Query 034412
Match_columns 95
No_of_seqs 101 out of 1004
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 03:29:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034412.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034412hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h7i_A Ribonuclease H, RNAse H 100.0 1.4E-34 4.9E-39 220.9 4.1 89 1-89 76-174 (305)
2 1exn_A 5'-exonuclease, 5'-nucl 100.0 2E-30 6.9E-35 196.6 4.3 88 1-88 71-169 (290)
3 1bgx_T TAQ DNA polymerase; DNA 99.9 3.9E-26 1.3E-30 191.6 2.9 87 1-87 71-158 (832)
4 1a76_A Flap endonuclease-1 pro 99.8 2.4E-20 8.2E-25 141.7 5.2 81 1-86 84-188 (326)
5 2izo_A FEN1, flap structure-sp 99.8 5.2E-20 1.8E-24 141.1 5.2 81 1-86 81-185 (346)
6 1ul1_X Flap endonuclease-1; pr 99.7 2.5E-18 8.6E-23 133.3 4.6 81 1-86 89-193 (379)
7 3q8k_A Flap endonuclease 1; he 99.7 3.8E-18 1.3E-22 131.1 3.8 77 1-82 89-189 (341)
8 3ory_A Flap endonuclease 1; hy 99.7 1.2E-18 4.1E-23 135.0 1.1 79 1-84 98-200 (363)
9 1b43_A Protein (FEN-1); nuclea 99.7 3.4E-17 1.2E-21 124.9 3.5 81 1-86 84-188 (340)
10 1rxw_A Flap structure-specific 99.6 1.5E-17 5.2E-22 126.7 0.9 77 1-82 84-183 (336)
11 3qe9_Y Exonuclease 1; exonucle 99.3 1.1E-12 3.7E-17 101.2 5.8 72 7-83 103-183 (352)
12 2qip_A Protein of unknown func 92.9 0.18 6.1E-06 34.0 5.0 52 28-79 65-126 (165)
13 3eef_A N-carbamoylsarcosine am 90.7 0.32 1.1E-05 33.0 4.3 43 28-70 100-142 (182)
14 3hu5_A Isochorismatase family 90.1 0.38 1.3E-05 33.4 4.3 43 28-70 116-158 (204)
15 1j2r_A Hypothetical isochorism 89.9 0.41 1.4E-05 32.8 4.3 43 28-70 122-164 (199)
16 1im5_A 180AA long hypothetical 89.8 0.42 1.5E-05 32.2 4.3 43 28-70 110-152 (180)
17 3hb7_A Isochorismatase hydrola 89.6 0.44 1.5E-05 33.1 4.3 43 28-70 110-152 (204)
18 1nf9_A Phenazine biosynthesis 89.3 0.48 1.6E-05 32.7 4.3 43 28-70 132-174 (207)
19 3irv_A Cysteine hydrolase; str 89.2 0.47 1.6E-05 33.7 4.3 43 28-70 129-171 (233)
20 3txy_A Isochorismatase family 88.8 0.54 1.8E-05 32.5 4.3 43 28-70 116-158 (199)
21 3gbc_A Pyrazinamidase/nicotina 88.3 0.62 2.1E-05 31.9 4.3 43 28-70 115-157 (186)
22 3zvk_A VAPC2, toxin of toxin-a 88.2 0.63 2.2E-05 29.3 4.0 34 48-88 98-133 (134)
23 3mcw_A Putative hydrolase; iso 87.9 0.52 1.8E-05 32.6 3.7 43 28-70 103-145 (198)
24 3o94_A Nicotinamidase; hydrola 87.8 0.67 2.3E-05 32.7 4.3 43 28-70 133-175 (211)
25 4h17_A Hydrolase, isochorismat 87.7 0.54 1.9E-05 32.5 3.7 43 28-70 113-155 (197)
26 3tg2_A Vibriobactin-specific i 87.6 0.54 1.8E-05 33.4 3.7 43 28-70 128-170 (223)
27 3oqp_A Putative isochorismatas 87.3 0.68 2.3E-05 32.5 4.1 43 28-70 99-141 (211)
28 3lqy_A Putative isochorismatas 87.3 0.54 1.8E-05 32.2 3.5 43 28-70 103-145 (190)
29 2wt9_A Nicotinamidase; hydrola 87.0 0.78 2.7E-05 32.5 4.3 42 29-70 158-199 (235)
30 2a67_A Isochorismatase family 87.0 0.54 1.8E-05 31.5 3.3 43 28-70 91-133 (167)
31 2fq1_A Isochorismatase; ENTB, 86.3 0.87 3E-05 33.0 4.3 43 28-70 135-177 (287)
32 3kl2_A Putative isochorismatas 86.1 0.72 2.5E-05 32.6 3.7 43 28-70 141-183 (226)
33 3v8e_A Nicotinamidase; hydrola 86.1 0.94 3.2E-05 31.8 4.3 42 29-70 145-186 (216)
34 3r2j_A Alpha/beta-hydrolase-li 86.1 0.8 2.7E-05 32.6 4.0 43 28-70 147-189 (227)
35 3ot4_A Putative isochorismatas 86.0 0.77 2.6E-05 32.9 3.8 43 28-70 149-191 (236)
36 1nba_A N-carbamoylsarcosine am 85.1 0.83 2.8E-05 33.2 3.7 43 28-70 154-196 (264)
37 1yac_A Ycacgp, YCAC gene produ 84.7 0.66 2.2E-05 32.3 2.9 44 27-70 94-137 (208)
38 1o4w_A PIN (PILT N-terminus) d 84.3 0.32 1.1E-05 31.9 1.1 39 44-89 97-137 (147)
39 1yzv_A Hypothetical protein; s 83.1 0.67 2.3E-05 32.4 2.4 43 28-70 100-142 (204)
40 1v96_A Hypothetical protein PH 82.0 0.55 1.9E-05 30.1 1.5 35 48-87 97-133 (149)
41 2h1c_A Trafficking protein B; 80.9 0.54 1.8E-05 29.3 1.1 33 48-88 103-137 (139)
42 3iwt_A 178AA long hypothetical 79.3 5.1 0.00018 26.8 5.8 49 27-75 43-98 (178)
43 1x9g_A Putative MAR1; structur 76.3 1.7 5.7E-05 30.2 2.6 41 28-70 99-139 (200)
44 1mkz_A Molybdenum cofactor bio 72.5 10 0.00035 25.5 5.8 54 26-79 30-92 (172)
45 4az3_B Lysosomal protective pr 70.0 2.1 7.3E-05 28.4 1.8 19 57-75 57-75 (155)
46 3i8o_A KH domain-containing pr 69.6 7.7 0.00026 26.1 4.6 42 46-92 92-135 (142)
47 2pjk_A 178AA long hypothetical 69.5 12 0.00043 25.3 5.8 55 26-80 42-105 (178)
48 3p45_A Caspase-6; protease, hu 66.1 16 0.00053 25.3 5.7 34 26-59 71-104 (179)
49 3tnd_A TRNA(FMet)-specific end 65.8 3 0.0001 26.0 1.8 31 48-85 97-129 (132)
50 1y5e_A Molybdenum cofactor bio 65.7 13 0.00046 24.7 5.2 54 26-79 33-95 (169)
51 1gxs_B P-(S)-hydroxymandelonit 63.2 4.2 0.00014 27.1 2.2 15 61-75 64-78 (158)
52 1whs_B Serine carboxypeptidase 61.4 4.7 0.00016 26.7 2.2 15 61-75 62-76 (153)
53 2is8_A Molybdopterin biosynthe 61.2 16 0.00056 24.2 5.0 54 27-80 24-86 (164)
54 2b34_A F35G2.2, MAR1 ribonucle 60.0 6.7 0.00023 26.9 2.9 40 29-70 94-133 (199)
55 2ql9_A Caspase-7; cysteine pro 59.0 17 0.00059 24.9 4.9 35 26-60 71-105 (173)
56 1qtn_A Caspase-8; apoptosis, d 58.9 26 0.00087 23.6 5.7 34 26-59 57-90 (164)
57 3kbq_A Protein TA0487; structu 57.2 29 0.00099 23.6 5.7 52 26-79 25-85 (172)
58 2bgw_A XPF endonuclease; hydro 56.4 11 0.00037 26.0 3.5 50 29-78 72-130 (219)
59 1pyo_A Caspase-2; apoptosis, c 54.7 18 0.00063 24.5 4.4 35 26-60 60-94 (167)
60 3dbo_B Uncharacterized protein 54.0 21 0.00071 23.3 4.4 27 47-78 113-140 (150)
61 3mfq_A TROA, high-affinity zin 52.2 28 0.00097 25.0 5.3 48 24-71 199-246 (282)
62 1nw9_B Caspase 9, apoptosis-re 51.3 32 0.0011 24.7 5.5 35 26-60 48-82 (277)
63 2dko_A Caspase-3; low barrier 51.3 32 0.0011 22.7 5.0 35 26-60 43-77 (146)
64 1x52_A Pelota homolog, CGI-17; 51.1 9.7 0.00033 24.7 2.4 30 47-77 72-103 (124)
65 1jlj_A Gephyrin; globular alph 50.7 39 0.0013 23.0 5.6 54 26-79 36-101 (189)
66 1w8i_A Putative VAPC ribonucle 50.6 12 0.00042 24.0 2.8 24 48-76 102-126 (156)
67 3pzy_A MOG; ssgcid, seattle st 49.2 25 0.00086 23.4 4.3 52 27-80 30-90 (164)
68 3od5_A Caspase-6; caspase doma 49.1 29 0.00098 25.2 4.9 34 26-59 48-81 (278)
69 1m72_A Caspase-1; caspase, cys 48.8 30 0.001 25.0 4.9 35 26-60 58-92 (272)
70 3h11_B Caspase-8; cell death, 48.4 34 0.0011 24.7 5.2 35 26-60 51-85 (271)
71 2dok_A Telomerase-binding prot 48.0 3.7 0.00013 28.0 -0.1 42 45-86 116-175 (186)
72 2jyc_A Uncharacterized protein 46.4 62 0.0021 21.5 6.0 52 18-69 100-158 (160)
73 2g40_A Conserved hypothetical 46.0 52 0.0018 23.1 5.8 43 25-72 56-98 (224)
74 3fs2_A 2-dehydro-3-deoxyphosph 45.7 15 0.00052 27.5 3.0 34 12-45 83-120 (298)
75 1uuy_A CNX1, molybdopterin bio 45.6 57 0.0019 21.4 5.7 53 27-79 28-94 (167)
76 2j32_A Caspase-3; Pro-caspase3 45.5 37 0.0012 24.1 4.9 36 26-61 43-78 (250)
77 3sjr_A Uncharacterized protein 45.0 19 0.00065 25.1 3.2 49 5-57 102-163 (175)
78 4ehd_A Caspase-3; caspase, apo 44.9 37 0.0013 24.7 4.9 35 26-60 71-105 (277)
79 3v32_B Ribonuclease ZC3H12A; r 44.5 38 0.0013 23.6 4.7 36 33-73 91-134 (185)
80 3bcz_A Protein MEMO1; alpha/be 43.9 29 0.001 25.2 4.3 50 22-72 129-185 (293)
81 1di6_A MOGA, molybdenum cofact 43.5 39 0.0013 23.3 4.7 49 27-75 26-83 (195)
82 3sir_A Caspase; hydrolase; 2.6 43.4 33 0.0011 24.5 4.5 35 26-60 46-80 (259)
83 2eee_A Uncharacterized protein 43.1 66 0.0023 20.9 6.5 52 18-69 89-147 (149)
84 3ix7_A Uncharacterized protein 42.8 29 0.00097 22.9 3.7 58 25-87 61-122 (134)
85 2pbq_A Molybdenum cofactor bio 42.4 59 0.002 21.7 5.4 52 27-79 28-91 (178)
86 3h11_A CAsp8 and FADD-like apo 41.3 26 0.00089 25.5 3.6 34 27-60 57-90 (272)
87 2fi0_A Conserved domain protei 41.2 9.9 0.00034 22.6 1.1 44 20-67 16-78 (81)
88 2fp3_A Caspase NC; apoptosis, 40.7 37 0.0013 25.1 4.4 33 26-58 86-118 (316)
89 3sz8_A 2-dehydro-3-deoxyphosph 40.3 31 0.001 25.6 3.9 34 12-45 62-99 (285)
90 3rfq_A Pterin-4-alpha-carbinol 40.3 71 0.0024 21.8 5.6 54 26-80 51-113 (185)
91 2h54_A Caspase-1; allosteric s 39.3 81 0.0028 21.4 5.7 34 26-59 67-100 (178)
92 2h2m_A Protein MURR1, COMM dom 39.2 3.4 0.00012 26.9 -1.3 19 17-35 43-61 (108)
93 2w5v_A Alkaline phosphatase; p 38.5 19 0.00064 26.6 2.5 27 47-73 276-302 (375)
94 3tml_A 2-dehydro-3-deoxyphosph 38.0 25 0.00087 26.0 3.1 42 13-54 60-106 (288)
95 2nn3_C Caspase-1; cysteine pro 37.3 38 0.0013 25.1 4.1 34 26-59 86-119 (310)
96 3l18_A Intracellular protease 36.6 40 0.0014 21.5 3.7 38 37-75 4-41 (168)
97 3kzs_A Glycosyl hydrolase fami 35.9 93 0.0032 24.4 6.2 55 21-75 104-170 (463)
98 2g2c_A Putative molybdenum cof 35.7 62 0.0021 21.3 4.6 53 27-80 28-93 (167)
99 1ivy_A Human protective protei 35.5 17 0.00057 28.3 1.9 13 63-75 361-373 (452)
100 3h87_A Putative uncharacterize 34.6 21 0.00071 23.7 2.0 27 47-78 112-139 (156)
101 2yz2_A Putative ABC transporte 34.4 72 0.0025 22.4 5.0 39 47-86 173-212 (266)
102 1zrr_A E-2/E-2' protein; nicke 34.1 23 0.00077 24.3 2.2 64 11-74 6-83 (179)
103 3ewn_A THIJ/PFPI family protei 33.6 46 0.0016 23.6 3.9 39 37-75 25-63 (253)
104 2l8b_A Protein TRAI, DNA helic 33.6 42 0.0015 23.6 3.6 57 23-79 37-97 (189)
105 1cpy_A Serine carboxypeptidase 33.4 17 0.00057 28.1 1.6 15 61-75 325-339 (421)
106 2fe1_A Conserved hypothetical 33.0 17 0.00058 23.4 1.4 14 66-79 137-151 (156)
107 1ac5_A KEX1(delta)P; carboxype 32.9 16 0.00055 28.6 1.4 15 61-75 370-384 (483)
108 2lci_A Protein OR36; structura 32.8 84 0.0029 20.2 4.6 52 27-78 65-117 (134)
109 1vlj_A NADH-dependent butanol 32.6 1E+02 0.0035 23.1 5.8 44 25-68 60-106 (407)
110 4hcj_A THIJ/PFPI domain protei 32.4 27 0.00092 23.4 2.3 35 40-75 13-47 (177)
111 1hjs_A Beta-1,4-galactanase; 4 32.2 76 0.0026 23.3 5.0 40 30-69 33-79 (332)
112 2wte_A CSA3; antiviral protein 31.5 1.4E+02 0.0047 21.1 6.5 53 20-72 47-103 (244)
113 3e4c_A Caspase-1; zymogen, inf 31.3 64 0.0022 23.7 4.4 34 26-59 84-117 (302)
114 3sop_A Neuronal-specific septi 31.2 75 0.0026 22.4 4.7 59 18-76 154-212 (270)
115 1g6h_A High-affinity branched- 30.9 92 0.0031 21.7 5.1 39 47-86 188-227 (257)
116 2aam_A Hypothetical protein TM 30.6 37 0.0013 25.2 3.0 50 27-77 231-288 (309)
117 3g8r_A Probable spore coat pol 30.5 1E+02 0.0034 23.4 5.5 52 24-75 78-147 (350)
118 2qkf_A 3-deoxy-D-manno-octulos 29.9 77 0.0026 23.0 4.6 33 22-54 71-104 (280)
119 3ehd_A Uncharacterized conserv 29.9 1.3E+02 0.0043 20.2 6.9 49 24-72 58-106 (162)
120 1f2t_B RAD50 ABC-ATPase; DNA d 29.8 73 0.0025 20.6 4.1 36 50-87 101-137 (148)
121 2k5e_A Uncharacterized protein 29.4 61 0.0021 18.8 3.3 42 19-60 11-66 (73)
122 2qzu_A Putative sulfatase YIDJ 29.3 44 0.0015 25.3 3.3 29 47-75 285-316 (491)
123 2gk4_A Conserved hypothetical 29.1 92 0.0032 22.1 4.8 37 51-87 31-68 (232)
124 2vrn_A Protease I, DR1199; cys 29.0 77 0.0026 20.6 4.2 38 37-75 11-48 (190)
125 4fdi_A N-acetylgalactosamine-6 29.0 36 0.0012 26.0 2.8 29 47-75 234-265 (502)
126 2d00_A V-type ATP synthase sub 29.0 1.1E+02 0.0037 19.1 5.3 38 33-72 18-55 (109)
127 3gl9_A Response regulator; bet 28.8 54 0.0018 19.1 3.1 32 44-75 57-88 (122)
128 4e08_A DJ-1 beta; flavodoxin-l 28.4 80 0.0027 20.6 4.2 35 38-73 8-42 (190)
129 2ab0_A YAJL; DJ-1/THIJ superfa 28.3 84 0.0029 21.0 4.3 36 38-74 5-40 (205)
130 2gru_A 2-deoxy-scyllo-inosose 28.1 55 0.0019 24.3 3.6 33 25-57 287-319 (368)
131 1r9j_A Transketolase; domains, 28.1 1.1E+02 0.0039 24.8 5.7 48 28-75 202-252 (673)
132 2j07_A Deoxyribodipyrimidine p 28.0 1.5E+02 0.0051 22.4 6.1 48 22-73 50-97 (420)
133 1f1j_A Caspase-7 protease; cas 27.9 63 0.0022 23.8 3.9 34 26-59 96-129 (305)
134 3f5d_A Protein YDEA; unknow pr 27.9 32 0.0011 23.5 2.1 36 38-74 6-42 (206)
135 2r8o_A Transketolase 1, TK 1; 27.8 1E+02 0.0034 25.0 5.3 47 29-75 201-249 (669)
136 3vue_A GBSS-I, granule-bound s 27.7 36 0.0012 26.5 2.6 22 50-71 30-51 (536)
137 3t6k_A Response regulator rece 27.2 78 0.0027 18.8 3.7 32 44-75 59-90 (136)
138 3lxq_A Uncharacterized protein 27.1 34 0.0012 25.6 2.3 29 47-75 277-308 (450)
139 3rim_A Transketolase, TK; TPP, 27.0 95 0.0033 25.6 5.1 40 29-68 223-263 (700)
140 3gfo_A Cobalt import ATP-bindi 27.0 89 0.003 22.3 4.5 40 47-86 178-218 (275)
141 1oi4_A Hypothetical protein YH 26.9 81 0.0028 20.8 4.0 37 37-74 25-61 (193)
142 1hdh_A Arylsulfatase; hydrolas 26.6 42 0.0014 25.7 2.8 29 47-75 289-320 (536)
143 3nkq_A Ectonucleotide pyrophos 26.6 62 0.0021 27.1 4.0 33 47-79 295-331 (831)
144 2e0i_A 432AA long hypothetical 26.4 91 0.0031 24.0 4.7 46 22-73 54-99 (440)
145 3l3b_A ES1 family protein; ssg 26.3 80 0.0027 22.2 4.1 37 38-75 26-67 (242)
146 3m49_A Transketolase; alpha-be 26.3 1E+02 0.0034 25.4 5.1 47 29-75 227-275 (690)
147 2wqp_A Polysialic acid capsule 26.3 1.7E+02 0.0056 22.2 6.0 53 23-75 90-160 (349)
148 1u3d_A Cryptochrome 1 apoprote 26.2 1.9E+02 0.0066 22.3 6.6 48 22-72 63-110 (509)
149 3ot9_A Phosphopentomutase; alk 26.1 74 0.0025 24.6 4.1 56 17-78 112-167 (399)
150 3ot1_A 4-methyl-5(B-hydroxyeth 25.8 88 0.003 20.9 4.1 35 38-73 12-46 (208)
151 1z5z_A Helicase of the SNF2/RA 25.7 1.6E+02 0.0054 20.7 5.6 50 24-73 123-174 (271)
152 1np7_A DNA photolyase; protein 25.5 1.4E+02 0.005 22.9 5.7 45 22-70 63-107 (489)
153 3b5q_A Putative sulfatase YIDJ 25.4 43 0.0015 25.5 2.6 29 47-75 256-287 (482)
154 2xry_A Deoxyribodipyrimidine p 25.4 2E+02 0.0067 22.0 6.4 49 22-74 90-138 (482)
155 1jke_A O145, D-Tyr-trnaTyr dea 25.3 49 0.0017 22.3 2.6 34 6-39 80-119 (145)
156 1auk_A Arylsulfatase A; cerebr 25.3 46 0.0016 25.4 2.8 29 47-75 235-266 (489)
157 1wcw_A Uroporphyrinogen III sy 25.3 1.6E+02 0.0056 19.9 5.6 46 27-72 144-192 (261)
158 3d8t_A Uroporphyrinogen-III sy 25.3 1.8E+02 0.006 20.3 5.9 47 27-73 169-218 (286)
159 3okf_A 3-dehydroquinate syntha 25.3 89 0.003 23.8 4.4 34 26-59 318-351 (390)
160 3ir9_A Peptide chain release f 25.2 33 0.0011 23.2 1.7 32 48-79 118-151 (166)
161 3h1g_A Chemotaxis protein CHEY 25.2 65 0.0022 18.8 3.0 13 63-75 81-93 (129)
162 2ygr_A Uvrabc system protein A 25.1 51 0.0017 28.5 3.2 39 47-87 558-597 (993)
163 4b4k_A N5-carboxyaminoimidazol 24.9 1.8E+02 0.0061 20.3 6.4 47 24-70 36-84 (181)
164 1itz_A Transketolase; calvin c 24.8 1.4E+02 0.0048 24.2 5.7 47 29-75 214-263 (675)
165 3ug7_A Arsenical pump-driving 24.7 61 0.0021 23.7 3.3 30 44-73 35-64 (349)
166 1o60_A 2-dehydro-3-deoxyphosph 24.4 59 0.002 23.9 3.1 23 22-44 74-96 (292)
167 1fsu_A N-acetylgalactosamine-4 24.4 49 0.0017 25.1 2.8 29 47-75 231-262 (492)
168 3heb_A Response regulator rece 24.4 84 0.0029 18.9 3.5 32 44-75 70-101 (152)
169 3nhm_A Response regulator; pro 24.3 79 0.0027 18.3 3.3 32 44-75 58-89 (133)
170 3kom_A Transketolase; rossmann 24.3 1.2E+02 0.0042 24.6 5.3 47 29-75 203-251 (663)
171 3zq6_A Putative arsenical pump 24.1 66 0.0023 23.1 3.3 29 45-73 24-52 (324)
172 3j15_A Protein pelota; ribosom 24.0 42 0.0014 25.2 2.3 35 43-77 303-342 (357)
173 3r8n_K 30S ribosomal protein S 23.9 1.4E+02 0.005 19.0 4.6 57 10-70 39-99 (117)
174 3ed4_A Arylsulfatase; structur 23.7 52 0.0018 24.8 2.8 28 47-74 276-306 (502)
175 2vqr_A Putative sulfatase; pho 23.7 51 0.0018 25.3 2.8 29 47-75 325-356 (543)
176 2j4d_A Cryptochrome 3, cryptoc 23.5 1.7E+02 0.0057 22.9 5.8 47 22-72 98-144 (525)
177 3mos_A Transketolase, TK; thia 23.2 1.1E+02 0.0038 24.5 4.7 46 26-74 197-243 (616)
178 1owl_A Photolyase, deoxyribodi 23.1 1.6E+02 0.0056 22.6 5.6 48 22-73 55-102 (484)
179 3i42_A Response regulator rece 23.0 70 0.0024 18.4 2.8 32 44-75 58-89 (127)
180 1vli_A Spore coat polysacchari 23.0 1.3E+02 0.0046 23.1 5.0 52 24-75 101-170 (385)
181 2woo_A ATPase GET3; tail-ancho 22.9 68 0.0023 23.2 3.2 36 38-73 21-57 (329)
182 3noq_A THIJ/PFPI family protei 22.9 72 0.0025 22.0 3.2 37 38-75 8-45 (231)
183 3fro_A GLGA glycogen synthase; 22.7 1.4E+02 0.0048 21.0 4.8 28 48-75 20-47 (439)
184 1i3c_A Response regulator RCP1 22.5 86 0.0029 18.8 3.3 32 44-75 72-103 (149)
185 1aba_A Glutaredoxin; electron 22.3 1.1E+02 0.0039 17.1 5.5 43 27-69 18-70 (87)
186 3glc_A Aldolase LSRF; TIM barr 22.0 2.4E+02 0.0081 20.6 6.3 64 22-85 156-227 (295)
187 3l84_A Transketolase; TKT, str 22.0 1.6E+02 0.0054 23.9 5.5 46 29-75 198-244 (632)
188 1dt9_A ERF1, protein (eukaryot 22.0 44 0.0015 25.6 2.1 34 46-79 369-404 (437)
189 3gt7_A Sensor protein; structu 22.0 93 0.0032 18.9 3.4 31 45-75 63-93 (154)
190 2jba_A Phosphate regulon trans 22.0 52 0.0018 18.9 2.0 32 44-75 57-88 (127)
191 2nwr_A 2-dehydro-3-deoxyphosph 21.8 75 0.0026 23.0 3.2 33 12-44 46-82 (267)
192 1gpu_A Transketolase; transfer 21.7 1.4E+02 0.0048 24.2 5.1 47 29-75 203-252 (680)
193 1k68_A Phytochrome response re 21.6 72 0.0025 18.4 2.7 32 44-75 66-97 (140)
194 2w5q_A Processed glycerol phos 21.5 68 0.0023 23.9 3.0 28 47-74 230-260 (424)
195 2e6k_A Transketolase; structur 21.4 2E+02 0.007 23.1 6.0 46 29-75 205-252 (651)
196 3obw_A Protein pelota homolog; 21.2 79 0.0027 23.9 3.4 29 49-77 319-349 (364)
197 1vhq_A Enhancing lycopene bios 21.2 1.2E+02 0.004 20.7 4.0 37 38-75 9-50 (232)
198 3ilh_A Two component response 21.2 1E+02 0.0036 17.9 3.4 32 44-75 71-104 (146)
199 2rk3_A Protein DJ-1; parkinson 20.9 1.5E+02 0.0051 19.4 4.4 36 38-74 6-41 (197)
200 2zay_A Response regulator rece 20.8 88 0.003 18.5 3.0 32 44-75 63-94 (147)
201 3sxu_A DNA polymerase III subu 20.8 33 0.0011 22.8 1.0 30 50-79 26-56 (150)
202 1p49_A Steryl-sulfatase; stero 20.5 65 0.0022 25.0 2.8 29 47-75 293-324 (562)
203 2woj_A ATPase GET3; tail-ancho 20.4 79 0.0027 23.3 3.2 31 43-73 26-58 (354)
204 3fy4_A 6-4 photolyase; DNA rep 20.2 1.4E+02 0.0047 23.7 4.7 47 22-72 66-112 (537)
205 1req_B Methylmalonyl-COA mutas 20.1 1.1E+02 0.0038 25.1 4.2 45 26-74 527-572 (637)
206 3v33_A Ribonuclease ZC3H12A; r 20.1 1.2E+02 0.0039 21.8 3.8 35 34-73 92-134 (223)
No 1
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=100.00 E-value=1.4e-34 Score=220.86 Aligned_cols=89 Identities=20% Similarity=0.209 Sum_probs=85.2
Q ss_pred CccccccChhhhcCCCCCChhhHHhH--------HHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCC
Q 034412 1 MNFRHTLYPSYKNNRPPTPDTMVQGL--------QYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPN 72 (95)
Q Consensus 1 ~~~R~~l~p~YKanR~~~p~~l~~q~--------~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~D 72 (95)
+||||++||+|||||+++|++|..|+ +.+++++++|||++++.+||||||||||||+++...|++|+|+|+|
T Consensus 76 ~tfR~elyp~YKanR~~~PeeL~~Q~~~l~~Qi~p~ike~l~a~gi~~l~~~G~EADDiIgTLA~~a~~~g~~V~IvSgD 155 (305)
T 3h7i_A 76 GYWRRDFAYYYKKNRGKAREESTWDWEGYFESSHKVIDELKAYMPYIVMDIDKYEANDHIAVLVKKFSLEGHKILIISSD 155 (305)
T ss_dssp CCHHHHHSTTTTHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred cchHhhhCHHhccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHCCCCEEccCCccHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 48999999999999999999998887 8999999999999999999999999999999999999999999999
Q ss_pred CCc-cccc-CCeEEEEecc
Q 034412 73 KDS-QILS-HSLCLLRIAP 89 (95)
Q Consensus 73 kDl-QLv~-~~v~v~~~~k 89 (95)
||| ||++ ++|++|++.+
T Consensus 156 KDl~QLv~~~~V~~~~~~~ 174 (305)
T 3h7i_A 156 GDFTQLHKYPNVKQWSPMH 174 (305)
T ss_dssp CCCGGGGGSSSEEEEETTT
T ss_pred CCccccccCCCeEEEecCC
Confidence 999 9999 8999999854
No 2
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=99.96 E-value=2e-30 Score=196.64 Aligned_cols=88 Identities=22% Similarity=0.317 Sum_probs=84.9
Q ss_pred CccccccChhhhcCCCCCC-------hhhHHh-HHHHHHHHHH--CCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 1 MNFRHTLYPSYKNNRPPTP-------DTMVQG-LQYLKASIKA--MSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 1 ~~~R~~l~p~YKanR~~~p-------~~l~~q-~~~i~~~l~~--~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
+|||+++||+||+||+++| ++|..| ++.++++++. |||+++..+||||||+|||||+++...|++|+|+|
T Consensus 71 ~tfR~~~~~~YKa~R~~~p~~~~~~~e~L~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~G~~v~IvS 150 (290)
T 1exn_A 71 SVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLIS 150 (290)
T ss_dssp CHHHHHHCTTTTHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEEC
T ss_pred chhhhhCcHHHHcCCCCCCccccccchhHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4899999999999999999 999999 9999999999 99999999999999999999999988899999999
Q ss_pred CCCCc-ccccCCeEEEEec
Q 034412 71 PNKDS-QILSHSLCLLRIA 88 (95)
Q Consensus 71 ~DkDl-QLv~~~v~v~~~~ 88 (95)
+|||+ ||++++|+++++.
