=80.06 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=40.7
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPAR 45 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~ 45 (95)
+|++||||||+++||+|+.++++.|+++|++.+.++++++....
T Consensus 119 ~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~v~~~~~~ 162 (178)
T PRK07322 119 KGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAAIFAEGDA 162 (178)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEcCCC
Confidence 58999999999999999999999999999999999999886543
No 23
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.00 E-value=5.5e-10 Score=89.46 Aligned_cols=69 Identities=20% Similarity=0.249 Sum_probs=56.2
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCC-EEEEeecCChhHh
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPD-YFVVGYGMDFAEL 79 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~-~~vvgygld~~~~ 79 (95)
++||+||||||+++||+|+.++++.|+++|+++|.+++ ...|- ..|. |+|.++|+ +-++...++.+|.
T Consensus 332 v~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~-~spp~-----~~pc-----~~gid~~~~~~lia~~~~~eei 400 (442)
T PRK08341 332 INGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRI-ASPPI-----RYPC-----YMGIDIPTRHELIAAWGSVEDI 400 (442)
T ss_pred cCCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEE-cCCCc-----cCCC-----ceeeecCCHHHHhhcCCCHHHH
Confidence 36899999999999999999999999999999988886 44432 2588 99999994 4456667777765
Q ss_pred h
Q 034410 80 Y 80 (95)
Q Consensus 80 ~ 80 (95)
-
T Consensus 401 ~ 401 (442)
T PRK08341 401 R 401 (442)
T ss_pred H
Confidence 3
No 24
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=98.99 E-value=6.3e-10 Score=90.08 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=54.6
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCC-EEEEeecCChhHh
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPD-YFVVGYGMDFAEL 79 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~-~~vvgygld~~~~ 79 (95)
++||+||||||+++||+|+.++++.|+++|+++|.++++...- ..|. |+|.++|+ +-++...++.+|.
T Consensus 356 v~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ap~i------~~pc-----~ygid~~~~~eLia~~~~~e~i 424 (501)
T PRK09246 356 FKGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAAPPV------RFPN-----VYGIDMPTANELIAHGRTVEEI 424 (501)
T ss_pred ccCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEcccc------ccCc-----ccccCCCCHHHHhhcCCCHHHH
Confidence 4689999999999999999999999999999999999875432 3578 99999984 3445555555553
No 25
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=98.97 E-value=1.7e-09 Score=77.19 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=41.5
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPAR 45 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~ 45 (95)
+|++||||||+++||+|+.++.+.|++.|++.+.+++++++...
T Consensus 106 ~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr~~~ 149 (176)
T PRK13812 106 EGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDREEG 149 (176)
T ss_pred CcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEECCcc
Confidence 68999999999999999999999999999999999999998743
No 26
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=98.97 E-value=1.3e-09 Score=78.46 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=40.5
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKP 43 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~ 43 (95)
.|++||||||+++||+|+.++++.|++.|++.+.+++++++.
T Consensus 112 ~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vlv~~~ 153 (202)
T PRK00455 112 FGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRQ 153 (202)
T ss_pred CCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEEEECc
Confidence 589999999999999999999999999999999999999995
No 27
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.95 E-value=6.6e-10 Score=85.10 Aligned_cols=62 Identities=24% Similarity=0.400 Sum_probs=50.1
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE---EEEcCCCceece-eecCccCeEEEEEeC
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT---LLDKPARRKIQV-ELVGEGKFYRGFECP 65 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~---l~~k~~~~~~~~-~pD~~~~~y~g~~i~ 65 (95)
++||+|+|||||++||+||.++++.|++.|+++|.+++ ++.+++..++.- ..| .+++..++|
T Consensus 199 v~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a~~~l~~~~~~---~i~~t~tip 264 (304)
T PRK03092 199 VEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSGPAAERLKNCGAR---EVVVTDTLP 264 (304)
T ss_pred CCCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccCChHHHHHHHHCCCC---EEEEeeeec
Confidence 47899999999999999999999999999999999999 677665444321 133 557777776
No 28
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.94 E-value=7.9e-10 Score=85.40 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=50.0
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE---EEEcCCCceece-eecCccCeEEEEEeCC
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT---LLDKPARRKIQV-ELVGEGKFYRGFECPD 66 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~---l~~k~~~~~~~~-~pD~~~~~y~g~~i~~ 66 (95)
++||+|+|||||+|||+||.++++.|++.|+++|.+++ +|.+.+..+..- ..| ++++..++|.
T Consensus 216 V~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgif~~~a~~~l~~s~i~---~iv~TdTi~~ 282 (323)
T PRK02458 216 VAGKKAILIDDILNTGKTFAEAAKIVEREGATEIYAVASHGLFAGGAAEVLENAPIK---EILVTDSVAT 282 (323)
T ss_pred cCCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEEEEEChhcCchHHHHHhhCCCC---EEEEECCcCC
Confidence 47999999999999999999999999999999999998 566655443321 233 6688888763
No 29
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=98.92 E-value=2.1e-09 Score=79.26 Aligned_cols=40 Identities=35% Similarity=0.329 Sum_probs=37.5
Q ss_pred CeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcC
Q 034410 4 FLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKP 43 (95)
Q Consensus 4 k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~ 43 (95)
++|+|||||+|||.|+.++.+.|++.|+++|.+++++.-+
T Consensus 185 ~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~lar~~ 224 (225)
T COG1040 185 KNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTLARAP 224 (225)
T ss_pred CeEEEEecccccHHHHHHHHHHHHHcCCceEEEEEEEecC
Confidence 7899999999999999999999999999999999988643
No 30
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=98.91 E-value=2.5e-09 Score=77.40 Aligned_cols=51 Identities=29% Similarity=0.411 Sum_probs=46.5
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceee
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVEL 52 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~p 52 (95)
.||+++||||+++||+|++++++.|++.|++.+.+++|.+|.+...++-.|
T Consensus 140 ~gK~cvIVDDvittG~Ti~E~Ie~lke~g~kpv~v~VL~dK~G~dei~gvP 190 (203)
T COG0856 140 EGKRCVIVDDVITTGSTIKETIEQLKEEGGKPVLVVVLADKKGVDEIEGVP 190 (203)
T ss_pred cCceEEEEecccccChhHHHHHHHHHHcCCCcEEEEEEEccCCcccccCcc
Confidence 689999999999999999999999999999999999999999877765444
No 31
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=98.90 E-value=2.7e-09 Score=77.60 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=42.4
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCc
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARR 46 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~ 46 (95)
++|++|||+||+++||+|+..+++.|+++|+++|++|+++.++...
T Consensus 122 i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~~~ll~~~~gl 167 (209)
T PRK00129 122 IDERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLCLVAAPEGI 167 (209)
T ss_pred CCCCEEEEECCcccchHHHHHHHHHHHHcCCCEEEEEEEecCHHHH
Confidence 4689999999999999999999999999999999999999887543
No 32
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=98.90 E-value=4e-09 Score=74.63 Aligned_cols=44 Identities=25% Similarity=0.258 Sum_probs=41.3
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCC
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPA 44 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~ 44 (95)
.+|++||||||+++||+|+.++.+.|++.|++-+.+++++++..
T Consensus 102 ~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~~ 145 (170)
T PRK13811 102 VKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDREQ 145 (170)
T ss_pred cCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECCc
Confidence 36899999999999999999999999999999999999999874
No 33
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.90 E-value=1.3e-09 Score=84.21 Aligned_cols=63 Identities=29% Similarity=0.343 Sum_probs=48.8
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE---EEEcCCCceeceeecCccCeEEEEEeC
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT---LLDKPARRKIQVELVGEGKFYRGFECP 65 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~---l~~k~~~~~~~~~pD~~~~~y~g~~i~ 65 (95)
.+||+|+|||||+|||+||.++++.|+++|+++|.+++ +|...+..+..-. ...++++..++|
T Consensus 215 v~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~THgvfs~~a~~~l~~s--~i~~iv~Tdtip 280 (319)
T PRK04923 215 VQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVLSGPAVDNINNS--QLDELVVTDTIP 280 (319)
T ss_pred CCCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEEEEECcccCchHHHHHhhC--CCCEEEEeCCcc
Confidence 47999999999999999999999999999999999988 5555443333111 122668887776
No 34
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=98.90 E-value=2.6e-09 Score=77.63 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=42.2
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCc
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARR 46 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~ 46 (95)
+++++||||||+++||+|+..+++.|+++|+++|++|+++.++...
T Consensus 120 i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v~~ll~~~~gl 165 (207)
T TIGR01091 120 IDERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLSIVAAPEGI 165 (207)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHHHHcCCCEEEEEEEecCHHHH
Confidence 4689999999999999999999999999999999999999887543
No 35
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.89 E-value=3e-09 Score=81.39 Aligned_cols=64 Identities=25% Similarity=0.241 Sum_probs=49.0
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE---EEEcCCCceeceeecCccCeEEEEEeCC
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT---LLDKPARRKIQVELVGEGKFYRGFECPD 66 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~---l~~k~~~~~~~~~pD~~~~~y~g~~i~~ 66 (95)
++||+|+|||||+|||+||.++++.|+++|+++|.+++ +|.+.+..+..-. ...++++..++|.
T Consensus 209 v~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgvfs~~a~~~l~~~--~i~~iv~Tdti~~ 275 (301)
T PRK07199 209 WAGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCVVVHALFAGDAYSALAAA--GIARVVSTDTVPH 275 (301)
T ss_pred cCCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEEeeeCChHHHHHHHhC--CCCEEEEeCCccC
Confidence 37999999999999999999999999999999999998 4455443333111 1236688888763
No 36
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=98.89 E-value=4.1e-09 Score=74.47 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=40.9
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPA 44 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~ 44 (95)
.|++||||||+++||+|+.++++.|+++|++.+.+++++++..
T Consensus 107 ~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vlvdr~~ 149 (173)
T TIGR00336 107 EGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQE 149 (173)
T ss_pred CCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEEEecCc
Confidence 5899999999999999999999999999999999999999864
No 37
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=98.89 E-value=3.2e-09 Score=76.83 Aligned_cols=48 Identities=31% Similarity=0.534 Sum_probs=40.3
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE---EEEcCCCcee
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT---LLDKPARRKI 48 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~---l~~k~~~~~~ 48 (95)
++||.++||||++|||.|+..+++.|+++||++|.+++ +|..++.+++
T Consensus 81 V~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A~~~l 131 (184)
T PF14572_consen 81 VKGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDAPERL 131 (184)
T ss_dssp -TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTHHHHH
T ss_pred ccCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchHHHHH
Confidence 47999999999999999999999999999999999988 6777766554
No 38
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.88 E-value=3.4e-09 Score=80.35 Aligned_cols=64 Identities=22% Similarity=0.166 Sum_probs=48.7
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEE---cCCCcee-ceeecCccCeEEEEEeCCE
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLD---KPARRKI-QVELVGEGKFYRGFECPDY 67 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~---k~~~~~~-~~~pD~~~~~y~g~~i~~~ 67 (95)
++||+|||||||+|||+|+.++++.|+++|++++.+++++- ..+..++ +...| .+++..++|..
T Consensus 202 v~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~~H~i~~~~a~~~l~~~~i~---~i~~tnti~~~ 269 (285)
T PRK00934 202 VKGKDVLIVDDIISTGGTMATAIKILKEQGAKKVYVACVHPVLVGDAILKLYNAGVD---EIIVTDTLESE 269 (285)
T ss_pred cCCCEEEEEcCccccHHHHHHHHHHHHHCCCCEEEEEEEeeccCcHHHHHHHhCCCC---EEEEcCCCCCC
Confidence 36999999999999999999999999999999999999643 3332222 11233 56777777743
No 39
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=98.88 E-value=1.3e-09 Score=84.31 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=49.2
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE---EEEcCCCceeceeecCccCeEEEEEeCC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT---LLDKPARRKIQVELVGEGKFYRGFECPD 66 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~---l~~k~~~~~~~~~pD~~~~~y~g~~i~~ 66 (95)
.||+++|||||+|||+||..+++.|+++||++|.+|+ +|..++.+..+-. ...+++++.++|.
