Query 034411
Match_columns 95
No_of_seqs 109 out of 267
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 03:27:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_l 60S ribosomal protein L 100.0 1.5E-60 5.2E-65 328.8 1.0 94 1-94 1-94 (94)
2 4a18_A RPL37, ribosomal protei 100.0 1.8E-59 6.2E-64 323.5 3.7 92 1-92 1-93 (94)
3 2zkr_2 60S ribosomal protein L 100.0 9E-58 3.1E-62 316.3 4.3 94 1-94 1-94 (97)
4 3j21_e 50S ribosomal protein L 100.0 5.8E-38 2E-42 203.0 0.9 57 1-57 1-59 (62)
5 1vq8_1 50S ribosomal protein L 100.0 8.6E-38 2.9E-42 199.4 1.6 54 1-54 2-56 (57)
6 3v2d_5 50S ribosomal protein L 86.7 0.24 8.3E-06 30.7 1.3 24 14-39 28-51 (60)
7 3j20_Y 30S ribosomal protein S 86.2 0.22 7.7E-06 29.7 0.9 27 14-40 17-46 (50)
8 2k4x_A 30S ribosomal protein S 84.7 0.38 1.3E-05 29.2 1.4 27 14-40 16-45 (55)
9 3j21_g 50S ribosomal protein L 84.5 0.41 1.4E-05 29.1 1.5 23 17-40 15-37 (51)
10 2zjr_Z 50S ribosomal protein L 81.2 0.6 2.1E-05 28.9 1.4 25 13-39 27-51 (60)
11 2xzm_9 RPS31E; ribosome, trans 76.7 0.69 2.4E-05 34.1 0.7 26 15-40 112-140 (189)
12 2k2d_A Ring finger and CHY zin 73.6 1.5 5.1E-05 28.2 1.6 32 12-50 33-67 (79)
13 3u5c_f 40S ribosomal protein S 65.8 2.3 7.9E-05 29.7 1.4 27 14-40 116-147 (152)
14 2apo_B Ribosome biogenesis pro 64.9 2.8 9.6E-05 26.1 1.5 21 17-40 7-27 (60)
15 2kv1_A Methionine-R-sulfoxide 56.2 5.4 0.00018 28.1 1.8 27 15-41 19-45 (124)
16 1nui_A DNA primase/helicase; z 52.7 4.5 0.00015 29.1 1.0 26 15-40 13-42 (255)
17 2kao_A Methionine-R-sulfoxide 50.9 7.4 0.00025 27.4 1.9 29 13-41 17-45 (124)
18 3mao_A Methionine-R-sulfoxide 49.5 5.4 0.00019 27.3 1.0 28 14-41 11-38 (105)
19 1k81_A EIF-2-beta, probable tr 49.3 4.1 0.00014 22.6 0.3 23 17-39 1-29 (36)
20 2od1_A Protein CBFA2T1; zinc f 48.1 6.8 0.00023 23.1 1.1 32 4-39 1-32 (60)
21 2aus_D NOP10, ribosome biogene 47.2 8.5 0.00029 24.0 1.5 20 18-40 7-26 (60)
22 1vk6_A NADH pyrophosphatase; 1 47.2 7.9 0.00027 28.8 1.6 26 14-39 105-133 (269)
23 3e0o_A Peptide methionine sulf 46.1 14 0.00049 26.4 2.8 32 10-41 36-67 (144)
24 2l1u_A MSRB2, methionine-R-sul 45.2 12 0.0004 26.8 2.2 28 14-41 35-62 (143)
25 2lcq_A Putative toxin VAPC6; P 45.2 8.7 0.0003 26.1 1.5 27 15-41 131-158 (165)
26 2k1p_A Zinc finger RAN-binding 45.1 13 0.00045 20.0 1.9 24 17-41 7-30 (33)
27 3hcj_A MSRB, peptide methionin 45.0 15 0.00051 26.7 2.7 30 12-41 46-75 (154)
28 3r8s_0 50S ribosomal protein L 44.5 7.9 0.00027 23.3 1.1 23 14-39 25-47 (56)
29 2d8z_A Four and A half LIM dom 43.7 13 0.00044 21.2 1.9 16 25-40 25-40 (70)
30 1nyp_A Pinch protein; LIM doma 43.6 10 0.00035 21.5 1.4 17 25-41 25-41 (66)
31 1zfo_A LAsp-1; LIM domain, zin 43.6 12 0.00042 19.5 1.6 19 17-35 4-22 (31)
32 2dar_A PDZ and LIM domain prot 43.4 12 0.00041 22.7 1.8 26 16-41 25-61 (90)
33 1twf_L ABC10-alpha, DNA-direct 43.3 13 0.00046 23.3 2.0 27 13-39 25-53 (70)
34 3hcg_A Peptide methionine sulf 43.2 7.6 0.00026 27.9 1.0 29 13-41 40-68 (146)
35 2k8d_A Peptide methionine sulf 42.3 16 0.00054 26.4 2.5 29 13-41 58-86 (151)
36 3pwf_A Rubrerythrin; non heme 42.1 12 0.00042 26.4 1.9 29 15-43 137-165 (170)
37 1pft_A TFIIB, PFTFIIBN; N-term 41.4 10 0.00035 21.4 1.2 24 16-39 5-32 (50)
38 3cxk_A Methionine-R-sulfoxide 39.7 20 0.00067 26.3 2.7 28 14-41 71-98 (164)
39 1x62_A C-terminal LIM domain p 37.9 33 0.0011 20.1 3.2 28 13-40 12-50 (79)
40 2dj7_A Actin-binding LIM prote 37.3 39 0.0013 20.2 3.4 38 3-41 3-52 (80)
41 2cur_A Skeletal muscle LIM-pro 36.7 17 0.00059 20.7 1.7 23 18-40 7-40 (69)
42 1x64_A Alpha-actinin-2 associa 36.4 36 0.0012 20.4 3.2 28 13-40 22-60 (89)
43 4ayb_P DNA-directed RNA polyme 36.4 18 0.00062 21.9 1.7 29 18-46 5-39 (48)
44 1dl6_A Transcription factor II 35.3 26 0.0009 20.8 2.4 23 17-39 12-38 (58)
45 3a43_A HYPD, hydrogenase nicke 35.1 17 0.00057 24.9 1.6 30 13-42 67-118 (139)
46 3h0g_L DNA-directed RNA polyme 35.0 23 0.0008 22.0 2.2 29 12-40 17-47 (63)
47 1x6a_A LIMK-2, LIM domain kina 33.9 49 0.0017 19.3 3.5 26 15-40 14-50 (81)
48 2ayj_A 50S ribosomal protein L 33.2 18 0.00063 22.4 1.4 25 15-40 18-42 (56)
49 2cor_A Pinch protein; LIM doma 32.9 35 0.0012 20.2 2.7 28 15-42 14-52 (79)
50 2kdx_A HYPA, hydrogenase/ureas 32.0 22 0.00074 23.3 1.7 30 13-42 70-101 (119)
51 2d74_B Translation initiation 31.1 25 0.00085 25.0 2.0 24 16-39 104-133 (148)
52 3e0m_A Peptide methionine sulf 30.7 31 0.0011 27.3 2.7 31 11-41 204-234 (313)
53 1mzb_A Ferric uptake regulatio 30.6 13 0.00046 24.3 0.5 12 14-25 89-100 (136)
54 3k1f_M Transcription initiatio 30.3 22 0.00076 26.9 1.7 39 13-51 18-70 (197)
55 3irb_A Uncharacterized protein 30.2 16 0.00054 25.1 0.9 24 15-39 46-69 (145)
56 1faq_A RAF-1; transferase, ser 29.7 16 0.00056 20.2 0.7 26 14-41 12-37 (52)
57 2d8x_A Protein pinch; LIM doma 29.4 31 0.001 19.6 1.9 16 25-40 25-40 (70)
58 3h0g_I DNA-directed RNA polyme 28.7 22 0.00075 23.5 1.3 23 17-39 5-34 (113)
59 2lk0_A RNA-binding protein 5; 28.5 28 0.00095 18.5 1.5 23 17-40 6-28 (32)
60 2dlo_A Thyroid receptor-intera 28.4 29 0.00098 20.4 1.7 26 15-40 14-50 (81)
61 3jyw_9 60S ribosomal protein L 28.4 30 0.001 22.1 1.9 22 18-39 28-52 (72)
62 2h9a_A Carbon monoxide dehydro 28.2 12 0.00042 30.4 0.0 12 29-40 12-23 (445)
63 1x3h_A Leupaxin; paxillin fami 28.1 29 0.001 20.2 1.7 24 17-40 16-50 (80)
64 2fnf_X Putative RAS effector N 26.8 31 0.0011 21.1 1.7 27 13-40 32-58 (72)
65 1gh9_A 8.3 kDa protein (gene M 26.8 18 0.00062 22.8 0.6 29 17-47 5-38 (71)
66 3eyy_A Putative iron uptake re 26.7 17 0.00059 24.3 0.5 13 13-25 87-99 (145)
67 3cw2_K Translation initiation 26.6 30 0.001 24.2 1.8 25 15-39 102-132 (139)
68 3mwm_A ZUR, putative metal upt 26.3 18 0.0006 24.0 0.5 12 14-25 85-96 (139)
69 4djd_C C/Fe-SP, corrinoid/iron 26.3 22 0.00075 29.4 1.2 12 29-40 12-23 (446)
70 2fe3_A Peroxide operon regulat 26.2 18 0.00061 24.0 0.5 12 14-25 91-102 (145)
71 2gnr_A Conserved hypothetical 26.2 23 0.00077 24.5 1.1 51 15-78 46-97 (145)
72 1rfh_A RAS association (ralgds 26.1 28 0.00097 20.3 1.4 27 13-40 19-45 (59)
73 2cuq_A Four and A half LIM dom 25.9 35 0.0012 19.8 1.8 24 17-40 16-50 (80)
74 1kbe_A Kinase suppressor of RA 25.6 20 0.0007 20.8 0.6 23 16-40 14-36 (49)
75 1vq8_Z 50S ribosomal protein L 25.4 20 0.0007 23.1 0.7 24 16-39 27-53 (83)
76 2xig_A Ferric uptake regulatio 24.8 20 0.00067 24.1 0.5 12 14-25 97-108 (150)
77 2e9h_A EIF-5, eukaryotic trans 24.6 27 0.00093 25.1 1.3 24 16-39 103-134 (157)
78 2row_A RHO-associated protein 24.4 33 0.0011 22.1 1.5 27 14-40 33-63 (84)
79 2w57_A Ferric uptake regulatio 23.4 22 0.00074 23.9 0.5 12 14-25 88-99 (150)
80 4ets_A Ferric uptake regulatio 23.4 22 0.00074 24.4 0.5 12 14-25 105-116 (162)
81 2con_A RUH-035 protein, NIN on 23.1 40 0.0014 21.7 1.7 39 13-53 11-50 (79)
82 1hxr_A Guanine nucleotide exch 22.5 25 0.00084 23.9 0.7 18 12-29 8-25 (115)
83 2g2k_A EIF-5, eukaryotic trans 22.3 28 0.00095 25.3 0.9 24 16-39 96-127 (170)
84 3qt1_I DNA-directed RNA polyme 22.0 45 0.0015 22.9 2.0 23 17-39 25-54 (133)
85 1twf_I B12.6, DNA-directed RNA 22.0 27 0.00094 23.3 0.8 23 17-39 5-34 (122)
86 2yuu_A NPKC-delta, protein kin 21.4 32 0.0011 21.2 1.0 28 14-41 26-55 (83)
87 2o03_A Probable zinc uptake re 21.4 25 0.00086 22.8 0.5 15 14-29 81-95 (131)
88 2co8_A NEDD9 interacting prote 21.0 1.2E+02 0.004 17.9 3.5 27 14-40 13-51 (82)
89 1nee_A EIF-2-beta, probable tr 21.0 29 0.00098 24.3 0.8 24 16-39 102-131 (138)
90 1ptq_A Protein kinase C delta 21.0 41 0.0014 18.3 1.3 27 14-40 9-37 (50)
91 3iz5_m 60S ribosomal protein L 20.8 31 0.0011 23.0 0.9 22 18-39 38-62 (92)