T Consensus 151 ~DkDl~Qlv~~~v~v~~~~ 169 (290)
T 1exn_A 151 TDGDWDTLLTDKVSRFSFT 169 (290)
T ss_dssp SCGGGGGGCCSSEEEEETT
T ss_pred CCCChhhcCCCCEEEEECC
Confidence 99999 9999999999864
No 3
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=99.91 E-value=3.9e-26 Score=191.56 Aligned_cols=87 Identities=34% Similarity=0.676 Sum_probs=84.4
Q ss_pred CccccccChhhhcCCCCCChhhHHhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc-cccc
Q 034412 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS-QILS 79 (95)
Q Consensus 1 ~~~R~~l~p~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~DkDl-QLv~ 79 (95)
++||+++||+||+||+++|++|..|++.++++|+.|||+++..|||||||+|||||+++...|+.|+|+|+|||+ ||++
T Consensus 71 ~tfR~~~~~~YKa~R~~~pe~l~~q~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~~~~~~G~~v~IvS~DkDllql~~ 150 (832)
T 1bgx_T 71 PSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLS 150 (832)
T ss_dssp SCSSSGGGGTTTSCCCCCCTTSTTGGGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHHHHHHHTCCBCCCCSSTTCCTTCC
T ss_pred ccccccchHHHHhccccChHHHHHHHHHHHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHHcCCeEEEEeCCCChhhcCc
Confidence 489999999999999999999999999999999999999999999999999999999998889999999999999 9999
Q ss_pred CCeEEEEe
Q 034412 80 HSLCLLRI 87 (95)
Q Consensus 80 ~~v~v~~~ 87 (95)
++|.++.+
T Consensus 151 ~~v~~~~~ 158 (832)
T 1bgx_T 151 DRIHVLHP 158 (832)
T ss_dssp TTBCBCCS
T ss_pred CCEEEEeC
Confidence 99999987
No 4
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=99.80 E-value=2.4e-20 Score=141.69 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=74.4
Q ss_pred CccccccChhhhcCCCCCChhhHH-----------------------hHHHHHHHHHHCCCcEEecCCcchhHHHHHHHH
Q 034412 1 MNFRHTLYPSYKNNRPPTPDTMVQ-----------------------GLQYLKASIKAMSIKVIEVPGVEADDVIGKLAV 57 (95)
Q Consensus 1 ~~~R~~l~p~YKanR~~~p~~l~~-----------------------q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~ 57 (95)
++||++.|++||++|.++|+++.. |++.++++|+.+|++++..|| ||||+||+|++
T Consensus 84 ~~~k~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apg-EAD~~ia~La~ 162 (326)
T 1a76_A 84 PKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPS-EGEAQASYMAK 162 (326)
T ss_dssp SCCCCSSCCSSCSSSCSSCSCCCCCCSHHHHHTTSTTGGGGCSSCHHHHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCeEECCc-cHHHHHHHHHH
Confidence 479999999999999999998865 999999999999999999999 99999999998
Q ss_pred HhhhCCCcEEEEcCCCCc-ccccCCeEEEE
Q 034412 58 RSVDDGFKIQVVSPNKDS-QILSHSLCLLR 86 (95)
Q Consensus 58 ~~~~~~~~v~IvS~DkDl-QLv~~~v~v~~ 86 (95)
+ |..+.|+|+|+|+ |+.+++|.+..
T Consensus 163 ~----g~~~~I~S~D~Dll~~~~~~v~~~~ 188 (326)
T 1a76_A 163 K----GDVWAVVSQDYDALLYGAPRVVRNL 188 (326)
T ss_dssp T----TSSSEEECSSSGGGGGTCSEEEESS
T ss_pred C----CCEEEEecCCcccceecCCEEEEee
Confidence 5 7789999999999 99999876543
No 5
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=99.79 E-value=5.2e-20 Score=141.07 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=54.0
Q ss_pred CccccccChhhhcCCCCCChhhH-----------------------HhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHH
Q 034412 1 MNFRHTLYPSYKNNRPPTPDTMV-----------------------QGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAV 57 (95)
Q Consensus 1 ~~~R~~l~p~YKanR~~~p~~l~-----------------------~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~ 57 (95)
.+||++.|++||++|.++|+++. .|++.++++|+.+||+++..|| ||||+||+|++
T Consensus 81 ~~~r~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~ap~-EADa~ia~La~ 159 (346)
T 2izo_A 81 PEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPS-EGEAEAAYLNK 159 (346)
T ss_dssp --------------------------------------------CHHHHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHCCCCEEEcCC-cHHHHHHHHHh
Confidence 37999999999999999999986 7999999999999999999999 99999999997
Q ss_pred HhhhCCCcEEEEcCCCCc-ccccCCeEEEE
Q 034412 58 RSVDDGFKIQVVSPNKDS-QILSHSLCLLR 86 (95)
Q Consensus 58 ~~~~~~~~v~IvS~DkDl-QLv~~~v~v~~ 86 (95)
.|..+.|+|+|+|+ |+++++|.+..
T Consensus 160 ----~g~~~~I~S~D~D~l~~~~~~v~~~~ 185 (346)
T 2izo_A 160 ----LGLSWAAASQDYDAILFGAKRLVRNL 185 (346)
T ss_dssp ----TTSSSEEECSSSHHHHTTCSEEEESS
T ss_pred ----CCCeEEEECCCCCcceecCCeEEEEe
Confidence 47889999999999 99999887765
No 6
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=99.72 E-value=2.5e-18 Score=133.27 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=63.0
Q ss_pred CccccccChhhhcCCCCC------------Chhh-----------HHhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHH
Q 034412 1 MNFRHTLYPSYKNNRPPT------------PDTM-----------VQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAV 57 (95)
Q Consensus 1 ~~~R~~l~p~YKanR~~~------------p~~l-----------~~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~ 57 (95)
.+||++.+++||++|.++ |+++ ..|++.++++|+.|||+++..|| ||||+||+|++
T Consensus 89 ~~~K~~~~~~yk~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gi~~i~apg-EADd~iA~La~ 167 (379)
T 1ul1_X 89 PQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS-EAEASCAALVK 167 (379)
T ss_dssp CSCCCCCCCCC-----------------------------CCCCCCSCHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHH
T ss_pred cccccchHHHHHhhhhHHHHHHHHHHHcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCeecCCC-cHHHHHHHHHh
Confidence 479999999999999887 6666 78899999999999999999999 99999999998
Q ss_pred HhhhCCCcEEEEcCCCCc-ccccCCeEEEE
Q 034412 58 RSVDDGFKIQVVSPNKDS-QILSHSLCLLR 86 (95)
Q Consensus 58 ~~~~~~~~v~IvS~DkDl-QLv~~~v~v~~ 86 (95)
+ |..+.|+|+|+|+ |+.+++|.+..
T Consensus 168 ~----g~~~~iiS~D~Dll~~g~~~v~~~~ 193 (379)
T 1ul1_X 168 A----GKVYAAATEDMDCLTFGSPVLMRHL 193 (379)
T ss_dssp H----TSSSEEECSCTHHHHTTCSEEEECS
T ss_pred c----CCeEEEEecCcCccccccceEEEEe
Confidence 5 3456799999999 99999876654
No 7
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=99.71 E-value=3.8e-18 Score=131.13 Aligned_cols=77 Identities=17% Similarity=0.162 Sum_probs=68.9
Q ss_pred CccccccChhhhcCC------------CCCChhh-----------HHhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHH
Q 034412 1 MNFRHTLYPSYKNNR------------PPTPDTM-----------VQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAV 57 (95)
Q Consensus 1 ~~~R~~l~p~YKanR------------~~~p~~l-----------~~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~ 57 (95)
.+||+++|++||++| .++|+++ ..|++.++++|++|||+++..|| ||||+||+|++
T Consensus 89 ~~~r~~~~~~yk~~R~~~~~~~~~a~r~~~pe~l~~~~~~~~~vt~~q~~~~~~lL~~~gip~i~ap~-EADd~ia~La~ 167 (341)
T 3q8k_A 89 PQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS-EAEASCAALVK 167 (341)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHH
T ss_pred cccchhhhHHHHHHHhHhHHHHHHHHhcCCHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCEEECCc-cHHHHHHHHHh
Confidence 479999999999665 4699999 89999999999999999999999 99999999998
Q ss_pred HhhhCCCcEEEEcCCCCc-ccccCCe
Q 034412 58 RSVDDGFKIQVVSPNKDS-QILSHSL 82 (95)
Q Consensus 58 ~~~~~~~~v~IvS~DkDl-QLv~~~v 82 (95)
+ |.-+.|+|+|+|+ |++++.|
T Consensus 168 ~----g~v~~i~s~D~D~l~~~~~~v 189 (341)
T 3q8k_A 168 A----GKVYAAATEDMDCLTFGSPVL 189 (341)
T ss_dssp T----TSSSEEECSCTHHHHTTCSEE
T ss_pred c----CCeEEEEcCCccccccCCcEE
Confidence 4 4556689999999 9999866
No 8
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=99.71 E-value=1.2e-18 Score=135.01 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=73.1
Q ss_pred CccccccChhhhcCCCCCChhhHHh-----------------------HHHHHHHHHHCCCcEEecCCcchhHHHHHHHH
Q 034412 1 MNFRHTLYPSYKNNRPPTPDTMVQG-----------------------LQYLKASIKAMSIKVIEVPGVEADDVIGKLAV 57 (95)
Q Consensus 1 ~~~R~~l~p~YKanR~~~p~~l~~q-----------------------~~~i~~~l~~~gi~~~~~~g~EADDvIatla~ 57 (95)
.+||++.+++||++|+++|+++..| ++.++++|+++||+++..|| ||||.||+|++
T Consensus 98 p~~K~~~~~~yK~~R~~~~e~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~i~~lL~~~GIp~i~apg-EADaqiA~La~ 176 (363)
T 3ory_A 98 PELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPA-EGEAQAAYIVK 176 (363)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTCCCCCCCHHHHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHH
T ss_pred ccchHHHHHHHHHhhhhchHHHHHHHHcCCHHHHHHHHhccccCCHHHHHHHHHHHHHCCCCEEEeCc-cHHHHHHHHHH
Confidence 3799999999999999999999886 99999999999999999999 99999999984
Q ss_pred HhhhCCCcEEEEcCCCCc-ccccCCeEE
Q 034412 58 RSVDDGFKIQVVSPNKDS-QILSHSLCL 84 (95)
Q Consensus 58 ~~~~~~~~v~IvS~DkDl-QLv~~~v~v 84 (95)
.|..+.|+|+|+|+ |+++++|..
T Consensus 177 ----~g~~~~I~S~D~D~l~fg~~~v~~ 200 (363)
T 3ory_A 177 ----KGDAYASASQDYDSLLFGSPKLVR 200 (363)
T ss_dssp ----TTSCSEEECSSSHHHHTTCSEEEE
T ss_pred ----CCCeEEEECCCcCccccCCCeEEE
Confidence 57899999999999 999988754
No 9
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=99.65 E-value=3.4e-17 Score=124.91 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=72.4
Q ss_pred CccccccCh---------------hhhcCCCCCChhh--------HHhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHH
Q 034412 1 MNFRHTLYP---------------SYKNNRPPTPDTM--------VQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAV 57 (95)
Q Consensus 1 ~~~R~~l~p---------------~YKanR~~~p~~l--------~~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~ 57 (95)
.+||++.++ .||++|.++|+++ ..|++.++++|+.+||+++..| +||||+||+|++
T Consensus 84 ~~~K~~~~~~R~~~r~~~~~~~~~~yk~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~gip~i~ap-~EADa~iA~La~ 162 (340)
T 1b43_A 84 PEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAP-SEGEAQAAYMAA 162 (340)
T ss_dssp CCCSSCSSTTCCCCTTHHHHHHHHHHHHSCHHHHHHHHHTSGGGTHHHHHHHHHHHHHHTCCEEECS-SCHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcEEEcC-hhHHHHHHHHHH
Confidence 368888888 7999999999988 7899999999999999999999 999999999997
Q ss_pred HhhhCCCcEEEEcCCCCc-ccccCCeEEEE
Q 034412 58 RSVDDGFKIQVVSPNKDS-QILSHSLCLLR 86 (95)
Q Consensus 58 ~~~~~~~~v~IvS~DkDl-QLv~~~v~v~~ 86 (95)
+ |..+.|+|+|+|+ |+.+++|.+..
T Consensus 163 ~----g~~~~i~S~D~D~l~~g~~~v~~~~ 188 (340)
T 1b43_A 163 K----GSVYASASQDYDSLLFGAPRLVRNL 188 (340)
T ss_dssp H----TSSSEEECSSSHHHHTTCSEEEEST
T ss_pred c----CCEEEEEccCCCcceecCcEEEEEe
Confidence 4 4677899999999 99999886543
No 10
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=99.65 E-value=1.5e-17 Score=126.66 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=68.5
Q ss_pred CccccccChhhhcCCCCCC-----------hhhHH-----------hHHHHHHHHHHCCCcEEecCCcchhHHHHHHHHH
Q 034412 1 MNFRHTLYPSYKNNRPPTP-----------DTMVQ-----------GLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVR 58 (95)
Q Consensus 1 ~~~R~~l~p~YKanR~~~p-----------~~l~~-----------q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~ 58 (95)
++||++.|++||++|.++| +++.. |++.++++|+++||+++..|| |||..+|+++
T Consensus 84 ~~~R~~~~~~yk~~R~~~~~~~~~~~~~g~~~l~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apg-eAEA~lA~la-- 160 (336)
T 1rxw_A 84 PEFKKAEIEERKKRRAEAEEMWIAALQAGDKDAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDAPS-EGEAQAAYMA-- 160 (336)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHCCCCHHHHHHHHHHHHHTTCCEEECSS-CHHHHHHHHH--
T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhhccCCHHHHHHHHHHHHhCCCCEEEcCc-hHHHHHHHHH--
Confidence 4799999999999999999 66665 899999999999999999999 6666777776
Q ss_pred hhhCCCcEEEEcCCCCc-ccccCCe
Q 034412 59 SVDDGFKIQVVSPNKDS-QILSHSL 82 (95)
Q Consensus 59 ~~~~~~~v~IvS~DkDl-QLv~~~v 82 (95)
+.|..+.|+|+|+|+ |+++++|
T Consensus 161 --~~g~~~~I~S~D~Dllql~~~~v 183 (336)
T 1rxw_A 161 --AKGDVEYTGSQDYDSLLFGSPRL 183 (336)
T ss_dssp --HTTSSSEEECSSSHHHHTTCSEE
T ss_pred --HcCCeeEEEcCCCCcceecCCeE
Confidence 367899999999999 9999988
No 11
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=99.34 E-value=1.1e-12 Score=101.17 Aligned_cols=72 Identities=8% Similarity=0.106 Sum_probs=57.5
Q ss_pred cChhhhcCCCCCChh--------hHHhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc-cc
Q 034412 7 LYPSYKNNRPPTPDT--------MVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS-QI 77 (95)
Q Consensus 7 l~p~YKanR~~~p~~--------l~~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~DkDl-QL 77 (95)
.+..|+++|...... -..+.+.++++|+.+||+++..| +||||+||+|++ .|..+.|+|+|+|+ |+
T Consensus 103 ~~~~~~~g~~~~a~~~f~~~~~vt~~~~~~i~~~L~~~gIp~i~ap-~EADaqiA~La~----~g~~~~I~S~D~Dll~~ 177 (352)
T 3qe9_Y 103 GKQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGVDCLVAP-YEADAQLAYLNK----AGIVQAIITEDSALLAF 177 (352)
T ss_dssp HHHHTTSSCCHHHHHHHGGGCCCCHHHHHHHHHHHHHTTCEEEECS-SCHHHHHHHHHH----TTSCSEEECSCGGGGGG
T ss_pred HHHHHHhCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcEEECC-cchHHHHHHHHH----CCCeEEEEeCCcCcccc
Confidence 456777776321100 12468889999999999999987 999999999997 47888999999999 99
Q ss_pred ccCCeE
Q 034412 78 LSHSLC 83 (95)
Q Consensus 78 v~~~v~ 83 (95)
++++|.
T Consensus 178 ~~~~v~ 183 (352)
T 3qe9_Y 178 GCKKVI 183 (352)
T ss_dssp TCSEEE
T ss_pred cCCeEE
Confidence 999873
No 12
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=92.91 E-value=0.18 Score=33.99 Aligned_cols=52 Identities=17% Similarity=0.136 Sum_probs=31.6
Q ss_pred HHHHHHHHCCCcEEecCC---------cchhHHHHHHHHHhhhCCCcEEEEcCCCCc-cccc
Q 034412 28 YLKASIKAMSIKVIEVPG---------VEADDVIGKLAVRSVDDGFKIQVVSPNKDS-QILS 79 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g---------~EADDvIatla~~~~~~~~~v~IvS~DkDl-QLv~ 79 (95)
.+.+.|...|+.++..|- =.+|=-|+.=+-.....-..++|+|+|.|| .|+.
T Consensus 65 ~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv~ 126 (165)
T 2qip_A 65 QFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVE 126 (165)
T ss_dssp HHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHHH
T ss_pred HHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECChhHHHHHH
Confidence 344567778998765442 234523332222222344689999999999 8874
No 13
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum}
Probab=90.71 E-value=0.32 Score=33.03 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=39.2
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.++|...|+..+..-|.++|=++-+-|..+...|++|+|++
T Consensus 100 ~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~da~~~Gy~V~vv~ 142 (182)
T 3eef_A 100 NLDMILRANGIDTVVLIGLDADICVRHTAADALYRNYRIIVVE 142 (182)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHhcCCCeEEEEEeccCHHHHHHHHHHHHCCCEEEEeh
Confidence 4777888999999999999999999999999999999999865
No 14
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris}
Probab=90.09 E-value=0.38 Score=33.36 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=39.3
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.++|...|+..+.+-|.++|=++-+-|..+...|++|+|++
T Consensus 116 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~V~vv~ 158 (204)
T 3hu5_A 116 ECDMLLRRRGVDTLLVSGTQYPNCIRGTAVDAFALDYDVVVVT 158 (204)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHhCCCCeEEEeeeccchHHHHHHHHHHHCCCEEEEeh
Confidence 4777889999999999999999999999999999999999875
No 15
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3
Probab=89.88 E-value=0.41 Score=32.76 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=39.1
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.++|...|+..+.+-|.++|=++.+-|..+...|++|+|++
T Consensus 122 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~v~vv~ 164 (199)
T 1j2r_A 122 DLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAE 164 (199)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHCCCCEEEEEeeeccHHHHHHHHHHHHCCCEEEEeh
Confidence 4677888899999999999999999999999999999999975
No 16
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A
Probab=89.84 E-value=0.42 Score=32.24 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=39.1
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.+.|...|+..+..-|.++|=++.+-|..+.+.|++|+|++
T Consensus 110 ~L~~~L~~~gi~~lvi~G~~t~~CV~~Ta~da~~~Gy~v~vv~ 152 (180)
T 1im5_A 110 DLAKILRGNGVKRVYICGVATEYCVRATALDALKHGFEVYLLR 152 (180)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHhCCCCEEEEEEeecCHHHHHHHHHHHHCCCEEEEeh
Confidence 3677788899999999999999999999999999999999975
No 17
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens}
Probab=89.60 E-value=0.44 Score=33.11 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=39.3
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.++|...|+..+.+-|.++|=++-+-|..+...|++|+|++
T Consensus 110 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~ 152 (204)
T 3hb7_A 110 DLDLYLKEEGIDTVVLTGVWTNVCVRSTATDALANAYKVITLS 152 (204)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHCCCCEEEEEeecccHHHHHHHHHHHHCCCEEEEec
Confidence 4777888899999999999999999999999999999999975
No 18
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A*
Probab=89.28 E-value=0.48 Score=32.74 Aligned_cols=43 Identities=16% Similarity=0.085 Sum_probs=37.9
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.+.|...|+..+.+-|.++|=++-+-|..+.+.|++|+|++
T Consensus 132 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~ 174 (207)
T 1nf9_A 132 DLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVA 174 (207)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHcCCCEEEEEeeecChHHHHHHHHHHHCCCEEEEeC
Confidence 3677788899999999999999888888888888999999975
No 19
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV}
Probab=89.23 E-value=0.47 Score=33.72 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=39.1
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.++|...|+..+.+-|.++|=++-+-|..+...|++|+|++
T Consensus 129 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~ 171 (233)
T 3irv_A 129 DLDTVLRARDVDTIIVCGTVTNVCCETTIRDGVHREYKVIALS 171 (233)
T ss_dssp THHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHhCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEEec
Confidence 4777888999999999999999999999999999999999864
No 20
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} SCOP: c.33.1.0
Probab=88.83 E-value=0.54 Score=32.50 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=39.1
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.++|...|+..+.+-|.++|=++-+-|..+...|++|+|++
T Consensus 116 ~L~~~L~~~gi~~lvi~G~~t~~CV~~Ta~~a~~~G~~v~v~~ 158 (199)
T 3txy_A 116 DLDVQLRRRGITDIVLTGIATNIGVESTAREAYENNYNVVVVS 158 (199)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHhCCCCEEEEEeeccCHHHHHHHHHHHHCCCEEEEec
Confidence 4777888899999999999999999999999999999999875
No 21
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase, resistance to pyrazinamide, hydrolase; 2.20A {Mycobacterium tuberculosis} PDB: 3pl1_A
Probab=88.34 E-value=0.62 Score=31.92 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=39.1
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.++|...|+..+.+-|.++|=++.+-|..+...|++|+|++
T Consensus 115 ~L~~~L~~~gi~~lvv~G~~t~~CV~~Ta~da~~~G~~v~v~~ 157 (186)
T 3gbc_A 115 PLLNWLRQRGVDEVDVVGIATDHCVRQTAEDAVRNGLATRVLV 157 (186)
T ss_dssp BHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHhcCCCEEEEEEecccHHHHHHHHHHHHCCCeEEEEh
Confidence 4677888899999999999999999999999999999999975
No 22
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=88.18 E-value=0.63 Score=29.27 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHhhhCCCcEEEEcCC-CCc-ccccCCeEEEEec
Q 034412 48 ADDVIGKLAVRSVDDGFKIQVVSPN-KDS-QILSHSLCLLRIA 88 (95)
Q Consensus 48 ADDvIatla~~~~~~~~~v~IvS~D-kDl-QLv~~~v~v~~~~ 88 (95)
+|=+|+..|... | +.++|.| +|| ++ +++.+.++.