T Consensus 213 ~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vfs~~a~~~l~~~--~i~~vivTnTi~~ 278 (314)
T COG0462 213 EGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVFSGAALERLEAS--AIDEVIVTDTIPL 278 (314)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEEEEchhhChHHHHHHhcC--CCCEEEEeCCccc
Confidence 6999999999999999999999999999999999998 5554443333222 2236677777775
No 40
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.86 E-value=4.5e-09 Score=81.02 Aligned_cols=63 Identities=24% Similarity=0.257 Sum_probs=49.1
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE---EEEcCCCceeceeecCccCeEEEEEeC
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT---LLDKPARRKIQVELVGEGKFYRGFECP 65 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~---l~~k~~~~~~~~~pD~~~~~y~g~~i~ 65 (95)
.+||+|||||||+|||+||.++++.|+++|+++|.+++ +|.+.+..+..- ....++++..++|
T Consensus 215 v~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHglf~~~a~~~l~~--~~i~~iv~Tdti~ 280 (320)
T PRK02269 215 VKGKKCILIDDMIDTAGTICHAADALAEAGATEVYASCTHPVLSGPALDNIQK--SAIEKLVVLDTIY 280 (320)
T ss_pred cCCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEEEEECcccCchHHHHHHh--CCCCEEEEeCCCC
Confidence 36899999999999999999999999999999999998 556655444321 1122567777775
No 41
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=98.86 E-value=1.8e-09 Score=83.74 Aligned_cols=65 Identities=23% Similarity=0.308 Sum_probs=49.5
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE---EEEcCCCceecee---ec-CccCeEEEEEeC
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT---LLDKPARRKIQVE---LV-GEGKFYRGFECP 65 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~---l~~k~~~~~~~~~---pD-~~~~~y~g~~i~ 65 (95)
.+||+|+|||||+|||+||.++.+.|++.|++++.+++ +|...+..+..-. |+ ...+++++.++|
T Consensus 228 v~gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga~~V~~~~THglfs~~a~~~l~~~~~~~~~~i~~iv~TdTip 299 (326)
T PLN02297 228 PAGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFPNESWERFTHDNGGPEAGFAYFWITDSCP 299 (326)
T ss_pred cCCCeEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEECcccChhHHHHHHhcccccccCcCEEEEcCCcc
Confidence 37899999999999999999999999999999999998 5666554443221 11 122567777776
No 42
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.83 E-value=5.3e-09 Score=80.23 Aligned_cols=39 Identities=31% Similarity=0.395 Sum_probs=36.9
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEE
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTL 39 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l 39 (95)
++|++|+|||||++||+|+.++.+.|++.|++++.+++.
T Consensus 206 ~~g~~vliVDDii~TG~T~~~a~~~l~~~Ga~~v~~~~t 244 (309)
T PRK01259 206 VEGRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAYAT 244 (309)
T ss_pred CCCCEEEEEecccCcHHHHHHHHHHHHccCCCEEEEEEE
Confidence 368999999999999999999999999999999999994
No 43
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.81 E-value=3.5e-09 Score=84.97 Aligned_cols=63 Identities=22% Similarity=0.202 Sum_probs=50.8
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE---EEEcCCCceeceeecCccCeEEEEEeC
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT---LLDKPARRKIQVELVGEGKFYRGFECP 65 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~---l~~k~~~~~~~~~pD~~~~~y~g~~i~ 65 (95)
.+||+++|||||+|||+||.++++.|++.|+++|.+++ +|...+..++.-. ...++++..++|
T Consensus 333 V~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s--~i~~IvvTdTIp 398 (439)
T PTZ00145 333 VYDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAFATHGLFSGPAIERIEAS--PLEEVVVTDTVK 398 (439)
T ss_pred CCCCEEEEEcceeCcHHHHHHHHHHHHHcCCCEEEEEEEcccCChhHHHHHhcC--CCCEEEEeCCCc
Confidence 36899999999999999999999999999999999999 7777765544221 122667777776
No 44
>PRK06031 phosphoribosyltransferase; Provisional
Probab=98.81 E-value=1.3e-08 Score=75.77 Aligned_cols=44 Identities=11% Similarity=0.257 Sum_probs=40.3
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPAR 45 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~ 45 (95)
+|++||||||+++||+|+.++++.|+++|++.+.+++++.....
T Consensus 153 ~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v~v~~g~~ 196 (233)
T PRK06031 153 EGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAAMLQSER 196 (233)
T ss_pred CCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEEEEEcccc
Confidence 68999999999999999999999999999999999998886543
No 45
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=98.80 E-value=1.3e-08 Score=74.46 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=39.8
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKP 43 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~ 43 (95)
.|++|+||||+++||+|+.++.+.|++.|++.+.+++++++.
T Consensus 117 ~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~ 158 (206)
T PRK13809 117 PGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQ 158 (206)
T ss_pred CCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECc
Confidence 589999999999999999999999999999999999999965
No 46
>PLN02293 adenine phosphoribosyltransferase
Probab=98.79 E-value=1.5e-08 Score=73.02 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=40.3
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPA 44 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~ 44 (95)
+|++||||||+++||+|+.++.+.|++.|++.+.+++++..+.
T Consensus 124 ~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~~~~~~~~~~ 166 (187)
T PLN02293 124 PGERALVIDDLIATGGTLCAAINLLERAGAEVVECACVIELPE 166 (187)
T ss_pred CCCEEEEEeccccchHHHHHHHHHHHHCCCEEEEEEEEEEcCC
Confidence 6899999999999999999999999999999999999988664
No 47
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.77 E-value=6.9e-09 Score=80.51 Aligned_cols=66 Identities=24% Similarity=0.282 Sum_probs=50.8
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE---EEEcCCCceecee--ecCccCeEEEEEeCC
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT---LLDKPARRKIQVE--LVGEGKFYRGFECPD 66 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~---l~~k~~~~~~~~~--pD~~~~~y~g~~i~~ 66 (95)
.+||+|+|||||++||+|+.++.+.|++.|++++.+++ +|.+.+..+..-. -....++++..++|.
T Consensus 216 v~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~atHglf~~~a~~~l~~~~~~~~i~~iv~Tntip~ 286 (332)
T PRK00553 216 VKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLFNKNAIQLFDEAFKKKLIDKLFVSNSIPQ 286 (332)
T ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEEEEeeecCchHHHHHHhccccCCCCEEEEeCCccC
Confidence 36899999999999999999999999999999999998 6777665443210 001226688888763
No 48
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=98.76 E-value=1.8e-08 Score=72.40 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=40.5
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPA 44 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~ 44 (95)
+|++||||||+++||+|+.++.+.++++|+..+.+++++++..
T Consensus 113 ~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~ 155 (187)
T PRK12560 113 KGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQ 155 (187)
T ss_pred CcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecc
Confidence 6899999999999999999999999999999999999999864
No 49
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=98.76 E-value=1.2e-08 Score=82.40 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=51.2
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCC-EEEEeecCChhH
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPD-YFVVGYGMDFAE 78 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~-~~vvgygld~~~ 78 (95)
++||+|+||||+++||.|+.++++.|+++|+++|.+.+ ..-|- ..|- |+|.++|. +-++...+..+|
T Consensus 346 i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i-~sPpi-----~~pc-----~yGid~~~~~elia~~~~~ee 413 (471)
T PRK06781 346 VEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRI-ASPPL-----KYPC-----FYGIDIQTRKELIAANHTVEE 413 (471)
T ss_pred cCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEE-CCCCc-----cCCc-----ccccCCCCHHHHHhcCCCHHH
Confidence 46899999999999999999999999999999877663 11211 3577 99999884 344555555554
No 50
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=98.75 E-value=1.3e-08 Score=82.40 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=53.3
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCC-EEEEeecCChhHh
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPD-YFVVGYGMDFAEL 79 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~-~~vvgygld~~~~ 79 (95)
++||+||||||+++||+|++++++.|+++|+++|.+.+ ..-|- .-|. |+|.++|+ +-++.+.++.+|.
T Consensus 346 v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~-~sPpi-----~~pc-----~yGid~~~~~eLia~~~~~eei 414 (475)
T PRK07631 346 VEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRI-SSPPI-----THPC-----FYGIDTSTKEELIASNHSVEEI 414 (475)
T ss_pred cCCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEE-eCCCc-----cCCc-----ccCCCCCCHHHHhhcCCCHHHH
Confidence 46899999999999999999999999999999977663 22221 3578 99999984 4556667766664
No 51
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=98.73 E-value=1.4e-08 Score=81.37 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=36.1
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEE
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTL 39 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l 39 (95)
++||+||||||+++||.||.++++.|+++||++|.+++.
T Consensus 338 v~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~ 376 (445)
T PRK08525 338 LEGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIA 376 (445)
T ss_pred cCCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 369999999999999999999999999999999888863
No 52
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=98.73 E-value=2.4e-08 Score=72.17 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=40.2
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKP 43 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~ 43 (95)
.|+|||||||+++||+|+.++.+.++++|++-+.+++++++.
T Consensus 116 ~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~ 157 (191)
T TIGR01744 116 DQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKS 157 (191)
T ss_pred CcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEec
Confidence 589999999999999999999999999999999999999986
No 53
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=98.73 E-value=1.8e-08 Score=80.62 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=49.6
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCC--EEEEeecCChhH
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPD--YFVVGYGMDFAE 78 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~--~~vvgygld~~~ 78 (95)
++||+||||||+++||+|++++.+.|+++|+++|.+++ ..-|- ..|- |+|.++|+ +.+ -..+..+|
T Consensus 336 ~~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~-~spp~-----~~pc-----~yg~d~~~~~el~-~~~~~~~~ 403 (442)
T TIGR01134 336 FRGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRI-ASPPI-----RYPC-----YYGIDMPTREELI-ANGRTVEE 403 (442)
T ss_pred CCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEE-ccCCc-----cCCc-----ccccCCCCHHHHh-hcCCCHHH
Confidence 36899999999999999999999999999999888543 22221 3577 89988884 333 34455444
No 54
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=98.73 E-value=9.1e-09 Score=78.78 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=49.4
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE---EEEcCCCceece-eecCccCeEEEEEeCC
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT---LLDKPARRKIQV-ELVGEGKFYRGFECPD 66 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~---l~~k~~~~~~~~-~pD~~~~~y~g~~i~~ 66 (95)
.+||+|+|||||++||+|+.++++.|++.|++++.+++ ++...+..++.- .+| .+++..++|.
T Consensus 200 v~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~tH~v~~~~a~~~l~~~~~~---~iv~t~ti~~ 266 (302)
T PLN02369 200 VKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVFSPPAIERLSSGLFQ---EVIVTNTIPV 266 (302)
T ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEEEeeeeCHHHHHHHHhCCCC---EEEEeCCCCC
Confidence 36899999999999999999999999999999999998 565655444322 244 4566666664
No 55
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.72 E-value=8.8e-09 Score=79.91 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=49.1
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE---EEEcCCCceec-eeecCccCeEEEEEeCC
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT---LLDKPARRKIQ-VELVGEGKFYRGFECPD 66 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~---l~~k~~~~~~~-~~pD~~~~~y~g~~i~~ 66 (95)
++|++|+|||||++||.|+.++++.|++.|+++|.+++ ++...+..++. -..| ++++..++|.
T Consensus 228 v~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~~~tH~v~s~~a~~~l~~~~id---~iv~tnti~~ 294 (330)
T PRK02812 228 VKGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACATHAVFSPPAIERLSSGLFE---EVIVTNTIPV 294 (330)
T ss_pred CCCCEEEEEccccCcHHHHHHHHHHHhccCCCeEEEEEEcccCChHHHHHHhhCCCC---EEEEeCCCCC
Confidence 36899999999999999999999999999999999998 55665544432 1233 5577766663
No 56
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.71 E-value=2.5e-08 Score=78.88 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=37.9
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEE
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLD 41 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~ 41 (95)
++||+|+|||||++||+||..+++.|+++|+++|.+++.+-
T Consensus 262 V~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~ 302 (382)
T PRK06827 262 VEGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFG 302 (382)
T ss_pred cCCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEee
Confidence 36899999999999999999999999999999999998654
No 57
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=98.71 E-value=3.6e-08 Score=71.09 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=41.0
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPAR 45 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~ 45 (95)
.|++|+||||+++||+|+.++.+.+++.|+.-+.+++++++...
T Consensus 121 ~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~g 164 (187)
T PRK13810 121 PEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREEG 164 (187)
T ss_pred CcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECCcC
Confidence 58999999999999999999999999999999999999998643
No 58
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=98.68 E-value=2.6e-08 Score=80.49 Aligned_cols=67 Identities=19% Similarity=0.190 Sum_probs=51.4
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCC-EEEEeecCChhHh
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPD-YFVVGYGMDFAEL 79 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~-~~vvgygld~~~~ 79 (95)
+||+||||||+++||+|++++++.|+++|+++|.+.+ ..-| + .-|. |+|.++|+ +-++..+...+|.
T Consensus 355 ~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri-~sPp----i-~~pc-----~yGid~~~~~eLia~~~~~eei 422 (474)
T PRK06388 355 SGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRI-GSPH----I-IAPC-----YFGVDMKTKDQFIARGKTDEEI 422 (474)
T ss_pred cCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEe-CCCC----c-cCCc-----ccCCCCCCHHHHHhcCCCHHHH
Confidence 6899999999999999999999999999999876653 1111 1 3578 99999984 3445566666554
No 59
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=98.68 E-value=4e-08 Score=73.07 Aligned_cols=44 Identities=25% Similarity=0.231 Sum_probs=41.0
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPAR 45 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~ 45 (95)
+|++||||||+++||+|+.++.+.++++|++.+.+++++.+...
T Consensus 175 ~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~~ 218 (238)
T PRK08558 175 KGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGEV 218 (238)
T ss_pred CcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCch
Confidence 68999999999999999999999999999999999999987543
No 60
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=98.68 E-value=4e-08 Score=70.91 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=39.9
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKP 43 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~ 43 (95)
.|+|||||||+++||+|+.++.+.++++|++-+.+++++++.
T Consensus 116 ~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~~ 157 (189)
T PRK09219 116 EGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKS 157 (189)
T ss_pred CCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEcc
Confidence 589999999999999999999999999999999999999876
No 61
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=98.68 E-value=2.7e-08 Score=80.93 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=51.3
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCC-EEEEeecCChhHh
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPD-YFVVGYGMDFAEL 79 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~-~~vvgygld~~~~ 79 (95)
++||+||||||+++||.|++++++.|+++|+++|.+.. ..-| + ..|. |+|.++|+ +-++...++.+|.