92 3k7a_M Transcription initiatio 20.6 46 0.0016 25.3 1.9 41 8-49 14-68 (345)
93 3iz5_i 60S ribosomal protein L 20.5 51 0.0017 22.9 1.9 71 5-80 15-97 (119)
94 2gmg_A Hypothetical protein PF 20.5 48 0.0016 22.6 1.8 24 15-39 66-92 (105)
95 1x0t_A Ribonuclease P protein 20.4 34 0.0012 22.9 1.0 24 16-39 65-102 (120)
96 3u5e_g 60S ribosomal protein L 20.2 49 0.0017 23.1 1.8 56 23-78 28-93 (121)
97 3izc_m 60S ribosomal protein R 20.2 32 0.0011 23.0 0.8 22 18-39 38-62 (92)
No 1
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=100.00 E-value=1.5e-60 Score=328.85 Aligned_cols=94 Identities=88% Similarity=1.474 Sum_probs=91.5
Q ss_pred CCCCCCCCCCCCCCcccccccCCCcccccccCccccccccccccccCCccccccccccccccccccccchhhhhccCcCc
Q 034411 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFRE 80 (95)
Q Consensus 1 MtKGT~SfGKr~~ktH~lCrRCG~~syH~qK~~Ca~CGyps~k~R~YnWs~Ka~rr~ttGTGrmr~lk~v~rrfkngfre 80 (95)
|+||||||||+|+||||||+|||++|||+||++|++||||++++|+||||.||++|+|||||||||||+|+|||+|||||
T Consensus 1 MtKGT~SfGKr~~KtHtlCrRCG~~syH~qK~~Ca~CGyps~r~R~YnWs~Ka~rR~ttGTGRmr~lk~v~rrfkngfre 80 (94)
T 3iz5_l 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFRE 80 (94)
T ss_dssp CCSTHHHHHHCCCCSEEECTTTCSEEEEGGGTEETTTCSSCSSCCCCSSSCHHHHHHHHCCCCCCHHHHHHHHHCCCCCC
T ss_pred CCCCCCCccccCCCccceecCcCchhhhcccccccccCCchhhcccccHHHhhccccCCCcchhhHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccC
Q 034411 81 GTEAAPRKKNVAAS 94 (95)
Q Consensus 81 Gt~~~~~~~~~~~~ 94 (95)
||+|+|++++++++
T Consensus 81 gt~~~~~~~~~~~~ 94 (94)
T 3iz5_l 81 GTEATPRKRAAAAN 94 (94)
T ss_dssp CCCCSSSCCSSSCC
T ss_pred CCCCCCcccccCCC
Confidence 99999999887653
No 2
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=100.00 E-value=1.8e-59 Score=323.50 Aligned_cols=92 Identities=54% Similarity=1.059 Sum_probs=88.5
Q ss_pred CCCCCCCCCCCCCCcccccccCCCcccccccCccccccccccccccCC-ccccccccccccccccccccchhhhhccCcC
Q 034411 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYN-WSVKAIRRKTTGTGRMRYLRHVPRRFKSNFR 79 (95)
Q Consensus 1 MtKGT~SfGKr~~ktH~lCrRCG~~syH~qK~~Ca~CGyps~k~R~Yn-Ws~Ka~rr~ttGTGrmr~lk~v~rrfkngfr 79 (95)
|+||||||||+|+||||||+|||++|||+||++|++||||++++|+|| ||.||++|+|||||||||||+|+|||+||||
T Consensus 1 MtKGT~SfGKr~~KtHtlCrRCG~~syH~qK~~Ca~CGyps~r~R~Yn~Ws~Ka~rR~ttGTGRmr~lk~v~rrfkngFr 80 (94)
T 4a18_A 1 MTRGTPAFGKRHQKTHTLCRRCGKATYHKQKLRCAACGYPDAKMRRYDGWGQKVRDRKGQGTGRMRYMKTIARRAKNGFR 80 (94)
T ss_dssp -CTTHHHHTTCCCCCEEECTTTCSEEEETTTTEESSSCGGGSSCCCCTTTCTTGGGTSSTTTSCCTTTHHHHHHHHTTCC
T ss_pred CCCCCCCccccCCCccceecCcCchhhhhccccccccCCcHHHhcCccHHHHHhccccCCCcchhHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred cCCCCCccccccc
Q 034411 80 EGTEAAPRKKNVA 92 (95)
Q Consensus 80 eGt~~~~~~~~~~ 92 (95)
|||+|+|+++++.
T Consensus 81 egt~~~~~~~~a~ 93 (94)
T 4a18_A 81 SGTQAAPKVKAAT 93 (94)
T ss_dssp CSCCCCCSSCCC-
T ss_pred cCCCCCCcccccc
Confidence 9999999987653
No 3
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=100.00 E-value=9e-58 Score=316.29 Aligned_cols=94 Identities=67% Similarity=1.136 Sum_probs=50.9
Q ss_pred CCCCCCCCCCCCCCcccccccCCCcccccccCccccccccccccccCCccccccccccccccccccccchhhhhccCcCc
Q 034411 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFRE 80 (95)
Q Consensus 1 MtKGT~SfGKr~~ktH~lCrRCG~~syH~qK~~Ca~CGyps~k~R~YnWs~Ka~rr~ttGTGrmr~lk~v~rrfkngfre 80 (95)
|+|||+||||+|+|+|++|+|||+.+||+||++|++||||++++|+||||.||+||+|||||||||||+|+|||+|||||
T Consensus 1 M~KGT~SfGkr~~KtH~lCrRCG~~sfH~qK~~CgkCGYpa~k~R~ynWs~Ka~rr~ttgtGrmr~lk~v~rrfkngfre 80 (97)
T 2zkr_2 1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFRE 80 (97)
T ss_dssp --CCSSSCSCSCCCCEECCTTTCSSCEETTSCCBTTTCTTTSSCCCCSSSSCC---------------------------
T ss_pred CCCCCCCcccccCCCCCcCCCCCCccCcCccccCcccCCchHhccCcchhhhhhhccCCCcceehHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccC
Q 034411 81 GTEAAPRKKNVAAS 94 (95)
Q Consensus 81 Gt~~~~~~~~~~~~ 94 (95)
|++|+|++++++++
T Consensus 81 g~~~~~~~~~~~~~ 94 (97)
T 2zkr_2 81 GTTPKPKRAAVAAS 94 (97)
T ss_dssp --------------
T ss_pred CCCCcccccccccc
Confidence 99999988777653
No 4
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.8e-38 Score=203.01 Aligned_cols=57 Identities=49% Similarity=1.025 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCCC-cccccccCCCcccccccCccccccc-cccccccCCccccccccc
Q 034411 1 MGKGTGSFGKRRNK-THTLCVRCGRRSFHIQKSRCSACAY-PAARVRKYNWSVKAIRRK 57 (95)
Q Consensus 1 MtKGT~SfGKr~~k-tH~lCrRCG~~syH~qK~~Ca~CGy-ps~k~R~YnWs~Ka~rr~ 57 (95)
|+||||||||+|++ |||||||||++|||+||++|++||| |++++|+|||+.||+++.
T Consensus 1 MtKGT~SfGKr~~k~tH~lCrRCG~~syH~qK~~Ca~CGygps~r~R~YnWs~Ka~rr~ 59 (62)
T 3j21_e 1 MGSGTATFGKRNSTPTHIRCRRCGRVSYNVKKGYCAACGFGRSRRLRKYRWSKKWKKKK 59 (62)
T ss_dssp CCSCHHHHCCCSSSCCCCBCSSSCSBCEETTTTEETTTCTTTCSSCCCCTTCSHHHHHH
T ss_pred CCCCCccccccCCCCceeeecccCcchhccccccccccCCchhhhhccccHHHHhhccc
Confidence 99999999999999 9999999999999999999999999 999999999999998875
No 5
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=100.00 E-value=8.6e-38 Score=199.40 Aligned_cols=54 Identities=46% Similarity=0.924 Sum_probs=53.3
Q ss_pred CCCCCCCCCCCCCCcccccccCCCcccccccCccccccc-cccccccCCcccccc
Q 034411 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAY-PAARVRKYNWSVKAI 54 (95)
Q Consensus 1 MtKGT~SfGKr~~ktH~lCrRCG~~syH~qK~~Ca~CGy-ps~k~R~YnWs~Ka~ 54 (95)
|+|||+||||||+||||||||||++|||+||++|++||| |++++|+||||.||+
T Consensus 2 MtKGT~SfGKr~~ktH~~CrRCG~~syH~qK~~Ca~CGygpa~r~R~ynWs~Kak 56 (57)
T 1vq8_1 2 TGAGTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSKAG 56 (57)
T ss_dssp CCSSHHHHTTCCCCCEEECTTTCSEEEETTTTEETTTCTTTCSSCCCCGGGSCTT
T ss_pred CCCCCCcccccCCCccccccccCChhhhccccccccccCCchhhhcCcchhhhhc
Confidence 899999999999999999999999999999999999999 999999999999996
No 6
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=86.74 E-value=0.24 Score=30.75 Aligned_cols=24 Identities=25% Similarity=0.678 Sum_probs=21.5
Q ss_pred CcccccccCCCcccccccCccccccc
Q 034411 14 KTHTLCVRCGRRSFHIQKSRCSACAY 39 (95)
Q Consensus 14 ktH~lCrRCG~~syH~qK~~Ca~CGy 39 (95)
.+-+.|.-||. +|+....|..|||
T Consensus 28 p~l~~c~~cGe--~~~~H~vc~~CG~ 51 (60)
T 3v2d_5 28 PTLVPCPECKA--MKPPHTVCPECGY 51 (60)
T ss_dssp CCCEECTTTCC--EECTTSCCTTTCE
T ss_pred CceeECCCCCC--eecceEEcCCCCc
Confidence 45688999998 8999999999998
No 7
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=86.17 E-value=0.22 Score=29.67 Aligned_cols=27 Identities=33% Similarity=0.929 Sum_probs=20.7
Q ss_pred CcccccccCCCccc---ccccCcccccccc
Q 034411 14 KTHTLCVRCGRRSF---HIQKSRCSACAYP 40 (95)
Q Consensus 14 ktH~lCrRCG~~sy---H~qK~~Ca~CGyp 40 (95)
...-.|.+||...| |.....|++|||-
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred EecccCCCCCCceEEecCCCeEECCCCCCE
Confidence 35667999998554 5567799999984
No 8
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=84.68 E-value=0.38 Score=29.16 Aligned_cols=27 Identities=37% Similarity=1.049 Sum_probs=21.9
Q ss_pred CcccccccCCCccc---ccccCcccccccc
Q 034411 14 KTHTLCVRCGRRSF---HIQKSRCSACAYP 40 (95)
Q Consensus 14 ktH~lCrRCG~~sy---H~qK~~Ca~CGyp 40 (95)
+..-.|+.||.-.| |.....|+.|||-
T Consensus 16 ~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp CSSCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred EccccCcCCCCceeEeccCCEEECCCCCCE
Confidence 45788999999554 6677899999995
No 9
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=84.53 E-value=0.41 Score=29.10 Aligned_cols=23 Identities=30% Similarity=0.879 Sum_probs=20.5
Q ss_pred cccccCCCcccccccCcccccccc
Q 034411 17 TLCVRCGRRSFHIQKSRCSACAYP 40 (95)
Q Consensus 17 ~lCrRCG~~syH~qK~~Ca~CGyp 40 (95)
-+|++||.+ -+..-..|-+|||.