T Consensus 98 ~D~lIaA~A~~~---~--~~lvT~d~~df~~~--~gl~~~nw~ 133 (134)
T 3zvk_A 98 NDLLIASHAIAE---N--ATLVTNNIKEFKRI--PNLILENWD 133 (134)
T ss_dssp HHHHHHHHHHHH---T--CEEEESSTTTSCSC--TTCEEEECC
T ss_pred cHHHHHHHHHHC---C--CEEEECCHHHhcCC--CCCeeeCCC
Confidence 566666555432 3 4689999 999 65 457777654
No 23
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum}
Probab=87.88 E-value=0.52 Score=32.55 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=38.6
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.++|...|+..+.+-|.++|=++-+-|..+...|++|+|++
T Consensus 103 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~v~vv~ 145 (198)
T 3mcw_A 103 GLEALLRANGWLELVVAGVSTSNSVEATVRMAGNLGFAVCLAE 145 (198)
T ss_dssp SHHHHHHHHTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHcCCCCeEEEEEcCcChHHHHHHHHHHHCCCEEEEeC
Confidence 4677788889999999999999999999999999999999874
No 24
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A
Probab=87.79 E-value=0.67 Score=32.70 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.++|...|+..+.+-|.++|=++.+-|..+...|++|+|++
T Consensus 133 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~Gy~v~vv~ 175 (211)
T 3o94_A 133 DLDIRLRERRVSTVILTGVLTDISVLHTAIDAYNLGYDIEIVK 175 (211)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHhCCCCeEEEEeeccChHHHHHHHHHHHCCCEEEEec
Confidence 4677888899999999999999999999999999999999874
No 25
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440}
Probab=87.68 E-value=0.54 Score=32.54 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=38.7
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.++|...|+..+..-|.++|=++-+-|..+...|++|+|++
T Consensus 113 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~V~vv~ 155 (197)
T 4h17_A 113 KLHETLQELGHLDLIVCGFMSHSSVSTTVRRAKDYGYRCTLVE 155 (197)
T ss_dssp CHHHHHHHHTCSEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHhcCCCEEEEEeeCcCHHHHHHHHHHHHCCCEEEEeC
Confidence 4677788889999999999999999999999999999999865
No 26
>3tg2_A Vibriobactin-specific isochorismatase; hydrolase; HET: ISC PGE; 1.10A {Vibrio cholerae} PDB: 3tb4_A*
Probab=87.59 E-value=0.54 Score=33.39 Aligned_cols=43 Identities=16% Similarity=0.031 Sum_probs=38.8
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.+.|...|+..+.+-|.++|=++-+-|..+...|++|+|++
T Consensus 128 ~L~~~L~~~gi~~lii~G~~t~~CV~~Ta~da~~~Gy~v~vv~ 170 (223)
T 3tg2_A 128 PLLDWLRETGRDQLIITGVYAHIGILSTALDAFMFDIQPFVIG 170 (223)
T ss_dssp SHHHHHHHHTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHhcCcCceEEeecccChHHHHHHHHHHHCCCEEEEeC
Confidence 3667788899999999999999999999998999999999976
No 27
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans}
Probab=87.28 E-value=0.68 Score=32.51 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=39.3
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.+.|...|+..+.+-|.++|=++-+-+..+...|++|+|++
T Consensus 99 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~ 141 (211)
T 3oqp_A 99 DLAGWLAARQIDTLTVTGYMTHNCDASTINHAVHSGLAVEFLH 141 (211)
T ss_dssp SHHHHHHTTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHhCCCCEEEEEeeccCHHHHHHHHHHHHCCCeEEEec
Confidence 4677888999999999999999999999999999999999976
No 28
>3lqy_A Putative isochorismatase hydrolase; structural genomics, PSI-2, PROT structure initiative, midwest center for structural genomic; 1.75A {Oleispira antarctica} SCOP: c.33.1.0
Probab=87.27 E-value=0.54 Score=32.16 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=38.1
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.+.|...|+..+..-|.++|=++-+-|..+...|++|+|++
T Consensus 103 ~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~da~~~Gy~v~vv~ 145 (190)
T 3lqy_A 103 DLKKVLDDAGIKKLVIVGAMTHMAIDAVTRAAEDLGYECAVAH 145 (190)
T ss_dssp SHHHHHHHC-CCEEEEEEECTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred hHHHHHHhCCCCEEEEEecCcChHHHHHHHHHHHCCCEEEEec
Confidence 4777888999999999999999999999998888999999875
No 29
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A*
Probab=87.03 E-value=0.78 Score=32.47 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=38.1
Q ss_pred HHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 29 LKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 29 i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
+.++|...|+..+.+-|.++|=++.+-|..+...|++|+|++
T Consensus 158 L~~~L~~~gi~~lvv~G~~T~~CV~~Ta~dA~~~Gy~V~Vv~ 199 (235)
T 2wt9_A 158 LTGYLKERGIDTVYVVGIATDFCVAWTALDAVKQGFKTLVIE 199 (235)
T ss_dssp HHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHCCCCEEEEEEeCccHHHHHHHHHHHhCCCEEEEec
Confidence 666788899999999999999999999999999999999964
No 30
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis}
Probab=87.01 E-value=0.54 Score=31.50 Aligned_cols=43 Identities=12% Similarity=0.255 Sum_probs=38.6
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.+.|...|+..+..-|.++|=++.+-+..+...|++|+|++
T Consensus 91 ~L~~~L~~~gi~~lvv~G~~T~~CV~~Ta~da~~~Gy~v~v~~ 133 (167)
T 2a67_A 91 NLNDLLTEQAVQTLEIAGVQTEFCVDTTIRMAHGLGYTCLMTP 133 (167)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHHTCEEEECT
T ss_pred cHHHHHHHCCCCEEEEEecccChHHHHHHHHHHHCCCEEEEec
Confidence 4667788899999999999999999999998888999999875
No 31
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}
Probab=86.30 E-value=0.87 Score=33.01 Aligned_cols=43 Identities=19% Similarity=0.065 Sum_probs=38.5
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.+.|...|+..+.+-|.++|=++.+-|..+...|++|+|++
T Consensus 135 ~L~~~L~~~gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~ 177 (287)
T 2fq1_A 135 PLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVA 177 (287)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHCCCCEEEEEEeCcchHHHHHHHHHHHCCCEEEEec
Confidence 4677888999999999999999999888888889999999974
No 32
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} SCOP: c.33.1.0
Probab=86.13 E-value=0.72 Score=32.56 Aligned_cols=43 Identities=12% Similarity=0.271 Sum_probs=39.2
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.++|...|+..+.+-|.++|=++-+-|..+...|++|+|++
T Consensus 141 ~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~da~~~Gy~v~vv~ 183 (226)
T 3kl2_A 141 NLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLT 183 (226)
T ss_dssp SHHHHHHHHTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHhCCCCCcEEEeccCcchHHHHHHHHHHHCCCEEEEec
Confidence 4778888899999999999999999999998999999999975
No 33
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A
Probab=86.13 E-value=0.94 Score=31.79 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=37.9
Q ss_pred HHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 29 LKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 29 i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
+.++|...|+..+.+-|..+|=++.+-|..+...|++|+|++
T Consensus 145 L~~~L~~~gi~~l~i~G~~t~~CV~~Ta~~a~~~g~~v~v~~ 186 (216)
T 3v8e_A 145 MNKYLEKHHTDEVYIVGVALEYXVKATAISAAELGYKTTVLL 186 (216)
T ss_dssp HHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhCCCCEEEEEEeccccHHHHHHHHHHHCCCEEEEec
Confidence 566778899999999999999999999999999999999974
No 34
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum}
Probab=86.08 E-value=0.8 Score=32.59 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=38.1
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.++|...|+..+.+-|.++|=++.+-|..+...|++|+|++
T Consensus 147 ~L~~~L~~~gi~~lvv~G~~T~~CV~~Ta~dA~~~Gy~V~Vv~ 189 (227)
T 3r2j_A 147 GLAGLLHSIGARRVFVCGVAYDFCVFFTAMDARKNGFSVVLLE 189 (227)
T ss_dssp SHHHHHHHHTCCEEEEEESCTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHcCCCEEEEEEeccchHHHHHHHHHHHCCCEEEEEh
Confidence 3566777889999999999999999999999999999999874
No 35
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A
Probab=85.98 E-value=0.77 Score=32.88 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=38.7
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.++|...|+..+.+-|.++|=++-+-|..+...|++|+|++
T Consensus 149 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~V~vv~ 191 (236)
T 3ot4_A 149 MLAAWLAQRGVQTLLVAGATTSGCVRASVVDAMSAGFRPLVLS 191 (236)
T ss_dssp SHHHHHHHTTCCEEEEEESCTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred hHHHHHHHCCCCEEEEeCccCcHHHHHHHHHHHHCCCEEEEec
Confidence 4777888999999999999999999998988888999999975
No 36
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3
Probab=85.07 E-value=0.83 Score=33.23 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=38.5
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.++|...|+..+.+-|.++|=++-+-|..+...|++|+|++
T Consensus 154 ~L~~~Lr~~gi~~lvI~Gv~T~~CV~~Ta~dA~~~Gy~V~Vv~ 196 (264)
T 1nba_A 154 NLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPR 196 (264)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHHTCEEEEEG
T ss_pred hHHHHHHhCCCCEEEEEecCcCCHHHHHHHHHHHCCCEEEEec
Confidence 3677788899999999999999999988888888999999975
No 37
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3
Probab=84.65 E-value=0.66 Score=32.33 Aligned_cols=44 Identities=23% Similarity=0.414 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 27 QYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 27 ~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
..+.+.|...|+..+.+-|.++|=++-+-|..+...|++|+|++
T Consensus 94 t~L~~~L~~~gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~ 137 (208)
T 1yac_A 94 EDFVKAVKATGKKQLIIAGVVTEVCVAFPALSAIEEGFDVFVVT 137 (208)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSCCCCCHHHHHHHHHTTCEEEEET
T ss_pred chHHHHHHhcCCCEEEEEEeccchhHHHHHHHHHHCCCEEEEEC
Confidence 45777888999999999999999999999998999999999985
No 38
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=84.34 E-value=0.32 Score=31.92 Aligned_cols=39 Identities=8% Similarity=0.048 Sum_probs=30.0
Q ss_pred CCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc-cccc-CCeEEEEecc
Q 034412 44 PGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS-QILS-HSLCLLRIAP 89 (95)
Q Consensus 44 ~g~EADDvIatla~~~~~~~~~v~IvS~DkDl-QLv~-~~v~v~~~~k 89 (95)
.| . |+.|+.+|... ..+++|+|++| .... .+|.+..+..
T Consensus 97 ~~-~-D~~Ila~A~~~-----~~~LvT~D~~l~~~a~~~Gv~vi~~~~ 137 (147)
T 1o4w_A 97 SE-G-DPSLIEAAEKY-----GCILITNDKELKRKAKQRGIPVGYLKE 137 (147)
T ss_dssp SC-S-HHHHHHHHHHH-----TCEEECCCHHHHHHHHHTTCCEECCCC
T ss_pred CC-c-hHHHHHHHHHh-----CCEEEECCHHHHHHHHHCCCeEEEecC
Confidence 45 4 99999988753 26899999999 6654 5899988753
No 39
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi}
Probab=83.12 E-value=0.67 Score=32.41 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=38.8
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.+.|...|+..+..-|.++|=++-+-|..+...|++|+|++
T Consensus 100 ~L~~~L~~~gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~ 142 (204)
T 1yzv_A 100 QVMPLVDLPEVEQVVLWGFETHVCILQTAAALLDMKKKVVIAV 142 (204)
T ss_dssp TTHHHHSSTTEEEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHhCCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEEC
Confidence 4667788899999999999999999999999999999999875
No 40
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=82.04 E-value=0.55 Score=30.12 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhhhCCCcEEEEcCC-CCc-ccccCCeEEEEe
Q 034412 48 ADDVIGKLAVRSVDDGFKIQVVSPN-KDS-QILSHSLCLLRI 87 (95)
Q Consensus 48 ADDvIatla~~~~~~~~~v~IvS~D-kDl-QLv~~~v~v~~~ 87 (95)
+|-+|+..|... | +.|+|.| ||| .+-.-++.+++|
T Consensus 97 ~D~lIaA~A~~~---~--~~lvT~D~kdf~~i~~~~i~~i~~ 133 (149)
T 1v96_A 97 EDIITATTAIYT---N--SLLVTDDPKRYEPIRRFGLDTMPL 133 (149)
T ss_dssp HHHHHHHHHHHH---T--CEEEESCHHHHGGGGGGTCCEEEH
T ss_pred hHHHHHHHHHHc---C--CEEEECCHHHHhhhhhCCeeecCH
Confidence 677777766543 3 3588999 699 765557777765
No 41
>2h1c_A Trafficking protein B; DNA binding, PIN domain, RHH domain, gene regulation; 1.80A {Neisseria gonorrhoeae} SCOP: c.120.1.1 PDB: 2bsq_A* 2h1o_A*
Probab=80.94 E-value=0.54 Score=29.28 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHhhhCCCcEEEEcCC-CCc-ccccCCeEEEEec
Q 034412 48 ADDVIGKLAVRSVDDGFKIQVVSPN-KDS-QILSHSLCLLRIA 88 (95)
Q Consensus 48 ADDvIatla~~~~~~~~~v~IvS~D-kDl-QLv~~~v~v~~~~ 88 (95)
+|=+|+..|... | +.++|.| +|| .+ ++.+++|.
T Consensus 103 ~D~liaA~A~~~---~--~~lvT~d~~df~~~---~l~~~~P~ 137 (139)
T 2h1c_A 103 ADGYIAATAKQH---S--LTVATRDTGSFFAA---DVAVFNPW 137 (139)
T ss_dssp HHHHHHHHHHHH---T--CEEECSCCHHHHHT---TCCEECTT
T ss_pred cHHHHHHHHHHc---C--CeEEECCHHHHhhC---CCeeeCCC
Confidence 455555444322 3 4799999 899 66 68888774
No 42
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=79.31 E-value=5.1 Score=26.78 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=34.9
Q ss_pred HHHHHHHHHCCCcEEecC--CcchhHHHHHHHHHhhhCCCcEEEEcC-----CCCc
Q 034412 27 QYLKASIKAMSIKVIEVP--GVEADDVIGKLAVRSVDDGFKIQVVSP-----NKDS 75 (95)
Q Consensus 27 ~~i~~~l~~~gi~~~~~~--g~EADDvIatla~~~~~~~~~v~IvS~-----DkDl 75 (95)
++|.+.|..+|+.+.... +-+.+.+..++..........++|.|+ +.|+
T Consensus 43 ~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~~~~D~ 98 (178)
T 3iwt_A 43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDI 98 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCC
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcccCCCCc
Confidence 568899999999976543 445556666666555455678999885 6776
No 43
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A
Probab=76.26 E-value=1.7 Score=30.25 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=36.2
Q ss_pred HHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 28 YLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 28 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.+.+.|. |+..+.+-|.++|=++-+-|..+...|++|+|++
T Consensus 99 ~L~~~L~--gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~Vv~ 139 (200)
T 1x9g_A 99 QVEELLE--DVDNAVVFGIEGHACILQTVADLLDMNKRVFLPK 139 (200)
T ss_dssp HHHHTTT--TCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEG
T ss_pred hHHHHhC--CCCEEEEEEEecCcHHHHHHHHHHhCCCEEEEeC
Confidence 4556666 9999999999999999999999999999999975
No 44
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=72.50 E-value=10 Score=25.46 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=37.3
Q ss_pred HHHHHHHHHHCCCcEEecC--CcchhHHHHHHHHHhhhCCCcEEEEc-----CCCCc--cccc
Q 034412 26 LQYLKASIKAMSIKVIEVP--GVEADDVIGKLAVRSVDDGFKIQVVS-----PNKDS--QILS 79 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~--g~EADDvIatla~~~~~~~~~v~IvS-----~DkDl--QLv~ 79 (95)
-+.+.+.|..+|+.+.... +-+.|++..++.....+.+..++|.| +++|+ +.+.
T Consensus 30 ~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~~D~t~ea~~ 92 (172)
T 1mkz_A 30 GHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALL 92 (172)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSSTTCCHHHHHG
T ss_pred HHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCCCHHHHHH
Confidence 3568889999999865532 45666777777655443367899998 57787 5554
No 45
>4az3_B Lysosomal protective protein 20 kDa chain; hydrolase, drug discovery, carboxypeptidase, cardiovascular; HET: NAG S35; 2.04A {Homo sapiens} PDB: 4az0_B*
Probab=70.01 E-value=2.1 Score=28.36 Aligned_cols=19 Identities=11% Similarity=0.109 Sum_probs=15.6
Q ss_pred HHhhhCCCcEEEEcCCCCc
Q 034412 57 VRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 57 ~~~~~~~~~v~IvS~DkDl 75 (95)
....+.|.+|+|+|+|.|+
T Consensus 57 ~~Ll~~girVliy~Gd~D~ 75 (155)
T 4az3_B 57 KLLSSQKYQILLYNGDVDM 75 (155)
T ss_dssp HHHHTCCCEEEEEEETTCS
T ss_pred HHHHHcCceEEEEecccCc
Confidence 3445578999999999997
No 46
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=69.60 E-value=7.7 Score=26.08 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=31.6
Q ss_pred cchhHHHHHHHHHhhhCCCcEEEEcCCCCc-cccc-CCeEEEEeccCCc
Q 034412 46 VEADDVIGKLAVRSVDDGFKIQVVSPNKDS-QILS-HSLCLLRIAPRGF 92 (95)
Q Consensus 46 ~EADDvIatla~~~~~~~~~v~IvS~DkDl-QLv~-~~v~v~~~~k~~~ 92 (95)
-|.|+.|-.+|... ...++|+|.-+ +... .+|.|..+..++.
T Consensus 92 ~~vD~~l~~lA~~~-----~a~lvTnD~~l~kvA~~~GI~V~~l~~~~~ 135 (142)
T 3i8o_A 92 GEIDAMIRKVAKET-----NSILLTSDWIQYNLAKAQGIEAYFLEAAEE 135 (142)
T ss_dssp SSHHHHHHHHHHHT-----TCEEEESCHHHHHHHHHTTCCEEECCCCCC
T ss_pred CcHHHHHHHHHHHh-----CCEEEcCCHHHHHHHHHcCCEEEEeccccc
Confidence 48899888888654 46799999999 6554 7898888755444
No 47
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=69.53 E-value=12 Score=25.32 Aligned_cols=55 Identities=9% Similarity=0.064 Sum_probs=37.6
Q ss_pred HHHHHHHHHHCCCcEEecC--CcchhHHHHHHHHHhhhCCCcEEEEcC-----CCCc--ccccC
Q 034412 26 LQYLKASIKAMSIKVIEVP--GVEADDVIGKLAVRSVDDGFKIQVVSP-----NKDS--QILSH 80 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~--g~EADDvIatla~~~~~~~~~v~IvS~-----DkDl--QLv~~ 80 (95)
-+.+...|..+|+.+.... .-+.+++..++.....+.+..++|.|+ ++|+ +.+.+
T Consensus 42 ~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s~g~~D~t~eal~~ 105 (178)
T 2pjk_A 42 GDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDITVETIRK 105 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCHHHHHGG
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcchHHHHHH
Confidence 3568888999999866532 445666777766554433589999884 8888 55543
No 48
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=66.14 E-value=16 Score=25.34 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=30.4
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHh
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRS 59 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~ 59 (95)
...++++++.||+.+....++.|.++.-.|....
T Consensus 71 ~~~L~~~F~~LGF~V~~~~dlt~~em~~~l~~~~ 104 (179)
T 3p45_A 71 RDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVS 104 (179)
T ss_dssp HHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHh
Confidence 5668999999999999999999999999988743
No 49
>3tnd_A TRNA(FMet)-specific endonuclease VAPC; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}
Probab=65.76 E-value=3 Score=25.97 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHhhhCCCcEEEEcCC-CCc-ccccCCeEEE
Q 034412 48 ADDVIGKLAVRSVDDGFKIQVVSPN-KDS-QILSHSLCLL 85 (95)
Q Consensus 48 ADDvIatla~~~~~~~~~v~IvS~D-kDl-QLv~~~v~v~ 85 (95)
+|=+|+..|. ..| ..++|.| +|| .+ +++.+.
T Consensus 97 ~D~lIaA~A~---~~~--~~lvT~d~~dF~~~--~gl~v~ 129 (132)
T 3tnd_A 97 FDQMIAGHAR---SRG--LIIVTNNTREFERV--GGLRTE 129 (132)
T ss_dssp HHHHHHHHHH---HTT--CEEEESCCHHHHTS--TTCCEE
T ss_pred hHHHHHHHHH---HcC--CEEEECCHHHhCCC--CCCeec
Confidence 4555554443 233 4689999 999 65 344443
No 50
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=65.71 E-value=13 Score=24.73 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=36.2
Q ss_pred HHHHHHHHHHCCCcEEecC--CcchhHHHHHHHHHhhhCCCcEEEEc-----CCCCc--cccc
Q 034412 26 LQYLKASIKAMSIKVIEVP--GVEADDVIGKLAVRSVDDGFKIQVVS-----PNKDS--QILS 79 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~--g~EADDvIatla~~~~~~~~~v~IvS-----~DkDl--QLv~ 79 (95)
-+.+.+.|..+|+.+.... +-+.+++..++.......+..++|.| +++|+ +.+.
T Consensus 33 ~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~~ 95 (169)
T 1y5e_A 33 GQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITKRDVTIEAVS 95 (169)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSSTTCCHHHHHH
T ss_pred HHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCCcHHHHH
Confidence 3568888999999865532 44556677776654432367899988 46687 5554
No 51
>1gxs_B P-(S)-hydroxymandelonitrIle lyase chain B; inhibitor complex, cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum bicolor} SCOP: c.69.1.5
Probab=63.24 E-value=4.2 Score=27.12 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.6
Q ss_pred hCCCcEEEEcCCCCc
Q 034412 61 DDGFKIQVVSPNKDS 75 (95)
Q Consensus 61 ~~~~~v~IvS~DkDl 75 (95)
+.|.+|+|+|+|.|+
T Consensus 64 ~~girVliysGd~D~ 78 (158)
T 1gxs_B 64 QAGLRVWVYSGDTDS 78 (158)
T ss_dssp HTTCEEEEEEETTCS
T ss_pred HcCCeEEEEecccCc
Confidence 468999999999998
No 52
>1whs_B Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1wht_B* 1bcs_B* 1bcr_B* 3sc2_B*
Probab=61.42 E-value=4.7 Score=26.70 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=13.6
Q ss_pred hCCCcEEEEcCCCCc
Q 034412 61 DDGFKIQVVSPNKDS 75 (95)
Q Consensus 61 ~~~~~v~IvS~DkDl 75 (95)
+.|.+|+|+|+|.|+
T Consensus 62 ~~girvlIy~Gd~D~ 76 (153)
T 1whs_B 62 AAGLRIWVFSGDTDA 76 (153)
T ss_dssp HTTCEEEEEEETTCS
T ss_pred hcCceEEEEecCcCc
Confidence 468999999999998
No 53
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=61.15 E-value=16 Score=24.17 Aligned_cols=54 Identities=9% Similarity=0.131 Sum_probs=37.0
Q ss_pred HHHHHHHHHCCCcEEecC--CcchhHHHHHHHHHhhhCCCcEEEEc-----CCCCc--ccccC
Q 034412 27 QYLKASIKAMSIKVIEVP--GVEADDVIGKLAVRSVDDGFKIQVVS-----PNKDS--QILSH 80 (95)
Q Consensus 27 ~~i~~~l~~~gi~~~~~~--g~EADDvIatla~~~~~~~~~v~IvS-----~DkDl--QLv~~ 80 (95)
+.+...|..+|+.+.... .-+.+++..++.......+..++|.| +++|+ +.+.+
T Consensus 24 ~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~~~ 86 (164)
T 2is8_A 24 LAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAPRDRTPEATRE 86 (164)
T ss_dssp HHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHT
T ss_pred HHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCChHHHHHH
Confidence 457888899998765432 44566677777655443367899988 67888 65554
No 54
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans}
Probab=60.03 E-value=6.7 Score=26.90 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=34.9
Q ss_pred HHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 29 LKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 29 i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
+.+.|.. +..+..-|.++|=++.+-+..+...|++|+|++
T Consensus 94 L~~~L~~--i~~lvi~G~~T~~CV~~Ta~da~~~Gy~V~vv~ 133 (199)
T 2b34_A 94 TEDTLKK--VQNVILVGIEAHVCVLQTTYDLLERGLNVHVVV 133 (199)
T ss_dssp GHHHHTT--CSEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHcC--CCEEEEEEEecCHHHHHHHHHHHHCCCEEEEeC
Confidence 5556666 899999999999999999999999999999875
No 55
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=59.02 E-value=17 Score=24.92 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhh
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~ 60 (95)
...++++++.||+.+....+..+.++...+...+.