T Consensus 375 ~~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i-~sPp----~-~~pc-----~ygid~~~~~eLia~~~~~eei 443 (500)
T PRK07349 375 LAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRI-SSPP----V-THPC-----FYGIDTDTQDQLIAATKSVEEI 443 (500)
T ss_pred cCCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEe-CCCc----c-cccc-----cccCCCCCHHHHhhcCCCHHHH
Confidence 36999999999999999999999999999999875542 1111 1 3577 99999884 3445566666554
No 62
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=98.67 E-value=3.5e-08 Score=79.51 Aligned_cols=68 Identities=24% Similarity=0.283 Sum_probs=51.4
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCC-EEEEeecCChhHh
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPD-YFVVGYGMDFAEL 79 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~-~~vvgygld~~~~ 79 (95)
++||+||||||+++||+|+.++++.|+++||++|.+++-.- +- ..|. |+|.+.|. +-++...+..+|.
T Consensus 351 v~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p-~~-----~~p~-----~~gid~~~~~elia~~~~~~ei 419 (469)
T PRK05793 351 VEGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSP-PV-----KYPC-----YFGIDTPYRKELIGANMSVEEI 419 (469)
T ss_pred cCCCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECC-Cc-----Ccch-----hhhccCCChhhEEEcCCCHHHH
Confidence 36899999999999999999999999999999988876322 11 2356 78888872 3445466665553
No 63
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=98.56 E-value=8.7e-08 Score=77.70 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=36.5
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEE
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTL 39 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l 39 (95)
++||+||||||+++||.|+.++++.|+++|+++|.+++.
T Consensus 348 ~~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~ 386 (484)
T PRK07272 348 VKGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIA 386 (484)
T ss_pred cCCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEe
Confidence 478999999999999999999999999999999888875
No 64
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.54 E-value=1.9e-07 Score=68.44 Aligned_cols=42 Identities=26% Similarity=0.401 Sum_probs=40.2
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKP 43 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~ 43 (95)
.|+||+||||+++||.++.++++.|+++|+.-..+++++++.
T Consensus 111 ~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ivDR~ 152 (201)
T COG0461 111 KGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDRQ 152 (201)
T ss_pred CCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEEEecc
Confidence 589999999999999999999999999999999999999985
No 65
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=98.54 E-value=1.6e-07 Score=71.81 Aligned_cols=40 Identities=30% Similarity=0.298 Sum_probs=37.2
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEE
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLL 40 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~ 40 (95)
++|++|+||||+++||+|+.++.+.|++.|++++.+++.+
T Consensus 208 v~g~~vliVDDii~tG~Tl~~a~~~l~~~ga~~v~~~~th 247 (308)
T TIGR01251 208 VEGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAAATH 247 (308)
T ss_pred cCCCEEEEEccccCCHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 3689999999999999999999999999999999988854
No 66
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=98.54 E-value=2e-07 Score=66.61 Aligned_cols=44 Identities=25% Similarity=0.223 Sum_probs=40.4
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPAR 45 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~ 45 (95)
.|++||||||++.||+|+.++.+.+++.|+.-+-++++..+...
T Consensus 115 ~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~~~~ 158 (179)
T COG0503 115 PGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIELGEL 158 (179)
T ss_pred CCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEEEEEEEcCcc
Confidence 48999999999999999999999999999998888888887654
No 67
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=98.52 E-value=1.4e-07 Score=77.01 Aligned_cols=68 Identities=21% Similarity=0.287 Sum_probs=50.6
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCC-EEEEeecCChhHh
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPD-YFVVGYGMDFAEL 79 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~-~~vvgygld~~~~ 79 (95)
++||+||||||+++||.|+.++++.|+++|+++|.+.. ..-| + .-|- |+|.++|+ +-++...++.+|.
T Consensus 365 ~~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri-~sPp----i-~~pc-----~yGid~~~~~eLia~~~~~eei 433 (510)
T PRK07847 365 IRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRI-SSPP----V-KWPC-----FYGIDFASRAELIANGLTVEEI 433 (510)
T ss_pred cCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEE-CCCC----c-CCCC-----cCcCCCCCHHHHHhcCCCHHHH
Confidence 47899999999999999999999999999999866552 1111 1 2466 88988884 3445556665553
No 68
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=98.47 E-value=5.4e-07 Score=68.44 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=40.9
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPAR 45 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~ 45 (95)
.|+|||||||++.||+|+.++.+.++++|+.-+-+++++.+...
T Consensus 193 ~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlve~~~~ 236 (268)
T TIGR01743 193 TGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIGVLIDNEGV 236 (268)
T ss_pred CcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEEEEEECCCC
Confidence 58999999999999999999999999999999999999998644
No 69
>PRK09213 pur operon repressor; Provisional
Probab=98.47 E-value=6.3e-07 Score=68.15 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=40.8
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPAR 45 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~ 45 (95)
.|++||||||++.||+|+.++++.++++|+.-+-+++++.+...
T Consensus 195 ~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlVd~~~~ 238 (271)
T PRK09213 195 EGSRVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGVLVETKEP 238 (271)
T ss_pred CcCEEEEEeeecccCHhHHHHHHHHHHCCCEEEEEEEEEECCCC
Confidence 58999999999999999999999999999999999999998654
No 70
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=98.38 E-value=7.1e-07 Score=72.42 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=41.0
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPAR 45 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~ 45 (95)
.|++|||||||++||+|+.++++.|++.|++.+.+++++++...
T Consensus 392 ~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~~g 435 (477)
T PRK05500 392 PGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHEQG 435 (477)
T ss_pred CcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECCcc
Confidence 58999999999999999999999999999999999999998753
No 71
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=98.19 E-value=1.7e-06 Score=66.90 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=41.9
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE---EEEcCCCcee
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT---LLDKPARRKI 48 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~---l~~k~~~~~~ 48 (95)
.+||.++||||++||++|+..+.+.|.++|+++|+.++ +|.+++.++.
T Consensus 212 v~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVfs~~a~er~ 262 (316)
T KOG1448|consen 212 VKGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVFSGPAIERL 262 (316)
T ss_pred cCCcEEEEecccccccchHHHHHHHHHhcCCceEEEEEcceeccccHHHHh
Confidence 37899999999999999999999999999999999888 6666655544
No 72
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=98.13 E-value=3.4e-06 Score=60.51 Aligned_cols=52 Identities=25% Similarity=0.340 Sum_probs=42.2
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcC---CCceeceeec
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKP---ARRKIQVELV 53 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~---~~~~~~~~pD 53 (95)
.|++|+||||++.||+|+.++.+.+.+.|++-+.++++.--+ ++.+.+-+|-
T Consensus 121 ~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL~~LkGr~kL~~~pl 175 (183)
T KOG1712|consen 121 PGQRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIELPELKGREKLKGKPL 175 (183)
T ss_pred CCCeEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEEccccCCccccCCCcc
Confidence 379999999999999999999999999999999988876533 3334444454
No 73
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=97.86 E-value=1.7e-05 Score=64.23 Aligned_cols=68 Identities=22% Similarity=0.271 Sum_probs=52.4
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCC-EEEEeecCChhHh
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPD-YFVVGYGMDFAEL 79 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~-~~vvgygld~~~~ 79 (95)
++||+|++|||=+=.|.|++.+++.|+++||++|.+..- ..+ + ..|. |+|.++|. +-++..+.+.+|.
T Consensus 346 v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvria-sP~----i-~~Pc-----~YGID~pt~~eLIA~~~~~eeI 414 (470)
T COG0034 346 VKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIA-SPP----I-RYPC-----FYGIDMPTREELIAANRTVEEI 414 (470)
T ss_pred hCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEec-CCC----c-cCCC-----ccccCCCCHHHHhhCCCCHHHH
Confidence 479999999999999999999999999999999887642 111 1 3577 99999984 3445566565553
No 74
>PLN02541 uracil phosphoribosyltransferase
Probab=97.81 E-value=3.9e-05 Score=57.61 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=36.9
Q ss_pred CCeEEEEeeeechhHHHHHHHHHHHhCCCC--EEEEEEEEEcC
Q 034410 3 TFLCSQVEDIVDTGTTLSSLIANLVSKGAS--SVSVCTLLDKP 43 (95)
Q Consensus 3 ~k~vliVDDIidTG~Tl~~~~~~l~~~g~~--~i~~~~l~~k~ 43 (95)
+++|||+||++.||+|+..+++.|+++|++ .|.+++++.-+
T Consensus 157 ~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ias~ 199 (244)
T PLN02541 157 GSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAAP 199 (244)
T ss_pred CCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEECH
Confidence 578999999999999999999999999986 88888877755
No 75
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=97.66 E-value=3.7e-05 Score=61.57 Aligned_cols=68 Identities=24% Similarity=0.316 Sum_probs=54.4
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCC-EEEEeecCChhHh
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPD-YFVVGYGMDFAEL 79 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~-~~vvgygld~~~~ 79 (95)
++||||+||||=+=.|.|+..+++.|+++||++|.+... ..| + .-|- |+|..+|+ +-++-+.+..+|.
T Consensus 354 ~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riA-sPp----i-~~pc-----~yGIdipt~keLIA~~~t~dei 422 (474)
T KOG0572|consen 354 FEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIA-SPP----I-KYPC-----YYGIDIPTSKELIANKLTVDEI 422 (474)
T ss_pred cCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEEec-CCc----c-cccc-----eeecCCCCHHHHHhcCCCHHHH
Confidence 479999999999999999999999999999999887632 221 1 1356 89999994 5567788877775
No 76
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=97.59 E-value=0.00012 Score=54.30 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=54.5
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEE-cCCCceeceeecCccCeEEEEEeCCEEEEeecCChhHhh
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLD-KPARRKIQVELVGEGKFYRGFECPDYFVVGYGMDFAELY 80 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~-k~~~~~~~~~pD~~~~~y~g~~i~~~~vvgygld~~~~~ 80 (95)
+|+.|+||||=+.||.||..+++.++++++++|.+++=.. ..+-..+.-..| . .++..+|..|. --.+.|
T Consensus 123 ~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~~l~s~~D---~-vvc~~~P~~F~-----AVg~~Y 193 (220)
T COG1926 123 KGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAAELESEAD---E-VVCLYMPAPFE-----AVGEFY 193 (220)
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHHHHHHhhcC---e-EEEEcCCccHH-----HHHHHH
Confidence 6899999999999999999999999999999999998433 333333333444 2 45667887664 223456
Q ss_pred hCCCce
Q 034410 81 RNLPYV 86 (95)
Q Consensus 81 R~l~~v 86 (95)
|+++.+
T Consensus 194 ~dF~q~ 199 (220)
T COG1926 194 RDFRQV 199 (220)
T ss_pred HHHhhc
Confidence 666554
No 77
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=97.43 E-value=0.00035 Score=51.01 Aligned_cols=42 Identities=31% Similarity=0.310 Sum_probs=36.3
Q ss_pred CCeEEEEeeeechhHHHHHHHHHHHhCCC-CEEEEEEEEEcCC
Q 034410 3 TFLCSQVEDIVDTGTTLSSLIANLVSKGA-SSVSVCTLLDKPA 44 (95)
Q Consensus 3 ~k~vliVDDIidTG~Tl~~~~~~l~~~g~-~~i~~~~l~~k~~ 44 (95)
.+.+++|||-++||+|+..+++.|++.-| +++.+++|.+-.+
T Consensus 121 ~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvasL~d~~~ 163 (191)
T PF15609_consen 121 ARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVASLLDWRS 163 (191)
T ss_pred CCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEEEeeCCC
Confidence 46899999999999999999999998765 6788888988653
No 78
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=97.25 E-value=0.00092 Score=48.54 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=37.2
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCC--CEEEEEEEEEcC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGA--SSVSVCTLLDKP 43 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~--~~i~~~~l~~k~ 43 (95)
++++|+|+|-++.||+|+..+++.|+++|+ ++|.+++++.-+
T Consensus 120 ~~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ias~ 163 (207)
T PF14681_consen 120 ENRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSVIASP 163 (207)
T ss_dssp TTSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEEEEEH
T ss_pred cCCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEEEecH
Confidence 578999999999999999999999999876 789988877643
No 79
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.0007 Score=50.08 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=40.4
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhC-CCCEEEEEEEEEcCC
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSK-GASSVSVCTLLDKPA 44 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~-g~~~i~~~~l~~k~~ 44 (95)
+.++.|+|+|=++.||+|+..+.+.|+++ |+++|++.+++.-|.
T Consensus 122 ~~~~~viv~DPMLATG~s~i~ai~~L~~~G~~~~I~~v~~vAape 166 (210)
T COG0035 122 IDERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVVSLVAAPE 166 (210)
T ss_pred ccCCeEEEECchhhccHhHHHHHHHHHHhCCCceEEEEEEEecHH
Confidence 46899999999999999999999999999 899999999888664
No 80
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=95.30 E-value=0.026 Score=43.46 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=40.9
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE---EEEcCCCceece
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT---LLDKPARRKIQV 50 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~---l~~k~~~~~~~~ 50 (95)
.|+-.++||||+|.-.+..++++.|+++|+-++.+.+ ++...+++..+-
T Consensus 246 ggriaimvddiiddvqsfvaaae~lkergaykiyv~athgllssdapr~lee 297 (354)
T KOG1503|consen 246 GGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLSSDAPRLLEE 297 (354)
T ss_pred CceEEEEehhhHHhHHHHHHHHHHHHhcCceEEEEEeecccccccchhhhhc
Confidence 5788899999999999999999999999998887776 566666665543
No 81
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=93.42 E-value=0.17 Score=37.93 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=38.7
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCC--CEEEEEEEEEcCCCc
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGA--SSVSVCTLLDKPARR 46 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~--~~i~~~~l~~k~~~~ 46 (95)
..++||+.=-|+.||.|+-.+++.|+++|. ..|....||..|...