T Consensus 15 ~iCpkC~a~-~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGAT-NPWGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCCE-ECTTCSSCSSSSSC
T ss_pred ccCCCCCCc-CCCCceecCCCCCc
Confidence 469999999 78888999999996
No 10
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=81.21 E-value=0.6 Score=28.86 Aligned_cols=25 Identities=24% Similarity=0.712 Sum_probs=21.9
Q ss_pred CCcccccccCCCcccccccCccccccc
Q 034411 13 NKTHTLCVRCGRRSFHIQKSRCSACAY 39 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~qK~~Ca~CGy 39 (95)
..+-+.|.-||.. ++....|..|||
T Consensus 27 ~p~l~~c~~cG~~--~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 27 APNLTECPQCHGK--KLSHHICPNCGY 51 (60)
T ss_dssp CCCCEECTTTCCE--ECTTBCCTTTCB
T ss_pred CCCceECCCCCCE--eCCceEcCCCCc
Confidence 3467789999987 999999999997
No 11
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=76.75 E-value=0.69 Score=34.11 Aligned_cols=26 Identities=23% Similarity=0.664 Sum_probs=21.2
Q ss_pred cccccccCCC---cccccccCcccccccc
Q 034411 15 THTLCVRCGR---RSFHIQKSRCSACAYP 40 (95)
Q Consensus 15 tH~lCrRCG~---~syH~qK~~Ca~CGyp 40 (95)
.+-.|++||- -+.|.....|+.|||-
T Consensus 112 ~~~~Cp~Cg~g~fma~h~dR~~CGkC~~t 140 (189)
T 2xzm_9 112 QQKGCPKCGPGIFMAKHYDRHYCGKCHLT 140 (189)
T ss_dssp CSEECSTTCSSCEEEECSSCEEETTTCCC
T ss_pred ccccCCccCCCccccCccCCCccCCceeE
Confidence 4578999994 4668888899999984
No 12
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=73.56 E-value=1.5 Score=28.17 Aligned_cols=32 Identities=38% Similarity=0.792 Sum_probs=25.8
Q ss_pred CCCcccccccCCCcc---cccccCccccccccccccccCCcc
Q 034411 12 RNKTHTLCVRCGRRS---FHIQKSRCSACAYPAARVRKYNWS 50 (95)
Q Consensus 12 ~~ktH~lCrRCG~~s---yH~qK~~Ca~CGyps~k~R~YnWs 50 (95)
..+..|+|.-|+..+ ||+--..|..|| +||.-
T Consensus 33 ~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~-------SyNTr 67 (79)
T 2k2d_A 33 NMTVDILCNDCNGRSTVQFHILGMKCKICE-------SYNTA 67 (79)
T ss_dssp CCEEEEEESSSCCEEEEECCTTCCCCTTTS-------CCCEE
T ss_pred CCEeEEECCCCCCCccCCceeecccCcCCC-------CcCeE
Confidence 346789999999875 788877899999 77753
No 13
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=65.78 E-value=2.3 Score=29.70 Aligned_cols=27 Identities=26% Similarity=0.554 Sum_probs=21.6
Q ss_pred Cccccccc--CCCcc---cccccCcccccccc
Q 034411 14 KTHTLCVR--CGRRS---FHIQKSRCSACAYP 40 (95)
Q Consensus 14 ktH~lCrR--CG~~s---yH~qK~~Ca~CGyp 40 (95)
..+-.|.+ ||.-. .|..-..|++|||-
T Consensus 116 ~~~~~c~~~~cg~g~fma~h~~r~~cgkc~~t 147 (152)
T 3u5c_f 116 KLRRECSNPTCGAGVFLANHKDRLYCGKCHSV 147 (152)
T ss_dssp CCSCBCCSTTSCSSSBEEECSSCEEESSSSSC
T ss_pred ECcCcCCCccCCCceEecccCCCcccCCCceE
Confidence 34677999 99855 57888899999984
No 14
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=64.86 E-value=2.8 Score=26.13 Aligned_cols=21 Identities=29% Similarity=0.781 Sum_probs=17.3
Q ss_pred cccccCCCcccccccCcccccccc
Q 034411 17 TLCVRCGRRSFHIQKSRCSACAYP 40 (95)
Q Consensus 17 ~lCrRCG~~syH~qK~~Ca~CGyp 40 (95)
..|..||.-+. +.+|..||-+
T Consensus 7 r~C~~CgvYTL---k~~CP~CG~~ 27 (60)
T 2apo_B 7 KKCPKCGLYTL---KEICPKCGEK 27 (60)
T ss_dssp EECTTTCCEES---SSBCSSSCSB
T ss_pred eeCCCCCCEec---cccCcCCCCc
Confidence 46999977666 8999999985
No 15
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=56.21 E-value=5.4 Score=28.09 Aligned_cols=27 Identities=19% Similarity=0.495 Sum_probs=24.6
Q ss_pred cccccccCCCcccccccCccccccccc
Q 034411 15 THTLCVRCGRRSFHIQKSRCSACAYPA 41 (95)
Q Consensus 15 tH~lCrRCG~~syH~qK~~Ca~CGyps 41 (95)
=--.|..||...|.-..|.-+.||.||
T Consensus 19 G~Y~C~~Cg~pLF~S~~KfdSg~GWPS 45 (124)
T 2kv1_A 19 GVYVCAKCSYELFSSHSKYAHSSPWPA 45 (124)
T ss_dssp EEEEETTTCCBCCCTTSCCCCCSSSCC
T ss_pred EEEEecCCCCcccccCCcccCCCCCce
Confidence 356899999999999999999999995
No 16
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=52.74 E-value=4.5 Score=29.11 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=19.1
Q ss_pred cccccccCCC-cccccc---cCcccccccc
Q 034411 15 THTLCVRCGR-RSFHIQ---KSRCSACAYP 40 (95)
Q Consensus 15 tH~lCrRCG~-~syH~q---K~~Ca~CGyp 40 (95)
-|..|.-||. .+|.+- .-.|.+||+-
T Consensus 13 ~~~~CP~Cg~~d~~~~~~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 13 YHIPCDNCGSSDGNSLFSDGHTFCYVCEKW 42 (255)
T ss_dssp EEECCSSSCCSSCEEEETTSCEEETTTCCE
T ss_pred cCCcCCCCCCCCCceEeCCCCeecccCCCc
Confidence 4999999998 344432 3589999973
No 17
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=50.92 E-value=7.4 Score=27.36 Aligned_cols=29 Identities=17% Similarity=0.464 Sum_probs=25.7
Q ss_pred CCcccccccCCCcccccccCccccccccc
Q 034411 13 NKTHTLCVRCGRRSFHIQKSRCSACAYPA 41 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~qK~~Ca~CGyps 41 (95)
.+---.|..||...|--..|.-+.||.||
T Consensus 17 ~~GiY~C~~Cg~pLF~S~~KFdSG~GWPS 45 (124)
T 2kao_A 17 EPGVYVCAKCSYELFSSHSKYAHSSPWPA 45 (124)
T ss_dssp CCCEEEESSSCCCCCCTTTSCCCCCSSCC
T ss_pred CCEEEEeCCCCCccccCcccccCCCCChh
Confidence 34556899999999999999999999994
No 18
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=49.47 E-value=5.4 Score=27.27 Aligned_cols=28 Identities=21% Similarity=0.547 Sum_probs=24.9
Q ss_pred CcccccccCCCcccccccCccccccccc
Q 034411 14 KTHTLCVRCGRRSFHIQKSRCSACAYPA 41 (95)
Q Consensus 14 ktH~lCrRCG~~syH~qK~~Ca~CGyps 41 (95)
.-.-.|..||...|--..|.-+.||.||
T Consensus 11 ~G~Y~C~~Cg~pLF~S~~KFdSg~GWPS 38 (105)
T 3mao_A 11 PGVYVCAKCGYELFSSRSKYAHSSPWPA 38 (105)
T ss_dssp SEEEEETTTCCEEEEGGGEECCSSSSCE
T ss_pred CEEEEcCCCCCccccCCcccCCCCCChh
Confidence 3456899999999999999999999994
No 19
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=49.32 E-value=4.1 Score=22.57 Aligned_cols=23 Identities=35% Similarity=0.898 Sum_probs=17.2
Q ss_pred cccccCCCcccccccC------ccccccc
Q 034411 17 TLCVRCGRRSFHIQKS------RCSACAY 39 (95)
Q Consensus 17 ~lCrRCG~~syH~qK~------~Ca~CGy 39 (95)
++|.-|++.--.+.++ .|.+||+
T Consensus 1 VlC~~C~~peT~l~~~~~~~~l~C~aCG~ 29 (36)
T 1k81_A 1 VICRECGKPDTKIIKEGRVHLLKCMACGA 29 (36)
T ss_dssp CCCSSSCSCEEEEEEETTEEEEEEETTTE
T ss_pred CCCcCCCCCCcEEEEeCCcEEEEhhcCCC
Confidence 3688888887777664 4888886
No 20
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=48.06 E-value=6.8 Score=23.07 Aligned_cols=32 Identities=28% Similarity=0.736 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCcccccccCCCcccccccCccccccc
Q 034411 4 GTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAY 39 (95)
Q Consensus 4 GT~SfGKr~~ktH~lCrRCG~~syH~qK~~Ca~CGy 39 (95)
|.|+++--+...-..|.-||..+ ...|+.|..