T Consensus 71 ~~~L~~~F~~LgF~V~v~~dlt~~em~~~l~~~s~ 105 (173)
T 2ql9_A 71 AEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASE 105 (173)
T ss_dssp HHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 56688899999999999999999999998876443
No 56
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=58.91 E-value=26 Score=23.63 Aligned_cols=34 Identities=6% Similarity=0.148 Sum_probs=29.9
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHh
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRS 59 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~ 59 (95)
...++++++.||+.+....+.-+.++...+....
T Consensus 57 ~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~ 90 (164)
T 1qtn_A 57 AGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQ 90 (164)
T ss_dssp HHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHH
Confidence 5668889999999999999999999999887653
No 57
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=57.18 E-value=29 Score=23.65 Aligned_cols=52 Identities=12% Similarity=-0.035 Sum_probs=37.3
Q ss_pred HHHHHHHHHHCCCcEEecC--CcchhHHHHHHHHHhhhCCCcEEEEcC-----CCCc--cccc
Q 034412 26 LQYLKASIKAMSIKVIEVP--GVEADDVIGKLAVRSVDDGFKIQVVSP-----NKDS--QILS 79 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~--g~EADDvIatla~~~~~~~~~v~IvS~-----DkDl--QLv~ 79 (95)
-+++.+.|..+|+.+.... +-+.+.+..++...... ..++|.|+ ++|+ +.+.
T Consensus 25 ~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~--~DlVittGG~g~~~~D~T~ea~a 85 (172)
T 3kbq_A 25 AAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEV--SDLVVSSGGLGPTFDDMTVEGFA 85 (172)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHH--CSEEEEESCCSSSTTCCHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhc--CCEEEEcCCCcCCcccchHHHHH
Confidence 4568888999999876543 55667788877765543 68999886 7887 5543
No 58
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=56.41 E-value=11 Score=26.03 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=36.3
Q ss_pred HHHHHHHCCCcEEecCCcc--------hhHHHHHHHHHhhhCCCcEEEEcCCCCc-ccc
Q 034412 29 LKASIKAMSIKVIEVPGVE--------ADDVIGKLAVRSVDDGFKIQVVSPNKDS-QIL 78 (95)
Q Consensus 29 i~~~l~~~gi~~~~~~g~E--------ADDvIatla~~~~~~~~~v~IvS~DkDl-QLv 78 (95)
+..+...+..+++-++|.. .++++++++......|+.|+..++..+- +++
T Consensus 72 ~~~l~~~~~~~~lliE~d~~~~~~~~~~~~i~~~l~~~~~~~~~~vi~t~s~~eta~~l 130 (219)
T 2bgw_A 72 ASRLAEHYETVFIIVEGPPVPRRYRGRERSLYAAMAALQLDYGIRLMNTMDPKGTALVI 130 (219)
T ss_dssp HHHHHHHCSEEEEEEESCSSCGGGTTTHHHHHHHHHHHHHHSCCEEEEESSHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEEecCccccccCCHHHHHHHHHHHHHHCCceEEEcCCHHHHHHHH
Confidence 3334445677777776654 7899999998877788888888887776 654
No 59
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=54.68 E-value=18 Score=24.48 Aligned_cols=35 Identities=17% Similarity=0.058 Sum_probs=30.4
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhh
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~ 60 (95)
...++++++.||+.+....+.-+.++...+...+.
T Consensus 60 ~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 60 HSTLVTLFKLLGYDVHVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp HHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHhhh
Confidence 56688899999999999999999999998876544
No 60
>3dbo_B Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis}
Probab=53.95 E-value=21 Score=23.34 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=18.1
Q ss_pred chhHHHHHHHHHhhhCCCcEEEEcCCCCc-ccc
Q 034412 47 EADDVIGKLAVRSVDDGFKIQVVSPNKDS-QIL 78 (95)
Q Consensus 47 EADDvIatla~~~~~~~~~v~IvS~DkDl-QLv 78 (95)
-+|=+||..|.. .|. .++|.|+|| .+-
T Consensus 113 ~~D~lIaA~A~~---~~~--~LvT~d~dF~~i~ 140 (150)
T 3dbo_B 113 INDLWIAAVAAS---RAL--PVITQDDDFAALD 140 (150)
T ss_dssp HHHHHHHHHHHH---TTC--CEEESSSSGGGGT
T ss_pred CchHHHHHHHHH---CCC--EEEECChhhhhCC
Confidence 467777765542 333 489999999 654
No 61
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=52.20 E-value=28 Score=25.02 Aligned_cols=48 Identities=19% Similarity=0.134 Sum_probs=37.2
Q ss_pred HhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcC
Q 034412 24 QGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSP 71 (95)
Q Consensus 24 ~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~ 71 (95)
.++..+.+.++.-+++++-.+..-.+.++-+++..+.+.|.+|+++++
T Consensus 199 ~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~l~~~a~~~g~~v~~l~~ 246 (282)
T 3mfq_A 199 SDMIETVNLIIDHNIKAIFTESTTNPERMKKLQEAVKAKGGQVEVVTG 246 (282)
T ss_dssp HHHHHHHHHHHHHTCCEEECBTTSCTHHHHHHHHHHHTTSCCCEEETT
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHhcCCceEEecc
Confidence 456666667777899988888777788888888777778888888753
No 62
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=51.26 E-value=32 Score=24.71 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhh
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~ 60 (95)
...+.++|+.||+.+....++-++++...|...+.
T Consensus 48 ~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 82 (277)
T 1nw9_B 48 CEKLRRRFSSLHFMVEVKGDLTAKKMVLALLELAR 82 (277)
T ss_dssp HHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHH
Confidence 56688899999999999999999999998876543
No 63
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=51.26 E-value=32 Score=22.70 Aligned_cols=35 Identities=9% Similarity=0.185 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhh
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~ 60 (95)
...++++++.||+.+....+.-+.++...+...+.
T Consensus 43 ~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 77 (146)
T 2dko_A 43 AANLRETFRNLKYEVRNKNDLTREEIVELMRDVSK 77 (146)
T ss_dssp HHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHH
Confidence 45688899999999999999999999998876544
No 64
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=51.07 E-value=9.7 Score=24.67 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=25.4
Q ss_pred chhHHHHHHHHHhhhCCCcEEEEcCCCCc--cc
Q 034412 47 EADDVIGKLAVRSVDDGFKIQVVSPNKDS--QI 77 (95)
Q Consensus 47 EADDvIatla~~~~~~~~~v~IvS~DkDl--QL 77 (95)
|-.|++- ++..+.+.|.+|.|+|++..- ||
T Consensus 72 ~~~~~~e-l~e~~~~~G~~V~ivs~~~~~G~qL 103 (124)
T 1x52_A 72 TRSRYVR-LVDSVKENAGTVRIFSSLHVSGEQL 103 (124)
T ss_dssp HHHHHHH-HHHHHHHTTCEEEEECSSSHHHHHH
T ss_pred HHHHHHH-HHHHHHHcCCEEEEECCCCccHHHH
Confidence 4567888 888888899999999999887 66
No 65
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=50.67 E-value=39 Score=23.01 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=36.1
Q ss_pred HHHHHHHHHH---CCCcEEecC--CcchhHHHHHHHHHhhhCCCcEEEEc-----CCCCc--cccc
Q 034412 26 LQYLKASIKA---MSIKVIEVP--GVEADDVIGKLAVRSVDDGFKIQVVS-----PNKDS--QILS 79 (95)
Q Consensus 26 ~~~i~~~l~~---~gi~~~~~~--g~EADDvIatla~~~~~~~~~v~IvS-----~DkDl--QLv~ 79 (95)
-+.+...|.. +|+.+.... .-+.+++...+.......+..++|.| +++|+ +.+.
T Consensus 36 ~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttGGtg~g~~D~t~eal~ 101 (189)
T 1jlj_A 36 GINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATK 101 (189)
T ss_dssp HHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHH
T ss_pred HHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCcccHHHHHH
Confidence 3557888887 898765432 44566677777665443467899988 57787 5544
No 66
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=50.58 E-value=12 Score=23.98 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHhhhCCCcEEEEcCCCCc-c
Q 034412 48 ADDVIGKLAVRSVDDGFKIQVVSPNKDS-Q 76 (95)
Q Consensus 48 ADDvIatla~~~~~~~~~v~IvS~DkDl-Q 76 (95)
+|=+|+..|... | +.|+|.|+|| +
T Consensus 102 ~Dali~A~A~~~---g--~~l~T~D~dF~~ 126 (156)
T 1w8i_A 102 TDAISEVVAEEL---K--LKLISYDSRFSL 126 (156)
T ss_dssp HHHHHHHHHHHH---T--CEEECSCTTCSS
T ss_pred hHHHHHHHHHHc---C--CEEEEeCcccCc
Confidence 344555444332 3 3899999999 8
No 67
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=49.21 E-value=25 Score=23.43 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=34.4
Q ss_pred HHHHHHHHHCCCcEEecC--CcchhHHHHHHHHHhhhCCCcEEEEc-----CCCCc--ccccC
Q 034412 27 QYLKASIKAMSIKVIEVP--GVEADDVIGKLAVRSVDDGFKIQVVS-----PNKDS--QILSH 80 (95)
Q Consensus 27 ~~i~~~l~~~gi~~~~~~--g~EADDvIatla~~~~~~~~~v~IvS-----~DkDl--QLv~~ 80 (95)
+.+..++..+|+.+.... .-+ +.+..++.... +.+..++|.| +++|+ +.+.+
T Consensus 30 ~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~-~~~~DlVittGG~s~g~~D~t~eal~~ 90 (164)
T 3pzy_A 30 PIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAI-DDDVDVILTSGGTGIAPTDSTPDQTVA 90 (164)
T ss_dssp HHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHH-HTTCSEEEEESCCSSSTTCCHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHH-hCCCCEEEECCCCCCCCCccHHHHHHH
Confidence 568888999998765432 233 55666665443 3467899988 58888 55543
No 68
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=49.06 E-value=29 Score=25.20 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=30.2
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHh
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRS 59 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~ 59 (95)
...+.++|+.||+.+....++-++++...|....
T Consensus 48 ~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~ 81 (278)
T 3od5_A 48 RDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVS 81 (278)
T ss_dssp HHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHH
Confidence 5668899999999999999999999999988743
No 69
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=48.76 E-value=30 Score=25.03 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=30.4
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhh
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~ 60 (95)
-..+.++|+.||+.+....+..++++..++..-..
T Consensus 58 a~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~ 92 (272)
T 1m72_A 58 SDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAE 92 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHH
Confidence 46688899999999999999999999998876543
No 70
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=48.35 E-value=34 Score=24.73 Aligned_cols=35 Identities=6% Similarity=0.161 Sum_probs=30.4
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhh
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~ 60 (95)
...+.++|+.||+.+....++-++++...|..-..
T Consensus 51 ~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 51 AGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp HHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 56688999999999999999999999998886543
No 71
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A
Probab=47.99 E-value=3.7 Score=27.96 Aligned_cols=42 Identities=12% Similarity=0.151 Sum_probs=29.8
Q ss_pred CcchhHHHHHHHHHhhhC----------------CCcEEEEcCCCCc--ccccCCeEEEE
Q 034412 45 GVEADDVIGKLAVRSVDD----------------GFKIQVVSPNKDS--QILSHSLCLLR 86 (95)
Q Consensus 45 g~EADDvIatla~~~~~~----------------~~~v~IvS~DkDl--QLv~~~v~v~~ 86 (95)
+-.+||-|=.+|..+.+. +.+|+++|.|+.+ .....++.+.+
T Consensus 116 ~~~~D~~IL~~a~~l~~~~~~~~~~~~~~~~~~~~~~vvLvTnD~nLr~KA~~~Gi~~~~ 175 (186)
T 2dok_A 116 LGNNDDLILSCCLHYCKDKAKDFMPASKEEPIRLLREVVLLTDDRNLRVKALTRNVPVRD 175 (186)
T ss_dssp -CCHHHHHHHHHHTTCCCCGGGGCCC---CCCEEEEEEEEECCCHHHHHHHHHTTCCEEC
T ss_pred CCCccHHHHHHHHHHHHhcccccccccccccccCCCcEEEEeCcHHHHHHHHHCCCeeCc
Confidence 457899998888765432 3479999999998 44456666654
No 72
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=46.38 E-value=62 Score=21.47 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=39.6
Q ss_pred CChhhHHhHHHHHHHHHHCCCcEEecC-------CcchhHHHHHHHHHhhhCCCcEEEE
Q 034412 18 TPDTMVQGLQYLKASIKAMSIKVIEVP-------GVEADDVIGKLAVRSVDDGFKIQVV 69 (95)
Q Consensus 18 ~p~~l~~q~~~i~~~l~~~gi~~~~~~-------g~EADDvIatla~~~~~~~~~v~Iv 69 (95)
..+.|...+..+.+.++..|+..+.+| |+.-|++-..+.......+.+|+|+
T Consensus 100 ~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtGi~G~p~~~v~~ii~~~~~~~~i~v~Vy 158 (160)
T 2jyc_A 100 TYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEATDIKITVY 158 (160)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEESCCSSCSSSCHHHHHHHHHHHHTTSCCEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEE
Confidence 345677778888888888898877765 7888888888777776667777776
No 73
>2g40_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Deinococcus radiodurans} SCOP: c.124.1.7
Probab=46.02 E-value=52 Score=23.14 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCC
Q 034412 25 GLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPN 72 (95)
Q Consensus 25 q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~D 72 (95)
.++.+.+-++..|-.+...+.-||-++|+.+.. |.+-++++.+
T Consensus 56 lle~F~~~~~~~g~~V~~a~~~e~~~~i~~i~~-----~~~~vv~~~~ 98 (224)
T 2g40_A 56 ILHQFEDRILDYGAAYTHVSAAELPGAIAKALG-----NARRVIVPAG 98 (224)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHT-----TCCEEECCTT
T ss_pred HHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHh-----CCCeEEECCC
Confidence 356677778889999988876666666655543 5666777754
No 74
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=45.75 E-value=15 Score=27.49 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=22.0
Q ss_pred hcCCCCCC--h--hhHHhHHHHHHHHHHCCCcEEecCC
Q 034412 12 KNNRPPTP--D--TMVQGLQYLKASIKAMSIKVIEVPG 45 (95)
Q Consensus 12 KanR~~~p--~--~l~~q~~~i~~~l~~~gi~~~~~~g 45 (95)
||||..+- . .+.+.|..++++++.+|++++...-
T Consensus 83 KapRTs~~sf~Glg~~~GL~~L~~~~~e~GLpv~Tev~ 120 (298)
T 3fs2_A 83 KANRTSLKAARGIGLEKALEVFSDLKKEYGFPVLTDIH 120 (298)
T ss_dssp CCC---------CCHHHHHHHHHHHHHHHCCCEEEECC
T ss_pred cCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 34897542 1 1457899999999999999987653
No 75
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=45.63 E-value=57 Score=21.43 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=32.9
Q ss_pred HHHHHHHHHC-----CCcEEec--CCcchhHHHHHHHHHhhhCCCcEEEEc-----CCCCc--cccc
Q 034412 27 QYLKASIKAM-----SIKVIEV--PGVEADDVIGKLAVRSVDDGFKIQVVS-----PNKDS--QILS 79 (95)
Q Consensus 27 ~~i~~~l~~~-----gi~~~~~--~g~EADDvIatla~~~~~~~~~v~IvS-----~DkDl--QLv~ 79 (95)
+.+.++++.. |+.+... =.-+.+++..++.......+..++|.| +++|+ +.+.
T Consensus 28 ~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~~a~~ 94 (167)
T 1uuy_A 28 PRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTGFTPRDVTPEATK 94 (167)
T ss_dssp HHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHH
T ss_pred HHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCchHHHHH
Confidence 3466677776 8876543 244555676766654432467899998 57787 4443
No 76
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=45.55 E-value=37 Score=24.11 Aligned_cols=36 Identities=8% Similarity=0.205 Sum_probs=30.7
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhh
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~ 61 (95)
-..+.++|+.||+.+....+..++++..++..-..+
T Consensus 43 ~~~l~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~ 78 (250)
T 2j32_A 43 AANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKE 78 (250)
T ss_dssp HHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHh
Confidence 456888999999999999999999999988765443
No 77
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=45.00 E-value=19 Score=25.08 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=35.1
Q ss_pred cccChhhhcCCCCCChh-------------hHHhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHH
Q 034412 5 HTLYPSYKNNRPPTPDT-------------MVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAV 57 (95)
Q Consensus 5 ~~l~p~YKanR~~~p~~-------------l~~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~ 57 (95)
..+|+.|+++.+.++.+ +...|...+++|..|+ ++ +|-=||+|-.|+.-
T Consensus 102 T~FF~~yq~qhPd~~~ee~L~~Fm~lIgGGiEqGF~EArdIL~GL~--Vl--eG~IA~~IdkTY~L 163 (175)
T 3sjr_A 102 EILMELYRQQHPDWTAPAIRQAFAPLARAGLERGYQEACQVLRQLN--VY--TPAVAGQLQGLLLL 163 (175)
T ss_dssp HHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc--cc--CcHHHHhHHHHHHH
Confidence 35789999999987754 2334666778887554 43 77778999888764
No 78
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=44.88 E-value=37 Score=24.70 Aligned_cols=35 Identities=9% Similarity=0.185 Sum_probs=30.5
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhh
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~ 60 (95)
...+.++|+.||+.+....++-++++...|..-..
T Consensus 71 ~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~ 105 (277)
T 4ehd_A 71 AANLRETFRNLKYEVRNKNDLTREEIVELMRDVSK 105 (277)
T ss_dssp HHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHh
Confidence 45688999999999999999999999998886543
No 79
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=44.55 E-value=38 Score=23.57 Aligned_cols=36 Identities=31% Similarity=0.205 Sum_probs=25.5
Q ss_pred HHHCCCcEEecCCc--------chhHHHHHHHHHhhhCCCcEEEEcCCC
Q 034412 33 IKAMSIKVIEVPGV--------EADDVIGKLAVRSVDDGFKIQVVSPNK 73 (95)
Q Consensus 33 l~~~gi~~~~~~g~--------EADDvIatla~~~~~~~~~v~IvS~Dk 73 (95)
|...|+-++...+. .+|=.|-.+|... ..+|||+|+
T Consensus 91 L~~~g~l~~TPs~~~~g~~~~~ydD~~il~~A~~~-----~g~IVSND~ 134 (185)
T 3v32_B 91 LEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYES-----DGIVVSNDT 134 (185)
T ss_dssp HHHTTCEEEECCCC-------CCHHHHHHHHHHHT-----TCEEECSCC
T ss_pred HHHCCCEEECCCcccCCCcccCccHHHHHHHHHHc-----CCEEEeCcc
Confidence 34469888888874 4677787777543 457999985
No 80
>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A {Homo sapiens} PDB: 3bd0_A
Probab=43.90 E-value=29 Score=25.19 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=27.1
Q ss_pred hHHhHHHHHHHHH----HCCCcEEecCCcchh---HHHHHHHHHhhhCCCcEEEEcCC
Q 034412 22 MVQGLQYLKASIK----AMSIKVIEVPGVEAD---DVIGKLAVRSVDDGFKIQVVSPN 72 (95)
Q Consensus 22 l~~q~~~i~~~l~----~~gi~~~~~~g~EAD---DvIatla~~~~~~~~~v~IvS~D 72 (95)
+.-|+|+|+.++. ..-|--+.+...-.+ .+-..|+....+. ..++|+|+|
T Consensus 129 lEv~LPfL~~~~~~~~~~~~IVPI~vg~~~~~~~~~~g~~l~~~~~~~-~~l~V~SsD 185 (293)
T 3bcz_A 129 IEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADP-SNLFVVSSD 185 (293)
T ss_dssp TGGGHHHHHHHTGGGTTSCEEEEEEECCCCHHHHHHHHHHHHHHHTCT-TEEEEEECC
T ss_pred EEeeHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHhCC-CeEEEEeCC
Confidence 5569999998764 222333344443333 3333444333332 467789987
No 81
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=43.52 E-value=39 Score=23.26 Aligned_cols=49 Identities=10% Similarity=0.045 Sum_probs=31.3
Q ss_pred HHHHHHHHHCCCc--EEe--cCCcchhHHHHHHHHHhhhCCCcEEEEc-----CCCCc
Q 034412 27 QYLKASIKAMSIK--VIE--VPGVEADDVIGKLAVRSVDDGFKIQVVS-----PNKDS 75 (95)
Q Consensus 27 ~~i~~~l~~~gi~--~~~--~~g~EADDvIatla~~~~~~~~~v~IvS-----~DkDl 75 (95)
+.+.+.|..+|+. +.. .=.-+.+.+..++.......+..++|.| +++|+
T Consensus 26 ~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg~g~~D~ 83 (195)
T 1di6_A 26 PALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDV 83 (195)
T ss_dssp HHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCC
T ss_pred HHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcc
Confidence 4578888888876 222 2233445566666654443468999998 67787
No 82
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=43.40 E-value=33 Score=24.53 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhh
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~ 60 (95)
...+.++|+.||+.+....++.++++...+..-..
T Consensus 46 ~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~ 80 (259)
T 3sir_A 46 CENLTRVLKQLDFEVTVYKDCRYKDILRTIEYSAS 80 (259)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 45688899999999999999999999999887543
No 83
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=43.14 E-value=66 Score=20.86 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=39.2
Q ss_pred CChhhHHhHHHHHHHHHHCCCcEEecC-------CcchhHHHHHHHHHhhhCCCcEEEE
Q 034412 18 TPDTMVQGLQYLKASIKAMSIKVIEVP-------GVEADDVIGKLAVRSVDDGFKIQVV 69 (95)
Q Consensus 18 ~p~~l~~q~~~i~~~l~~~gi~~~~~~-------g~EADDvIatla~~~~~~~~~v~Iv 69 (95)
..+.|...+..+.+.++..|+..+.+| |+.-+++-..+.......+.+|+|+
T Consensus 89 ~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~~~~~~~~i~v~Vy 147 (149)
T 2eee_A 89 TYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEATDIKITVY 147 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEECCCCCCTTTTCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHhccCCceEEEE
Confidence 345677788888888888888888765 7788888887777666666777776
No 84
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=42.83 E-value=29 Score=22.88 Aligned_cols=58 Identities=24% Similarity=0.272 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHCCCcEEe--cCCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc-cccc-CCeEEEEe
Q 034412 25 GLQYLKASIKAMSIKVIE--VPGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS-QILS-HSLCLLRI 87 (95)
Q Consensus 25 q~~~i~~~l~~~gi~~~~--~~g~EADDvIatla~~~~~~~~~v~IvS~DkDl-QLv~-~~v~v~~~ 87 (95)
.+..++.+.+..++.++. .++-|+|+.|=.+|+.. .++++|+|.=+ +... .+|.|+++
T Consensus 61 gL~iL~~L~~~~~vei~~~~~~~~~vD~~ll~lA~~~-----~~~lvTnD~~L~kvA~~~GI~Vl~l 122 (134)
T 3ix7_A 61 GLETLERLREAAPLEVLETTPKGESVDEKLLFLARDL-----EAALVTNDHALLQMARIYGVKALSI 122 (134)
T ss_dssp HHHHHHHHHHHSCEEEECCCCSCSSHHHHHHHHHHHT-----TCEEEESCHHHHHHHHHTTCCEEEH
T ss_pred HHHHHHHHHhcCCEEEeCCCCCcccHHHHHHHHHHHh-----CCEEEeCCHHHHHHHHHCCCeEEeh
Confidence 345556555555544442 23568999999888754 46899999998 5544 78888764
No 85
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=42.43 E-value=59 Score=21.71 Aligned_cols=52 Identities=15% Similarity=0.161 Sum_probs=32.7
Q ss_pred HHHHHHHH---HCCCcEEecC--CcchhHHHHHHHHHhhhCCCcEEEEc-----CCCCc--cccc
Q 034412 27 QYLKASIK---AMSIKVIEVP--GVEADDVIGKLAVRSVDDGFKIQVVS-----PNKDS--QILS 79 (95)
Q Consensus 27 ~~i~~~l~---~~gi~~~~~~--g~EADDvIatla~~~~~~~~~v~IvS-----~DkDl--QLv~ 79 (95)
+++..++. .+|+.+ ... +-+.+++..++.......+..++|.| +++|+ +.+.
T Consensus 28 ~~l~~~l~~l~~~G~~v-~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~~ 91 (178)
T 2pbq_A 28 KAIIDYLKDVIITPFEV-EYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGPAPRDVTPEATE 91 (178)
T ss_dssp HHHHHHHHHHBCSCCEE-EEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCEE-EEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCchHHHHH
Confidence 45777777 889876 432 33444566666554432367899988 57787 5443
No 86
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=41.33 E-value=26 Score=25.50 Aligned_cols=34 Identities=9% Similarity=0.154 Sum_probs=29.2
Q ss_pred HHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhh
Q 034412 27 QYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60 (95)
Q Consensus 27 ~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~ 60 (95)
..++++|+.||+.+....++-+.++...+..-+.