T Consensus 188 ~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~IiL~sLF~tP~ga 234 (267)
T KOG1017|consen 188 TSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNIILVSLFITPTGA 234 (267)
T ss_pred cceeEEEEeeeecCCccHHHHHHHHHHcCCCcccEEEEEeeecchhh
Confidence 458999999999999999999999999985 567778888877543
No 82
>PF15610 PRTase_3: PRTase ComF-like
Probab=91.80 E-value=0.43 Score=36.71 Aligned_cols=33 Identities=18% Similarity=0.096 Sum_probs=30.9
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCE
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASS 33 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~ 33 (95)
++||.+|++|||--||++=..+.+.+++.|++.
T Consensus 136 l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~ 168 (274)
T PF15610_consen 136 LSGKHLIFLDDIKITGSHEDKVRKILKEYGLEN 168 (274)
T ss_pred hCCcEEEEeccEEecCcHHHHHHHHHHHcCccc
Confidence 479999999999999999999999999999987
No 83
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=77.09 E-value=7.7 Score=25.84 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=28.4
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT 38 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~ 38 (95)
+++++++|+ -+|++-+.++..|.+.|+++|.++.
T Consensus 10 l~~~~vlvi----GaGg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 10 LKGKRVLVI----GAGGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp GTTSEEEEE----SSSHHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCCCEEEEE----CCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 367888865 6899999999999999999876653
No 84
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=69.52 E-value=13 Score=21.85 Aligned_cols=31 Identities=13% Similarity=-0.063 Sum_probs=24.1
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEE
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVS 35 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~ 35 (95)
+++.|++.+ .+|.....+...|++.|.+.++
T Consensus 55 ~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~v~ 85 (100)
T smart00450 55 KDKPVVVYC---RSGNRSAKAAWLLRELGFKNVY 85 (100)
T ss_pred CCCeEEEEe---CCCcHHHHHHHHHHHcCCCceE
Confidence 457788887 6788888888889988887644
No 85
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=62.17 E-value=17 Score=21.81 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=24.8
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEE
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVS 35 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~ 35 (95)
+++.++++.. +|.+...+...|++.|...+.
T Consensus 55 ~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v~ 85 (96)
T cd01444 55 RDRPVVVYCY---HGNSSAQLAQALREAGFTDVR 85 (96)
T ss_pred CCCCEEEEeC---CCChHHHHHHHHHHcCCceEE
Confidence 4577888877 888888889999998887654
No 86
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=62.07 E-value=21 Score=21.73 Aligned_cols=30 Identities=13% Similarity=0.035 Sum_probs=22.4
Q ss_pred CCeEEEEeeeechhHHHHHHHHHHHhCCCCEEE
Q 034410 3 TFLCSQVEDIVDTGTTLSSLIANLVSKGASSVS 35 (95)
Q Consensus 3 ~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~ 35 (95)
+++|+++++ +|.....+...|++.|...++
T Consensus 56 ~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~ 85 (96)
T cd01529 56 ATRYVLTCD---GSLLARFAAQELLALGGKPVA 85 (96)
T ss_pred CCCEEEEeC---ChHHHHHHHHHHHHcCCCCEE
Confidence 567888874 677777778888888877654
No 87
>PF01634 HisG: ATP phosphoribosyltransferase; InterPro: IPR013820 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. ATP phosphoribosyltransferase is found in two distinct forms: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity []. This entry represents the catalytic region of this enzyme. The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined [, ]. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplasmic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1VE4_A 2VD3_B 1NH7_A 1NH8_A 1Z7N_G 1Z7M_E 1O64_A 1O63_A 1USY_F 1Q1K_A ....
Probab=61.43 E-value=5 Score=28.47 Aligned_cols=13 Identities=62% Similarity=0.897 Sum_probs=10.6
Q ss_pred EeeeechhHHHHH
Q 034410 9 VEDIVDTGTTLSS 21 (95)
Q Consensus 9 VDDIidTG~Tl~~ 21 (95)
|=|+++||+||++
T Consensus 110 IvDiv~TG~TLr~ 122 (163)
T PF01634_consen 110 IVDIVETGTTLRA 122 (163)
T ss_dssp EEEEESSSHHHHH
T ss_pred EEEeccCcHHHHH
Confidence 3489999999875
No 88
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=59.99 E-value=5.2 Score=29.52 Aligned_cols=13 Identities=62% Similarity=0.859 Sum_probs=10.7
Q ss_pred EeeeechhHHHHH
Q 034410 9 VEDIVDTGTTLSS 21 (95)
Q Consensus 9 VDDIidTG~Tl~~ 21 (95)
|=||++||+||++
T Consensus 148 IvDiv~TG~TLr~ 160 (204)
T PRK13584 148 IVDIVQTGTTLKA 160 (204)
T ss_pred EEEEECccHHHHH
Confidence 3489999999875
No 89
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=58.01 E-value=5.8 Score=29.36 Aligned_cols=13 Identities=54% Similarity=0.846 Sum_probs=10.7
Q ss_pred EeeeechhHHHHH
Q 034410 9 VEDIVDTGTTLSS 21 (95)
Q Consensus 9 VDDIidTG~Tl~~ 21 (95)
|=||++||+||++
T Consensus 158 IvDivsTG~TLr~ 170 (215)
T PRK01686 158 IVDIVETGNTLRA 170 (215)
T ss_pred EEEeecChHHHHH
Confidence 3389999999875
No 90
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=57.51 E-value=29 Score=20.04 Aligned_cols=31 Identities=13% Similarity=-0.017 Sum_probs=23.7
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEE
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVS 35 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~ 35 (95)
.++.|+++++- |.....+...|++.|...+.
T Consensus 49 ~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v~ 79 (89)
T cd00158 49 KDKPIVVYCRS---GNRSARAAKLLRKAGGTNVY 79 (89)
T ss_pred CCCeEEEEeCC---CchHHHHHHHHHHhCcccEE
Confidence 35778888765 77888889999999876554
No 91
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=56.87 E-value=29 Score=26.10 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=27.3
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT 38 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~ 38 (95)
++++++| +-+|++-++++..|.+.|++++.++.
T Consensus 124 ~~k~vlv----lGaGGaarai~~aL~~~G~~~i~I~n 156 (282)
T TIGR01809 124 AGFRGLV----IGAGGTSRAAVYALASLGVTDITVIN 156 (282)
T ss_pred CCceEEE----EcCcHHHHHHHHHHHHcCCCeEEEEe
Confidence 4677775 48999999999999999998877653
No 92
>TIGR00070 hisG ATP phosphoribosyltransferase. Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension.
Probab=53.61 E-value=7.9 Score=27.95 Aligned_cols=13 Identities=62% Similarity=0.818 Sum_probs=11.0
Q ss_pred EeeeechhHHHHH
Q 034410 9 VEDIVDTGTTLSS 21 (95)
Q Consensus 9 VDDIidTG~Tl~~ 21 (95)
|=||++||.||++
T Consensus 152 IvDiv~TG~TL~~ 164 (182)
T TIGR00070 152 IVDIVSTGTTLRE 164 (182)
T ss_pred EEEEeCCHHHHHH
Confidence 3489999999987
No 93
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=53.29 E-value=27 Score=21.32 Aligned_cols=37 Identities=8% Similarity=0.047 Sum_probs=24.9
Q ss_pred CeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEE
Q 034410 4 FLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLL 40 (95)
Q Consensus 4 k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~ 40 (95)
..+.+++|-..+=..++++++.|++.-+..-.++++-
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G 48 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFG 48 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEc
Confidence 4577888899999999999999988643332444443
No 94
>PF03192 DUF257: Pyrococcus protein of unknown function, DUF257; InterPro: IPR005489 This family of proteins is of unknown function.; PDB: 2EKD_C.
Probab=52.49 E-value=11 Score=27.61 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=15.8
Q ss_pred EEEEeeeechhHHHHHHHHHH
Q 034410 6 CSQVEDIVDTGTTLSSLIANL 26 (95)
Q Consensus 6 vliVDDIidTG~Tl~~~~~~l 26 (95)
-++|||++||+..+..-.+.+
T Consensus 41 ~vlI~DilDtl~i~~~~l~~~ 61 (210)
T PF03192_consen 41 PVLIDDILDTLHIYKKHLELM 61 (210)
T ss_dssp -BEEEEETTHHHHHHHHHHHT
T ss_pred CEEEEEcCCCHHHHHHHHHHc
Confidence 579999999999988544443
No 95
>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=49.70 E-value=7.1 Score=29.22 Aligned_cols=11 Identities=55% Similarity=0.776 Sum_probs=9.8
Q ss_pred eeechhHHHHH
Q 034410 11 DIVDTGTTLSS 21 (95)
Q Consensus 11 DIidTG~Tl~~ 21 (95)
||++||+||++
T Consensus 177 DivsTG~TLr~ 187 (228)
T PRK13583 177 DITSTGETLRA 187 (228)
T ss_pred hhhchhHHHHH
Confidence 89999999875
No 96
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=49.69 E-value=32 Score=21.22 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=17.9
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCC
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKG 30 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g 30 (95)
+.+.+||+||| .-.....+.+.|...|
T Consensus 3 ~~~~~vLivdD---~~~~~~~~~~~l~~~g 29 (130)
T COG0784 3 LSGLRVLVVDD---EPVNRRLLKRLLEDLG 29 (130)
T ss_pred CCCcEEEEEcC---CHHHHHHHHHHHHHcC
Confidence 35689999999 3444444555566666
No 97
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=47.02 E-value=10 Score=29.47 Aligned_cols=13 Identities=62% Similarity=0.848 Sum_probs=10.6
Q ss_pred EeeeechhHHHHH
Q 034410 9 VEDIVDTGTTLSS 21 (95)
Q Consensus 9 VDDIidTG~Tl~~ 21 (95)
|=||++||+||++
T Consensus 159 IvDivsTG~TLka 171 (290)
T COG0040 159 IVDIVSTGTTLKA 171 (290)
T ss_pred EEEeecCCHhHHH
Confidence 3489999999875
No 98
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=46.21 E-value=62 Score=24.04 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=26.5
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT 38 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~ 38 (95)
++++++|+ -+|++-++++..|.+.|+++|.++.
T Consensus 122 ~~k~vlVl----GaGg~a~ai~~aL~~~g~~~V~v~~ 154 (278)
T PRK00258 122 KGKRILIL----GAGGAARAVILPLLDLGVAEITIVN 154 (278)
T ss_pred CCCEEEEE----cCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 56788765 6899999999999999987766553
No 99
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=44.42 E-value=28 Score=27.15 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.3
Q ss_pred echhHHHHHHHHHHHhCCCCEEEEEE
Q 034410 13 VDTGTTLSSLIANLVSKGASSVSVCT 38 (95)
Q Consensus 13 idTG~Tl~~~~~~l~~~g~~~i~~~~ 38 (95)
+-||+|+.-+.+.|++..|. +++++
T Consensus 177 vGTGGTitGvar~Lk~~~p~-i~iv~ 201 (300)
T COG0031 177 VGTGGTITGVARYLKERNPN-VRIVA 201 (300)
T ss_pred CCcchhHHHHHHHHHhhCCC-cEEEE
Confidence 46999999999999999886 66665
No 100
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=43.29 E-value=37 Score=24.07 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=14.1
Q ss_pred EEEeeeechhHHHHHHH-HHHH
Q 034410 7 SQVEDIVDTGTTLSSLI-ANLV 27 (95)
Q Consensus 7 liVDDIidTG~Tl~~~~-~~l~ 27 (95)
+||||++..+.-+.... +.|.