T Consensus 1 ~~~~~~~~~~~~~~~C~~C~~~~----~~~Cs~C~~ 32 (60)
T 2od1_A 1 GSPNSGSPNSDSSESCWNCGRKA----SETCSGCNT 32 (60)
T ss_dssp ----------CCSSCCTTTSSCC----CEECTTTSC
T ss_pred CCCcccCcCCCCCCccccCCCcc----cccCCCCCC
Confidence 56788887777788999999964 578888874
No 21
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=47.22 E-value=8.5 Score=23.98 Aligned_cols=20 Identities=35% Similarity=0.977 Sum_probs=16.4
Q ss_pred ccccCCCcccccccCcccccccc
Q 034411 18 LCVRCGRRSFHIQKSRCSACAYP 40 (95)
Q Consensus 18 lCrRCG~~syH~qK~~Ca~CGyp 40 (95)
.|..||.-.. +.+|..||-+
T Consensus 7 ~C~~Cg~YTL---k~~CP~CG~~ 26 (60)
T 2aus_D 7 KCPKCGRYTL---KETCPVCGEK 26 (60)
T ss_dssp ECTTTCCEES---SSBCTTTCSB
T ss_pred ECCCCCCEEc---cccCcCCCCc
Confidence 5899987555 8899999975
No 22
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=47.20 E-value=7.9 Score=28.82 Aligned_cols=26 Identities=27% Similarity=0.708 Sum_probs=20.2
Q ss_pred CcccccccCCCcccccc---cCccccccc
Q 034411 14 KTHTLCVRCGRRSFHIQ---KSRCSACAY 39 (95)
Q Consensus 14 ktH~lCrRCG~~syH~q---K~~Ca~CGy 39 (95)
.+|..|..||....... ...|.+||+
T Consensus 105 ~~~~fC~~CG~~~~~~~~~~~~~C~~C~~ 133 (269)
T 1vk6_A 105 RSHKYCGYCGHEMYPSKTEWAMLCSHCRE 133 (269)
T ss_dssp HTTSBCTTTCCBEEECSSSSCEEESSSSC
T ss_pred hcCCccccCCCcCccCCCceeeeCCCCCC
Confidence 35778999999886543 458999997
No 23
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=46.06 E-value=14 Score=26.45 Aligned_cols=32 Identities=16% Similarity=0.361 Sum_probs=27.6
Q ss_pred CCCCCcccccccCCCcccccccCccccccccc
Q 034411 10 KRRNKTHTLCVRCGRRSFHIQKSRCSACAYPA 41 (95)
Q Consensus 10 Kr~~ktH~lCrRCG~~syH~qK~~Ca~CGyps 41 (95)
.....-.-.|..||...|--..+.-+.||.||
T Consensus 36 ~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPS 67 (144)
T 3e0o_A 36 DHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPS 67 (144)
T ss_dssp SCCCSEEEEETTTCCEEEETTTBCCCTTSSCE
T ss_pred CcCCCEEEEeCCCCcccccCcccccCCCCCcc
Confidence 33455667899999999999999999999995
No 24
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=45.25 E-value=12 Score=26.83 Aligned_cols=28 Identities=29% Similarity=0.598 Sum_probs=24.9
Q ss_pred CcccccccCCCcccccccCccccccccc
Q 034411 14 KTHTLCVRCGRRSFHIQKSRCSACAYPA 41 (95)
Q Consensus 14 ktH~lCrRCG~~syH~qK~~Ca~CGyps 41 (95)
+-.-.|..||...|--..|.-+.||.||
T Consensus 35 ~G~Y~C~~Cg~pLF~S~~KFdSg~GWPS 62 (143)
T 2l1u_A 35 TGMYHCVCCDSPLFSSEKKYCSGTGWPS 62 (143)
T ss_dssp CEEEEESSSSCEEEEGGGBCTTTTCCSB
T ss_pred CeEEEeCCCCCeeecCcccccCCCCChh
Confidence 3445799999999999999999999995
No 25
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=45.19 E-value=8.7 Score=26.13 Aligned_cols=27 Identities=22% Similarity=0.567 Sum_probs=18.7
Q ss_pred cccccccCCCcccc-cccCccccccccc
Q 034411 15 THTLCVRCGRRSFH-IQKSRCSACAYPA 41 (95)
Q Consensus 15 tH~lCrRCG~~syH-~qK~~Ca~CGyps 41 (95)
---.|..||+.-=. .....|..||.+-
T Consensus 131 ~~y~C~~Cg~~~~~~~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 131 WRYVCIGCGRKFSTLPPGGVCPDCGSKV 158 (165)
T ss_dssp CCEEESSSCCEESSCCGGGBCTTTCCBE
T ss_pred EEEECCCCCCcccCCCCCCcCCCCCCcc
Confidence 45689999975322 2345899999863
No 26
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=45.15 E-value=13 Score=19.98 Aligned_cols=24 Identities=25% Similarity=0.671 Sum_probs=19.1
Q ss_pred cccccCCCcccccccCccccccccc
Q 034411 17 TLCVRCGRRSFHIQKSRCSACAYPA 41 (95)
Q Consensus 17 ~lCrRCG~~syH~qK~~Ca~CGyps 41 (95)
-+|..||..-|.-+ ..|..|+.|.
T Consensus 7 W~C~~C~~~Nfa~R-~~C~~C~~pk 30 (33)
T 2k1p_A 7 WQCKTCSNVNWARR-SECNMCNTPK 30 (33)
T ss_dssp CBCSSSCCBCCTTC-SBCSSSCCBT
T ss_pred cccCCCCCcccccc-ccccccCCcC
Confidence 46888998888876 7889998863
No 27
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=45.04 E-value=15 Score=26.68 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=26.2
Q ss_pred CCCcccccccCCCcccccccCccccccccc
Q 034411 12 RNKTHTLCVRCGRRSFHIQKSRCSACAYPA 41 (95)
Q Consensus 12 ~~ktH~lCrRCG~~syH~qK~~Ca~CGyps 41 (95)
..+-.-.|..||...|--..|.-+.||.||
T Consensus 46 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPS 75 (154)
T 3hcj_A 46 KLDGVYTCRLCGLPLFRSNAKFDSGTGWPS 75 (154)
T ss_dssp CSSEEEEETTTCCEEEEECTTCCCCTTSST
T ss_pred CCCEEEEccCCCCccccCcccccCCCCCcc
Confidence 344566899999999999999999999994
No 28
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=44.53 E-value=7.9 Score=23.35 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=19.8
Q ss_pred CcccccccCCCcccccccCccccccc
Q 034411 14 KTHTLCVRCGRRSFHIQKSRCSACAY 39 (95)
Q Consensus 14 ktH~lCrRCG~~syH~qK~~Ca~CGy 39 (95)
.+-+.|.-||. +++....|.+ ||
T Consensus 25 p~l~~c~~cGe--~~l~H~vc~~-G~ 47 (56)
T 3r8s_0 25 TSLSVDKTSGE--KHLRHHITAD-GY 47 (56)
T ss_dssp CCEEECTTTCC--EEETTBCCTT-SE
T ss_pred CceeECCCCCC--eecccEECCC-Ce
Confidence 45688999998 8999999998 76
No 29
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.65 E-value=13 Score=21.22 Aligned_cols=16 Identities=25% Similarity=0.574 Sum_probs=14.0
Q ss_pred cccccccCcccccccc
Q 034411 25 RSFHIQKSRCSACAYP 40 (95)
Q Consensus 25 ~syH~qK~~Ca~CGyp 40 (95)
+.||.+--+|..|+-|
T Consensus 25 ~~~H~~CF~C~~C~~~ 40 (70)
T 2d8z_A 25 QPWHKECFVCTACRKQ 40 (70)
T ss_dssp SEEETTTSBCSSSCCB
T ss_pred cccCCCCCccCCCCCc
Confidence 6899999999999875
No 30
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=43.63 E-value=10 Score=21.49 Aligned_cols=17 Identities=24% Similarity=0.784 Sum_probs=14.1
Q ss_pred cccccccCccccccccc
Q 034411 25 RSFHIQKSRCSACAYPA 41 (95)
Q Consensus 25 ~syH~qK~~Ca~CGyps 41 (95)
+.||.+=-+|..|+-|-
T Consensus 25 ~~~H~~CF~C~~C~~~L 41 (66)
T 1nyp_A 25 KQWHVEHFVCAKCEKPF 41 (66)
T ss_dssp SBEETTTCBCTTTCCBC
T ss_pred cccccCcCEECCCCCCC
Confidence 67899989999998763
No 31
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=43.57 E-value=12 Score=19.50 Aligned_cols=19 Identities=32% Similarity=0.838 Sum_probs=14.7
Q ss_pred cccccCCCcccccccCccc
Q 034411 17 TLCVRCGRRSFHIQKSRCS 35 (95)
Q Consensus 17 ~lCrRCG~~syH~qK~~Ca 35 (95)
..|.+||+..|-.++-...
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~ 22 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCL 22 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSS
T ss_pred CcCCccCCEEecceeEEEC
Confidence 4789999999988776643
No 32
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.43 E-value=12 Score=22.70 Aligned_cols=26 Identities=23% Similarity=0.787 Sum_probs=21.1
Q ss_pred ccccccCCC-----------cccccccCccccccccc
Q 034411 16 HTLCVRCGR-----------RSFHIQKSRCSACAYPA 41 (95)
Q Consensus 16 H~lCrRCG~-----------~syH~qK~~Ca~CGyps 41 (95)
-..|..|+. +.||.+--+|..|+-+-
T Consensus 25 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L 61 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTM 61 (90)
T ss_dssp CCBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBC
T ss_pred CCCCccCCCEecceEEEECCccccccCCccCCCCCCC
Confidence 356888887 67999999999998763
No 33
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=43.29 E-value=13 Score=23.30 Aligned_cols=27 Identities=22% Similarity=0.680 Sum_probs=20.5
Q ss_pred CCcccccccCCCc-ccc-cccCccccccc
Q 034411 13 NKTHTLCVRCGRR-SFH-IQKSRCSACAY 39 (95)
Q Consensus 13 ~ktH~lCrRCG~~-syH-~qK~~Ca~CGy 39 (95)
++.--+|..||.. ..| ...-.|-.||+
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSCC
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCCc
Confidence 5777899999998 223 34567999998
No 34
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=43.23 E-value=7.6 Score=27.91 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=25.7
Q ss_pred CCcccccccCCCcccccccCccccccccc
Q 034411 13 NKTHTLCVRCGRRSFHIQKSRCSACAYPA 41 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~qK~~Ca~CGyps 41 (95)
..-.-.|..||...|--..+.-+.||.||
T Consensus 40 ~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPS 68 (146)
T 3hcg_A 40 KPGIYVDVVSGEPLFSSADKYDSGCGWPS 68 (146)
T ss_dssp CSEEEEETTTCCEEEEGGGEECCSSSSCE
T ss_pred CCEEEEecCCCcccccCcccccCCCCChh
Confidence 44566899999999999999999999994
No 35
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=42.33 E-value=16 Score=26.43 Aligned_cols=29 Identities=21% Similarity=0.458 Sum_probs=25.4
Q ss_pred CCcccccccCCCcccccccCccccccccc
Q 034411 13 NKTHTLCVRCGRRSFHIQKSRCSACAYPA 41 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~qK~~Ca~CGyps 41 (95)
.+-.-.|..||...|--..+.-+.||.||
T Consensus 58 ~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPS 86 (151)
T 2k8d_A 58 DDGIYRCICCGTDLFDSETKFDSGTGWPS 86 (151)
T ss_dssp SCSEEEETTTTEEEEEGGGSCCSTTCCSE
T ss_pred CCEEEEecCCCCcccCCcccccCCCCCcc
Confidence 34455799999999999999999999995
No 36
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=42.14 E-value=12 Score=26.41 Aligned_cols=29 Identities=21% Similarity=0.582 Sum_probs=19.9
Q ss_pred cccccccCCCcccccccCccccccccccc
Q 034411 15 THTLCVRCGRRSFHIQKSRCSACAYPAAR 43 (95)
Q Consensus 15 tH~lCrRCG~~syH~qK~~Ca~CGyps~k 43 (95)
.--+|+.||-.------..|..||-|...
T Consensus 137 ~~~~C~~CG~i~~~~~p~~CP~Cg~~~~~ 165 (170)
T 3pwf_A 137 KVYICPICGYTAVDEAPEYCPVCGAPKEK 165 (170)
T ss_dssp CEEECTTTCCEEESCCCSBCTTTCCBGGG
T ss_pred CeeEeCCCCCeeCCCCCCCCCCCCCCHHH
Confidence 44569999986542223499999987543
No 37
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=41.44 E-value=10 Score=21.35 Aligned_cols=24 Identities=21% Similarity=0.747 Sum_probs=17.7
Q ss_pred ccccccCCCcc--c--ccccCccccccc
Q 034411 16 HTLCVRCGRRS--F--HIQKSRCSACAY 39 (95)
Q Consensus 16 H~lCrRCG~~s--y--H~qK~~Ca~CGy 39 (95)
...|..||... | -.+.-.|..||.