T Consensus 57 ~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 90 (272)
T 3h11_A 57 ELLRDTFTSLGYEVQKFLHLSMHGISQILGQFAC 90 (272)
T ss_dssp SHHHHHHHHHTEEEEEEESCBHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHh
Confidence 4578889999999999999999999998876443
No 87
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=41.16 E-value=9.9 Score=22.65 Aligned_cols=44 Identities=14% Similarity=0.342 Sum_probs=31.8
Q ss_pred hhhHHhHHHHHHHHHHCCCcEEe-------------------cCCcchhHHHHHHHHHhhhCCCcEE
Q 034412 20 DTMVQGLQYLKASIKAMSIKVIE-------------------VPGVEADDVIGKLAVRSVDDGFKIQ 67 (95)
Q Consensus 20 ~~l~~q~~~i~~~l~~~gi~~~~-------------------~~g~EADDvIatla~~~~~~~~~v~ 67 (95)
.++..+.|.+.++|..+|+..+. ..|...|.+++.|- +.|+.|+
T Consensus 16 ~elv~~~P~~~~vl~~~G~~~l~~p~~~~~~g~~~TL~~aa~~~gid~d~l~~~L~----~~g~~~~ 78 (81)
T 2fi0_A 16 AEVVDKHPEVLEILVELGFKPLANPLMRNTVGRKVSLKQGSKLAGTPMDKIVRTLE----ANGYEVI 78 (81)
T ss_dssp HHHHHHCGGGHHHHTTTTCGGGGSHHHHTTHHHHCBHHHHHHHHTCCHHHHHHHHH----HTTCEEE
T ss_pred HHHHHHCHHHHHHHHHcCCccccCcHHHhhhcccCcHHHHHHHcCCCHHHHHHHHH----HcCCEee
Confidence 46778888899999999988762 35677788777554 3677664
No 88
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=40.72 E-value=37 Score=25.15 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=29.3
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHH
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVR 58 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~ 58 (95)
...+.++|+.||+.+....++-++++...|...
T Consensus 86 ~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f 118 (316)
T 2fp3_A 86 SKSLIHLFQELNFTIFPYGNVNQDQFFKLLTMV 118 (316)
T ss_dssp HHHHHHHHHHTTEEEEEECSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEccCCCHHHHHHHHHHH
Confidence 566888999999999999999999999988754
No 89
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=40.34 E-value=31 Score=25.58 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=25.4
Q ss_pred hcCCCCCC--h--hhHHhHHHHHHHHHHCCCcEEecCC
Q 034412 12 KNNRPPTP--D--TMVQGLQYLKASIKAMSIKVIEVPG 45 (95)
Q Consensus 12 KanR~~~p--~--~l~~q~~~i~~~l~~~gi~~~~~~g 45 (95)
||||..+- . .+.+.|..++++++.+|++++...-
T Consensus 62 KapRTs~~sf~G~g~~~GL~~L~~~~~e~Glp~~Tev~ 99 (285)
T 3sz8_A 62 KANRSSIHSYRGVGLDEGLKIFAEVKARFGVPVITDVH 99 (285)
T ss_dssp CTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCCEEEECC
T ss_pred cCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 34897542 1 2457899999999999999987653
No 90
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=40.26 E-value=71 Score=21.83 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=36.8
Q ss_pred HHHHHHHHHHCCCcEEecC--CcchhHHHHHHHHHhhhCCCcEEEEcC-----CCCc--ccccC
Q 034412 26 LQYLKASIKAMSIKVIEVP--GVEADDVIGKLAVRSVDDGFKIQVVSP-----NKDS--QILSH 80 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~--g~EADDvIatla~~~~~~~~~v~IvS~-----DkDl--QLv~~ 80 (95)
-+.+..++..+|+.+.... .-+.+++..++.... ..+..++|.|+ ++|+ +.+.+
T Consensus 51 ~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~-~~~~DlVIttGGts~g~~D~t~eal~~ 113 (185)
T 3rfq_A 51 GPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAV-IGGVDLVVSVGGTGVTPRDVTPESTRE 113 (185)
T ss_dssp HHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHH-HTTCSEEEEESCCSSSTTCCHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH-hCCCCEEEECCCCCCCCcccHHHHHHH
Confidence 4568888999998866533 345566777666543 34679999885 8888 55543
No 91
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=39.26 E-value=81 Score=21.37 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=29.6
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHh
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRS 59 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~ 59 (95)
-..+.++|+.+|+.+....+.-++++..++..-+
T Consensus 67 a~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~f~ 100 (178)
T 2h54_A 67 ITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFA 100 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHH
Confidence 5668889999999999999999999999887643
No 92
>2h2m_A Protein MURR1, COMM domain-containing protein 1; all alpha-helical, metal transport; NMR {Homo sapiens}
Probab=39.19 E-value=3.4 Score=26.91 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=8.8
Q ss_pred CCChhhHHhHHHHHHHHHH
Q 034412 17 PTPDTMVQGLQYLKASIKA 35 (95)
Q Consensus 17 ~~p~~l~~q~~~i~~~l~~ 35 (95)
-+|+++...+..+..+++.
T Consensus 43 vt~eef~~~~~K~~~lik~ 61 (108)
T 2h2m_A 43 VPPEEFRPFLAKMRGILKS 61 (108)
T ss_dssp SCSSTHHHHHTTTSTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4455554444444444443
No 93
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase; HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A* 2w5x_A* 2iuc_A 2iuc_B
Probab=38.54 E-value=19 Score=26.65 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=21.3
Q ss_pred chhHHHHHHHHHhhhCCCcEEEEcCCC
Q 034412 47 EADDVIGKLAVRSVDDGFKIQVVSPNK 73 (95)
Q Consensus 47 EADDvIatla~~~~~~~~~v~IvS~Dk 73 (95)
+.|+-||.+.....+.|..++|+|+|.
T Consensus 276 ~~D~~vG~il~~L~~~gnTlviftsDh 302 (375)
T 2w5v_A 276 DFDDAIGTALAFAKKDGNTLVIVTSDH 302 (375)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEECcC
Confidence 358888888777776666788999999
No 94
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=38.02 E-value=25 Score=26.05 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=23.9
Q ss_pred cCCCCCC--h--hhHHhHHHHHHHHHHCCCcEEecCC-cchhHHHHH
Q 034412 13 NNRPPTP--D--TMVQGLQYLKASIKAMSIKVIEVPG-VEADDVIGK 54 (95)
Q Consensus 13 anR~~~p--~--~l~~q~~~i~~~l~~~gi~~~~~~g-~EADDvIat 54 (95)
|+|...- . .+.+.|..++++++.+|++++...- .+.=|.++.
T Consensus 60 apRTs~~sf~Glg~~~GL~~L~~~~~e~Glp~~tev~d~~~v~~l~~ 106 (288)
T 3tml_A 60 ANRSSGKSFRGLGMDEGLRILSEVKRQLGLPVLTDVHSIDEIEQVAS 106 (288)
T ss_dssp ------------CHHHHHHHHHHHHHHHCCCEEEECCSGGGHHHHHH
T ss_pred CCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 4887532 1 1457889999999999999987663 333344433
No 95
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=37.28 E-value=38 Score=25.12 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=29.9
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHh
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRS 59 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~ 59 (95)
-..+.++|+.||+.+....++.++++..+|....
T Consensus 86 a~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~ 119 (310)
T 2nn3_C 86 SDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTA 119 (310)
T ss_dssp HHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHH
Confidence 4668889999999999999999999999887654
No 96
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=36.64 E-value=40 Score=21.53 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=29.5
Q ss_pred CCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc
Q 034412 37 SIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 37 gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~DkDl 75 (95)
-+.++..+|+|.-|+.+.+- .+...|+++.++|.+..-
T Consensus 4 ki~il~~~g~~~~e~~~~~~-~l~~ag~~v~~vs~~~~~ 41 (168)
T 3l18_A 4 KVLFLSADGFEDLELIYPLH-RIKEEGHEVYVASFQRGK 41 (168)
T ss_dssp EEEEECCTTBCHHHHHHHHH-HHHHTTCEEEEEESSSEE
T ss_pred EEEEEeCCCccHHHHHHHHH-HHHHCCCEEEEEECCCCE
Confidence 35577889999999988755 455678999999987653
No 97
>3kzs_A Glycosyl hydrolase family 5; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=35.90 E-value=93 Score=24.45 Aligned_cols=55 Identities=15% Similarity=0.004 Sum_probs=36.6
Q ss_pred hhHHhHHHHHHHHHHCCCcEEecCC------------cchhHHHHHHHHHhhhCCCcEEEEcCCCCc
Q 034412 21 TMVQGLQYLKASIKAMSIKVIEVPG------------VEADDVIGKLAVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 21 ~l~~q~~~i~~~l~~~gi~~~~~~g------------~EADDvIatla~~~~~~~~~v~IvS~DkDl 75 (95)
++.+-++.+-+.+.++||....++- -+|...+--++.++...-.-|.++++|.|+
T Consensus 104 ~YF~h~d~~I~~a~~~Gi~~~Lv~~Wg~~v~~~~m~~e~~~~Y~ryl~~Ry~~~~NiiW~lgGD~~~ 170 (463)
T 3kzs_A 104 GYWDHMDYIIRTAAKKGLYIGMVCIWGSPVSHGEMNVDQAKAYGKFLAERYKDEPNIIWFIGGDIRG 170 (463)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEESSCHHHHHTTSCCHHHHHHHHHHHHHHHTTCSSEEEEEESSSCT
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEEeCCccccCCCCHHHHHHHHHHHHHHhccCCCCEEEeCCCCCC
Confidence 6777777777788889998765442 223334444555555333358899999997
No 98
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=35.67 E-value=62 Score=21.29 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=32.8
Q ss_pred HHHHHH----HHHCCCcEEec--CCcchhHHHHHHHHHhhhCCCcEEEEc-----CCCCc--ccccC
Q 034412 27 QYLKAS----IKAMSIKVIEV--PGVEADDVIGKLAVRSVDDGFKIQVVS-----PNKDS--QILSH 80 (95)
Q Consensus 27 ~~i~~~----l~~~gi~~~~~--~g~EADDvIatla~~~~~~~~~v~IvS-----~DkDl--QLv~~ 80 (95)
+.+.+. +..+|+.+... =+-+.|++..++.... +.+..++|.| +++|+ +.+.+
T Consensus 28 ~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~-~~~~DlVittGG~g~~~~D~t~ea~~~ 93 (167)
T 2g2c_A 28 PLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATAL-KQGARFIITAGGTGIRAKNQTPEATAS 93 (167)
T ss_dssp HHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHH-HTTCSEEEEESCCSSSTTCCHHHHHHT
T ss_pred HHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHH-hCCCCEEEECCCCCCCCCcChHHHHHH
Confidence 457777 88899876543 2445666777766544 3347899988 67788 55544
No 99
>1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5
Probab=35.54 E-value=17 Score=28.26 Aligned_cols=13 Identities=15% Similarity=0.302 Sum_probs=12.5
Q ss_pred CCcEEEEcCCCCc
Q 034412 63 GFKIQVVSPNKDS 75 (95)
Q Consensus 63 ~~~v~IvS~DkDl 75 (95)
|.+|+|+|+|.|+
T Consensus 361 girVlIYsGD~D~ 373 (452)
T 1ivy_A 361 KYQILLYNGDVDM 373 (452)
T ss_dssp CCEEEEEEETTCS
T ss_pred CceEEEEeCCCCc
Confidence 8999999999998
No 100
>3h87_A Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=34.64 E-value=21 Score=23.67 Aligned_cols=27 Identities=30% Similarity=0.226 Sum_probs=17.6
Q ss_pred chhHHHHHHHHHhhhCCCcEEEEcCCCCc-ccc
Q 034412 47 EADDVIGKLAVRSVDDGFKIQVVSPNKDS-QIL 78 (95)
Q Consensus 47 EADDvIatla~~~~~~~~~v~IvS~DkDl-QLv 78 (95)
-+|=+||+.|... ...++|.|+|| .+-
T Consensus 112 ~~D~lIAAtA~~~-----gl~LvT~d~dF~~i~ 139 (156)
T 3h87_A 112 IPDLLIAATAELS-----GLTVLHVDKDFDAIA 139 (156)
T ss_dssp HHHHHHHHHHHHH-----TCEEEESCTHHHHHH
T ss_pred hhHHHHHHHHHHC-----CCEEEEeChhhhhhh
Confidence 3566777666433 34467999999 543
No 101
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=34.42 E-value=72 Score=22.41 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=25.9
Q ss_pred chhHHHHHHHHHhhhCCCcEEEEcCCCCc-ccccCCeEEEE
Q 034412 47 EADDVIGKLAVRSVDDGFKIQVVSPNKDS-QILSHSLCLLR 86 (95)
Q Consensus 47 EADDvIatla~~~~~~~~~v~IvS~DkDl-QLv~~~v~v~~ 86 (95)
....++..+.. ..+.|..|+++|.|-++ .-+.+++.++.
T Consensus 173 ~~~~l~~~l~~-l~~~g~tii~vtHd~~~~~~~~d~v~~l~ 212 (266)
T 2yz2_A 173 GKTDLLRIVEK-WKTLGKTVILISHDIETVINHVDRVVVLE 212 (266)
T ss_dssp HHHHHHHHHHH-HHHTTCEEEEECSCCTTTGGGCSEEEEEE
T ss_pred HHHHHHHHHHH-HHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 34445555544 33347889999999988 77777776653
No 102
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=34.07 E-value=23 Score=24.29 Aligned_cols=64 Identities=9% Similarity=0.222 Sum_probs=38.2
Q ss_pred hhcCCCCCChhhHHhHHHHHHHHHHCCCcE--Eec-----CCcchhHHHHHHHHHh----hhCCC---cEEEEcCCCC
Q 034412 11 YKNNRPPTPDTMVQGLQYLKASIKAMSIKV--IEV-----PGVEADDVIGKLAVRS----VDDGF---KIQVVSPNKD 74 (95)
Q Consensus 11 YKanR~~~p~~l~~q~~~i~~~l~~~gi~~--~~~-----~g~EADDvIatla~~~----~~~~~---~v~IvS~DkD 74 (95)
|..+.+..|.........|.+.|..+|+.. +.. ++++-+++++++.... ...|+ .++.++.|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~i~~~L~~~gV~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~l~~~~gy~~~D~i~~~~~~p 83 (179)
T 1zrr_A 6 FSVKDPQNSLWHSTNAEEIQQQLNAKGVRFERWQADRDLGAAPTAETVIAAYQHAIDKLVAEKGYQSWDVISLRADNP 83 (179)
T ss_dssp ECSSCSSCEEEEECCSHHHHHHHHHTTCCCCCCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCCTTCT
T ss_pred ecCCCcCCcceeeCCHHHHHHHHHHcCcEEEEcCCCCccCCcccHHHHHHHHHHHHHHHHHHhCCCcccEEEEcCCCC
Confidence 333443334333333455667778889987 444 5788899987776553 23454 3566776653
No 103
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=33.59 E-value=46 Score=23.58 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=30.9
Q ss_pred CCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc
Q 034412 37 SIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 37 gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~DkDl 75 (95)
-+.++..+|++.-|+.+.+-.-....+++|.++|.+..-
T Consensus 25 ~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~ 63 (253)
T 3ewn_A 25 QIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDP 63 (253)
T ss_dssp EEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSSC
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCCe
Confidence 456788999999999887665435578999999988764
No 104
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=33.57 E-value=42 Score=23.55 Aligned_cols=57 Identities=11% Similarity=0.212 Sum_probs=35.5
Q ss_pred HHhHHHHHHHHHH-CCCcEEecCCcc--hhHHHHHHHHHhhhCCCcEEEEcCCCCc-cccc
Q 034412 23 VQGLQYLKASIKA-MSIKVIEVPGVE--ADDVIGKLAVRSVDDGFKIQVVSPNKDS-QILS 79 (95)
Q Consensus 23 ~~q~~~i~~~l~~-~gi~~~~~~g~E--ADDvIatla~~~~~~~~~v~IvS~DkDl-QLv~ 79 (95)
..|-..+..++.. --+.++...|=- ==+.+++++....+.|.+|.++++|.-- +-+.
T Consensus 37 ~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~ 97 (189)
T 2l8b_A 37 AGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMK 97 (189)
T ss_dssp HHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHS
T ss_pred ccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHH
Confidence 4556666666654 223333333211 1245777888889999999999999866 4443
No 105
>1cpy_A Serine carboxypeptidase; hydrolase (carboxypeptidase); HET: NAG; 2.60A {Saccharomyces cerevisiae} SCOP: c.69.1.5 PDB: 1wpx_A* 1ysc_A*
Probab=33.37 E-value=17 Score=28.09 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=13.7
Q ss_pred hCCCcEEEEcCCCCc
Q 034412 61 DDGFKIQVVSPNKDS 75 (95)
Q Consensus 61 ~~~~~v~IvS~DkDl 75 (95)
+.|.+|+|+|+|.|+
T Consensus 325 ~~girVlIysGd~D~ 339 (421)
T 1cpy_A 325 NQDLPILVYAGDKDF 339 (421)
T ss_dssp HTTCCEEEEEETTCS
T ss_pred hcCCeEEEEECCccc
Confidence 468999999999998
No 106
>2fe1_A Conserved hypothetical protein PAE0151; PIN domain, structural genomics, unknown function; 2.20A {Pyrobaculum aerophilum} SCOP: c.120.1.1
Probab=33.01 E-value=17 Score=23.44 Aligned_cols=14 Identities=0% Similarity=0.133 Sum_probs=11.1
Q ss_pred EEEEcCCCCc-cccc
Q 034412 66 IQVVSPNKDS-QILS 79 (95)
Q Consensus 66 v~IvS~DkDl-QLv~ 79 (95)
+.++|.|++| +...
T Consensus 137 ~~LvT~D~~l~~~a~ 151 (156)
T 2fe1_A 137 GKLLTLDRQLAEKFP 151 (156)
T ss_dssp CEEECSCHHHHHHCT
T ss_pred CCEEeCCHHHHHHHH
Confidence 3499999999 7654
No 107
>1ac5_A KEX1(delta)P; carboxypeptidase, hydrolase, glycoprotein, transmembrane; HET: NAG; 2.40A {Saccharomyces cerevisiae} SCOP: c.69.1.5
Probab=32.87 E-value=16 Score=28.58 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=13.6
Q ss_pred hCCCcEEEEcCCCCc
Q 034412 61 DDGFKIQVVSPNKDS 75 (95)
Q Consensus 61 ~~~~~v~IvS~DkDl 75 (95)
+.|.+|+|+|+|.|+
T Consensus 370 ~~girVLIYsGD~D~ 384 (483)
T 1ac5_A 370 ESGIEIVLFNGDKDL 384 (483)
T ss_dssp HTTCEEEEEEETTCS
T ss_pred hcCceEEEEECCcCc
Confidence 468999999999998
No 108
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=32.85 E-value=84 Score=20.22 Aligned_cols=52 Identities=12% Similarity=0.297 Sum_probs=34.5
Q ss_pred HHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc-ccc
Q 034412 27 QYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS-QIL 78 (95)
Q Consensus 27 ~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~DkDl-QLv 78 (95)
...-+++..+|+.++..-.-.-..-+.-+.+....+|+.|.-+|.|-.. .++
T Consensus 65 kemlelisklgykvflllqdqdeneleefkrkiesqgyevrkvtddeealkiv 117 (134)
T 2lci_A 65 KEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIV 117 (134)
T ss_dssp HHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHH
Confidence 3344555678999876543333445566677788889999999877654 444
No 109
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=32.59 E-value=1e+02 Score=23.10 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHCCCcEEecCCcchh---HHHHHHHHHhhhCCCcEEE
Q 034412 25 GLQYLKASIKAMSIKVIEVPGVEAD---DVIGKLAVRSVDDGFKIQV 68 (95)
Q Consensus 25 q~~~i~~~l~~~gi~~~~~~g~EAD---DvIatla~~~~~~~~~v~I 68 (95)
..+.+.+.|+..|+.+...++.|.+ +.+..++..+.+.+..++|
T Consensus 60 ~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~II 106 (407)
T 1vlj_A 60 VYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVL 106 (407)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 3677888888889988888888776 6666666667777777666
No 110
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=32.36 E-value=27 Score=23.44 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=27.0
Q ss_pred EEecCCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc
Q 034412 40 VIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 40 ~~~~~g~EADDvIatla~~~~~~~~~v~IvS~DkDl 75 (95)
++..+|+|.-++++.+- .+.+.|++|.++|.+.+.
T Consensus 13 il~~~gFe~~E~~~p~~-~l~~ag~~V~~~s~~~~~ 47 (177)
T 4hcj_A 13 VMSGQNFQDEEYFESKK-IFESAGYKTKVSSTFIGT 47 (177)
T ss_dssp ECCSEEECHHHHHHHHH-HHHHTTCEEEEEESSSEE
T ss_pred EECCCCccHHHHHHHHH-HHHHCCCEEEEEECCCCe
Confidence 45568999989887655 466779999999987764
No 111
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=32.20 E-value=76 Score=23.27 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=28.8
Q ss_pred HHHHHHCCCcEEecC-------CcchhHHHHHHHHHhhhCCCcEEEE
Q 034412 30 KASIKAMSIKVIEVP-------GVEADDVIGKLAVRSVDDGFKIQVV 69 (95)
Q Consensus 30 ~~~l~~~gi~~~~~~-------g~EADDvIatla~~~~~~~~~v~Iv 69 (95)
.+++..+|+..++.+ |+.-.+-+-.+++.+.+.|.+|+|=
T Consensus 33 ~~ilk~~G~N~VRi~~w~~P~~g~~~~~~~~~~~~~A~~~GlkV~ld 79 (332)
T 1hjs_A 33 ENILAANGVNTVRQRVWVNPADGNYNLDYNIAIAKRAKAAGLGVYID 79 (332)
T ss_dssp HHHHHHTTCCEEEEEECSSCTTCTTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHCCCCEEEEeeeeCCCCCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 356778999999985 5444444444577788899999883
No 112
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=31.49 E-value=1.4e+02 Score=21.07 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=37.8
Q ss_pred hhhHHhHHHHHHHHHHCCC---cEEecCCcchhHHHHHHHHHhhhCCCcEEE-EcCC
Q 034412 20 DTMVQGLQYLKASIKAMSI---KVIEVPGVEADDVIGKLAVRSVDDGFKIQV-VSPN 72 (95)
Q Consensus 20 ~~l~~q~~~i~~~l~~~gi---~~~~~~g~EADDvIatla~~~~~~~~~v~I-vS~D 72 (95)
+.-...+..+++++..+|. ..++.+-..-.+++..+.........+++| +|+=
T Consensus 47 ~~~~~A~~~i~~~l~~~~~i~~e~~~vd~~df~~~v~~i~~~i~~~~~~iivnlsGG 103 (244)
T 2wte_A 47 SGTRAAIESLRAQISRLNYPPPRIYEIEITDFNLALSKILDIILTLPEPIISDLTMG 103 (244)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCEEEEEECCCSHHHHHHHHHHHHTTSCSSEEEECSSS
T ss_pred hhHHHHHHHHHHHHHHcCCCceEEEEECCccHHHHHHHHHHHHhhcCCcEEEEecCC
Confidence 3456678889999988764 577788888888888877766554337777 5543
No 113
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=31.28 E-value=64 Score=23.70 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=29.8
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHh
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRS 59 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~ 59 (95)
...+.+.|+.||+.+....++-++++...+..-.
T Consensus 84 a~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~ 117 (302)
T 3e4c_A 84 ITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFA 117 (302)
T ss_dssp HHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHH
Confidence 5668899999999999999999999999887643
No 114
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=31.20 E-value=75 Score=22.44 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=35.7
Q ss_pred CChhhHHhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCCCCcc
Q 034412 18 TPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNKDSQ 76 (95)
Q Consensus 18 ~p~~l~~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~DkDlQ 76 (95)
+++++......+++.+...|+.++..+.++-||-=........+.-.+--|+++|..++
T Consensus 154 t~~e~~~~k~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~pfavv~s~~~~~ 212 (270)
T 3sop_A 154 TLEEKSEFKQRVRKELEVNGIEFYPQKEFDEDLEDKTENDKIRQESMPFAVVGSDKEYQ 212 (270)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCSSCSCC---CHHHHHHHHHHHTTCSEECCCCCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCccccCCCCCCcchHHHHHHHHHHhcCCCeEEEecceEEE
Confidence 45667777788888889999998877666555421111222223345667788776653
No 115
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=30.86 E-value=92 Score=21.68 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=26.1
Q ss_pred chhHHHHHHHHHhhhCCCcEEEEcCCCCc-ccccCCeEEEE
Q 034412 47 EADDVIGKLAVRSVDDGFKIQVVSPNKDS-QILSHSLCLLR 86 (95)
Q Consensus 47 EADDvIatla~~~~~~~~~v~IvS~DkDl-QLv~~~v~v~~ 86 (95)
....++..+.+ ..+.|..|+++|.|-+. .-+.++|.++.