T Consensus 86 VIvD~v~~~~~~l~d~l~~~L~ 107 (174)
T PF07931_consen 86 VIVDDVFLGPRWLQDCLRRLLA 107 (174)
T ss_dssp EEEEE--TTTHHHHHHHHHHHT
T ss_pred EEEecCccCcHHHHHHHHHHhC
Confidence 68999999998766666 5554
No 101
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=43.05 E-value=43 Score=24.63 Aligned_cols=57 Identities=9% Similarity=-0.069 Sum_probs=41.5
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPD 66 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~ 66 (95)
+.-++|++|| .-.|-..+.+.|...|...|-+++-..-+.......+|| .+-..+.+
T Consensus 4 ~~lrvlv~~d---~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~pD-----vVildie~ 60 (194)
T COG3707 4 MLLRVLVADD---EALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQPD-----VVILDIEM 60 (194)
T ss_pred cccceeeccc---cccchhhHHHHHHHcCCeEeeeecccccchhHHHhcCCC-----EEEEecCC
Confidence 4568899999 455666778888899998888887666665666678899 65555543
No 102
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.71 E-value=68 Score=18.57 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=24.7
Q ss_pred eEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEE
Q 034410 5 LCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTL 39 (95)
Q Consensus 5 ~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l 39 (95)
+++++.++ ||.-|..+++.+++.|......|++
T Consensus 2 ~~ll~~g~--~~~el~~~l~~~r~~~~~~~~kAvl 34 (58)
T PF12646_consen 2 EFLLFSGF--SGEELDKFLDALRKAGIPIPLKAVL 34 (58)
T ss_pred CEEEECCC--CHHHHHHHHHHHHHcCCCcceEEEE
Confidence 46677776 7889999999999998854444443
No 103
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=41.96 E-value=66 Score=19.66 Aligned_cols=29 Identities=17% Similarity=0.022 Sum_probs=18.8
Q ss_pred CCeEEEEeeeechhHHHHHHHHHHHhCCCCEE
Q 034410 3 TFLCSQVEDIVDTGTTLSSLIANLVSKGASSV 34 (95)
Q Consensus 3 ~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i 34 (95)
++.|++... +|..-..+...|++.|.+.+
T Consensus 61 ~~~ivvyC~---~G~rs~~a~~~L~~~G~~~v 89 (101)
T cd01518 61 GKKVLMYCT---GGIRCEKASAYLKERGFKNV 89 (101)
T ss_pred CCEEEEECC---CchhHHHHHHHHHHhCCcce
Confidence 456677653 66666666677777777654
No 104
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=41.71 E-value=83 Score=21.23 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=20.9
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEE
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSV 34 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i 34 (95)
+|++|+| +-+|.|..+++..|.+.| ++|
T Consensus 166 ~~k~V~V----VG~G~SA~d~a~~l~~~g-~~V 193 (203)
T PF13738_consen 166 KGKRVVV----VGGGNSAVDIAYALAKAG-KSV 193 (203)
T ss_dssp TTSEEEE----E--SHHHHHHHHHHTTTC-SEE
T ss_pred CCCcEEE----EcChHHHHHHHHHHHhhC-CEE
Confidence 5788885 589999999999999887 443
No 105
>PRK04194 hypothetical protein; Provisional
Probab=41.10 E-value=48 Score=26.72 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=31.6
Q ss_pred EeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCcee
Q 034410 9 VEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKI 48 (95)
Q Consensus 9 VDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~ 48 (95)
|||+ ||--+..+.+.|.++|+..+.+.-++-|.++.-.
T Consensus 255 iDD~--t~E~lg~~~e~L~~~GAlDV~~tPi~MKK~RPg~ 292 (392)
T PRK04194 255 IDDL--SPEVLGYLFERLLEAGALDVFITPITMKKNRPGH 292 (392)
T ss_pred CcCC--CHHHHHHHHHHHHHCCCceeeeccceecCCCcee
Confidence 4565 8999999999999999999998888887765533
No 106
>TIGR00299 conserved hypothetical protein TIGR00299. Members of this family are found in the Archaea and in several different bacteria lineages. The function in unknown and the genomic context is not well conserved.
Probab=40.89 E-value=49 Score=26.62 Aligned_cols=38 Identities=34% Similarity=0.500 Sum_probs=31.5
Q ss_pred EeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCcee
Q 034410 9 VEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKI 48 (95)
Q Consensus 9 VDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~ 48 (95)
|||+ ||--+..+.+.|.++|+..+.+.-++-|.++.-.
T Consensus 254 iDD~--t~E~lg~~~e~L~~~GAlDV~~tPi~MKK~RPg~ 291 (382)
T TIGR00299 254 VDDI--SGEALGYLLESLLEQGALDVFTIPIYMKKNRPGI 291 (382)
T ss_pred CcCC--CHHHHHHHHHHHHHCCCceeeeccceeeCCCcee
Confidence 4565 8999999999999999999998888887765543
No 107
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=38.39 E-value=84 Score=19.16 Aligned_cols=30 Identities=13% Similarity=0.016 Sum_probs=21.3
Q ss_pred CCeEEEEeeeechhHHHHHHHHHHHhCCCCEEE
Q 034410 3 TFLCSQVEDIVDTGTTLSSLIANLVSKGASSVS 35 (95)
Q Consensus 3 ~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~ 35 (95)
++.++++.+ +|.....+...|.+.|...++
T Consensus 58 ~~~vv~~c~---~g~rs~~~~~~l~~~G~~~v~ 87 (101)
T cd01528 58 DKDIVVLCH---HGGRSMQVAQWLLRQGFENVY 87 (101)
T ss_pred CCeEEEEeC---CCchHHHHHHHHHHcCCccEE
Confidence 567777754 677777777788888876554
No 108
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=37.81 E-value=85 Score=24.77 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=26.8
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEE
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVC 37 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~ 37 (95)
.++++||| -+|.+-+.+++.|.++|++.+.++
T Consensus 173 ~~k~vLvI----GaGem~~l~a~~L~~~g~~~i~v~ 204 (338)
T PRK00676 173 KKASLLFI----GYSEINRKVAYYLQRQGYSRITFC 204 (338)
T ss_pred cCCEEEEE----cccHHHHHHHHHHHHcCCCEEEEE
Confidence 57888875 689999999999999999776554
No 109
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=37.49 E-value=98 Score=23.46 Aligned_cols=33 Identities=9% Similarity=0.077 Sum_probs=25.9
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT 38 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~ 38 (95)
+++++|| +-+|++-++++-.|...|++++.++.
T Consensus 123 ~~k~vlv----lGaGGaarAi~~~l~~~g~~~i~i~n 155 (288)
T PRK12749 123 KGKTMVL----LGAGGASTAIGAQGAIEGLKEIKLFN 155 (288)
T ss_pred CCCEEEE----ECCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 4677774 57999999999989889998766553
No 110
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=35.03 E-value=89 Score=18.97 Aligned_cols=30 Identities=20% Similarity=0.132 Sum_probs=19.9
Q ss_pred CCeEEEEeeeechhHHHHHHHHHHHhCCCCEEE
Q 034410 3 TFLCSQVEDIVDTGTTLSSLIANLVSKGASSVS 35 (95)
Q Consensus 3 ~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~ 35 (95)
++.|++++ ++|.+...+...|+..|...+.
T Consensus 65 ~~~vv~~c---~~g~~s~~~a~~L~~~G~~~v~ 94 (105)
T cd01525 65 GKIIVIVS---HSHKHAALFAAFLVKCGVPRVC 94 (105)
T ss_pred CCeEEEEe---CCCccHHHHHHHHHHcCCCCEE
Confidence 45566654 5666666677778888876654
No 111
>COG2604 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.91 E-value=17 Score=30.94 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=33.0
Q ss_pred eechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEE
Q 034410 12 IVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFE 63 (95)
Q Consensus 12 IidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~ 63 (95)
|+.||=||..-...|+++..+.+-+|+=-.-|--.+.++.|| |++.-
T Consensus 229 IVSaGPSL~Kql~lLK~y~~k~~IFcadsal~~L~k~GIkPD-----yVc~l 275 (594)
T COG2604 229 IVSAGPSLEKQLPLLKKYQDKATIFCADSALPILAKHGIKPD-----YVCSL 275 (594)
T ss_pred EEcCCcChhhccHHHHhcccceEEEECCCcchHHHhcCCCCC-----eEEEe
Confidence 578999999999999998877655554211122234578999 98843
No 112
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=34.73 E-value=50 Score=23.94 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=18.7
Q ss_pred echhHHHHHHHHHHHhCCC---CEEEEEE
Q 034410 13 VDTGTTLSSLIANLVSKGA---SSVSVCT 38 (95)
Q Consensus 13 idTG~Tl~~~~~~l~~~g~---~~i~~~~ 38 (95)
++||+|..++++.|.+... ..+.+++
T Consensus 21 ldsGST~~~l~~~L~~~~~~~~~~itvVT 49 (213)
T cd01398 21 LGTGSTVAYFIEALGERVREEGLNIVGVP 49 (213)
T ss_pred ECchHHHHHHHHHHHHhhhccCCCEEEEe
Confidence 6799999999999975421 2455554
No 113
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=34.50 E-value=1e+02 Score=23.29 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=26.4
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT 38 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~ 38 (95)
.+++++ |+-+|++-++++-.|.+.|++++.++.
T Consensus 126 ~~k~vl----ilGaGGaarAi~~aL~~~g~~~i~i~n 158 (283)
T PRK14027 126 KLDSVV----QVGAGGVGNAVAYALVTHGVQKLQVAD 158 (283)
T ss_pred CCCeEE----EECCcHHHHHHHHHHHHCCCCEEEEEc
Confidence 356676 468999999999999999998776653
No 114
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=34.12 E-value=1e+02 Score=18.60 Aligned_cols=29 Identities=10% Similarity=-0.023 Sum_probs=20.5
Q ss_pred CCeEEEEeeeechhHHHHHHHHHHHhCCCCEE
Q 034410 3 TFLCSQVEDIVDTGTTLSSLIANLVSKGASSV 34 (95)
Q Consensus 3 ~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i 34 (95)
++.|++ +..+|.....+...|.+.|...+
T Consensus 54 ~~~iv~---~c~~g~~s~~~~~~L~~~g~~~v 82 (99)
T cd01527 54 ANAIIF---HCRSGMRTQQNAERLAAISAGEA 82 (99)
T ss_pred CCcEEE---EeCCCchHHHHHHHHHHcCCccE
Confidence 355555 46788888888888888877643
No 115
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=33.95 E-value=90 Score=18.94 Aligned_cols=30 Identities=13% Similarity=-0.089 Sum_probs=18.7
Q ss_pred CCeEEEEeeeechhHHHHHHHHHHHhCCCCEEE
Q 034410 3 TFLCSQVEDIVDTGTTLSSLIANLVSKGASSVS 35 (95)
Q Consensus 3 ~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~ 35 (95)
++.|+++.. +|.+...+...|+..|-+.++
T Consensus 66 ~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~ 95 (106)
T cd01519 66 DKELIFYCK---AGVRSKAAAELARSLGYENVG 95 (106)
T ss_pred CCeEEEECC---CcHHHHHHHHHHHHcCCccce
Confidence 456666643 566666667777777766543
No 116
>PF01969 DUF111: Protein of unknown function DUF111; InterPro: IPR002822 The proteins in this family have no known function.; PDB: 3C19_A.
Probab=33.49 E-value=60 Score=26.04 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=32.1
Q ss_pred EeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCcee
Q 034410 9 VEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKI 48 (95)
Q Consensus 9 VDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~ 48 (95)
|||+ ||--+..+.+.|.+.|+..+.+.-+.-|.++.-.
T Consensus 257 iDD~--s~E~lg~~~e~L~~~GAlDV~~~Pi~MKK~RPg~ 294 (382)
T PF01969_consen 257 IDDM--SPEELGYLIERLLEAGALDVFFTPIQMKKNRPGY 294 (382)
T ss_dssp EETT--STTHHHHHHHHHTTSTEEEEEEEEEEETTTEEEE
T ss_pred ccCC--CHHHHHHHHHHHHHcCCceeEEccceEEcCceeE
Confidence 4554 8999999999999999999999999998865543
No 117
>PLN02245 ATP phosphoribosyl transferase
Probab=33.36 E-value=19 Score=29.22 Aligned_cols=12 Identities=50% Similarity=0.714 Sum_probs=10.2
Q ss_pred eeeechhHHHHH
Q 034410 10 EDIVDTGTTLSS 21 (95)
Q Consensus 10 DDIidTG~Tl~~ 21 (95)
=||++||.||++
T Consensus 241 vDIVsTGtTLra 252 (403)
T PLN02245 241 LDLVSSGTTLRE 252 (403)
T ss_pred cchhccHHHHHH
Confidence 389999999875
No 118
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=33.34 E-value=60 Score=24.40 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=30.4
Q ss_pred CeEEEEeeeechhHHHHHHHHHHHhCCC-CEEEEEEEE
Q 034410 4 FLCSQVEDIVDTGTTLSSLIANLVSKGA-SSVSVCTLL 40 (95)
Q Consensus 4 k~vliVDDIidTG~Tl~~~~~~l~~~g~-~~i~~~~l~ 40 (95)
.+||++||+-.+-..+......|+..|. +.++-.++-
T Consensus 193 g~ILflEdv~e~~~~idr~L~qL~~~G~f~~~~gii~G 230 (282)
T cd07025 193 GKILFLEDVGEPPYRIDRMLTQLKLAGVLDKVAGIILG 230 (282)
T ss_pred CCEEEEEcCCCcHhHHHHHHHHHHHhChhhcCCEEEEe
Confidence 4899999999999999999999999987 555555443
No 119
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=32.87 E-value=76 Score=25.44 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=25.6
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEE
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVC 37 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~ 37 (95)
.+||+|+|| -+|.|...++..|.+.| +++...