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCC
Confidence 34699999832 3 346789999998
No 38
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=39.72 E-value=20 Score=26.28 Aligned_cols=28 Identities=29% Similarity=0.587 Sum_probs=25.0
Q ss_pred CcccccccCCCcccccccCccccccccc
Q 034411 14 KTHTLCVRCGRRSFHIQKSRCSACAYPA 41 (95)
Q Consensus 14 ktH~lCrRCG~~syH~qK~~Ca~CGyps 41 (95)
+-.-.|..||...|--..|.-+.||.||
T Consensus 71 ~GiY~C~~Cg~pLF~S~~KFdSGcGWPS 98 (164)
T 3cxk_A 71 AGIYHCVVCGTALFESGAKYHSGCGWPS 98 (164)
T ss_dssp SEEEEETTTCCEEEEGGGBCCCCSSSCE
T ss_pred CeEEEccCCCccccCCchhccCCCCCcc
Confidence 4455899999999999999999999995
No 39
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.90 E-value=33 Score=20.14 Aligned_cols=28 Identities=25% Similarity=0.632 Sum_probs=22.1
Q ss_pred CCcccccccCCC-----------cccccccCcccccccc
Q 034411 13 NKTHTLCVRCGR-----------RSFHIQKSRCSACAYP 40 (95)
Q Consensus 13 ~ktH~lCrRCG~-----------~syH~qK~~Ca~CGyp 40 (95)
...-.+|..|+. +.||.+=-+|..|+-+
T Consensus 12 ~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~ 50 (79)
T 1x62_A 12 AQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTN 50 (79)
T ss_dssp CCCCCCCSSSCCCCCSSCEECSSCEECTTTTSCSSSCCC
T ss_pred CCCCCccccCCCCccCcEEEECcceeCcCcCeeCCCCCC
Confidence 345578999987 4689988899999876
No 40
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.34 E-value=39 Score=20.21 Aligned_cols=38 Identities=16% Similarity=0.478 Sum_probs=25.6
Q ss_pred CCCCCCCCCCCCcccccccCCCc------------ccccccCccccccccc
Q 034411 3 KGTGSFGKRRNKTHTLCVRCGRR------------SFHIQKSRCSACAYPA 41 (95)
Q Consensus 3 KGT~SfGKr~~ktH~lCrRCG~~------------syH~qK~~Ca~CGyps 41 (95)
.||+.+=.+- ..-.+|..|++. .||.+--+|..|+-+-
T Consensus 3 ~g~~~~~~~~-~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L 52 (80)
T 2dj7_A 3 SGSSGKPIKI-RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVIL 52 (80)
T ss_dssp CCCCCCCCCC-SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBC
T ss_pred CCcCCCCcCC-CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCc
Confidence 4555543332 245679999874 4788888999998763
No 41
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.67 E-value=17 Score=20.69 Aligned_cols=23 Identities=26% Similarity=0.765 Sum_probs=17.9
Q ss_pred ccccCCC-----------cccccccCcccccccc
Q 034411 18 LCVRCGR-----------RSFHIQKSRCSACAYP 40 (95)
Q Consensus 18 lCrRCG~-----------~syH~qK~~Ca~CGyp 40 (95)
.|..|+. +.||..--+|..|+-|
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~ 40 (69)
T 2cur_A 7 GCVKCNKAITSGGITYQDQPWHADCFVCVTCSKK 40 (69)
T ss_dssp CCSSSCCCCCTTCEEETTEEECTTTTBCTTTCCB
T ss_pred CCcccCCEeCcceEEECccccccCcCEECCCCCC
Confidence 5666665 5789998899999876
No 42
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.39 E-value=36 Score=20.44 Aligned_cols=28 Identities=25% Similarity=0.604 Sum_probs=22.3
Q ss_pred CCcccccccCCC-----------cccccccCcccccccc
Q 034411 13 NKTHTLCVRCGR-----------RSFHIQKSRCSACAYP 40 (95)
Q Consensus 13 ~ktH~lCrRCG~-----------~syH~qK~~Ca~CGyp 40 (95)
...-..|..|+. +.||.+--+|..|+-+
T Consensus 22 ~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~ 60 (89)
T 1x64_A 22 AQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLN 60 (89)
T ss_dssp CCSCCBCTTTCCBCCSCCEESSSCEECTTTCCCSSSCCC
T ss_pred CCcCCCcccCCCEecccEEEECCceECccCCEecCCCCC
Confidence 345568999987 4789999999999975
No 43
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=36.35 E-value=18 Score=21.88 Aligned_cols=29 Identities=34% Similarity=0.588 Sum_probs=20.0
Q ss_pred ccccCCCccccccc-----Ccccccccc-cccccc
Q 034411 18 LCVRCGRRSFHIQK-----SRCSACAYP-AARVRK 46 (95)
Q Consensus 18 lCrRCG~~syH~qK-----~~Ca~CGyp-s~k~R~ 46 (95)
.|-|||+.--..|- -.|.-|||. -.+.|+
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyrii~KvR~ 39 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRK 39 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECCCC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEEEEEecC
Confidence 68999987554443 579999995 345554
No 44
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=35.33 E-value=26 Score=20.78 Aligned_cols=23 Identities=13% Similarity=0.401 Sum_probs=17.1
Q ss_pred cccccCCCcc----cccccCccccccc
Q 034411 17 TLCVRCGRRS----FHIQKSRCSACAY 39 (95)
Q Consensus 17 ~lCrRCG~~s----yH~qK~~Ca~CGy 39 (95)
..|..||... +--.--.|..||.
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 3699999833 3345678999998
No 45
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=35.10 E-value=17 Score=24.89 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=20.5
Q ss_pred CCcccccccCCCcccccc----------------------cCcccccccccc
Q 034411 13 NKTHTLCVRCGRRSFHIQ----------------------KSRCSACAYPAA 42 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~q----------------------K~~Ca~CGyps~ 42 (95)
...-..|+.||...--.+ -..|..||-|..
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCcc
Confidence 356778999998732222 467999997643
No 46
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=35.04 E-value=23 Score=22.02 Aligned_cols=29 Identities=28% Similarity=0.568 Sum_probs=21.0
Q ss_pred CCCcccccccCCCccccc--ccCcccccccc
Q 034411 12 RNKTHTLCVRCGRRSFHI--QKSRCSACAYP 40 (95)
Q Consensus 12 ~~ktH~lCrRCG~~syH~--qK~~Ca~CGyp 40 (95)
....--+|-+||...--. ..-+|-.|||.
T Consensus 17 ~~~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~R 47 (63)
T 3h0g_L 17 PATMIYLCADCGARNTIQAKEVIRCRECGHR 47 (63)
T ss_dssp --CCCCBCSSSCCBCCCCSSSCCCCSSSCCC
T ss_pred CCCeEEECCCCCCeeecCCCCceECCCCCcE
Confidence 346788999999876432 35789999985
No 47
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.93 E-value=49 Score=19.26 Aligned_cols=26 Identities=19% Similarity=0.462 Sum_probs=19.0
Q ss_pred cccccccCCC-----------cccccccCcccccccc
Q 034411 15 THTLCVRCGR-----------RSFHIQKSRCSACAYP 40 (95)
Q Consensus 15 tH~lCrRCG~-----------~syH~qK~~Ca~CGyp 40 (95)
....|..|+. +.||..--+|..|+-+
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~ 50 (81)
T 1x6a_A 14 FGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVI 50 (81)
T ss_dssp SSCBCTTTCCBCCSCCBCCTTCCBCTTSCBCTTTCCB
T ss_pred cCCcCccCCCCcCceEEEECCceeccccCCccCCCCc
Confidence 3446777776 5688888888888865
No 48
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=33.25 E-value=18 Score=22.35 Aligned_cols=25 Identities=24% Similarity=0.712 Sum_probs=19.5
Q ss_pred cccccccCCCcccccccCcccccccc
Q 034411 15 THTLCVRCGRRSFHIQKSRCSACAYP 40 (95)
Q Consensus 15 tH~lCrRCG~~syH~qK~~Ca~CGyp 40 (95)
.--+|++|+-+ .|+.-..|-.|||.
T Consensus 18 ~k~ICrkC~AR-np~~A~~CRKCg~~ 42 (56)
T 2ayj_A 18 LKKVCRKCGAL-NPIRATKCRRCHST 42 (56)
T ss_dssp CCEEETTTCCE-ECTTCSSCTTTCCC
T ss_pred chhhhccccCc-CCcccccccCCCCC
Confidence 44689999876 47778889999974
No 49
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.90 E-value=35 Score=20.23 Aligned_cols=28 Identities=18% Similarity=0.611 Sum_probs=21.4
Q ss_pred cccccccCCC-----------cccccccCcccccccccc
Q 034411 15 THTLCVRCGR-----------RSFHIQKSRCSACAYPAA 42 (95)
Q Consensus 15 tH~lCrRCG~-----------~syH~qK~~Ca~CGyps~ 42 (95)
.-..|..|+. +.||..--+|..|+-|-.
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~ 52 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELT 52 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCC
T ss_pred CCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccC
Confidence 3457888876 568999999999997643
No 50
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=31.96 E-value=22 Score=23.29 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=20.4
Q ss_pred CCcccccccCCCcccccc-cC-cccccccccc
Q 034411 13 NKTHTLCVRCGRRSFHIQ-KS-RCSACAYPAA 42 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~q-K~-~Ca~CGyps~ 42 (95)
.+.-..|+.||...--.. -. .|..||-|..
T Consensus 70 ~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSKNV 101 (119)
T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSCCC
T ss_pred ccceEEcCCCCCEEeCCCCCCCcCccccCCCc
Confidence 356678999998643322 24 7999997643
No 51
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=31.09 E-value=25 Score=24.96 Aligned_cols=24 Identities=33% Similarity=0.776 Sum_probs=19.6
Q ss_pred ccccccCCCcccccccC------ccccccc
Q 034411 16 HTLCVRCGRRSFHIQKS------RCSACAY 39 (95)
Q Consensus 16 H~lCrRCG~~syH~qK~------~Ca~CGy 39 (95)
-++|.-|++.-=.+.+. .|.+||.
T Consensus 104 yVlC~~C~sPdT~L~k~~r~~~l~C~ACGa 133 (148)
T 2d74_B 104 YVICPVCGSPDTKIIKRDRFHFLKCEACGA 133 (148)
T ss_dssp HSSCSSSCCTTCCCCBSSSSBCCCCSSSCC
T ss_pred EEECCCCCCcCcEEEEeCCEEEEEecCCCC
Confidence 37899999988777765 4999997
No 52
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=30.72 E-value=31 Score=27.34 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=27.1
Q ss_pred CCCCcccccccCCCcccccccCccccccccc
Q 034411 11 RRNKTHTLCVRCGRRSFHIQKSRCSACAYPA 41 (95)
Q Consensus 11 r~~ktH~lCrRCG~~syH~qK~~Ca~CGyps 41 (95)
....-.-.|..||...|--..|.-+.||.||
T Consensus 204 ~~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPS 234 (313)
T 3e0m_A 204 TFEEGIYVDITTGEPLFFAKDKFASGCGWPS 234 (313)
T ss_dssp CCCSEEEEETTTCCEEEEGGGBCCCCSSSCE
T ss_pred CCCCeEEEecCCCccccCCCccccCCCCCcc
Confidence 3445667899999999999999999999995
No 53
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.56 E-value=13 Score=24.32 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=10.0
Q ss_pred CcccccccCCCc
Q 034411 14 KTHTLCVRCGRR 25 (95)
Q Consensus 14 ktH~lCrRCG~~ 25 (95)
--|..|..||+.
T Consensus 89 H~HliC~~Cg~v 100 (136)
T 1mzb_A 89 HDHMVCVDTGEV 100 (136)
T ss_dssp CEEEEETTTCCE
T ss_pred ceEEEECCCCCE
Confidence 468999999974
No 54
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=30.31 E-value=22 Score=26.88 Aligned_cols=39 Identities=15% Similarity=0.316 Sum_probs=27.9
Q ss_pred CCcccccccCCCc----c--cccccCcccccccc--------ccccccCCccc
Q 034411 13 NKTHTLCVRCGRR----S--FHIQKSRCSACAYP--------AARVRKYNWSV 51 (95)
Q Consensus 13 ~ktH~lCrRCG~~----s--yH~qK~~Ca~CGyp--------s~k~R~YnWs~ 51 (95)
-.....|..||+. . +-----.|..||.= .+-+|.|+...