T Consensus 188 ~~~~l~~~l~~-l~~~g~tvi~vtHd~~~~~~~~d~v~~l~ 227 (257)
T 1g6h_A 188 LAHDIFNHVLE-LKAKGITFLIIEHRLDIVLNYIDHLYVMF 227 (257)
T ss_dssp HHHHHHHHHHH-HHHTTCEEEEECSCCSTTGGGCSEEEEEE
T ss_pred HHHHHHHHHHH-HHHCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 34455555544 33457889999999888 76677776663
No 116
>2aam_A Hypothetical protein TM1410; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE UNL; 2.20A {Thermotoga maritima} SCOP: c.1.8.15
Probab=30.62 E-value=37 Score=25.18 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=33.3
Q ss_pred HHHHHHHHHCCCcEEecCCcc--hhHH-----HHHHHHHhhhCCCcEEEEcCCCCc-cc
Q 034412 27 QYLKASIKAMSIKVIEVPGVE--ADDV-----IGKLAVRSVDDGFKIQVVSPNKDS-QI 77 (95)
Q Consensus 27 ~~i~~~l~~~gi~~~~~~g~E--ADDv-----Iatla~~~~~~~~~v~IvS~DkDl-QL 77 (95)
..+..+.. .|.+++..+=.. ++.+ |..+++++.+.|+.-+|..+|.+| .+
T Consensus 231 ~~l~~~~~-~GkpV~~iEY~~~~~~~~~~~~~i~~~~~~~~~~Gf~pyvs~~~~~Ld~~ 288 (309)
T 2aam_A 231 EYLIRLNR-KGKFILSVDYVDDGSDSFENISRILDYYEKAKRNGCIPYAARSDLELDEM 288 (309)
T ss_dssp HHHHHHHH-TTCEEEEEEEEECSSCBHHHHHHHHHHHHHHHHTTEEEEEEETTCCCCSC
T ss_pred HHHHHHHH-cCCcEEEEEeCCCccchhhhHHHHHHHHHHHHHcCCEEEeCCChhhhccC
Confidence 44444444 499988876332 2223 777777888889888777778888 55
No 117
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=30.53 E-value=1e+02 Score=23.45 Aligned_cols=52 Identities=23% Similarity=0.185 Sum_probs=35.4
Q ss_pred HhHHHHHHHHHHCCCcEEecCC-cchhHHHHHH-----------------HHHhhhCCCcEEEEcCCCCc
Q 034412 24 QGLQYLKASIKAMSIKVIEVPG-VEADDVIGKL-----------------AVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 24 ~q~~~i~~~l~~~gi~~~~~~g-~EADDvIatl-----------------a~~~~~~~~~v~IvS~DkDl 75 (95)
+++..+++.++..|+.++..+- .++=|.+..+ -+...+.|.+|++-|+=..+
T Consensus 78 e~~~~L~~~~~~~Gi~~~st~fD~~svd~l~~~~v~~~KI~S~~~~N~pLL~~va~~gKPviLstGmstl 147 (350)
T 3g8r_A 78 EQMQKLVAEMKANGFKAICTPFDEESVDLIEAHGIEIIKIASCSFTDWPLLERIARSDKPVVASTAGARR 147 (350)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCCEEEECSSSTTCHHHHHHHHTSCSCEEEECTTCCH
T ss_pred HHHHHHHHHHHHcCCcEEeccCCHHHHHHHHHcCCCEEEECcccccCHHHHHHHHhhCCcEEEECCCCCH
Confidence 4578899999999999999884 4554777765 22334456677776654433
No 118
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=29.89 E-value=77 Score=23.01 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=24.3
Q ss_pred hHHhHHHHHHHHHHCCCcEEecC-CcchhHHHHH
Q 034412 22 MVQGLQYLKASIKAMSIKVIEVP-GVEADDVIGK 54 (95)
Q Consensus 22 l~~q~~~i~~~l~~~gi~~~~~~-g~EADDvIat 54 (95)
+.+.+..++++++.+|++++..+ ..++=|.++.
T Consensus 71 l~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~ 104 (280)
T 2qkf_A 71 LEEGLKIFEKVKAEFGIPVITDVHEPHQCQPVAE 104 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEECCSGGGHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHh
Confidence 56788999999999999998855 4444445543
No 119
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=29.86 E-value=1.3e+02 Score=20.20 Aligned_cols=49 Identities=10% Similarity=0.013 Sum_probs=34.5
Q ss_pred HhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCC
Q 034412 24 QGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPN 72 (95)
Q Consensus 24 ~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~D 72 (95)
..+..-.+.+...-+-+...+|.+.|.=.+.=.-.+...|.+|+++++|
T Consensus 58 ~i~~~D~~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D 106 (162)
T 3ehd_A 58 MIALADTENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTD 106 (162)
T ss_dssp HHHHHHHHHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcC
Confidence 3445555567777777777899999975554333456678899999876
No 120
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=29.78 E-value=73 Score=20.58 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhCCCcEEEEcCCCCc-ccccCCeEEEEe
Q 034412 50 DVIGKLAVRSVDDGFKIQVVSPNKDS-QILSHSLCLLRI 87 (95)
Q Consensus 50 DvIatla~~~~~~~~~v~IvS~DkDl-QLv~~~v~v~~~ 87 (95)
.++..+. .....|..|+++|.|.++ + +.+++.++..
T Consensus 101 ~l~~~l~-~~~~~~~tiiivsH~~~~~~-~~d~ii~l~~ 137 (148)
T 1f2t_B 101 KLITIME-RYLKKIPQVILVSHDEELKD-AADHVIRISL 137 (148)
T ss_dssp HHHHHHH-HTGGGSSEEEEEESCGGGGG-GCSEEEEEEE
T ss_pred HHHHHHH-HHHccCCEEEEEEChHHHHH-hCCEEEEEEc
Confidence 3444433 333346789999999877 6 4566666654
No 121
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=29.38 E-value=61 Score=18.82 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=30.0
Q ss_pred ChhhHHhHHHHHHHHHHCCCcEEecCC--------------cchhHHHHHHHHHhh
Q 034412 19 PDTMVQGLQYLKASIKAMSIKVIEVPG--------------VEADDVIGKLAVRSV 60 (95)
Q Consensus 19 p~~l~~q~~~i~~~l~~~gi~~~~~~g--------------~EADDvIatla~~~~ 60 (95)
=.++..+.|...++|...|+.++.-+| ...|.+++.|-....
T Consensus 11 I~eiv~~~P~~~~vf~~~G~~c~~C~~a~~~tL~~Aa~~~gid~~~ll~~Ln~~~~ 66 (73)
T 2k5e_A 11 FAQALQTHPGVAGVLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDILRDLNALAL 66 (73)
T ss_dssp HHHHHHHCTHHHHHHHHTTGGGGGTTTGGGSBHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 356778889999999999998777665 555666666554433
No 122
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides fragilis}
Probab=29.30 E-value=44 Score=25.32 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=23.0
Q ss_pred chhHHHHHHHHHhhhCC---CcEEEEcCCCCc
Q 034412 47 EADDVIGKLAVRSVDDG---FKIQVVSPNKDS 75 (95)
Q Consensus 47 EADDvIatla~~~~~~~---~~v~IvS~DkDl 75 (95)
..|+.||.+.....+.| ..++|+++|.-.
T Consensus 285 ~~D~~iG~ll~~L~~~g~~dnTiIiftSDHG~ 316 (491)
T 2qzu_A 285 GVDENVGRIIEALKQNNLFDNTIVVFTSDHGI 316 (491)
T ss_dssp HHHHHHHHHHHHHHHTTCSTTEEEEEECSCCC
T ss_pred HHHHHHHHHHHHHHHcCCcCCeEEEEECcCCc
Confidence 47888998888877765 368899999875
No 123
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=29.10 E-value=92 Score=22.12 Aligned_cols=37 Identities=8% Similarity=0.182 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhCCCcEEEEcCCCCc-ccccCCeEEEEe
Q 034412 51 VIGKLAVRSVDDGFKIQVVSPNKDS-QILSHSLCLLRI 87 (95)
Q Consensus 51 vIatla~~~~~~~~~v~IvS~DkDl-QLv~~~v~v~~~ 87 (95)
+=..+|..+...|++|+++++...+ .....++.+..+
T Consensus 31 mG~aiA~~~~~~Ga~V~lv~~~~~~~~~~~~~~~~~~v 68 (232)
T 2gk4_A 31 LGKIITETLLSAGYEVCLITTKRALKPEPHPNLSIREI 68 (232)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSCCCCCCTTEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCccccccCCCCeEEEEH
Confidence 4456788888899999999998877 433346666654
No 124
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=29.04 E-value=77 Score=20.57 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=29.8
Q ss_pred CCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc
Q 034412 37 SIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 37 gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~DkDl 75 (95)
-+.++..+|+|.-|+.+.+- .+...|+++.++|.+...
T Consensus 11 ~v~il~~~g~~~~e~~~~~~-~l~~ag~~v~~vs~~~~~ 48 (190)
T 2vrn_A 11 KIAILAADGVEEIELTSPRA-AIEAAGGTTELISLEPGE 48 (190)
T ss_dssp EEEEECCTTCBHHHHHHHHH-HHHHTTCEEEEEESSSSE
T ss_pred EEEEEeCCCCCHHHHHHHHH-HHHHCCCEEEEEecCCCc
Confidence 45677889999999988655 455678999999988765
No 125
>4fdi_A N-acetylgalactosamine-6-sulfatase; glycoprotein, enzyme replacement therapy, formylg N-linked glycosylation, lysosomal enzyme, hydrolase; HET: NAG CIT; 2.20A {Homo sapiens} PDB: 4fdj_A*
Probab=29.03 E-value=36 Score=26.04 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=24.2
Q ss_pred chhHHHHHHHHHhhhCCC---cEEEEcCCCCc
Q 034412 47 EADDVIGKLAVRSVDDGF---KIQVVSPNKDS 75 (95)
Q Consensus 47 EADDvIatla~~~~~~~~---~v~IvS~DkDl 75 (95)
+.|+.||.+.....+.|. .+||+|+|--.
T Consensus 234 ~~D~~vG~il~~L~~~gl~dnTiViftSDhG~ 265 (502)
T 4fdi_A 234 EIDDSIGKILELLQDLHVADNTFVFFTSDNGA 265 (502)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGEEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHcCCCcCceEEEecCCCc
Confidence 479999999988877764 69999999985
No 126
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=28.97 E-value=1.1e+02 Score=19.08 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=24.6
Q ss_pred HHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCC
Q 034412 33 IKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPN 72 (95)
Q Consensus 33 l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~D 72 (95)
+...|+.++.. .+.+++-.++-+...+.++-|+++|.+
T Consensus 18 FrLaGi~~~~v--~~~ee~~~~~~~l~~~~digIIlIte~ 55 (109)
T 2d00_A 18 FRLAGLEGYGA--SSAEEAQSLLETLVERGGYALVAVDEA 55 (109)
T ss_dssp HHHTTSEEEEC--SSHHHHHHHHHHHHHHCCCSEEEEETT
T ss_pred HHHcCCeEEEe--CCHHHHHHHHHHHhhCCCeEEEEEeHH
Confidence 45578876544 455666666666556667888888843
No 127
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=28.78 E-value=54 Score=19.14 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=15.3
Q ss_pred CCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc
Q 034412 44 PGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 44 ~g~EADDvIatla~~~~~~~~~v~IvS~DkDl 75 (95)
|+..+-+++..+-........+|+++|+..+.
T Consensus 57 p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~ 88 (122)
T 3gl9_A 57 PVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGE 88 (122)
T ss_dssp SSSCHHHHHHHHHTSTTTTTSCEEEEESCCSH
T ss_pred CCCcHHHHHHHHHhcccccCCCEEEEecCCch
Confidence 34444444444332222234577777766554
No 128
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=28.44 E-value=80 Score=20.65 Aligned_cols=35 Identities=29% Similarity=0.274 Sum_probs=27.8
Q ss_pred CcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCCC
Q 034412 38 IKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNK 73 (95)
Q Consensus 38 i~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~Dk 73 (95)
+.++..+|+|.-|+.+.+- .+...|+++.++|.+.
T Consensus 8 v~ill~~g~~~~e~~~~~~-~l~~ag~~v~~~s~~~ 42 (190)
T 4e08_A 8 ALVILAPGAEEMEFIIAAD-VLRRAGIKVTVAGLNG 42 (190)
T ss_dssp EEEEECTTCCHHHHHHHHH-HHHHTTCEEEEEESSS
T ss_pred EEEEECCCchHHHHHHHHH-HHHHCCCEEEEEECCC
Confidence 4466779999999988654 4566789999999887
No 129
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=28.32 E-value=84 Score=20.95 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=28.4
Q ss_pred CcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCCCC
Q 034412 38 IKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNKD 74 (95)
Q Consensus 38 i~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~DkD 74 (95)
+.++..+|+|.-|+.+.+- .+...|+++.++|.+..
T Consensus 5 V~ill~~g~~~~e~~~~~~-~l~~ag~~v~~vs~~~~ 40 (205)
T 2ab0_A 5 ALVCLAPGSEETEAVTTID-LLVRGGIKVTTASVASD 40 (205)
T ss_dssp EEEEECTTCCHHHHHHHHH-HHHHTTCEEEEEECSST
T ss_pred EEEEEcCCCcHHHHHHHHH-HHHHCCCEEEEEeCCCC
Confidence 5577889999999888654 45556899999998875
No 130
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=28.09 E-value=55 Score=24.33 Aligned_cols=33 Identities=6% Similarity=-0.106 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHCCCcEEecCCcchhHHHHHHHH
Q 034412 25 GLQYLKASIKAMSIKVIEVPGVEADDVIGKLAV 57 (95)
Q Consensus 25 q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~ 57 (95)
.+..+.++++.+|+|.--.+|...||++..+..
T Consensus 287 ~~~~i~~ll~~~glP~~l~~~i~~~~~~~~~~~ 319 (368)
T 2gru_A 287 DVSAHYWLLNKIGALQDIPLKSDPDSIFHYLIH 319 (368)
T ss_dssp HHHHHHHHHHHTTTTTSCCCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCCcCCCCHHHHHHHHHH
Confidence 357788999999999654448899999988775
No 131
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=28.06 E-value=1.1e+02 Score=24.75 Aligned_cols=48 Identities=19% Similarity=0.119 Sum_probs=33.5
Q ss_pred HHHHHHHHCCCcEE-ecCC-cchhHHHHHHHHHhhhCCCcE-EEEcCCCCc
Q 034412 28 YLKASIKAMSIKVI-EVPG-VEADDVIGKLAVRSVDDGFKI-QVVSPNKDS 75 (95)
Q Consensus 28 ~i~~~l~~~gi~~~-~~~g-~EADDvIatla~~~~~~~~~v-~IvS~DkDl 75 (95)
.+.+.++++|+.++ .++| .-.+++..++.......+.++ +++.+.|-+
T Consensus 202 d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~~~~P~lI~~~T~kg~ 252 (673)
T 1r9j_A 202 QCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMIVQTTTIGF 252 (673)
T ss_dssp CHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTT
T ss_pred hHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCCEEEEEeccccc
Confidence 35667889999999 8999 888889888865433234454 445555544
No 132
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=28.03 E-value=1.5e+02 Score=22.40 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=33.9
Q ss_pred hHHhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCCC
Q 034412 22 MVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNK 73 (95)
Q Consensus 22 l~~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~Dk 73 (95)
+.+.+..+.+-|.++|++++...| ++-+++..+++.. +...++++.|-
T Consensus 50 l~~sL~~l~~~L~~~g~~l~~~~g-~~~~~l~~l~~~~---~~~~v~~~~~~ 97 (420)
T 2j07_A 50 FLENVRALREAYRARGGALWVLEG-LPWEKVPEAARRL---KAKAVYALTSH 97 (420)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEES-CHHHHHHHHHHHT---TCSEEEEECCC
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHHc---CCCEEEEeccc
Confidence 456677788888999999888776 6677777766543 45666665443
No 133
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=27.94 E-value=63 Score=23.78 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=29.6
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHh
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRS 59 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~ 59 (95)
-..+.++|+.||+.+....++-++++...+....
T Consensus 96 a~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~ 129 (305)
T 1f1j_A 96 AEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKAS 129 (305)
T ss_dssp HHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHH
Confidence 4568889999999999999999999999887643
No 134
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=27.90 E-value=32 Score=23.46 Aligned_cols=36 Identities=6% Similarity=-0.065 Sum_probs=26.5
Q ss_pred CcEEecCCcchhHHHHHHHHHhhhC-CCcEEEEcCCCC
Q 034412 38 IKVIEVPGVEADDVIGKLAVRSVDD-GFKIQVVSPNKD 74 (95)
Q Consensus 38 i~~~~~~g~EADDvIatla~~~~~~-~~~v~IvS~DkD 74 (95)
+.++..+|+|.-|+.+.+.. .... ++++.++|.+..
T Consensus 6 V~ill~~g~~~~E~~~~~~~-l~~~~~~~v~~vs~~~~ 42 (206)
T 3f5d_A 6 ALFLILDQYADWEGVYLASA-LNQREDWSVHTVSLDPI 42 (206)
T ss_dssp EEEECCSSBCTTTSHHHHHH-HHTSTTEEEEEEESSSE
T ss_pred EEEEEcCCCcHHHHHHHHHH-HhccCCeEEEEEECCCC
Confidence 45677899999888776554 4444 889999998765
No 135
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=27.75 E-value=1e+02 Score=24.98 Aligned_cols=47 Identities=11% Similarity=0.047 Sum_probs=33.7
Q ss_pred HHHHHHHCCCcEE-ecCCcchhHHHHHHHHHhhhCCCcE-EEEcCCCCc
Q 034412 29 LKASIKAMSIKVI-EVPGVEADDVIGKLAVRSVDDGFKI-QVVSPNKDS 75 (95)
Q Consensus 29 i~~~l~~~gi~~~-~~~g~EADDvIatla~~~~~~~~~v-~IvS~DkDl 75 (95)
+...++++|++.+ .++|..-+++..++.......+.++ +++-+.|..
T Consensus 201 ~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~ 249 (669)
T 2r8o_A 201 TAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTIIGF 249 (669)
T ss_dssp HHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHCCSSCEEEEEECCTTT
T ss_pred HHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHhcCCCCEEEEEEeEecc
Confidence 4557889999999 8999999999998876443234454 445666655
No 136
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=27.72 E-value=36 Score=26.54 Aligned_cols=22 Identities=36% Similarity=0.705 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhhCCCcEEEEcC
Q 034412 50 DVIGKLAVRSVDDGFKIQVVSP 71 (95)
Q Consensus 50 DvIatla~~~~~~~~~v~IvS~ 71 (95)
|++++|++...+.|.+|.|+++
T Consensus 30 dvv~~L~~aL~~~G~~V~Vi~P 51 (536)
T 3vue_A 30 DVLGGLPPAMAANGHRVMVISP 51 (536)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEec
Confidence 7999999999999999999985
No 137
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=27.18 E-value=78 Score=18.78 Aligned_cols=32 Identities=13% Similarity=0.349 Sum_probs=16.8
Q ss_pred CCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc
Q 034412 44 PGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 44 ~g~EADDvIatla~~~~~~~~~v~IvS~DkDl 75 (95)
|+..+-+++..+-........+|+++|+..+.
T Consensus 59 p~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~ 90 (136)
T 3t6k_A 59 PGIDGYTLCKRVRQHPLTKTLPILMLTAQGDI 90 (136)
T ss_dssp SSSCHHHHHHHHHHSGGGTTCCEEEEECTTCH
T ss_pred CCCCHHHHHHHHHcCCCcCCccEEEEecCCCH
Confidence 34444455554433222335577777777665
No 138
>3lxq_A Uncharacterized protein VP1736; alkaline, phosphatase, MDOB, sulfatase, PSI, MCSG, structural genomics; 1.95A {Vibrio parahaemolyticus}
Probab=27.10 E-value=34 Score=25.59 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=23.9
Q ss_pred chhHHHHHHHHHhhhCC---CcEEEEcCCCCc
Q 034412 47 EADDVIGKLAVRSVDDG---FKIQVVSPNKDS 75 (95)
Q Consensus 47 EADDvIatla~~~~~~~---~~v~IvS~DkDl 75 (95)
.+|+.||.+.....+.| ..++|+++|...
T Consensus 277 ~~D~~ig~~l~~L~~~g~~~nTlvI~tsDHG~ 308 (450)
T 3lxq_A 277 YSDYALGTFFDKAKKSSYWDDTIFIVIADHDA 308 (450)
T ss_dssp HHHHHHHHHHHHHTTSSSGGGEEEEEEESCCS
T ss_pred HHHHHHHHHHHHHHhCCCcCCeEEEEECCCCc
Confidence 57999999998887765 368899999875
No 139
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=27.03 E-value=95 Score=25.58 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=29.2
Q ss_pred HHHHHHHCCCcEEec-CCcchhHHHHHHHHHhhhCCCcEEE
Q 034412 29 LKASIKAMSIKVIEV-PGVEADDVIGKLAVRSVDDGFKIQV 68 (95)
Q Consensus 29 i~~~l~~~gi~~~~~-~g~EADDvIatla~~~~~~~~~v~I 68 (95)
+...++++|++++.+ +|.-.+.|..++.......+.+++|
T Consensus 223 ~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~~~~~P~lI 263 (700)
T 3rim_A 223 TAARYRAYGWHVQEVEGGENVVGIEEAIANAQAVTDRPSFI 263 (700)
T ss_dssp HHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHCCSSCEEE
T ss_pred HHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHHcCCCCEEE
Confidence 456678899999999 9998888888877543323556554
No 140
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=26.96 E-value=89 Score=22.29 Aligned_cols=40 Identities=10% Similarity=0.262 Sum_probs=27.9
Q ss_pred chhHHHHHHHHHhhhCCCcEEEEcCCCCc-ccccCCeEEEE
Q 034412 47 EADDVIGKLAVRSVDDGFKIQVVSPNKDS-QILSHSLCLLR 86 (95)
Q Consensus 47 EADDvIatla~~~~~~~~~v~IvS~DkDl-QLv~~~v~v~~ 86 (95)
....++..+.....+.|..|+++|.|-++ .-+.++|.++.
T Consensus 178 ~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~ 218 (275)
T 3gfo_A 178 GVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMK 218 (275)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 44556665554432448889999999998 77778877764
No 141
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=26.89 E-value=81 Score=20.82 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=28.1
Q ss_pred CCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCCCC
Q 034412 37 SIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNKD 74 (95)
Q Consensus 37 gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~DkD 74 (95)
-+.++..+|+|.-|+.+.+- .+...|+++.++|.+.+
T Consensus 25 kV~ill~~g~~~~e~~~~~~-~l~~ag~~v~~vs~~~~ 61 (193)
T 1oi4_A 25 KIAVLITDEFEDSEFTSPAD-EFRKAGHEVITIEKQAG 61 (193)
T ss_dssp EEEEECCTTBCTHHHHHHHH-HHHHTTCEEEEEESSTT
T ss_pred EEEEEECCCCCHHHHHHHHH-HHHHCCCEEEEEECCCC
Confidence 35677789999988877544 45567899999998764
No 142
>1hdh_A Arylsulfatase; hydrolase, formylglycine hydrate; 1.3A {Pseudomonas aeruginosa} SCOP: c.76.1.2
Probab=26.61 E-value=42 Score=25.68 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=23.9
Q ss_pred chhHHHHHHHHHhhhCCC---cEEEEcCCCCc
Q 034412 47 EADDVIGKLAVRSVDDGF---KIQVVSPNKDS 75 (95)
Q Consensus 47 EADDvIatla~~~~~~~~---~v~IvS~DkDl 75 (95)
..|+.||.+.....+.|. .++|+++|.-.
T Consensus 289 ~~D~~iG~ll~~L~~~g~~dnTiIiftSDhG~ 320 (536)
T 1hdh_A 289 RMDWNIGRVVDYLRRQGELDNTFVLFMSDNGA 320 (536)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGEEEEEEESSSC
T ss_pred HHHHHHHHHHHHHHHcCCcCCeEEEEECcCCC
Confidence 679999999888877763 68899999875
No 143
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2; lysophospholipase D, autotaxin, ENPP2, lysophosphatidic acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A* 2xrg_A* 2xr9_A*
Probab=26.59 E-value=62 Score=27.07 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=25.8
Q ss_pred chhHHHHHHHHHhhhCC---CcEEEEcCCCCc-cccc
Q 034412 47 EADDVIGKLAVRSVDDG---FKIQVVSPNKDS-QILS 79 (95)
Q Consensus 47 EADDvIatla~~~~~~~---~~v~IvS~DkDl-QLv~ 79 (95)
+.|+.||.|.....+.| .-++|+++|.-| +.-.
T Consensus 295 ~vD~~IG~Ll~~Lk~~GL~dnT~VI~TSDHGm~~v~~ 331 (831)
T 3nkq_A 295 EIDKTVGQLMDGLKQLKLHRCVNVIFVGDHGMEDVTC 331 (831)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTCEEEEEESCCCEECCT
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEEEcCCCCCCCCC
Confidence 46899999998887766 358899999988 6543
No 144
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=26.38 E-value=91 Score=23.96 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=33.4
Q ss_pred hHHhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCCC
Q 034412 22 MVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNK 73 (95)
Q Consensus 22 l~~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~Dk 73 (95)
+.+.+..+.+-|.++|++++...| ++.+++..+++ +...++++.|-
T Consensus 54 l~~sL~~L~~~L~~~G~~L~v~~g-~~~~~l~~l~~-----~~~~v~~~~~~ 99 (440)
T 2e0i_A 54 MINSLLELDDELRKKGSRLNVFFG-EAEKVVSRFFN-----KVDAIYVNEDY 99 (440)
T ss_dssp HHHHHHHHHHHHHTTTCCCEEEES-CHHHHHHHHCT-----TCSEEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEC-CHHHHHHHHHc-----CCCEEEEeccc
Confidence 566678888888999999888776 67777776665 55666665443
No 145
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=26.35 E-value=80 Score=22.22 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=29.5
Q ss_pred CcEEec-----CCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc
Q 034412 38 IKVIEV-----PGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 38 i~~~~~-----~g~EADDvIatla~~~~~~~~~v~IvS~DkDl 75 (95)
+.++.. +|+|.-++++.+-. +.+.|++|.++|.+...