T Consensus 173 ~~GKrV~VI----G~GaSA~di~~~l~~~g-a~vt~~ 204 (443)
T COG2072 173 LRGKRVLVI----GAGASAVDIAPELAEVG-ASVTLS 204 (443)
T ss_pred cCCCeEEEE----CCCccHHHHHHHHHhcC-CeeEEE
Confidence 368999975 79999999999999988 454433
No 120
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=32.54 E-value=78 Score=24.10 Aligned_cols=36 Identities=14% Similarity=0.007 Sum_probs=29.8
Q ss_pred CeEEEEeeeechhHHHHHHHHHHHhCCC-CEEEEEEE
Q 034410 4 FLCSQVEDIVDTGTTLSSLIANLVSKGA-SSVSVCTL 39 (95)
Q Consensus 4 k~vliVDDIidTG~Tl~~~~~~l~~~g~-~~i~~~~l 39 (95)
.+||++||+-.+-..+......|+..|. +.++-.++
T Consensus 219 g~ILflEdv~e~~~~idR~L~qL~~~G~f~~~~Gii~ 255 (308)
T cd07062 219 GKILFLETSELSPATVERALRQLKLAGVFDKISGIIF 255 (308)
T ss_pred CCEEEEEcCCCCHHHHHHHHHHHHhcCCcccCCEEEE
Confidence 5899999999999999999999999987 55544443
No 121
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=32.16 E-value=63 Score=22.18 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=18.5
Q ss_pred echhHHHHHHHHHHHhCCCCEEEEEE
Q 034410 13 VDTGTTLSSLIANLVSKGASSVSVCT 38 (95)
Q Consensus 13 idTG~Tl~~~~~~l~~~g~~~i~~~~ 38 (95)
+|+|.|..++++.|.+.. .+.+++
T Consensus 25 ld~GtT~~~la~~L~~~~--~ltVvT 48 (161)
T PF00455_consen 25 LDSGTTTLELAKYLPDKK--NLTVVT 48 (161)
T ss_pred EECchHHHHHHHHhhcCC--ceEEEE
Confidence 569999999999998775 444444
No 122
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=31.88 E-value=1.1e+02 Score=24.53 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=27.0
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT 38 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~ 38 (95)
.|++++| +-+|.+-+.++..|.+.|++.+.++.
T Consensus 180 ~~kkvlv----iGaG~~a~~va~~L~~~g~~~I~V~n 212 (414)
T PRK13940 180 SSKNVLI----IGAGQTGELLFRHVTALAPKQIMLAN 212 (414)
T ss_pred cCCEEEE----EcCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 5678874 57999999999999999998766554
No 123
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=31.87 E-value=85 Score=18.97 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=20.5
Q ss_pred CCeEEEEeeeechhHH--HHHHHHHHHhCCCCEEE
Q 034410 3 TFLCSQVEDIVDTGTT--LSSLIANLVSKGASSVS 35 (95)
Q Consensus 3 ~k~vliVDDIidTG~T--l~~~~~~l~~~g~~~i~ 35 (95)
++.|+++. ++|.. ...+.+.|++.|.+++.
T Consensus 50 ~~~ivl~c---~~G~~~~s~~aa~~L~~~G~~~v~ 81 (92)
T cd01532 50 DTPIVVYG---EGGGEDLAPRAARRLSELGYTDVA 81 (92)
T ss_pred CCeEEEEe---CCCCchHHHHHHHHHHHcCccCEE
Confidence 45677775 46643 56777888888887765
No 124
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=30.82 E-value=58 Score=19.62 Aligned_cols=30 Identities=13% Similarity=-0.105 Sum_probs=20.2
Q ss_pred CCeEEEEeeeechhHHHHHHHHHHHhCCCCEEE
Q 034410 3 TFLCSQVEDIVDTGTTLSSLIANLVSKGASSVS 35 (95)
Q Consensus 3 ~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~ 35 (95)
++.|++.++ +|.....+...|...|...++
T Consensus 61 ~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~ 90 (103)
T cd01447 61 DKPFVFYCA---SGWRSALAGKTLQDMGLKPVY 90 (103)
T ss_pred CCeEEEEcC---CCCcHHHHHHHHHHcChHHhE
Confidence 467777763 566666777788878876544
No 125
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=30.75 E-value=1.1e+02 Score=24.27 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=30.8
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT 38 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~ 38 (95)
+.|.+|.||=|+- -|+|....+..|...| .++.+++
T Consensus 156 ~~gl~iaivGDlk-hsRva~S~~~~L~~~g-a~v~lvs 191 (316)
T COG0540 156 LDGLKIAIVGDLK-HSRVAHSNIQALKRFG-AEVYLVS 191 (316)
T ss_pred cCCcEEEEEcccc-chHHHHHHHHHHHHcC-CEEEEEC
Confidence 3688999999997 6899999999999999 5666664
No 126
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=30.65 E-value=1e+02 Score=18.64 Aligned_cols=27 Identities=7% Similarity=0.031 Sum_probs=16.8
Q ss_pred CCeEEEEeeeechhHHHHHHHHHHHhCCCC
Q 034410 3 TFLCSQVEDIVDTGTTLSSLIANLVSKGAS 32 (95)
Q Consensus 3 ~k~vliVDDIidTG~Tl~~~~~~l~~~g~~ 32 (95)
++.|+++ ..+|..-..+.+.|++.|..
T Consensus 61 ~~~ivv~---C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 61 DQEVTVI---CAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCeEEEE---cCCCCcHHHHHHHHHHcCce
Confidence 3455554 45666666677777777764
No 127
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=30.37 E-value=58 Score=26.00 Aligned_cols=31 Identities=32% Similarity=0.442 Sum_probs=23.5
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEEEEEEcCCC
Q 034410 14 DTGTTLSSLIANLVSKGASSVSVCTLLDKPAR 45 (95)
Q Consensus 14 dTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~ 45 (95)
-||+|+.-+.+.|+++....+.++ |.+.|.+
T Consensus 222 GTGGTiaGVskyLkek~~~~v~~~-laDPpGS 252 (391)
T KOG1481|consen 222 GTGGTIAGVSKYLKEKSDGRVAVF-LADPPGS 252 (391)
T ss_pred CCCcchHHHHHHHhhcCCCceEEE-EeCCCCC
Confidence 589999999999998876554443 6666654
No 128
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=29.96 E-value=80 Score=24.21 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=30.1
Q ss_pred CeEEEEeeeechhHHHHHHHHHHHhCCC-CEEEEEEEE
Q 034410 4 FLCSQVEDIVDTGTTLSSLIANLVSKGA-SSVSVCTLL 40 (95)
Q Consensus 4 k~vliVDDIidTG~Tl~~~~~~l~~~g~-~~i~~~~l~ 40 (95)
.+||++||+-..-..+......|+..|. +.++-+++-
T Consensus 195 g~ILfLEdv~e~~y~idR~L~qL~~aG~f~~~~Gii~G 232 (305)
T PRK11253 195 GGILFLEDINEHPFRVERMLLQLHHAGILARQQAIVLG 232 (305)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHhcCccccCCEEEEe
Confidence 4899999999999999999999999986 455555543
No 129
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=29.75 E-value=1.6e+02 Score=22.12 Aligned_cols=33 Identities=9% Similarity=0.197 Sum_probs=25.2
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT 38 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~ 38 (95)
++|++|| +-+|++-++++..|.+.|+++|.++.
T Consensus 125 ~~k~vlI----~GAGGagrAia~~La~~G~~~V~I~~ 157 (289)
T PRK12548 125 KGKKLTV----IGAGGAATAIQVQCALDGAKEITIFN 157 (289)
T ss_pred CCCEEEE----ECCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 4677774 46788889999999999998766543
No 130
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=29.74 E-value=84 Score=21.75 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=16.7
Q ss_pred eEEEEeeeechhHHHHHHHHHHHh
Q 034410 5 LCSQVEDIVDTGTTLSSLIANLVS 28 (95)
Q Consensus 5 ~vliVDDIidTG~Tl~~~~~~l~~ 28 (95)
.|+|+|| .|-.|+..+.+.+.+
T Consensus 34 eIiVvD~--s~D~t~~~~~~~~~~ 55 (232)
T cd06437 34 EIQVLDD--STDETVRLAREIVEE 55 (232)
T ss_pred EEEEEEC--CCCcHHHHHHHHHHH
Confidence 4778888 677888888777654
No 131
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=29.34 E-value=51 Score=20.78 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=25.3
Q ss_pred CCCeEEEEeeeechhHH-----HHHHHHHHHhCCCCEEEEEEEEEcC
Q 034410 2 HTFLCSQVEDIVDTGTT-----LSSLIANLVSKGASSVSVCTLLDKP 43 (95)
Q Consensus 2 ~~k~vliVDDIidTG~T-----l~~~~~~l~~~g~~~i~~~~l~~k~ 43 (95)
.++.++++||+-..-.. ..++.+.+. ..+-.+-.+.+..|.
T Consensus 48 ~~q~vvi~DD~~~~~~~~~~~~~~~l~~l~s-~~~~~~~~a~~~~K~ 93 (107)
T PF00910_consen 48 QGQPVVIIDDFGQDNDGYNYSDESELIRLIS-SNPFQPNMADLEDKG 93 (107)
T ss_pred CCCcEEEEeecCccccccchHHHHHHHHHHh-cCCcccccccHhhCC
Confidence 58999999999876644 444444443 334444555555554
No 132
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=29.13 E-value=36 Score=23.25 Aligned_cols=52 Identities=13% Similarity=-0.012 Sum_probs=33.6
Q ss_pred CeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeC
Q 034410 4 FLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECP 65 (95)
Q Consensus 4 k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~ 65 (95)
+.++| +-+|=||...++.|++..-+.+-+|+=..-+.-.+.++.|| |+.. ++
T Consensus 25 ~~~~I----vgaGPSL~~~i~~lk~~~~~~~iia~~sa~~~L~~~gI~Pd-----~~v~-~D 76 (170)
T PF01973_consen 25 KPAII----VGAGPSLDKNIELLKENRNKAIIIAVNSALKALLKNGIKPD-----FVVS-ID 76 (170)
T ss_pred CeEEE----EecCCCHHHHHHHHHhcccCcEEEEecHHHHHHHHcCceEE-----EEEE-cC
Confidence 56664 57999999999999877655555554222222334578999 7653 44
No 133
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=28.89 E-value=1.1e+02 Score=23.17 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=30.9
Q ss_pred CeEEEEeeeechhHHHHHHHHHHHhCCC-CEEEEEEEEE
Q 034410 4 FLCSQVEDIVDTGTTLSSLIANLVSKGA-SSVSVCTLLD 41 (95)
Q Consensus 4 k~vliVDDIidTG~Tl~~~~~~l~~~g~-~~i~~~~l~~ 41 (95)
.+||++||+-..=..+.....+|+.+|. +.++-+++-.
T Consensus 193 g~ILflEd~~e~~y~idR~L~~L~~aG~f~~i~GiilG~ 231 (284)
T PF02016_consen 193 GKILFLEDVGEDPYRIDRMLTQLKLAGVFDNIAGIILGR 231 (284)
T ss_dssp TEEEEEEEESTBHHHHHHHHHHHHHTTTGGC-SEEEEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHHHhccccccCCCEEEEcC
Confidence 4899999999999999999999999986 5666666544
No 134
>PRK13033 formyl peptide receptor-like 1 inhibitory protein; Reviewed
Probab=28.55 E-value=1.7e+02 Score=19.78 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCCEEEEeecCChhHhhhCCCcee
Q 034410 15 TGTTLSSLIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPDYFVVGYGMDFAELYRNLPYVG 87 (95)
Q Consensus 15 TG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~~~vvgygld~~~~~R~l~~v~ 87 (95)
+|.|+..++-..++.+--.++.+++--+.+.. -+ |+.|.+.- ..+|...|.|-|.
T Consensus 69 kg~tv~dly~i~kkl~~g~vk~avv~ikdgg~-----~~-----yytfdltr--------plee~rkni~vv~ 123 (133)
T PRK13033 69 KAETVNDLYLIVKKLSQGDVKKAVVRIKDGGP-----RD-----YYTFDLTR--------PLEENRKNIKVVK 123 (133)
T ss_pred CCcchhhHHHHHHHhcCCCcceEEEEeecCCC-----Cc-----cEEEeccC--------chHHhccCCceee
Confidence 67888888877777766677777766655432 45 88888754 3456666666543
No 135
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=28.52 E-value=62 Score=23.84 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.2
Q ss_pred eechhHHHHHHHHHHHhC
Q 034410 12 IVDTGTTLSSLIANLVSK 29 (95)
Q Consensus 12 IidTG~Tl~~~~~~l~~~ 29 (95)
.++||+|+.++++.|.+.