T Consensus 18 ln~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEriID~GPEWRAFsnDD 70 (197)
T 3k1f_M 18 LNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNXX 70 (197)
T ss_dssp CCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCBCHHHHHHHHHCCC
T ss_pred cccCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCceeECCCCCcCcCCcc
Confidence 3456689999983 1 34566789999982 46688888753
No 55
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=30.19 E-value=16 Score=25.05 Aligned_cols=24 Identities=29% Similarity=0.657 Sum_probs=19.2
Q ss_pred cccccccCCCcccccccCccccccc
Q 034411 15 THTLCVRCGRRSFHIQKSRCSACAY 39 (95)
Q Consensus 15 tH~lCrRCG~~syH~qK~~Ca~CGy 39 (95)
.-..|..||...|-.+ ..|..||-
T Consensus 46 ~~~rC~~CG~~~~PPr-~~Cp~C~s 69 (145)
T 3irb_A 46 IGSKCSKCGRIFVPAR-SYCEHCFV 69 (145)
T ss_dssp EEEECTTTCCEEESCC-SEETTTTE
T ss_pred EEEEeCCCCcEEcCch-hhCcCCCC
Confidence 4467999999888776 57999994
No 56
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=29.69 E-value=16 Score=20.24 Aligned_cols=26 Identities=23% Similarity=0.584 Sum_probs=21.8
Q ss_pred CcccccccCCCcccccccCccccccccc
Q 034411 14 KTHTLCVRCGRRSFHIQKSRCSACAYPA 41 (95)
Q Consensus 14 ktH~lCrRCG~~syH~qK~~Ca~CGyps 41 (95)
..-+.|--|++.-+ |--.|..|+|..
T Consensus 12 ~~pt~C~~C~~~l~--qG~~C~~C~~~~ 37 (52)
T 1faq_A 12 LKLAFCDICQKFLL--NGFRCQTCGYKF 37 (52)
T ss_dssp SSCEECTTSSSEEC--SEEECTTTTCCB
T ss_pred CCCcCCCCcccccc--cCCEeCCCCCeE
Confidence 34688999999887 999999999853
No 57
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.42 E-value=31 Score=19.63 Aligned_cols=16 Identities=31% Similarity=0.582 Sum_probs=13.6
Q ss_pred cccccccCcccccccc
Q 034411 25 RSFHIQKSRCSACAYP 40 (95)
Q Consensus 25 ~syH~qK~~Ca~CGyp 40 (95)
+.||.+--+|..|+-|
T Consensus 25 ~~~H~~CF~C~~C~~~ 40 (70)
T 2d8x_A 25 NSWHPECFRCDLCQEV 40 (70)
T ss_dssp EEECTTTSBCSSSCCB
T ss_pred ccccccCCEeCCCCCc
Confidence 4789999999999875
No 58
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=28.70 E-value=22 Score=23.48 Aligned_cols=23 Identities=22% Similarity=0.790 Sum_probs=19.1
Q ss_pred cccccCCCccccccc-------Cccccccc
Q 034411 17 TLCVRCGRRSFHIQK-------SRCSACAY 39 (95)
Q Consensus 17 ~lCrRCG~~syH~qK-------~~Ca~CGy 39 (95)
..|..||+.-|-... -.|..|||
T Consensus 5 ~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y 34 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACRNCDY 34 (113)
T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECSSSCC
T ss_pred eeCcCCCCEeeEcccCCCCeeEEECCCCCC
Confidence 469999999887653 78999999
No 59
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=28.50 E-value=28 Score=18.50 Aligned_cols=23 Identities=26% Similarity=0.664 Sum_probs=16.3
Q ss_pred cccccCCCcccccccCcccccccc
Q 034411 17 TLCVRCGRRSFHIQKSRCSACAYP 40 (95)
Q Consensus 17 ~lCrRCG~~syH~qK~~Ca~CGyp 40 (95)
-+|.-||..-|=.+ ..|..||.|
T Consensus 6 W~C~~C~~~Nfa~r-~~C~~C~~p 28 (32)
T 2lk0_A 6 WLCNKCCLNNFRKR-LKCFRCGAD 28 (32)
T ss_dssp EECTTTCCEEETTC-CBCTTTCCB
T ss_pred CCcCcCcCCcChhc-ceecCCCCc
Confidence 35777777777555 778888876
No 60
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.42 E-value=29 Score=20.40 Aligned_cols=26 Identities=23% Similarity=0.598 Sum_probs=18.5
Q ss_pred cccccccCCC-----------cccccccCcccccccc
Q 034411 15 THTLCVRCGR-----------RSFHIQKSRCSACAYP 40 (95)
Q Consensus 15 tH~lCrRCG~-----------~syH~qK~~Ca~CGyp 40 (95)
....|..|+. +.||.+=-+|+.|+-|
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~ 50 (81)
T 2dlo_A 14 TLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRG 50 (81)
T ss_dssp SCCBCTTTCCBCCSCCEEETTEEECTTTCBCSSSCCB
T ss_pred CCCccccCCCeecceeEEECCccccHHhcCcccCCCc
Confidence 3456777776 4678887888888765
No 61
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=28.42 E-value=30 Score=22.10 Aligned_cols=22 Identities=27% Similarity=0.680 Sum_probs=12.8
Q ss_pred ccccCCCccccccc---Cccccccc
Q 034411 18 LCVRCGRRSFHIQK---SRCSACAY 39 (95)
Q Consensus 18 lCrRCG~~syH~qK---~~Ca~CGy 39 (95)
.|..||+.+.--+- ..|.+||+
T Consensus 28 ~C~fCgk~~vkR~a~GIW~C~~C~~ 52 (72)
T 3jyw_9 28 DCSFCGKKTVKRGAAGIWTCSCCKK 52 (72)
T ss_dssp CCSSCCSSCBSBCSSSCBCCSSSCC
T ss_pred cCCCCCCceeEecCCCeEECCCCCC
Confidence 57777766533221 35777765
No 62
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*
Probab=28.20 E-value=12 Score=30.42 Aligned_cols=12 Identities=33% Similarity=0.991 Sum_probs=0.0
Q ss_pred cccCcccccccc
Q 034411 29 IQKSRCSACAYP 40 (95)
Q Consensus 29 ~qK~~Ca~CGyp 40 (95)
+.+..|+.||||
T Consensus 12 LP~~nCg~CG~p 23 (445)
T 2h9a_A 12 LPKKNCKECGQP 23 (445)
T ss_dssp ------------
T ss_pred CCCCCCccCCcc
Confidence 345679999998
No 63
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.15 E-value=29 Score=20.17 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=17.8
Q ss_pred cccccCCC-----------cccccccCcccccccc
Q 034411 17 TLCVRCGR-----------RSFHIQKSRCSACAYP 40 (95)
Q Consensus 17 ~lCrRCG~-----------~syH~qK~~Ca~CGyp 40 (95)
..|..|+. ..||.+=-+|..|+-|
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~ 50 (80)
T 1x3h_A 16 PKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTS 50 (80)
T ss_dssp CBCTTTCCBCCSSCEEETTEEECTTTCBCSSSCCB
T ss_pred CccccCCCeecceeEEECCCeEecCcCChhhCCCC
Confidence 46777776 4688888888888865
No 64
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=26.79 E-value=31 Score=21.05 Aligned_cols=27 Identities=30% Similarity=0.655 Sum_probs=22.5
Q ss_pred CCcccccccCCCcccccccCcccccccc
Q 034411 13 NKTHTLCVRCGRRSFHIQKSRCSACAYP 40 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~qK~~Ca~CGyp 40 (95)
-+.-+.|--||... -.|-..|..|+|-
T Consensus 32 ~~~pt~C~~C~~~l-~~qG~kC~~C~~~ 58 (72)
T 2fnf_X 32 RGGPGWCDLCGREV-LRQALRCANCKFT 58 (72)
T ss_dssp CSSCCBCTTTSSBC-SSCCEECTTSSCE
T ss_pred CCCCcchhhhhHHH-HhCcCccCCCCCe
Confidence 45678899999998 5688899999984
No 65
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=26.76 E-value=18 Score=22.84 Aligned_cols=29 Identities=24% Similarity=0.660 Sum_probs=19.8
Q ss_pred cccccCCCcccc---cccCccccccc--cccccccC
Q 034411 17 TLCVRCGRRSFH---IQKSRCSACAY--PAARVRKY 47 (95)
Q Consensus 17 ~lCrRCG~~syH---~qK~~Ca~CGy--ps~k~R~Y 47 (95)
+.|. ||+-+|= ...+.|. ||. ...+.|.|
T Consensus 5 v~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~rif 38 (71)
T 1gh9_A 5 FRCD-CGRALYSREGAKTRKCV-CGRTVNVKDRRIF 38 (71)
T ss_dssp EEET-TSCCEEEETTCSEEEET-TTEEEECCSSSCB
T ss_pred EECC-CCCEEEEcCCCcEEECC-CCCeeeeceEEEE
Confidence 5688 9988774 3457898 997 34555554
No 66
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.69 E-value=17 Score=24.26 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=10.8
Q ss_pred CCcccccccCCCc
Q 034411 13 NKTHTLCVRCGRR 25 (95)
Q Consensus 13 ~ktH~lCrRCG~~ 25 (95)
..-|..|..||+.
T Consensus 87 ~H~HliC~~Cg~v 99 (145)
T 3eyy_A 87 HHIHLVCRDCTNV 99 (145)
T ss_dssp CSEEEEESSSSCE
T ss_pred CceEEEECCCCCE
Confidence 3479999999986
No 67
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=26.58 E-value=30 Score=24.17 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=17.7
Q ss_pred cccccccCCCcccccccC------ccccccc
Q 034411 15 THTLCVRCGRRSFHIQKS------RCSACAY 39 (95)
Q Consensus 15 tH~lCrRCG~~syH~qK~------~Ca~CGy 39 (95)
..++|.-|++.-=.+.++ .|.+||.
T Consensus 102 ~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa 132 (139)
T 3cw2_K 102 AYVECSTCKSLDTILKKEKKSWYIVCLACGA 132 (139)
T ss_dssp CCSSCCSSSSSCCCSCSSCSTTTSSCCC---
T ss_pred HeeECCCCCCcCcEEEEeCCeEEEEecCCCC
Confidence 458899999988777775 5899996
No 68
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.34 E-value=18 Score=24.03 Aligned_cols=12 Identities=33% Similarity=0.996 Sum_probs=10.2
Q ss_pred CcccccccCCCc
Q 034411 14 KTHTLCVRCGRR 25 (95)
Q Consensus 14 ktH~lCrRCG~~ 25 (95)
.-|..|..||+.
T Consensus 85 H~HliC~~Cg~v 96 (139)
T 3mwm_A 85 HHHLVCRACGKA 96 (139)
T ss_dssp CEEEEETTTCCE
T ss_pred ccEEEECCCCCE
Confidence 468999999985
No 69
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=26.29 E-value=22 Score=29.35 Aligned_cols=12 Identities=33% Similarity=0.994 Sum_probs=10.1
Q ss_pred cccCcccccccc
Q 034411 29 IQKSRCSACAYP 40 (95)
Q Consensus 29 ~qK~~Ca~CGyp 40 (95)
+.+.-|+.||||
T Consensus 12 LP~~nCg~CG~~ 23 (446)
T 4djd_C 12 LPKKNCGECGTP 23 (446)
T ss_dssp SCCCCCCTTSSS
T ss_pred CCCCCCCCCCcc
Confidence 457789999998
No 70
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.17 E-value=18 Score=24.04 Aligned_cols=12 Identities=33% Similarity=1.010 Sum_probs=10.2
Q ss_pred CcccccccCCCc
Q 034411 14 KTHTLCVRCGRR 25 (95)
Q Consensus 14 ktH~lCrRCG~~ 25 (95)
.-|.+|..||+.