T Consensus 26 V~ill~~~~~~dG~e~~E~~~p~~v-L~~aG~~V~~~S~~~g~ 67 (242)
T 3l3b_A 26 SAVILAGCGHMDGSEIREAVLVMLE-LDRHNVNFKCFAPNKNQ 67 (242)
T ss_dssp EEEECCCSSTTTSCCHHHHHHHHHH-HHHTTCEEEEEECSSBC
T ss_pred EEEEEecCCCCCCeeHHHHHHHHHH-HHHCCCEEEEEecCCCc
Confidence 445555 99999999998764 56679999999998864
No 146
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=26.34 E-value=1e+02 Score=25.35 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=32.8
Q ss_pred HHHHHHHCCCcEEec-CCcchhHHHHHHHHHhhhCCCcEE-EEcCCCCc
Q 034412 29 LKASIKAMSIKVIEV-PGVEADDVIGKLAVRSVDDGFKIQ-VVSPNKDS 75 (95)
Q Consensus 29 i~~~l~~~gi~~~~~-~g~EADDvIatla~~~~~~~~~v~-IvS~DkDl 75 (95)
+...++++|+.++.+ +|.-.+++..++.......+.+++ ++-+.|-.
T Consensus 227 ~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~~~~P~lI~v~T~kG~ 275 (690)
T 3m49_A 227 VEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEVRTTIGF 275 (690)
T ss_dssp HHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTT
T ss_pred HHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCEEEEEEeeccc
Confidence 456788899999998 999999999988754331344544 45555544
No 147
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=26.28 E-value=1.7e+02 Score=22.17 Aligned_cols=53 Identities=11% Similarity=0.004 Sum_probs=36.1
Q ss_pred HHhHHHHHHHHHHCCCcEEecC-CcchhHHHHHH-H----------------HHhhhCCCcEEEEcCCCCc
Q 034412 23 VQGLQYLKASIKAMSIKVIEVP-GVEADDVIGKL-A----------------VRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 23 ~~q~~~i~~~l~~~gi~~~~~~-g~EADDvIatl-a----------------~~~~~~~~~v~IvS~DkDl 75 (95)
.+++..+++.++..|+.++..+ ..++=|.+..+ + +...+.|.+|++-|+=..+
T Consensus 90 ~e~~~~L~~~~~~~Gi~~~st~~d~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPviLstGmat~ 160 (349)
T 2wqp_A 90 EEDEIKLKEYVESKGMIFISTLFSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGMNSI 160 (349)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHTCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTTCCH
T ss_pred HHHHHHHHHHHHHhCCeEEEeeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEECCCCCH
Confidence 3467889999999999999988 44444777766 2 2234456677776654443
No 148
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=26.23 E-value=1.9e+02 Score=22.33 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=34.2
Q ss_pred hHHhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCC
Q 034412 22 MVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPN 72 (95)
Q Consensus 22 l~~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~D 72 (95)
|.+.+..+.+-|.++|++++...+-++-++|..+++.. +...++++.|
T Consensus 63 l~~sL~~L~~~L~~~G~~L~v~~~g~~~~~l~~l~~~~---~~~~V~~~~~ 110 (509)
T 1u3d_A 63 LKNSLAQLDSSLRSLGTCLITKRSTDSVASLLDVVKST---GASQIFFNHL 110 (509)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHHH---TCCEEEEECC
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHc---CCCEEEEecc
Confidence 45667788888899999988876446667777776654 4466666654
No 149
>3ot9_A Phosphopentomutase; alkaline phosphatase like core domain, R phosphate, ribose-1-phosphate, glucose-1,6-bisphosphate, PH transfer, isomerase; HET: TPO G16; 1.75A {Bacillus cereus} PDB: 3m8y_A* 3m8w_A* 3m8z_A* 3twz_A* 3tx0_A 3uo0_A* 3un2_A 3un3_A* 3un5_A 3uny_A
Probab=26.09 E-value=74 Score=24.62 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=41.4
Q ss_pred CCChhhHHhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCCCCcccc
Q 034412 17 PTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNKDSQIL 78 (95)
Q Consensus 17 ~~p~~l~~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~DkDlQLv 78 (95)
.-|++|.++ +.+..|.+++.-.-+-...||.-+.....+.|..|+--|.|.-||+-
T Consensus 112 ~fp~~l~~~------~~~~~g~~~l~n~~~sgt~ii~~~g~~~~~tg~~ivytsadsv~qia 167 (399)
T 3ot9_A 112 GFPKELLDE------LEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQIA 167 (399)
T ss_dssp CCCHHHHHH------HHHHHTCCEEEEEECCHHHHHHHHHHHHHHHCCEEEEECSSSEEEEE
T ss_pred cccHHHHHH------HHHHhCCeEEecccCCcccHHHhhCHHHHhhCCceEEEcCCceeEEE
Confidence 356666444 34455878776556777889999998777789999999999877663
No 150
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=25.77 E-value=88 Score=20.93 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=28.2
Q ss_pred CcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCCC
Q 034412 38 IKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNK 73 (95)
Q Consensus 38 i~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~Dk 73 (95)
+.++..+|+|.-++.+.+- .+...|++|.++|.+.
T Consensus 12 v~ill~~g~~~~e~~~~~~-~l~~ag~~v~~vs~~g 46 (208)
T 3ot1_A 12 ILVPVAHGSEEMETVIIVD-TLVRAGFQVTMAAVGD 46 (208)
T ss_dssp EEEEECTTCCHHHHHHHHH-HHHHTTCEEEEEESSS
T ss_pred EEEEECCCCcHHHHHHHHH-HHHHCCCEEEEEEcCC
Confidence 5677889999999988765 4556789999999974
No 151
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=25.69 E-value=1.6e+02 Score=20.68 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=26.6
Q ss_pred HhHHHHHHHHHH-CCCcEEecCCcchhHHHHHHHHHhhhC-CCcEEEEcCCC
Q 034412 24 QGLQYLKASIKA-MSIKVIEVPGVEADDVIGKLAVRSVDD-GFKIQVVSPNK 73 (95)
Q Consensus 24 ~q~~~i~~~l~~-~gi~~~~~~g~EADDvIatla~~~~~~-~~~v~IvS~Dk 73 (95)
..+..+.+.|.. +|+.+....|--...-=..+...+... ..+|+++|+|.
T Consensus 123 ~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 123 DMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp HHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred HHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 345556666665 488777776543222222223334443 45677777653
No 152
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=25.55 E-value=1.4e+02 Score=22.87 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=32.2
Q ss_pred hHHhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 22 MVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 22 l~~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
|.+.+..+++-|.++|++++...| ++-++|..+++.. +...+++.
T Consensus 63 l~~sL~~L~~~L~~~G~~L~v~~g-~~~~~l~~l~~~~---~~~~V~~~ 107 (489)
T 1np7_A 63 LQQSVQNLAESLQKVGNKLLVTTG-LPEQVIPQIAKQI---NAKTIYYH 107 (489)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEES-CHHHHHHHHHHHT---TEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEC-CHHHHHHHHHHHc---CCCEEEEe
Confidence 566678888889999999888777 6777777777543 33444444
No 153
>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint center for structural genomics, JCSG; HET: EPE; 2.40A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.43 E-value=43 Score=25.51 Aligned_cols=29 Identities=7% Similarity=0.048 Sum_probs=23.5
Q ss_pred chhHHHHHHHHHhhhCCC---cEEEEcCCCCc
Q 034412 47 EADDVIGKLAVRSVDDGF---KIQVVSPNKDS 75 (95)
Q Consensus 47 EADDvIatla~~~~~~~~---~v~IvS~DkDl 75 (95)
+.|+.||.+.....+.|. .++|+++|.-.
T Consensus 256 ~~D~~vG~ll~~L~~~g~~dnTiVIftSDHG~ 287 (482)
T 3b5q_A 256 MVSKQVDSVLKALYSTPAGRNTIVVIMADHGD 287 (482)
T ss_dssp HHHHHHHHHHHHHTTSTTGGGEEEEEEESCCC
T ss_pred HHHHHHHHHHHHHHHcCCcCCeEEEEECCCCc
Confidence 579999999988877653 68899999865
No 154
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=25.38 E-value=2e+02 Score=22.04 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=34.8
Q ss_pred hHHhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCCCC
Q 034412 22 MVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNKD 74 (95)
Q Consensus 22 l~~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~DkD 74 (95)
+.+.+..+++-|.++|++++...| ++.+++..+++.. +...++++.+-+
T Consensus 90 l~~sL~~L~~~L~~~G~~L~v~~g-~~~~~l~~l~~~~---~~~~V~~~~~~~ 138 (482)
T 2xry_A 90 MLKGLQELEVSLSRKKIPSFFLRG-DPGEKISRFVKDY---NAGTLVTDFSPL 138 (482)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEES-CHHHHHHHHHHHT---TCSEEEEECCCS
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHHHHHc---CCCEEEEecccc
Confidence 456677788888999999888776 6777777776543 456666655544
No 155
>1jke_A O145, D-Tyr-trnaTyr deacylase, ORF_O145; beta-alpha-barrel, hydrolase; 1.55A {Escherichia coli} SCOP: c.110.1.1
Probab=25.33 E-value=49 Score=22.31 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=20.6
Q ss_pred ccChhh-hcCCCC-----CChhhHHhHHHHHHHHHHCCCc
Q 034412 6 TLYPSY-KNNRPP-----TPDTMVQGLQYLKASIKAMSIK 39 (95)
Q Consensus 6 ~l~p~Y-KanR~~-----~p~~l~~q~~~i~~~l~~~gi~ 39 (95)
.||.+. |+||+. .|+.-...+..+-+.|+..|.+
T Consensus 80 TL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~~~~~~ 119 (145)
T 1jke_A 80 TLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQEMN 119 (145)
T ss_dssp GGGSBCSSSSSCBCSSBCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccccccCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCCc
Confidence 477888 778764 3333333356666677766654
No 156
>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal enzyme, hydrolas; HET: NDG NAG; 2.10A {Homo sapiens} SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P* 1e3c_P* 1e33_P*
Probab=25.30 E-value=46 Score=25.37 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=23.4
Q ss_pred chhHHHHHHHHHhhhCCC---cEEEEcCCCCc
Q 034412 47 EADDVIGKLAVRSVDDGF---KIQVVSPNKDS 75 (95)
Q Consensus 47 EADDvIatla~~~~~~~~---~v~IvS~DkDl 75 (95)
+.|+.||-+.....+.|. .++|+++|.-.
T Consensus 235 ~~D~~vG~ll~~L~~~gl~dnTiViftSDhG~ 266 (489)
T 1auk_A 235 ELDAAVGTLMTAIGDLGLLEETLVIFTADNGP 266 (489)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGEEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHcCCcCCeEEEEeCCCCc
Confidence 478899998888887763 68899999875
No 157
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=25.29 E-value=1.6e+02 Score=19.94 Aligned_cols=46 Identities=9% Similarity=0.071 Sum_probs=28.3
Q ss_pred HHHHHHHHHCCCcEEecCCcch---hHHHHHHHHHhhhCCCcEEEEcCC
Q 034412 27 QYLKASIKAMSIKVIEVPGVEA---DDVIGKLAVRSVDDGFKIQVVSPN 72 (95)
Q Consensus 27 ~~i~~~l~~~gi~~~~~~g~EA---DDvIatla~~~~~~~~~v~IvS~D 72 (95)
+.+.+.|...|+.+...+-|+- .+....+..........++++||=
T Consensus 144 ~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~ 192 (261)
T 1wcw_A 144 PLLENALAERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAFVAA 192 (261)
T ss_dssp HHHHHHHHHTTEEEEEECSEEEEECHHHHHHHHHHHHHTCCSEEEECSH
T ss_pred HHHHHHHHHCCCEEEEEeeEEEecCCccHHHHHHHHHcCCCCEEEEECH
Confidence 3456677888999888887743 222333344444455677777654
No 158
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=25.25 E-value=1.8e+02 Score=20.34 Aligned_cols=47 Identities=9% Similarity=0.063 Sum_probs=29.3
Q ss_pred HHHHHHHHHCCCcEEecCCcch---hHHHHHHHHHhhhCCCcEEEEcCCC
Q 034412 27 QYLKASIKAMSIKVIEVPGVEA---DDVIGKLAVRSVDDGFKIQVVSPNK 73 (95)
Q Consensus 27 ~~i~~~l~~~gi~~~~~~g~EA---DDvIatla~~~~~~~~~v~IvS~Dk 73 (95)
+.+.+.|...|+.+...+-|+- .+....+..........++++||=.
T Consensus 169 ~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~FtS~~ 218 (286)
T 3d8t_A 169 PLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAVLRGEVDALAFVAAI 218 (286)
T ss_dssp HHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHHHTTCCSEEEESSHH
T ss_pred HHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHHHcCCCCEEEEECHH
Confidence 3466778889999988887743 2223334444444456788877643
No 159
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=25.25 E-value=89 Score=23.84 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=26.4
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHh
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRS 59 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~ 59 (95)
...+.++|+.+|+++....+...|+++..+..--
T Consensus 318 ~~ri~~~l~~~glp~~~~~~~~~~~~~~~m~~DK 351 (390)
T 3okf_A 318 FERILAILKKAHLPVRTPENMTFADFMQHMMRDK 351 (390)
T ss_dssp HHHHHHHHHHTTCCCSCCTTCCHHHHHHHHTGGG
T ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhhh
Confidence 5668888999999985555688999998877543
No 160
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=25.23 E-value=33 Score=23.17 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHhhhCCCcEEEEcCCCCc--cccc
Q 034412 48 ADDVIGKLAVRSVDDGFKIQVVSPNKDS--QILS 79 (95)
Q Consensus 48 ADDvIatla~~~~~~~~~v~IvS~DkDl--QLv~ 79 (95)
-.|++--|+..+.+.|.+|.|+|++..- ||+.
T Consensus 118 ~~~~ve~L~e~~~~~G~~v~ivs~~~eeG~ql~~ 151 (166)
T 3ir9_A 118 VTDIVDEFSELADKSNAKVVFVSTDFDEGSQLMN 151 (166)
T ss_dssp EEEHHHHHHHHHHHTTCEEEEECSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEEECCCChhHHHHHH
Confidence 3478888898999999999999999987 7754
No 161
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=25.18 E-value=65 Score=18.82 Aligned_cols=13 Identities=8% Similarity=0.212 Sum_probs=7.4
Q ss_pred CCcEEEEcCCCCc
Q 034412 63 GFKIQVVSPNKDS 75 (95)
Q Consensus 63 ~~~v~IvS~DkDl 75 (95)
..+|+++|+..+.
T Consensus 81 ~~pii~~s~~~~~ 93 (129)
T 3h1g_A 81 EIPIIMITAEGGK 93 (129)
T ss_dssp TCCEEEEESCCSH
T ss_pred CCeEEEEeCCCCh
Confidence 3466666665543
No 162
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=25.08 E-value=51 Score=28.55 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=31.5
Q ss_pred chhHHHHHHHHHhhhCCCcEEEEcCCCCc-ccccCCeEEEEe
Q 034412 47 EADDVIGKLAVRSVDDGFKIQVVSPNKDS-QILSHSLCLLRI 87 (95)
Q Consensus 47 EADDvIatla~~~~~~~~~v~IvS~DkDl-QLv~~~v~v~~~ 87 (95)
+.+.++.++.+ ..+.|..|++||.|.|+ .+ .+.|.++.|
T Consensus 558 ~~~~L~~~L~~-Lr~~G~TVIvVeHdl~~i~~-ADrIi~Lgp 597 (993)
T 2ygr_A 558 DNRRLIETLTR-LRDLGNTLIVVEHDEDTIEH-ADWIVDIGP 597 (993)
T ss_dssp HHHHHHHHHHH-HHHTTCEEEEECCCHHHHHT-CSEEEEECS
T ss_pred HHHHHHHHHHH-HHHcCCEEEEECCCHHHHHh-CCEEEEecC
Confidence 67778887775 45678899999999999 74 788888866
No 163
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=24.90 E-value=1.8e+02 Score=20.25 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=31.7
Q ss_pred HhHHHHHHHHHHCCCcE--EecCCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 24 QGLQYLKASIKAMSIKV--IEVPGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 24 ~q~~~i~~~l~~~gi~~--~~~~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.-...+.++|+.+|+++ -...-+--=|-+..+++.+..+|.+|+|.-
T Consensus 36 ~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~ 84 (181)
T 4b4k_A 36 ETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAG 84 (181)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEE
T ss_pred HHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEe
Confidence 44566778889999883 222334444566677777778888988864
No 164
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=24.81 E-value=1.4e+02 Score=24.16 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=33.6
Q ss_pred HHHHHHHCCCcEE-ecCCc-chhHHHHHHHHHhhhCCCcE-EEEcCCCCc
Q 034412 29 LKASIKAMSIKVI-EVPGV-EADDVIGKLAVRSVDDGFKI-QVVSPNKDS 75 (95)
Q Consensus 29 i~~~l~~~gi~~~-~~~g~-EADDvIatla~~~~~~~~~v-~IvS~DkDl 75 (95)
+...++++|+.++ .++|. .-+++..++.......+.++ +++.+.|..
T Consensus 214 ~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~ 263 (675)
T 1itz_A 214 VSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIKVTTTIGF 263 (675)
T ss_dssp HHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTT
T ss_pred HHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHHCCCCeEEEEEeeeccc
Confidence 4467889999999 89998 88899988876433234454 456666655
No 165
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=24.65 E-value=61 Score=23.71 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=23.2
Q ss_pred CCcchhHHHHHHHHHhhhCCCcEEEEcCCC
Q 034412 44 PGVEADDVIGKLAVRSVDDGFKIQVVSPNK 73 (95)
Q Consensus 44 ~g~EADDvIatla~~~~~~~~~v~IvS~Dk 73 (95)
.|.-=-=+.+.+|..+.+.|.+|++++.|-
T Consensus 35 GGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 35 GGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp SSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 355555666777877788899999999985
No 166
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=24.42 E-value=59 Score=23.88 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.4
Q ss_pred hHHhHHHHHHHHHHCCCcEEecC
Q 034412 22 MVQGLQYLKASIKAMSIKVIEVP 44 (95)
Q Consensus 22 l~~q~~~i~~~l~~~gi~~~~~~ 44 (95)
+.+.+..++++++.+|++++..+
T Consensus 74 l~~gl~~l~~~~~~~Glp~~te~ 96 (292)
T 1o60_A 74 MEEGLKIFQELKDTFGVKIITDV 96 (292)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCcEEEec
Confidence 46778899999999999988854
No 167
>1fsu_A N-acetylgalactosamine-4-sulfatase; glycosaminoglycan degradation, hydrolase, glycopr lysosome; HET: ALS NAG; 2.50A {Homo sapiens} SCOP: c.76.1.2
Probab=24.39 E-value=49 Score=25.09 Aligned_cols=29 Identities=14% Similarity=0.309 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHhhhCC---CcEEEEcCCCCc
Q 034412 47 EADDVIGKLAVRSVDDG---FKIQVVSPNKDS 75 (95)
Q Consensus 47 EADDvIatla~~~~~~~---~~v~IvS~DkDl 75 (95)
..|+.||.+.....+.| ..++|+++|.-.
T Consensus 231 ~~D~~vG~ll~~L~~~g~~dnTiviftSDhG~ 262 (492)
T 1fsu_A 231 LMDEAVGNVTAALKSSGLWNNTVFIFSTDNGG 262 (492)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGEEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHcCCccCEEEEEECCCCC
Confidence 46888888888777765 368899999876
No 168
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=24.38 E-value=84 Score=18.86 Aligned_cols=32 Identities=9% Similarity=0.219 Sum_probs=18.8
Q ss_pred CCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc
Q 034412 44 PGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 44 ~g~EADDvIatla~~~~~~~~~v~IvS~DkDl 75 (95)
++..+-+++..+.......+.+|+++|+..+.
T Consensus 70 ~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~ 101 (152)
T 3heb_A 70 PDMTGIDILKLVKENPHTRRSPVVILTTTDDQ 101 (152)
T ss_dssp SSSBHHHHHHHHHHSTTTTTSCEEEEESCCCH
T ss_pred CCCcHHHHHHHHHhcccccCCCEEEEecCCCH
Confidence 45555566655543222345678888887764
No 169
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=24.27 E-value=79 Score=18.31 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=19.7
Q ss_pred CCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc
Q 034412 44 PGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 44 ~g~EADDvIatla~~~~~~~~~v~IvS~DkDl 75 (95)
++..+-+++..+.+.....+.+|+++|+..+.
T Consensus 58 ~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~ 89 (133)
T 3nhm_A 58 DGMDGYALCGHFRSEPTLKHIPVIFVSGYAPR 89 (133)
T ss_dssp SSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-
T ss_pred CCCCHHHHHHHHHhCCccCCCCEEEEeCCCcH
Confidence 45566667666654433346789999886655
No 170
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=24.26 E-value=1.2e+02 Score=24.61 Aligned_cols=47 Identities=11% Similarity=0.012 Sum_probs=32.9
Q ss_pred HHHHHHHCCCcEE-ecCCcchhHHHHHHHHHhhhCCCcEE-EEcCCCCc
Q 034412 29 LKASIKAMSIKVI-EVPGVEADDVIGKLAVRSVDDGFKIQ-VVSPNKDS 75 (95)
Q Consensus 29 i~~~l~~~gi~~~-~~~g~EADDvIatla~~~~~~~~~v~-IvS~DkDl 75 (95)
+...++++|++++ .++|.-.+++..++.......+.+++ ++-+.|-.
T Consensus 203 ~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~~~~P~lI~~~T~kg~ 251 (663)
T 3kom_A 203 TPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQQQKPTLICCKTVIGF 251 (663)
T ss_dssp HHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHCSSSCEEEEEECCTTT
T ss_pred HHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEEeccccc
Confidence 4567889999999 89999999999988754331344544 45555554
No 171
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=24.07 E-value=66 Score=23.12 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=21.6
Q ss_pred CcchhHHHHHHHHHhhhCCCcEEEEcCCC
Q 034412 45 GVEADDVIGKLAVRSVDDGFKIQVVSPNK 73 (95)
Q Consensus 45 g~EADDvIatla~~~~~~~~~v~IvS~Dk 73 (95)
|.-=-=+.+.+|..+.+.|.+|++++.|-
T Consensus 24 GvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 24 GVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 44444456667777778899999999995
No 172
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=24.00 E-value=42 Score=25.22 Aligned_cols=35 Identities=11% Similarity=0.121 Sum_probs=28.5
Q ss_pred cCCcch---hHHHHHHHHHhhhCCCcEEEEcCCCCc--cc
Q 034412 43 VPGVEA---DDVIGKLAVRSVDDGFKIQVVSPNKDS--QI 77 (95)
Q Consensus 43 ~~g~EA---DDvIatla~~~~~~~~~v~IvS~DkDl--QL 77 (95)
.+++.. .|.+--|+..+.+.|.+|.|+|++.+- ||
T Consensus 303 ~d~l~r~~~~~~~~~l~e~~~~~G~~v~ivs~~~e~G~qL 342 (357)
T 3j15_A 303 LDELLKGELREKVEELMDAVRYSRGEVVVVSSEHEGGEKL 342 (357)
T ss_dssp EHHHHTSSCCHHHHHHHHHHHHTTCEEEEECSSSTTHHHH
T ss_pred ecccccccchHHHHHHHHHHHHcCCEEEEECCCCCcchhh
Confidence 455555 677888888888899999999999988 66
No 173
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=23.89 E-value=1.4e+02 Score=18.97 Aligned_cols=57 Identities=26% Similarity=0.460 Sum_probs=36.6
Q ss_pred hhhcCCCCCChhhHHhHHHHHHHHHHCCCcEEec----CCcchhHHHHHHHHHhhhCCCcEEEEc
Q 034412 10 SYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEV----PGVEADDVIGKLAVRSVDDGFKIQVVS 70 (95)
Q Consensus 10 ~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~----~g~EADDvIatla~~~~~~~~~v~IvS 70 (95)
.||+.|+.+|..-...-..+-+.+..+|+..+++ +|.-.+=.|-+|+ ..|.+|.-++
T Consensus 39 gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~~v~v~vkG~G~Gr~~airaL~----~~Gl~I~~I~ 99 (117)
T 3r8n_K 39 GFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALN----AAGFRITNIT 99 (117)
T ss_dssp SCCGGGGSSHHHHHHHHHHHHHHHTTSCCCEEEEEEECSSSSTTHHHHHHH----HTTCEEEEEE
T ss_pred ccCCCccCCHHHHHHHHHHHHHHHHHhCCcEEEEEEeCCCccHHHHHHHHH----hCCCEEEEEE
Confidence 5888998887653222233444566789987664 5666776777774 3577776654
No 174
>3ed4_A Arylsulfatase; structural genomics, PSI-2, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, transferase; 1.70A {Escherichia coli}
Probab=23.72 E-value=52 Score=24.77 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=23.3
Q ss_pred chhHHHHHHHHHhhhCCC---cEEEEcCCCC
Q 034412 47 EADDVIGKLAVRSVDDGF---KIQVVSPNKD 74 (95)
Q Consensus 47 EADDvIatla~~~~~~~~---~v~IvS~DkD 74 (95)
..|+.||.+.....+.|. .++|+++|.-
T Consensus 276 ~~D~~iG~ll~~L~~~g~~dnTlVIftSDHG 306 (502)
T 3ed4_A 276 YLDAQVGKVLDKIKAMGEEDNTIVIFTSDNG 306 (502)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGEEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHcCCcCCeEEEEeCCCC
Confidence 569999999988887653 6889999988
No 175
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase, plasmid, formylglycine, phosphodiesterase; 1.42A {Rhizobium leguminosarum BV} PDB: 2w8s_A
Probab=23.69 E-value=51 Score=25.29 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=23.7
Q ss_pred chhHHHHHHHHHhhhCCC---cEEEEcCCCCc
Q 034412 47 EADDVIGKLAVRSVDDGF---KIQVVSPNKDS 75 (95)
Q Consensus 47 EADDvIatla~~~~~~~~---~v~IvS~DkDl 75 (95)
..|+.||.+.....+.|. .++|+++|.-.