T Consensus 25 gLgsGST~~~l~~~L~~~ 42 (220)
T PRK00702 25 GLGTGSTAAYFIDALGER 42 (220)
T ss_pred EECCcHHHHHHHHHHHhh
Confidence 468999999999999654
No 136
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=28.33 E-value=1.5e+02 Score=22.23 Aligned_cols=32 Identities=9% Similarity=0.141 Sum_probs=25.3
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEE
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVC 37 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~ 37 (95)
++++|+ |+-+|++-++++..|.+.|+++|.++
T Consensus 126 ~~k~vl----IlGaGGaaraia~aL~~~G~~~I~I~ 157 (284)
T PRK12549 126 SLERVV----QLGAGGAGAAVAHALLTLGVERLTIF 157 (284)
T ss_pred cCCEEE----EECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 356666 46899999999999999998775544
No 137
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=28.15 E-value=1.4e+02 Score=20.41 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=17.6
Q ss_pred CCCeEEEEeeeec-hhHHHHHHHHHHHh
Q 034410 2 HTFLCSQVEDIVD-TGTTLSSLIANLVS 28 (95)
Q Consensus 2 ~~k~vliVDDIid-TG~Tl~~~~~~l~~ 28 (95)
.+++|+||||+=. +......+.+.|++
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~ 122 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEE 122 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcC
Confidence 4689999998643 33345556666655
No 138
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=27.90 E-value=19 Score=19.67 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=16.2
Q ss_pred eeeechhHHHHHHHHHHHh
Q 034410 10 EDIVDTGTTLSSLIANLVS 28 (95)
Q Consensus 10 DDIidTG~Tl~~~~~~l~~ 28 (95)
..+.+.|.|+.++++.+++
T Consensus 22 pg~~t~G~t~eea~~~~~e 40 (48)
T PF03681_consen 22 PGCFTQGDTLEEALENAKE 40 (48)
T ss_dssp CTCEEEESSHHHHHHHHHH
T ss_pred cChhhcCCCHHHHHHHHHH
Confidence 4678999999999998875
No 139
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=27.47 E-value=1.5e+02 Score=18.34 Aligned_cols=29 Identities=21% Similarity=0.090 Sum_probs=16.7
Q ss_pred CCeEEEEeeeechhHHHHHHHHHHHhCCCCEE
Q 034410 3 TFLCSQVEDIVDTGTTLSSLIANLVSKGASSV 34 (95)
Q Consensus 3 ~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i 34 (95)
++.|++++ .+|.....+...|+..|-+.+
T Consensus 78 ~~~iv~yc---~~g~~s~~~~~~l~~~G~~~v 106 (118)
T cd01449 78 DKPVIVYC---GSGVTACVLLLALELLGYKNV 106 (118)
T ss_pred CCCEEEEC---CcHHHHHHHHHHHHHcCCCCe
Confidence 45666665 345555556666666665543
No 140
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=26.26 E-value=1.9e+02 Score=22.16 Aligned_cols=41 Identities=20% Similarity=0.064 Sum_probs=32.7
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEc
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDK 42 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k 42 (95)
.|++|+||.-=-........+.+.|+++|+...-...|-.+
T Consensus 82 ~g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v~g~i~lt~~ 122 (308)
T PF11382_consen 82 TGRSVAVVTLPGADDEDVDAVRELLEQAGATVTGRITLTDK 122 (308)
T ss_pred CCCEEEEEEcCCCChHHHHHHHHHHHHCCCeEEEEEEEchh
Confidence 68999999855556788899999999999987666666544
No 141
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=25.99 E-value=1.1e+02 Score=24.45 Aligned_cols=34 Identities=15% Similarity=-0.015 Sum_probs=29.7
Q ss_pred CCCCeEEEEeeeechhHHHHHHHHHHHhCCCCEE
Q 034410 1 MHTFLCSQVEDIVDTGTTLSSLIANLVSKGASSV 34 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i 34 (95)
++|++||||-|--.--.-|+.+...++++.|-.|
T Consensus 178 ~~gR~VlIva~~~~~~~dLk~lk~fi~ey~pvlI 211 (395)
T COG4825 178 LRGRHVLIVADEPSFEDDLKSLKPFIKEYQPVLI 211 (395)
T ss_pred hcccEEEEEeCCCChHhHHHHHHHHHHhhCCEEE
Confidence 4789999999999999999999999999987443
No 142
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=25.66 E-value=1.2e+02 Score=23.29 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=25.8
Q ss_pred CCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEE
Q 034410 3 TFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVC 37 (95)
Q Consensus 3 ~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~ 37 (95)
|++++| +-.|++-++++-.|.+.|+++|.++
T Consensus 126 ~~~vli----lGAGGAarAv~~aL~~~g~~~i~V~ 156 (283)
T COG0169 126 GKRVLI----LGAGGAARAVAFALAEAGAKRITVV 156 (283)
T ss_pred CCEEEE----ECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 566775 5799999999999999999876654
No 143
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=25.41 E-value=2e+02 Score=20.06 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=20.8
Q ss_pred CCCCeEEEEeeeechhHHHHH-HHHHHHhCCC
Q 034410 1 MHTFLCSQVEDIVDTGTTLSS-LIANLVSKGA 31 (95)
Q Consensus 1 ~~~k~vliVDDIidTG~Tl~~-~~~~l~~~g~ 31 (95)
++|++|+|| -.|.+... +++.|.+.|+
T Consensus 42 l~gk~vlVi----G~G~~~G~~~a~~L~~~g~ 69 (168)
T cd01080 42 LAGKKVVVV----GRSNIVGKPLAALLLNRNA 69 (168)
T ss_pred CCCCEEEEE----CCcHHHHHHHHHHHhhCCC
Confidence 367888875 56877666 8888888887
No 144
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=25.16 E-value=1.5e+02 Score=19.52 Aligned_cols=35 Identities=14% Similarity=-0.083 Sum_probs=22.1
Q ss_pred CeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE
Q 034410 4 FLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT 38 (95)
Q Consensus 4 k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~ 38 (95)
.+|++-+.-.+|-..+..+.+.+++.|.+++-+++
T Consensus 71 ~~I~~e~~s~~T~ena~~~~~~~~~~~~~~iilVT 105 (155)
T PF02698_consen 71 ERIILEPKSTNTYENARFSKRLLKERGWQSIILVT 105 (155)
T ss_dssp GGEEEE----SHHHHHHHHHHHHHT-SSS-EEEE-
T ss_pred heeEccCCCCCHHHHHHHHHHHHHhhcCCeEEEEC
Confidence 45677677778888888899999988887766655
No 145
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=25.08 E-value=1.4e+02 Score=19.34 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=20.2
Q ss_pred eechh-HHHHHHHHHHHhCCCCEEEEEEEEEcC
Q 034410 12 IVDTG-TTLSSLIANLVSKGASSVSVCTLLDKP 43 (95)
Q Consensus 12 IidTG-~Tl~~~~~~l~~~g~~~i~~~~l~~k~ 43 (95)
++|+| .+-..+.+.|.+.+++.+..+.+-+..
T Consensus 19 liD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H 51 (183)
T smart00849 19 LIDTGPGEAEDLLAELKKLGPKDIDAIILTHGH 51 (183)
T ss_pred EEeCCCChhHHHHHHHHHcCchhhcEEEecccC
Confidence 45576 333356666777777788777665543
No 146
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=24.84 E-value=93 Score=22.88 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.2
Q ss_pred eechhHHHHHHHHHHHhC
Q 034410 12 IVDTGTTLSSLIANLVSK 29 (95)
Q Consensus 12 IidTG~Tl~~~~~~l~~~ 29 (95)
.++||+|..++++.|.+.
T Consensus 20 ~ldsGST~~~~~~~L~~~ 37 (218)
T TIGR00021 20 GLGTGSTVAYFIEALGER 37 (218)
T ss_pred EECCcHHHHHHHHHHHHh
Confidence 367999999999999764
No 147
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=24.66 E-value=1.5e+02 Score=18.86 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=11.1
Q ss_pred chhHHHHHHHHHHHhCCCCEE
Q 034410 14 DTGTTLSSLIANLVSKGASSV 34 (95)
Q Consensus 14 dTG~Tl~~~~~~l~~~g~~~i 34 (95)
.+|.+...+...|++.|.+++
T Consensus 72 ~~G~rs~~aa~~L~~~G~~~v 92 (117)
T cd01522 72 RSGNRSIAAAEAAAQAGFTNV 92 (117)
T ss_pred CCCccHHHHHHHHHHCCCCeE
Confidence 345555555555555555443
No 148
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=24.35 E-value=96 Score=23.44 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=21.2
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCC
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGA 31 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~ 31 (95)
.||+|||+ .-|.||+++++.|....-
T Consensus 173 ~Gk~VlI~----AHGNSlRaLiK~L~~iSd 198 (230)
T COG0588 173 SGKNVLIV----AHGNSLRALIKYLEGISD 198 (230)
T ss_pred CCCeEEEE----ecchhHHHHHHHHhCCCH
Confidence 47899976 579999999999986543
No 149
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=23.49 E-value=2e+02 Score=24.15 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=25.3
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEE
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVC 37 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~ 37 (95)
.||+|+||- .|.|..+++..+.+.|+++|.++
T Consensus 467 ~gk~VvVIG----gG~~a~d~A~~a~r~ga~~Vt~i 498 (654)
T PRK12769 467 AGLNVVVLG----GGDTAMDCVRTALRHGASNVTCA 498 (654)
T ss_pred CCCeEEEEC----CcHHHHHHHHHHHHcCCCeEEEe
Confidence 468888874 88888898888888898876644
No 150
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=23.46 E-value=1.8e+02 Score=17.39 Aligned_cols=34 Identities=12% Similarity=-0.120 Sum_probs=16.5
Q ss_pred CCeEEEEeeeechhHHHHHH-HH-HHHhCCCCEEEE
Q 034410 3 TFLCSQVEDIVDTGTTLSSL-IA-NLVSKGASSVSV 36 (95)
Q Consensus 3 ~k~vliVDDIidTG~Tl~~~-~~-~l~~~g~~~i~~ 36 (95)
+++|++.+.--..+.....+ .. .|.+.|.+.+++
T Consensus 67 ~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~ 102 (113)
T PF00581_consen 67 DKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYI 102 (113)
T ss_dssp TSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEE
T ss_pred cccceeeeecccccchhHHHHHHHHHHHcCCCCEEE
Confidence 46677777333333333332 11 266667665443
No 151
>PF14502 HTH_41: Helix-turn-helix domain
Probab=23.42 E-value=1.1e+02 Score=17.62 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHhCCCCE
Q 034410 15 TGTTLSSLIANLVSKGASS 33 (95)
Q Consensus 15 TG~Tl~~~~~~l~~~g~~~ 33 (95)
+-+|++.+.+.|++.|+-.
T Consensus 19 s~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 19 SRGTIQNALKFLEENGAIK 37 (48)
T ss_pred chhHHHHHHHHHHHCCcEE
Confidence 5689999999999998743
No 152
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=23.27 E-value=1.3e+02 Score=20.56 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=27.7
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT 38 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~ 38 (95)
+|.+|.+|=| --++|...++..+...|.. +.+++
T Consensus 1 ~gl~i~~vGD--~~~rv~~Sl~~~~~~~g~~-~~~~~ 34 (158)
T PF00185_consen 1 KGLKIAYVGD--GHNRVAHSLIELLAKFGME-VVLIA 34 (158)
T ss_dssp TTEEEEEESS--TTSHHHHHHHHHHHHTTSE-EEEES
T ss_pred CCCEEEEECC--CCChHHHHHHHHHHHcCCE-EEEEC
Confidence 4788999987 5689999999999999986 66553
No 153
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=23.18 E-value=1.9e+02 Score=22.36 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=25.8
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEEEEEcCCCc
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCTLLDKPARR 46 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~ 46 (95)
+|.++|++|| ..|.=..++++.+--.| .++.++....+.
T Consensus 201 ~g~r~Lv~D~--~~GLv~aav~eRmgg~G----~i~~~~~~~~~p 239 (299)
T PF04189_consen 201 AGGRVLVVDD--CGGLVVAAVAERMGGSG----NIITLHHGNSPP 239 (299)
T ss_pred CCCeEEEEeC--CCChHHHHHHHHhCCCc----eEEEEeeCCCCC
Confidence 4789999999 56666555665554333 667777766533
No 154
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=23.05 E-value=1.5e+02 Score=22.26 Aligned_cols=31 Identities=13% Similarity=0.277 Sum_probs=25.2
Q ss_pred CeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE
Q 034410 4 FLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT 38 (95)
Q Consensus 4 k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~ 38 (95)
++++ |+-+|++-++++-.|.+.|++++.++.
T Consensus 123 ~~vl----ilGaGGaarAi~~aL~~~g~~~i~i~n 153 (272)
T PRK12550 123 LVVA----LRGSGGMAKAVAAALRDAGFTDGTIVA 153 (272)
T ss_pred CeEE----EECCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 4555 467999999999999999998876664
No 155
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=22.95 E-value=1e+02 Score=20.83 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEEEEEEcC
Q 034410 15 TGTTLSSLIANLVSKGASSVSVCTLLDKP 43 (95)
Q Consensus 15 TG~Tl~~~~~~l~~~g~~~i~~~~l~~k~ 43 (95)
.|.|+.++.+.|++.|+.. |..++.-
T Consensus 114 ~g~tl~ela~~l~~lG~~~---AinLDGG 139 (170)
T PF09992_consen 114 AGMTLDELAQLLKSLGCVD---AINLDGG 139 (170)
T ss_dssp --B-HHHHHHHHHHHT-SE---EEE---G
T ss_pred CCCCHHHHHHHHHHcCcCe---EEEecCC
Confidence 7999999999999988864 4444443
No 156
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=22.83 E-value=1.8e+02 Score=17.26 Aligned_cols=26 Identities=12% Similarity=-0.176 Sum_probs=18.5
Q ss_pred CCeEEEEeeeechhHHHHHHHHHHHhCCC
Q 034410 3 TFLCSQVEDIVDTGTTLSSLIANLVSKGA 31 (95)
Q Consensus 3 ~k~vliVDDIidTG~Tl~~~~~~l~~~g~ 31 (95)
+++++++.+ +|.....+...|++.|.