T Consensus 91 H~HliC~~Cg~v 102 (145)
T 2fe3_A 91 HYHAICENCGKI 102 (145)
T ss_dssp EEEEEETTTCCE
T ss_pred cceEEECCCCCE
Confidence 468999999985
No 71
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=26.16 E-value=23 Score=24.49 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=29.8
Q ss_pred cccccccCCCcccccccCccccccccccccccCCccccccccccc-cccccccccchhhhhccCc
Q 034411 15 THTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTT-GTGRMRYLRHVPRRFKSNF 78 (95)
Q Consensus 15 tH~lCrRCG~~syH~qK~~Ca~CGyps~k~R~YnWs~Ka~rr~tt-GTGrmr~lk~v~rrfkngf 78 (95)
.-..|..||...| .-...|..||-. .+.|-. .. |+|..--.-++.+. -.||
T Consensus 46 ~~~rC~~CG~~~f-PPr~~Cp~C~s~-----~~e~v~------ls~g~GtV~S~Tvv~~~-~pgf 97 (145)
T 2gnr_A 46 IGSKCSKCGRIFV-PARSYCEHCFVK-----IENYVE------INKDEAYVDSYTIIYND-DEGN 97 (145)
T ss_dssp EEEECTTTCCEEE-SCCSEETTTTEE-----CCEEEE------CCGGGCEEEEEEEEEEC-TTSC
T ss_pred EEEEECCCCcEEe-CCCCCCCCCCCC-----ccEEEE------ccCCcEEEEEEEEEccC-CCCc
Confidence 3457999998755 455689999843 244422 23 56665555444443 3444
No 72
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=26.12 E-value=28 Score=20.31 Aligned_cols=27 Identities=30% Similarity=0.655 Sum_probs=22.5
Q ss_pred CCcccccccCCCcccccccCcccccccc
Q 034411 13 NKTHTLCVRCGRRSFHIQKSRCSACAYP 40 (95)
Q Consensus 13 ~ktH~lCrRCG~~syH~qK~~Ca~CGyp 40 (95)
-..-+.|--||+.. -.|-..|..|+|-
T Consensus 19 ~~~pt~C~~C~~~i-~kqg~kC~~C~~~ 45 (59)
T 1rfh_A 19 RGGPGWCDLCGREV-LRQALRCANCKFT 45 (59)
T ss_dssp SSCCEECTTTCSEE-CSCCEECTTTSCE
T ss_pred cCCCeEchhcchhh-hhCccEeCCCCCe
Confidence 45678899999998 5788899999984
No 73
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.87 E-value=35 Score=19.80 Aligned_cols=24 Identities=29% Similarity=0.877 Sum_probs=17.4
Q ss_pred cccccCCC-----------cccccccCcccccccc
Q 034411 17 TLCVRCGR-----------RSFHIQKSRCSACAYP 40 (95)
Q Consensus 17 ~lCrRCG~-----------~syH~qK~~Ca~CGyp 40 (95)
..|..|+. +.||..=-+|..|+-|
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~ 50 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTP 50 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTTCBCSSSCCB
T ss_pred CcCCCCCCEecCcEEEECCchhhhhhCCcccCCCc
Confidence 45667765 5678887888888765
No 74
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=25.59 E-value=20 Score=20.84 Aligned_cols=23 Identities=17% Similarity=0.589 Sum_probs=19.7
Q ss_pred ccccccCCCcccccccCcccccccc
Q 034411 16 HTLCVRCGRRSFHIQKSRCSACAYP 40 (95)
Q Consensus 16 H~lCrRCG~~syH~qK~~Ca~CGyp 40 (95)
.+.|.-|++.-| |-..|..|+|-
T Consensus 14 ~t~C~~C~k~i~--~G~kC~~Ck~~ 36 (49)
T 1kbe_A 14 SQVCNVCQKSMI--FGVKCKHCRLK 36 (49)
T ss_dssp SCCCSSSCCSSC--CEEEETTTTEE
T ss_pred CcCccccCceeE--CcCCCCCCCCc
Confidence 388999999998 66889999984
No 75
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=25.39 E-value=20 Score=23.07 Aligned_cols=24 Identities=29% Similarity=0.667 Sum_probs=17.1
Q ss_pred ccccccCCCcc-cc--cccCccccccc
Q 034411 16 HTLCVRCGRRS-FH--IQKSRCSACAY 39 (95)
Q Consensus 16 H~lCrRCG~~s-yH--~qK~~Ca~CGy 39 (95)
.-.|..||... |- .+...|..||+
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~ 53 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDY 53 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCC
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCC
Confidence 44699999843 22 45678999997
No 76
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.76 E-value=20 Score=24.10 Aligned_cols=12 Identities=33% Similarity=1.140 Sum_probs=10.2
Q ss_pred CcccccccCCCc
Q 034411 14 KTHTLCVRCGRR 25 (95)
Q Consensus 14 ktH~lCrRCG~~ 25 (95)
.-|.+|..||+.
T Consensus 97 H~HliC~~Cg~v 108 (150)
T 2xig_A 97 HDHIICLHCGKI 108 (150)
T ss_dssp CEEEEETTTCCE
T ss_pred ceEEEECCCCCE
Confidence 479999999974
No 77
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.55 E-value=27 Score=25.06 Aligned_cols=24 Identities=29% Similarity=0.812 Sum_probs=20.1
Q ss_pred ccccccCCCccccccc--C------ccccccc
Q 034411 16 HTLCVRCGRRSFHIQK--S------RCSACAY 39 (95)
Q Consensus 16 H~lCrRCG~~syH~qK--~------~Ca~CGy 39 (95)
.++|.-|++.-=.+.+ + .|.+||.
T Consensus 103 YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa 134 (157)
T 2e9h_A 103 FVLCPECENPETDLHVNPKKQTIGNSCKACGY 134 (157)
T ss_dssp TTSCTTTCCSCCEEEEETTTTEEEEECSSSCC
T ss_pred eEECCCCCCCccEEEEecCCCEEEEEccCCCC
Confidence 4799999999888885 3 4999998
No 78
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=24.39 E-value=33 Score=22.07 Aligned_cols=27 Identities=26% Similarity=0.582 Sum_probs=22.3
Q ss_pred CcccccccCCCcccccccC----cccccccc
Q 034411 14 KTHTLCVRCGRRSFHIQKS----RCSACAYP 40 (95)
Q Consensus 14 ktH~lCrRCG~~syH~qK~----~Ca~CGyp 40 (95)
...|.|.-|++..|++-+. .|..|+|.
T Consensus 33 ~~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~ 63 (84)
T 2row_A 33 HFPTNCEACMKPLWHMFKPPPALECRRCHIK 63 (84)
T ss_dssp SSCEECSSSSSEECCSSSCCCEEEESSSCCE
T ss_pred CCCcchhhcCHhhhccccCCCCCEecCCCCc
Confidence 4568999999999998554 89999874
No 79
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.37 E-value=22 Score=23.88 Aligned_cols=12 Identities=33% Similarity=1.016 Sum_probs=10.1
Q ss_pred CcccccccCCCc
Q 034411 14 KTHTLCVRCGRR 25 (95)
Q Consensus 14 ktH~lCrRCG~~ 25 (95)
--|.+|..||+.
T Consensus 88 H~HliC~~Cg~v 99 (150)
T 2w57_A 88 HDHLVCLDCGEV 99 (150)
T ss_dssp CEEEEETTTCCE
T ss_pred eeEEEECCCCCE
Confidence 468999999974
No 80
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.37 E-value=22 Score=24.39 Aligned_cols=12 Identities=33% Similarity=1.035 Sum_probs=10.3
Q ss_pred CcccccccCCCc
Q 034411 14 KTHTLCVRCGRR 25 (95)
Q Consensus 14 ktH~lCrRCG~~ 25 (95)
.-|..|..||+.
T Consensus 105 H~HliC~~CG~v 116 (162)
T 4ets_A 105 HDHMICKNCGKI 116 (162)
T ss_dssp CEEEEETTTCCE
T ss_pred ccEEEECCCCCE
Confidence 478999999985
No 81
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=23.11 E-value=40 Score=21.72 Aligned_cols=39 Identities=13% Similarity=0.410 Sum_probs=27.6
Q ss_pred CCccc-ccccCCCcccccccCccccccccccccccCCccccc
Q 034411 13 NKTHT-LCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKA 53 (95)
Q Consensus 13 ~ktH~-lCrRCG~~syH~qK~~Ca~CGyps~k~R~YnWs~Ka 53 (95)
-++.+ .|.-|=...--..+.-|.+||.+ -+++..=+..+
T Consensus 11 ~k~~iLrC~aCf~~t~~~~k~FCp~CGn~--TL~Rvsvsvd~ 50 (79)
T 2con_A 11 ARSYILRCHGCFKTTSDMNRVFCGHCGNK--TLKKVSVTIND 50 (79)
T ss_dssp CCCEEEECSSSCCEESCSSCCSCSSSCCS--CCEEEECBCCS
T ss_pred eeeeeeEecccceECCCcccccccccCcc--cceEEEEEECC
Confidence 34444 59999999888899999999986 34444434433
No 82
>1hxr_A Guanine nucleotide exchange factor MSS4; RAB GTPase, membrane trafficking, Zn binding site, metal binding protein; 1.65A {Rattus norvegicus} SCOP: b.88.1.1 PDB: 1fwq_A 2fu5_A
Probab=22.46 E-value=25 Score=23.86 Aligned_cols=18 Identities=44% Similarity=0.951 Sum_probs=14.3
Q ss_pred CCCcccccccCCCccccc
Q 034411 12 RNKTHTLCVRCGRRSFHI 29 (95)
Q Consensus 12 ~~ktH~lCrRCG~~syH~ 29 (95)
.|++.++|++|++.-+-.
T Consensus 8 ~N~~~i~C~~C~s~il~~ 25 (115)
T 1hxr_A 8 RNRKAVLCQRCGSRVLQP 25 (115)
T ss_dssp BBSSCEEETTTCCEEECT
T ss_pred cccCeEECCCCCCEEecc
Confidence 467899999999877643
No 83
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=22.32 E-value=28 Score=25.35 Aligned_cols=24 Identities=29% Similarity=0.812 Sum_probs=20.3
Q ss_pred ccccccCCCccccccc--C------ccccccc
Q 034411 16 HTLCVRCGRRSFHIQK--S------RCSACAY 39 (95)
Q Consensus 16 H~lCrRCG~~syH~qK--~------~Ca~CGy 39 (95)
.++|.-|++.-=.|.+ + .|.+||.
T Consensus 96 YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa 127 (170)
T 2g2k_A 96 FVLCPECENPETDLHVNPKKQTIGNSCKACGY 127 (170)
T ss_dssp HHSCTTTSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred eEECCCCCCCccEEEEecCCCEEEEEccccCC
Confidence 4789999999888888 3 4999998
No 84
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=22.01 E-value=45 Score=22.92 Aligned_cols=23 Identities=22% Similarity=0.769 Sum_probs=19.3
Q ss_pred cccccCCCccccccc-------Cccccccc
Q 034411 17 TLCVRCGRRSFHIQK-------SRCSACAY 39 (95)
Q Consensus 17 ~lCrRCG~~syH~qK-------~~Ca~CGy 39 (95)
-.|..||+--|=... -.|..|||
T Consensus 25 ~FCPeCgNmL~pked~~~~~l~~~CrtCgY 54 (133)
T 3qt1_I 25 RFCRDCNNMLYPREDKENNRLLFECRTCSY 54 (133)
T ss_dssp CBCTTTCCBCBCCBCTTTCCBCCBCSSSCC
T ss_pred eeCCCCCCEeeECccCCCceeEEECCCCCC
Confidence 579999999887643 78999999
No 85
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=22.00 E-value=27 Score=23.28 Aligned_cols=23 Identities=22% Similarity=0.684 Sum_probs=18.5
Q ss_pred cccccCCCccccc-------ccCccccccc
Q 034411 17 TLCVRCGRRSFHI-------QKSRCSACAY 39 (95)
Q Consensus 17 ~lCrRCG~~syH~-------qK~~Ca~CGy 39 (95)
..|..||+--|=. ..-.|..|||
T Consensus 5 ~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y 34 (122)
T 1twf_I 5 RFCRDCNNMLYPREDKENNRLLFECRTCSY 34 (122)
T ss_dssp CBCSSSCCBCEEEEETTTTEEEEECSSSSC
T ss_pred CcccccCccCcccccCcCCCCEEECCcCCC
Confidence 4799999998833 3467999999
No 86
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.38 E-value=32 Score=21.18 Aligned_cols=28 Identities=21% Similarity=0.521 Sum_probs=22.3
Q ss_pred CcccccccCCCccccc--ccCccccccccc
Q 034411 14 KTHTLCVRCGRRSFHI--QKSRCSACAYPA 41 (95)
Q Consensus 14 ktH~lCrRCG~~syH~--qK~~Ca~CGyps 41 (95)
..-+.|--|++..+.+ |--.|..|+|..