T Consensus 51 ~~~vvl~c~---~g~~a~~~a~~L~~~G~ 76 (90)
T cd01524 51 DKEIIVYCA---VGLRGYIAARILTQNGF 76 (90)
T ss_pred CCcEEEEcC---CChhHHHHHHHHHHCCC
Confidence 456777743 57777777778888887
No 157
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=22.24 E-value=1.1e+02 Score=20.01 Aligned_cols=35 Identities=17% Similarity=-0.015 Sum_probs=27.9
Q ss_pred CeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE
Q 034410 4 FLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT 38 (95)
Q Consensus 4 k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~ 38 (95)
++|++-+.-.+|...+..+.+.+.+.+.+++.+++
T Consensus 68 ~~I~~e~~s~~T~ena~~~~~~~~~~~~~~i~lVT 102 (150)
T cd06259 68 EAILLEDRSTNTYENARFSAELLRERGIRSVLLVT 102 (150)
T ss_pred HHeeecCCCCCHHHHHHHHHHHHHhcCCCeEEEEC
Confidence 45677777788899999999999999887766665
No 158
>PRK05319 rplD 50S ribosomal protein L4; Provisional
Probab=21.44 E-value=1.3e+02 Score=21.81 Aligned_cols=28 Identities=21% Similarity=0.118 Sum_probs=22.1
Q ss_pred CeEEEEeeeechhHHHHHHHHHHHhCCC
Q 034410 4 FLCSQVEDIVDTGTTLSSLIANLVSKGA 31 (95)
Q Consensus 4 k~vliVDDIidTG~Tl~~~~~~l~~~g~ 31 (95)
.+++||||...+-..-+.+.+.|++.|.
T Consensus 120 ~~l~Vvd~~~~~~~KTk~~~~~l~~lg~ 147 (205)
T PRK05319 120 GRLVVVDDLSLEAPKTKELAAKLKNLGL 147 (205)
T ss_pred CCeEEEeccccCCCCHHHHHHHHHHcCC
Confidence 4689999986566667888899988875
No 159
>PLN02592 ent-copalyl diphosphate synthase
Probab=21.04 E-value=36 Score=29.94 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=18.6
Q ss_pred EEEeeeechhHHHHHHHHHHHh
Q 034410 7 SQVEDIVDTGTTLSSLIANLVS 28 (95)
Q Consensus 7 liVDDIidTG~Tl~~~~~~l~~ 28 (95)
-+|||+.|+++|+.++......
T Consensus 575 tviDD~fD~yGt~eEl~~ft~~ 596 (800)
T PLN02592 575 EAISSYFNKETSSKQRRAFLHE 596 (800)
T ss_pred HhhcccccCCCCHHHHHHHHHH
Confidence 4799999999999998777654
No 160
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=20.80 E-value=1.8e+02 Score=20.64 Aligned_cols=28 Identities=14% Similarity=0.039 Sum_probs=16.7
Q ss_pred chhHHHHHHHHHHHhC--C--CCEEEEEEEEE
Q 034410 14 DTGTTLSSLIANLVSK--G--ASSVSVCTLLD 41 (95)
Q Consensus 14 dTG~Tl~~~~~~l~~~--g--~~~i~~~~l~~ 41 (95)
.+|.-|..+.+.|... + +...|++.|+.
T Consensus 108 ~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllT 139 (193)
T cd01477 108 YLDTGLQAAEQMLAAGKRTSRENYKKVVIVFA 139 (193)
T ss_pred hHHHHHHHHHHHHHhhhccccCCCCeEEEEEe
Confidence 4677777888877642 3 22346555554
No 161
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=20.79 E-value=2.4e+02 Score=19.57 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=16.6
Q ss_pred EEEEeeeechh-HHHHHHHHHHHhCCCCEEEEEEE
Q 034410 6 CSQVEDIVDTG-TTLSSLIANLVSKGASSVSVCTL 39 (95)
Q Consensus 6 vliVDDIidTG-~Tl~~~~~~l~~~g~~~i~~~~l 39 (95)
++|++|.-+.. ..+.++.+.+++.|. .|.++++
T Consensus 111 iil~sd~~~~~~~~~~~~~~~l~~~~I-~v~~Igi 144 (183)
T cd01453 111 LIIFSSLSTCDPGNIYETIDKLKKENI-RVSVIGL 144 (183)
T ss_pred EEEEcCCCcCChhhHHHHHHHHHHcCc-EEEEEEe
Confidence 44555544332 234556666766664 3444444
No 162
>PF08667 BetR: BetR domain; InterPro: IPR013975 CheY-like phosphoacceptor (or receiver [REC]) domain is a common module in a variety of response regulators of the bacterial signal transduction systems. BetR is one of the many response regulators and is encoded mainly in Burkholderia spp. It is a N-terminal helix-turn-helix domain (HTH) and has been shown to be related to the XRE-type HTH domain (IPR001387 from INTERPRO), it has been suggested that BetR would have dimerization, protein-protein interaction, and activation/relief-of-inhibition properties [].
Probab=20.66 E-value=2e+02 Score=20.12 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=26.0
Q ss_pred HHHHHHhCCCCEEEEEEEEEcCCCceeceeecCccCeEEEEEeCCEEEEe
Q 034410 22 LIANLVSKGASSVSVCTLLDKPARRKIQVELVGEGKFYRGFECPDYFVVG 71 (95)
Q Consensus 22 ~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pD~~~~~y~g~~i~~~~vvg 71 (95)
+.+.+-.-|..++.+-+-..-.. .-+..|+ |++....+.|+|.
T Consensus 85 ~~~ai~~~g~~~~~c~a~i~~~~--~~~~~~~-----fvA~~~~~~W~V~ 127 (147)
T PF08667_consen 85 MQDAIFYIGSAEIPCRAWIGQEL--SAGYSPE-----FVALKIHDQWHVF 127 (147)
T ss_pred HHhhhhhccccccceEEeecccc--cCCCCch-----hheeecCCEEEEe
Confidence 34444445666655554332221 2245688 9999999999884
No 163
>cd01644 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) in retrotransposons. This subfamily represents the RT domain of a multifunctional enzyme. C-terminal to the RT domain is a domain homologous to aspartic proteinases (corresponding to Merops family A17) encoded by retrotransposons and retroviruses. RT catalyzes DNA replication from an RNA template and is responsible for the replication of retroelements.
Probab=20.45 E-value=52 Score=23.82 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=16.1
Q ss_pred eEEEEeeeechhHHHHHHHHHH
Q 034410 5 LCSQVEDIVDTGTTLSSLIANL 26 (95)
Q Consensus 5 ~vliVDDIidTG~Tl~~~~~~l 26 (95)
...=||||+..+.|..+..+.+
T Consensus 137 ~~~YvDDili~~~s~~e~~~~~ 158 (213)
T cd01644 137 RNFYVDDILVSTDTLNEAVNVA 158 (213)
T ss_pred HeeecccceecCCCHHHHHHHH
Confidence 3567999999999876544433
No 164
>COG1837 Predicted RNA-binding protein (contains KH domain) [General function prediction only]
Probab=20.41 E-value=1.4e+02 Score=18.72 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=16.2
Q ss_pred chhHHHHHHHHHHHhCCCCE
Q 034410 14 DTGTTLSSLIANLVSKGASS 33 (95)
Q Consensus 14 dTG~Tl~~~~~~l~~~g~~~ 33 (95)
-.|+|++++...+...+.+.
T Consensus 47 k~GRti~AIRTll~a~~~~~ 66 (76)
T COG1837 47 KQGRTIQAIRTLLSAVGSKD 66 (76)
T ss_pred CCChhHHHHHHHHHHhcccC
Confidence 36899999999999877643
No 165
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=20.40 E-value=1.5e+02 Score=23.10 Aligned_cols=38 Identities=18% Similarity=0.099 Sum_probs=31.6
Q ss_pred CeEEEEeeeechhHHHHHHHHHHHhCCC-CEEEEEEEEE
Q 034410 4 FLCSQVEDIVDTGTTLSSLIANLVSKGA-SSVSVCTLLD 41 (95)
Q Consensus 4 k~vliVDDIidTG~Tl~~~~~~l~~~g~-~~i~~~~l~~ 41 (95)
.+||++||+-.+-..+.....+|+..|. ..++..++-.
T Consensus 207 ~~ILfLEd~~~~~~~idR~L~qL~~~gil~~v~gIi~G~ 245 (313)
T COG1619 207 GKILFLEDVNEKPYRIDRMLLQLKLAGILEKVSGIILGR 245 (313)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHHhCcHhhCcEEEEec
Confidence 5799999999999999999999999987 5566655544
No 166
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=20.36 E-value=1.2e+02 Score=21.01 Aligned_cols=31 Identities=10% Similarity=0.144 Sum_probs=23.1
Q ss_pred eeechhHHHHHHHHHHHhCCCCEEEEEEEEE
Q 034410 11 DIVDTGTTLSSLIANLVSKGASSVSVCTLLD 41 (95)
Q Consensus 11 DIidTG~Tl~~~~~~l~~~g~~~i~~~~l~~ 41 (95)
|...+...+..+.+.|+.+|++.+..++...
T Consensus 100 Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~ 130 (143)
T PF10662_consen 100 DLPSDDANIERAKKWLKNAGVKEIFEVSAVT 130 (143)
T ss_pred cCccchhhHHHHHHHHHHcCCCCeEEEECCC
Confidence 5555678889999999999999875444433
No 167
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=20.34 E-value=2.5e+02 Score=22.18 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=25.7
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT 38 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~ 38 (95)
.+++|+||- .|.|-.+++..|...|+++|.++.
T Consensus 272 ~g~~VvViG----gG~~g~e~A~~l~~~G~~~Vtlv~ 304 (457)
T PRK11749 272 VGKRVVVIG----GGNTAMDAARTAKRLGAESVTIVY 304 (457)
T ss_pred CCCeEEEEC----CCHHHHHHHHHHHHcCCCeEEEee
Confidence 467888775 788888888888888887766654
No 168
>KOG3182 consensus Predicted cation transporter [Inorganic ion transport and metabolism]
Probab=20.29 E-value=52 Score=24.50 Aligned_cols=15 Identities=33% Similarity=0.786 Sum_probs=10.3
Q ss_pred CEEEEee-------cCChhHhh
Q 034410 66 DYFVVGY-------GMDFAELY 80 (95)
Q Consensus 66 ~~~vvgy-------gld~~~~~ 80 (95)
.-||+|| |++|.+..
T Consensus 9 ~lWVFGYGSLiW~Pgf~y~~~~ 30 (212)
T KOG3182|consen 9 ALWVFGYGSLIWKPGFHYDESI 30 (212)
T ss_pred eEEEEeecceeecCCCCccccc
Confidence 3599999 56666543
No 169
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=20.25 E-value=1.8e+02 Score=18.79 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEEEE
Q 034410 15 TGTTLSSLIANLVSKGASSVSVCTL 39 (95)
Q Consensus 15 TG~Tl~~~~~~l~~~g~~~i~~~~l 39 (95)
+=.++..+.+.++++|.+++.++++
T Consensus 97 ~~~~vv~v~d~~~~aG~~~v~l~t~ 121 (122)
T TIGR02803 97 DYGDLMKVMNLLRQAGYLKIGLVGL 121 (122)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEec
Confidence 3345666777777777777666553
No 170
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=20.25 E-value=1.9e+02 Score=22.52 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=27.1
Q ss_pred CCCeEEEEeeeechhHHHHHHHHHHHhCCCCEEEEEE
Q 034410 2 HTFLCSQVEDIVDTGTTLSSLIANLVSKGASSVSVCT 38 (95)
Q Consensus 2 ~~k~vliVDDIidTG~Tl~~~~~~l~~~g~~~i~~~~ 38 (95)
++++|+|+ -.|+.-..++..|...|+.++.++-
T Consensus 134 ~~~~Vlvv----G~GG~Gs~ia~~La~~Gvg~i~lvD 166 (376)
T PRK08762 134 LEARVLLI----GAGGLGSPAALYLAAAGVGTLGIVD 166 (376)
T ss_pred hcCcEEEE----CCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 46788887 7899999999999999998766553
No 171
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=20.14 E-value=1.5e+02 Score=23.18 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=36.0
Q ss_pred eechhHHHHHHHHHHHhCCCCEEEEEE---EEEcCCCceeceee-cCccCeEEEEEeCCEEEEeecCChhHhhhCCCc
Q 034410 12 IVDTGTTLSSLIANLVSKGASSVSVCT---LLDKPARRKIQVEL-VGEGKFYRGFECPDYFVVGYGMDFAELYRNLPY 85 (95)
Q Consensus 12 IidTG~Tl~~~~~~l~~~g~~~i~~~~---l~~k~~~~~~~~~p-D~~~~~y~g~~i~~~~vvgygld~~~~~R~l~~ 85 (95)
|+.||+|..++....++.+.....+|. ...-+..- .+..+ + .-....++.|++-.|..|.+..+-|..
T Consensus 38 VlaTGRt~~ev~~l~~~Lgl~~p~I~eNGA~I~~p~~~-~~~~~~~-----~~~~~~~~~~~~~lg~~y~~ir~~L~~ 109 (302)
T PRK12702 38 VLYSLRTRAQLEHLCRQLRLEHPFICEDGSAIYVPEHY-FPAGILD-----EQWQHRPPYYVCALGLPYPCLRHILQQ 109 (302)
T ss_pred EEEcCCCHHHHHHHHHHhCCCCeEEEeCCcEEEEcccc-ccccccc-----cccccCCCceEEecCCCHHHHHHHHHH
Confidence 466888888888877777765422221 11111110 00000 1 011134567788889999887655543
Done!