T Consensus 26 ~~pt~C~~C~~~lwGl~kqg~~C~~C~~~~ 55 (83)
T 2yuu_A 26 GQPTFCSVCKDFVWGLNKQGYKCRQCNAAI 55 (83)
T ss_dssp SSCCCCSSSCCCCCSSSCCEEEETTTCCEE
T ss_pred CCCcChhhcChhhccccccccccCCcCCee
Confidence 3457899999999865 667899999853
No 87
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.38 E-value=25 Score=22.82 Aligned_cols=15 Identities=27% Similarity=0.789 Sum_probs=11.5
Q ss_pred CcccccccCCCccccc
Q 034411 14 KTHTLCVRCGRRSFHI 29 (95)
Q Consensus 14 ktH~lCrRCG~~syH~ 29 (95)
--|.+|..||+.. ++
T Consensus 81 h~HliC~~Cg~v~-~~ 95 (131)
T 2o03_A 81 HHHLVCRSCGSTI-EV 95 (131)
T ss_dssp CEEEEETTTCCEE-EE
T ss_pred CCEEEeCCCCCEE-EE
Confidence 4789999999753 44
No 88
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.05 E-value=1.2e+02 Score=17.95 Aligned_cols=27 Identities=33% Similarity=0.737 Sum_probs=19.4
Q ss_pred CcccccccCCCcc------------cccccCcccccccc
Q 034411 14 KTHTLCVRCGRRS------------FHIQKSRCSACAYP 40 (95)
Q Consensus 14 ktH~lCrRCG~~s------------yH~qK~~Ca~CGyp 40 (95)
-+-..|.+|++.. ||..=-+|..|+-+
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~ 51 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEAT 51 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCB
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCC
Confidence 3456788888754 67777788888754
No 89
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=21.05 E-value=29 Score=24.29 Aligned_cols=24 Identities=29% Similarity=0.816 Sum_probs=19.2
Q ss_pred ccccccCCCcccccccC------ccccccc
Q 034411 16 HTLCVRCGRRSFHIQKS------RCSACAY 39 (95)
Q Consensus 16 H~lCrRCG~~syH~qK~------~Ca~CGy 39 (95)
.++|.-|++.-=.+.++ .|.+||.
T Consensus 102 yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa 131 (138)
T 1nee_A 102 FVICHECNRPDTRIIREGRISLLKCEACGA 131 (138)
T ss_dssp HHHHTCCSSCSSCCEEETTTTEEECSTTSC
T ss_pred EEECCCCCCcCcEEEEcCCeEEEEccCCCC
Confidence 47899999987777765 4899997
No 90
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=20.97 E-value=41 Score=18.32 Aligned_cols=27 Identities=26% Similarity=0.629 Sum_probs=22.1
Q ss_pred CcccccccCCCcccc--cccCcccccccc
Q 034411 14 KTHTLCVRCGRRSFH--IQKSRCSACAYP 40 (95)
Q Consensus 14 ktH~lCrRCG~~syH--~qK~~Ca~CGyp 40 (95)
..-+.|.-|++.-+- .|--.|..|+|.
T Consensus 9 ~~pt~C~~C~~~l~g~~~qg~~C~~C~~~ 37 (50)
T 1ptq_A 9 MSPTFCDHCGSLLWGLVKQGLKCEDCGMN 37 (50)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCE
T ss_pred CCCCCcCCCCceeeccCCccCEeCCCCCe
Confidence 456889999999886 477889999984
No 91
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=20.78 E-value=31 Score=22.99 Aligned_cols=22 Identities=23% Similarity=0.658 Sum_probs=14.0
Q ss_pred ccccCCCccccccc---Cccccccc
Q 034411 18 LCVRCGRRSFHIQK---SRCSACAY 39 (95)
Q Consensus 18 lCrRCG~~syH~qK---~~Ca~CGy 39 (95)
.|.-||+.+.--+- ..|.+||+
T Consensus 38 ~CpfCgk~~vkR~a~GIW~C~~Cg~ 62 (92)
T 3iz5_m 38 FCEFCGKFAVKRKAVGIWGCKDCGK 62 (92)
T ss_dssp CCTTTCSSCBEEEETTEEECSSSCC
T ss_pred cCcccCCCeeEecCcceEEcCCCCC
Confidence 58888877643221 45888876
No 92
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=20.65 E-value=46 Score=25.32 Aligned_cols=41 Identities=15% Similarity=0.267 Sum_probs=23.3
Q ss_pred CCCCCCCcccccccCCCc--ccc----cccCccccccc-c-------ccccccCCc
Q 034411 8 FGKRRNKTHTLCVRCGRR--SFH----IQKSRCSACAY-P-------AARVRKYNW 49 (95)
Q Consensus 8 fGKr~~ktH~lCrRCG~~--syH----~qK~~Ca~CGy-p-------s~k~R~YnW 49 (95)
|+..- .....|..||+. ..- ----.|..||. - .+-+|.|+-
T Consensus 14 ~~~~~-~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~EwR~F~~ 68 (345)
T 3k7a_M 14 RGPNL-NIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSN 68 (345)
T ss_dssp ---CC-CCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCCTTCCCCCC--
T ss_pred cCccc-cCCCcCcCCCCCCCceEEECCCCCEecCCCCeEcccccccCCcccccccc
Confidence 55533 346679999995 222 23569999998 2 245666653
No 93
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=20.50 E-value=51 Score=22.90 Aligned_cols=71 Identities=20% Similarity=0.173 Sum_probs=40.9
Q ss_pred CCCCCCCCCCcccccccCCCcccccccC-----cccccccc---ccccccCC----ccccccccccccccccccccchhh
Q 034411 5 TGSFGKRRNKTHTLCVRCGRRSFHIQKS-----RCSACAYP---AARVRKYN----WSVKAIRRKTTGTGRMRYLRHVPR 72 (95)
Q Consensus 5 T~SfGKr~~ktH~lCrRCG~~syH~qK~-----~Ca~CGyp---s~k~R~Yn----Ws~Ka~rr~ttGTGrmr~lk~v~r 72 (95)
|-|.-.+..+|-. |+-.||..|+ .|+.||-+ -+..|.+. ...|.+++-.--.|=..-=+-|..
T Consensus 15 TrSnk~r~vkTPG-----Grlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~e~~~~rlsK~~KtvsRaYGG~lC~~CVr~ 89 (119)
T 3iz5_i 15 TKSNQTRVVKTPG-----GKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPTEYKRPRLSRNRRTVNRPYGGVLSGPAVRE 89 (119)
T ss_dssp SSSCSSBCCCCSS-----CCCCBCCCSCCSSCCCSTTSSCCSSSCCSSCSSTTCCCCCCSCCCCCBCCSCCCCHHHHHHH
T ss_pred CCCCeeEEEECCC-----CCEEEEEeccCCCCCCCCCCCCccCCccCCCchhhhhhhccccCCCcccCCCccchHHHHHH
Confidence 3444444444443 7888888765 49999874 23444333 334444444445665555666777
Q ss_pred hhccCcCc
Q 034411 73 RFKSNFRE 80 (95)
Q Consensus 73 rfkngfre 80 (95)
|+...|-.
T Consensus 90 rI~rAFLi 97 (119)
T 3iz5_i 90 RIIRAFLV 97 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777743
No 94
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=20.50 E-value=48 Score=22.58 Aligned_cols=24 Identities=33% Similarity=0.736 Sum_probs=16.4
Q ss_pred cccccccCCCcccc---cccCccccccc
Q 034411 15 THTLCVRCGRRSFH---IQKSRCSACAY 39 (95)
Q Consensus 15 tH~lCrRCG~~syH---~qK~~Ca~CGy 39 (95)
.-..|+.||-. |- .....|..|+-
T Consensus 66 ~p~~C~~CG~~-F~~~~~kPsrCP~CkS 92 (105)
T 2gmg_A 66 KPAQCRKCGFV-FKAEINIPSRCPKCKS 92 (105)
T ss_dssp CCCBBTTTCCB-CCCCSSCCSSCSSSCC
T ss_pred ECcChhhCcCe-ecccCCCCCCCcCCCC
Confidence 34579999988 52 13378888873
No 95
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=20.41 E-value=34 Score=22.90 Aligned_cols=24 Identities=25% Similarity=0.772 Sum_probs=15.4
Q ss_pred ccccccCCCc-------ccccccC-------ccccccc
Q 034411 16 HTLCVRCGRR-------SFHIQKS-------RCSACAY 39 (95)
Q Consensus 16 H~lCrRCG~~-------syH~qK~-------~Ca~CGy 39 (95)
.++|..||.. ...++.+ +|..||+
T Consensus 65 R~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~ 102 (120)
T 1x0t_A 65 RRYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGY 102 (120)
T ss_dssp TSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCC
T ss_pred HHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCC
Confidence 3588888872 2334444 6888886
No 96
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=20.23 E-value=49 Score=23.06 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=32.1
Q ss_pred CCcccccccC-----cccccccc-----ccccccCCccccccccccccccccccccchhhhhccCc
Q 034411 23 GRRSFHIQKS-----RCSACAYP-----AARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNF 78 (95)
Q Consensus 23 G~~syH~qK~-----~Ca~CGyp-----s~k~R~YnWs~Ka~rr~ttGTGrmr~lk~v~rrfkngf 78 (95)
|+-.||..|+ .|+.||-+ +-+...|....|.+++-.--.|=..-=+-|..|+...|
T Consensus 28 GrlV~~y~KK~~~~pkCg~Cg~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr~RI~rAF 93 (121)
T 3u5e_g 28 GILRAQHVKKLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERIIRAF 93 (121)
T ss_dssp SCEEECCBCCCCCCCBCTTTCCBCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHHHHHHHHHHH
T ss_pred CceEEEEeccCCCCCCCCCCCCccCCccCCcHHHHHhcccCCCCcccCCcccchHHHHHHHHHHHH
Confidence 6777887765 49999873 33333444444444444445555555555666655555
No 97
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=20.22 E-value=32 Score=23.00 Aligned_cols=22 Identities=27% Similarity=0.680 Sum_probs=13.2
Q ss_pred ccccCCCccccccc---Cccccccc
Q 034411 18 LCVRCGRRSFHIQK---SRCSACAY 39 (95)
Q Consensus 18 lCrRCG~~syH~qK---~~Ca~CGy 39 (95)
.|.-||+.+.--+- ..|.+||+
T Consensus 38 ~CpfCgk~~vkR~a~GIW~C~~C~~ 62 (92)
T 3izc_m 38 DCSFCGKKTVKRGAAGIWTCSCCKK 62 (92)
T ss_dssp CCSSSCSSCCEEEETTEEECTTTCC
T ss_pred cCCCCCCceeeecccceEEcCCCCC
Confidence 57777776533221 45777775
Done!