T Consensus 325 ~~D~~iG~ll~~L~~~gl~dnTiIiftSDHG~ 356 (543)
T 2vqr_A 325 EVDDCLGRVFSYLDETGQWDDTLIIFTSDHGE 356 (543)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGEEEEEEESCCC
T ss_pred HHHHHHHHHHHHHHhcCCcCCeEEEEECcCCc
Confidence 579999999988877763 68899999875
No 176
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=23.54 E-value=1.7e+02 Score=22.89 Aligned_cols=47 Identities=13% Similarity=0.280 Sum_probs=33.8
Q ss_pred hHHhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCC
Q 034412 22 MVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPN 72 (95)
Q Consensus 22 l~~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~D 72 (95)
|.+.+..+.+-|.++|++++...| ++-++|..+++.. +...++++.|
T Consensus 98 l~~sL~~L~~~L~~~G~~L~v~~g-~~~~~l~~l~~~~---~~~~V~~~~~ 144 (525)
T 2j4d_A 98 LMECLVDLRKNLMKRGLNLLIRSG-KPEEILPSLAKDF---GARTVFAHKE 144 (525)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEES-CHHHHHHHHHHHH---TCSEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeC-CHHHHHHHHHHHc---CCCEEEEecc
Confidence 566678888888999999888776 6777877777654 3455555544
No 177
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=23.20 E-value=1.1e+02 Score=24.54 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=32.2
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEE-EEcCCCC
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQ-VVSPNKD 74 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~-IvS~DkD 74 (95)
.+.+...++++|++.+.++|...+++..++.+. .+.+++ .+-+.|-
T Consensus 197 ~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~---~~~P~lI~v~T~kg 243 (616)
T 3mos_A 197 MDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA---KHQPTAIIAKTFKG 243 (616)
T ss_dssp HHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC---CSSCEEEEEECCTT
T ss_pred hHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc---CCCCEEEEEEEecc
Confidence 345667889999999999999888999888542 234544 3444443
No 178
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=23.05 E-value=1.6e+02 Score=22.62 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=33.3
Q ss_pred hHHhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCCC
Q 034412 22 MVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNK 73 (95)
Q Consensus 22 l~~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~Dk 73 (95)
|.+.+..+.+-|.++|++++...| ++.+++..+++.. +...++++.|-
T Consensus 55 l~~sL~~L~~~L~~~G~~L~v~~g-~~~~~l~~l~~~~---~~~~v~~~~~~ 102 (484)
T 1owl_A 55 LQGCLQELQQRYQQAGSRLLLLQG-DPQHLIPQLAQQL---QAEAVYWNQDI 102 (484)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEES-CHHHHHHHHHHHT---TCSEEEEECCC
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHHc---CCCEEEEeccC
Confidence 456677788888889999888776 6777777766543 45566664443
No 179
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=22.99 E-value=70 Score=18.43 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=14.7
Q ss_pred CCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc
Q 034412 44 PGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 44 ~g~EADDvIatla~~~~~~~~~v~IvS~DkDl 75 (95)
++..+-+++..+.........+|+++|+..+.
T Consensus 58 ~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~ 89 (127)
T 3i42_A 58 PDTSGLALVKQLRALPMEKTSKFVAVSGFAKN 89 (127)
T ss_dssp SSSBHHHHHHHHHHSCCSSCCEEEEEECC-CT
T ss_pred CCCCHHHHHHHHHhhhccCCCCEEEEECCcch
Confidence 34444444444433221234566666665554
No 180
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=22.98 E-value=1.3e+02 Score=23.06 Aligned_cols=52 Identities=4% Similarity=-0.035 Sum_probs=36.2
Q ss_pred HhHHHHHHHHHHCCCcEEecC-CcchhHHHHHH-H----------------HHhhhCCCcEEEEcCCCCc
Q 034412 24 QGLQYLKASIKAMSIKVIEVP-GVEADDVIGKL-A----------------VRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 24 ~q~~~i~~~l~~~gi~~~~~~-g~EADDvIatl-a----------------~~~~~~~~~v~IvS~DkDl 75 (95)
+++..+++.++..|+.++..+ ..++=|.+..+ + +...+.|.+|++-|+=..+
T Consensus 101 e~~~~L~~~~~~~Gi~~~stpfD~~svd~l~~~~vd~~KIgS~~~~N~pLL~~va~~gKPViLStGmaTl 170 (385)
T 1vli_A 101 EWILPLLDYCREKQVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPMIFSTAGAEI 170 (385)
T ss_dssp GGHHHHHHHHHHTTCEEECBCCSHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTTCCH
T ss_pred HHHHHHHHHHHHcCCcEEEccCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEECCCCCH
Confidence 457889999999999999988 44444777665 1 2234456777777665544
No 181
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=22.95 E-value=68 Score=23.20 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=26.1
Q ss_pred CcEEecC-CcchhHHHHHHHHHhhhCCCcEEEEcCCC
Q 034412 38 IKVIEVP-GVEADDVIGKLAVRSVDDGFKIQVVSPNK 73 (95)
Q Consensus 38 i~~~~~~-g~EADDvIatla~~~~~~~~~v~IvS~Dk 73 (95)
+.++.-. |.---=+-+.+|....+.|.+|.+++.|-
T Consensus 21 i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~ 57 (329)
T 2woo_A 21 WIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDP 57 (329)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCT
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3344433 55556677778888888899999999884
No 182
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=22.86 E-value=72 Score=21.98 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=29.1
Q ss_pred CcEEecCCcchhHHHHHHHHHhhh-CCCcEEEEcCCCCc
Q 034412 38 IKVIEVPGVEADDVIGKLAVRSVD-DGFKIQVVSPNKDS 75 (95)
Q Consensus 38 i~~~~~~g~EADDvIatla~~~~~-~~~~v~IvS~DkDl 75 (95)
+.++..||++.-|+.+.+-. +.. .+++|.++|.+...
T Consensus 8 V~ill~~gf~~~e~~~p~ev-l~~~~~~~v~~vs~~~~~ 45 (231)
T 3noq_A 8 IGFLLFPEVQQLDLTGPHDV-LASLPDVQVHLIWKEPGP 45 (231)
T ss_dssp EEEECCTTCCHHHHHHHHHH-HTTSTTEEEEEEESSSEE
T ss_pred EEEEEeCCCcHHHHHHHHHH-HHcCCCCEEEEEECCCCc
Confidence 56778899999999997654 443 68999999987764
No 183
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=22.67 E-value=1.4e+02 Score=20.96 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHhhhCCCcEEEEcCCCCc
Q 034412 48 ADDVIGKLAVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 48 ADDvIatla~~~~~~~~~v~IvS~DkDl 75 (95)
+.-.+..+++...+.|++|.|++++..-
T Consensus 20 ~~~~~~~la~~L~~~G~~V~v~~~~~~~ 47 (439)
T 3fro_A 20 LAEALTAISEALASLGHEVLVFTPSHGR 47 (439)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4456788888888899999999966443
No 184
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=22.48 E-value=86 Score=18.84 Aligned_cols=32 Identities=9% Similarity=0.264 Sum_probs=17.3
Q ss_pred CCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc
Q 034412 44 PGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 44 ~g~EADDvIatla~~~~~~~~~v~IvS~DkDl 75 (95)
++..+-+++..+.........+|+++|+..+.
T Consensus 72 p~~~g~~l~~~l~~~~~~~~~piiils~~~~~ 103 (149)
T 1i3c_A 72 PKKDGREVLAEIKQNPDLKRIPVVVLTTSHNE 103 (149)
T ss_dssp SSSCHHHHHHHHHHCTTTTTSCEEEEESCCCH
T ss_pred CCCcHHHHHHHHHhCcCcCCCeEEEEECCCCh
Confidence 44455555555543211134578888876653
No 185
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=22.32 E-value=1.1e+02 Score=17.08 Aligned_cols=43 Identities=12% Similarity=-0.004 Sum_probs=25.4
Q ss_pred HHHHHHHHHCCCcEEecCCc-----chhHHHHHHHHHhhhC-----CCcEEEE
Q 034412 27 QYLKASIKAMSIKVIEVPGV-----EADDVIGKLAVRSVDD-----GFKIQVV 69 (95)
Q Consensus 27 ~~i~~~l~~~gi~~~~~~g~-----EADDvIatla~~~~~~-----~~~v~Iv 69 (95)
..++.+|+..|++.-..+=. +-.+....+....... ..+++.+
T Consensus 18 ~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i 70 (87)
T 1aba_A 18 DNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA 70 (87)
T ss_dssp HHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC
T ss_pred HHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEE
Confidence 34677888888885444322 3335555566555444 5677666
No 186
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=22.02 E-value=2.4e+02 Score=20.63 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=40.7
Q ss_pred hHHhHHHHHHHHHHCCCcEEecCCc-----chhHHHHHHHHHhhhCCCcEEEEcC-CCCc-cccc-CCeEEE
Q 034412 22 MVQGLQYLKASIKAMSIKVIEVPGV-----EADDVIGKLAVRSVDDGFKIQVVSP-NKDS-QILS-HSLCLL 85 (95)
Q Consensus 22 l~~q~~~i~~~l~~~gi~~~~~~g~-----EADDvIatla~~~~~~~~~v~IvS~-DkDl-QLv~-~~v~v~ 85 (95)
..+.+..+.+.++..|++++..+.. .-+++++..++.+.+.|..++-++- ..+| +++. -.+-|+
T Consensus 156 ~l~~i~~v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~~t~e~~~~vv~~~~vPVv 227 (295)
T 3glc_A 156 SIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYYVEKGFERIVAGCPVPIV 227 (295)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEECCTTTHHHHHHTCSSCEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeCCCHHHHHHHHHhCCCcEE
Confidence 4455667777788889998875432 1247778778878788877665542 2467 7763 334444
No 187
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=22.00 E-value=1.6e+02 Score=23.86 Aligned_cols=46 Identities=11% Similarity=0.184 Sum_probs=32.8
Q ss_pred HHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEE-EcCCCCc
Q 034412 29 LKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQV-VSPNKDS 75 (95)
Q Consensus 29 i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~I-vS~DkDl 75 (95)
+...++++|+.++.++|...+++..++.... +.+.+++| +-+.|-.
T Consensus 198 ~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~-~~~~P~lI~v~T~kG~ 244 (632)
T 3l84_A 198 VKMRFEAQGFEVLSINGHDYEEINKALEQAK-KSTKPCLIIAKTTIAK 244 (632)
T ss_dssp HHHHHHHTTCEEEEEETTCHHHHHHHHHHHH-TCSSCEEEEEECCTTT
T ss_pred HHHHHHHcCCeEEEEeeCCHHHHHHHHHHHH-hCCCCEEEEEeeEeee
Confidence 4567889999999999999999999887533 34455544 4555543
No 188
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=21.96 E-value=44 Score=25.61 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=27.7
Q ss_pred cchhHHHHHHHHHhhhCCCcEEEEcCCCCc--cccc
Q 034412 46 VEADDVIGKLAVRSVDDGFKIQVVSPNKDS--QILS 79 (95)
Q Consensus 46 ~EADDvIatla~~~~~~~~~v~IvS~DkDl--QLv~ 79 (95)
.|.+|++--|+..+.+.|.+|.|+|++..- |++.
T Consensus 369 ~~~~d~ve~L~e~~~~~G~~V~ivs~~~e~G~q~l~ 404 (437)
T 1dt9_A 369 IESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVK 404 (437)
T ss_dssp -CCCBHHHHHHHTCTTTTSCEEEECSSSHHHHHHHH
T ss_pred cccccHHHHHHHHHHHcCCEEEEECCCChhHHHHHH
Confidence 356688999999888899999999999877 6444
No 189
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=21.96 E-value=93 Score=18.86 Aligned_cols=31 Identities=6% Similarity=-0.026 Sum_probs=15.5
Q ss_pred CcchhHHHHHHHHHhhhCCCcEEEEcCCCCc
Q 034412 45 GVEADDVIGKLAVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 45 g~EADDvIatla~~~~~~~~~v~IvS~DkDl 75 (95)
+..+-+++..+-........+|+++|+..+.
T Consensus 63 ~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~ 93 (154)
T 3gt7_A 63 EMDGYALCRWLKGQPDLRTIPVILLTILSDP 93 (154)
T ss_dssp SSCHHHHHHHHHHSTTTTTSCEEEEECCCSH
T ss_pred CCCHHHHHHHHHhCCCcCCCCEEEEECCCCh
Confidence 4444445444433221234567777766554
No 190
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=21.95 E-value=52 Score=18.93 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=17.4
Q ss_pred CCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc
Q 034412 44 PGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 44 ~g~EADDvIatla~~~~~~~~~v~IvS~DkDl 75 (95)
++..+-+++..+-......+.+|+++|+..+.
T Consensus 57 ~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~ 88 (127)
T 2jba_A 57 PGGSGIQFIKHLRRESMTRDIPVVMLTARGEE 88 (127)
T ss_dssp TTEEHHHHHHHHHTSTTTTTSCEEEEEETTHH
T ss_pred CCCCHHHHHHHHHhCcccCCCCEEEEeCCCCH
Confidence 34444455554443222245688888877654
No 191
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=21.76 E-value=75 Score=23.05 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=24.2
Q ss_pred hcCCCCCC--h--hhHHhHHHHHHHHHHCCCcEEecC
Q 034412 12 KNNRPPTP--D--TMVQGLQYLKASIKAMSIKVIEVP 44 (95)
Q Consensus 12 KanR~~~p--~--~l~~q~~~i~~~l~~~gi~~~~~~ 44 (95)
||+|..+- . .+...+..++++++.+|++++...
T Consensus 46 KapRTs~~sf~G~g~~~GL~~l~~~~~e~Glp~~te~ 82 (267)
T 2nwr_A 46 KANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDI 82 (267)
T ss_dssp CTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEEEEEC
T ss_pred cCCCCCCCCCcCccHHHHHHHHHHHHHhcCCeEEEec
Confidence 45887432 1 256778889999999999988744
No 192
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=21.65 E-value=1.4e+02 Score=24.18 Aligned_cols=47 Identities=9% Similarity=0.067 Sum_probs=32.5
Q ss_pred HHHHHHHCCCcEE-ecCCc-chhHHHHHHHHHhhhCCCcE-EEEcCCCCc
Q 034412 29 LKASIKAMSIKVI-EVPGV-EADDVIGKLAVRSVDDGFKI-QVVSPNKDS 75 (95)
Q Consensus 29 i~~~l~~~gi~~~-~~~g~-EADDvIatla~~~~~~~~~v-~IvS~DkDl 75 (95)
+.+.++++|++.+ .++|. .-+++..++.......+.++ +++-+.|-.
T Consensus 203 ~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~~~~~P~lI~~~T~kg~ 252 (680)
T 1gpu_A 203 VAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGY 252 (680)
T ss_dssp HHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHCTTSCEEEEEECCTTT
T ss_pred HHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHCCCCCEEEEEEeeccc
Confidence 4456788999999 99998 88888888875443234454 445556544
No 193
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.55 E-value=72 Score=18.42 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=17.4
Q ss_pred CCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc
Q 034412 44 PGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 44 ~g~EADDvIatla~~~~~~~~~v~IvS~DkDl 75 (95)
++..+-+++..+.........+|+++|+..+.
T Consensus 66 ~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~ 97 (140)
T 1k68_A 66 PKKDGREVLAEIKSDPTLKRIPVVVLSTSINE 97 (140)
T ss_dssp SSSCHHHHHHHHHHSTTGGGSCEEEEESCCCH
T ss_pred CcccHHHHHHHHHcCcccccccEEEEecCCcH
Confidence 34445555555544322234678888876654
No 194
>2w5q_A Processed glycerol phosphate lipoteichoic acid synthase; transmembrane, cell WALL biogenesis/degradation, LTAS, membrane, secreted; 1.20A {Staphylococcus aureus} PDB: 2w5s_A* 2w5t_A* 2w5r_A*
Probab=21.52 E-value=68 Score=23.87 Aligned_cols=28 Identities=7% Similarity=0.082 Sum_probs=22.2
Q ss_pred chhHHHHHHHHHhhhCC---CcEEEEcCCCC
Q 034412 47 EADDVIGKLAVRSVDDG---FKIQVVSPNKD 74 (95)
Q Consensus 47 EADDvIatla~~~~~~~---~~v~IvS~DkD 74 (95)
..|+.||.+.....+.| ..++|+++|.-
T Consensus 230 ~~D~~iG~ll~~Lk~~g~~dnTiIVf~sDHG 260 (424)
T 2w5q_A 230 YLDEALEEYINDLKKKGLYDNSVIMIYGDHY 260 (424)
T ss_dssp HHHHHHHHHHHHHHHTTCSTTSEEEEEECSC
T ss_pred HHHHHHHHHHHHHHhcCCcCCeEEEEECCCC
Confidence 46888898888777765 47999999984
No 195
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=21.37 E-value=2e+02 Score=23.07 Aligned_cols=46 Identities=9% Similarity=0.031 Sum_probs=33.2
Q ss_pred HHHHHHHCCCcEE-ecCCcchhHHHHHHHHHhhhCCCcE-EEEcCCCCc
Q 034412 29 LKASIKAMSIKVI-EVPGVEADDVIGKLAVRSVDDGFKI-QVVSPNKDS 75 (95)
Q Consensus 29 i~~~l~~~gi~~~-~~~g~EADDvIatla~~~~~~~~~v-~IvS~DkDl 75 (95)
+...++++|++++ .++|...+++..++..... .+.++ +++-+.|-.
T Consensus 205 ~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~-~~~P~lI~~~t~kg~ 252 (651)
T 2e6k_A 205 VLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL-DERPTLIAVRSHIGF 252 (651)
T ss_dssp HHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH-SSSCEEEEEECCTTT
T ss_pred HHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH-CCCCEEEEEEeEecc
Confidence 4567889999999 8999999999988876433 34454 445666654
No 196
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=21.25 E-value=79 Score=23.88 Aligned_cols=29 Identities=7% Similarity=0.051 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhhhCCCcEEEEcCCCCc--cc
Q 034412 49 DDVIGKLAVRSVDDGFKIQVVSPNKDS--QI 77 (95)
Q Consensus 49 DDvIatla~~~~~~~~~v~IvS~DkDl--QL 77 (95)
.|.+--|+..+.+.|.+|.|+|++.+- ||
T Consensus 319 r~~~~~l~e~v~~~Gg~V~ivs~~~e~G~qL 349 (364)
T 3obw_A 319 RLTIERMLEDIENKRGEVILVPKESPIYFEL 349 (364)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECTTSTTHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCCCCchhh
Confidence 456777888888899999999999988 66
No 197
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=21.18 E-value=1.2e+02 Score=20.66 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=28.5
Q ss_pred CcEEec-----CCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc
Q 034412 38 IKVIEV-----PGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 38 i~~~~~-----~g~EADDvIatla~~~~~~~~~v~IvS~DkDl 75 (95)
+.++.. +|+|.-++.+.+-. +...|++|.++|.+..-
T Consensus 9 v~ill~~~~~~~g~~~~E~~~p~~~-l~~ag~~v~~~s~~g~~ 50 (232)
T 1vhq_A 9 IGVILSGCGVYDGSEIHEAVLTLLA-ISRSGAQAVCFAPDKQQ 50 (232)
T ss_dssp EEEECCSBSTTTSBCHHHHHHHHHH-HHHTTCEEEEEECSSBC
T ss_pred EEEEEccCCCCCCeeHHHHHHHHHH-HHHCCCEEEEEecCCCC
Confidence 445566 99999999987653 55678999999988654
No 198
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=21.16 E-value=1e+02 Score=17.95 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=18.2
Q ss_pred CCcchhHHHHHHHHHh--hhCCCcEEEEcCCCCc
Q 034412 44 PGVEADDVIGKLAVRS--VDDGFKIQVVSPNKDS 75 (95)
Q Consensus 44 ~g~EADDvIatla~~~--~~~~~~v~IvS~DkDl 75 (95)
++..+-+++..+.... .....+|+++|+..+.
T Consensus 71 ~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~ 104 (146)
T 3ilh_A 71 PGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDP 104 (146)
T ss_dssp SSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCH
T ss_pred CCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCCh
Confidence 4555556665554422 2345677777776655
No 199
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=20.86 E-value=1.5e+02 Score=19.37 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=27.7
Q ss_pred CcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCCCC
Q 034412 38 IKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNKD 74 (95)
Q Consensus 38 i~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~DkD 74 (95)
+.++..+|+|.-|+.+.+- .+...|+++.++|.+..
T Consensus 6 v~ill~~g~~~~e~~~~~~-~l~~ag~~v~~vs~~~~ 41 (197)
T 2rk3_A 6 ALVILAKGAEEMETVIPVD-VMRRAGIKVTVAGLAGK 41 (197)
T ss_dssp EEEEECTTCCHHHHHHHHH-HHHHTTCEEEEEETTCS
T ss_pred EEEEECCCCcHHHHHHHHH-HHHHCCCEEEEEEcCCC
Confidence 4567789999999988654 45556899999997754
No 200
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=20.82 E-value=88 Score=18.51 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=17.3
Q ss_pred CCcchhHHHHHHHHHhhhCCCcEEEEcCCCCc
Q 034412 44 PGVEADDVIGKLAVRSVDDGFKIQVVSPNKDS 75 (95)
Q Consensus 44 ~g~EADDvIatla~~~~~~~~~v~IvS~DkDl 75 (95)
++..+-+++..+.......+.+|+++|+..+.
T Consensus 63 ~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~ 94 (147)
T 2zay_A 63 PKISGMDLFNSLKKNPQTASIPVIALSGRATA 94 (147)
T ss_dssp SSSCHHHHHHHHHTSTTTTTSCEEEEESSCCH
T ss_pred CCCCHHHHHHHHHcCcccCCCCEEEEeCCCCH
Confidence 34445555554443212245678888876664
No 201
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=20.76 E-value=33 Score=22.78 Aligned_cols=30 Identities=10% Similarity=0.256 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhhCCCcEEEEcCCCCc-cccc
Q 034412 50 DVIGKLAVRSVDDGFKIQVVSPNKDS-QILS 79 (95)
Q Consensus 50 DvIatla~~~~~~~~~v~IvS~DkDl-QLv~ 79 (95)
..++-|+.++-..|.+|+|.+.|... +-++
T Consensus 26 ~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD 56 (150)
T 3sxu_A 26 QLVCEIAAERWRSGKRVLIACEDEKQAYRLD 56 (150)
T ss_dssp HHHHHHHHHHHHTTCCEEEECSSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHH
Confidence 34555666777778888888877765 4443
No 202
>1p49_A Steryl-sulfatase; steroid biosynthesis, steroid sulfatase, estrone sulfate, dehydroepiandrosterone sulfate, human placental enzyme; HET: ALS BOG NAG; 2.60A {Homo sapiens} SCOP: c.76.1.2
Probab=20.45 E-value=65 Score=24.97 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=23.5
Q ss_pred chhHHHHHHHHHhhhCCC---cEEEEcCCCCc
Q 034412 47 EADDVIGKLAVRSVDDGF---KIQVVSPNKDS 75 (95)
Q Consensus 47 EADDvIatla~~~~~~~~---~v~IvS~DkDl 75 (95)
+.|+.||-+.....+.|. .++|+++|.-.
T Consensus 293 ~~D~~vG~il~~L~~~g~~dnTiviftsDhG~ 324 (562)
T 1p49_A 293 EMDWSVGQILNLLDELRLANDTLIYFTSDQGA 324 (562)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGEEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHcCCccCeEEEEECCCCc
Confidence 578889998888877663 68899999876
No 203
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=20.38 E-value=79 Score=23.27 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=25.0
Q ss_pred cCCcchhHHHHHHHHHhh--hCCCcEEEEcCCC
Q 034412 43 VPGVEADDVIGKLAVRSV--DDGFKIQVVSPNK 73 (95)
Q Consensus 43 ~~g~EADDvIatla~~~~--~~~~~v~IvS~Dk 73 (95)
..|.---=+-+.+|.... +.|.+|++++.|-
T Consensus 26 KGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 26 KGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp STTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 346666777888888888 8899999999994
No 204
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=20.22 E-value=1.4e+02 Score=23.70 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=33.5
Q ss_pred hHHhHHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEEcCC
Q 034412 22 MVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPN 72 (95)
Q Consensus 22 l~~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~D 72 (95)
|.+.+..+++-|..+|++.+...| ++.++|..|++.. +...+.++.|
T Consensus 66 l~~sL~~L~~~L~~~G~~L~v~~G-~~~~vl~~L~~~~---~~~~V~~n~~ 112 (537)
T 3fy4_A 66 LLESLKDLDSSLKKLGSRLLVFKG-EPGEVLVRCLQEW---KVKRLCFEYD 112 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEES-CHHHHHHHHHTTS---CEEEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCceEEEEC-CHHHHHHHHHHHc---CCCEEEEecc
Confidence 556678888889999999888888 7777877776543 3444555444
No 205
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=20.09 E-value=1.1e+02 Score=25.09 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=28.3
Q ss_pred HHHHHHHHHHCCCcEEecCCcchhHHHHHHHHHhhhCCCcEEEE-cCCCC
Q 034412 26 LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVV-SPNKD 74 (95)
Q Consensus 26 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~Iv-S~DkD 74 (95)
-..+..+|...||.++...+.-.++++. .+.+.+.+|+.+ |.|..
T Consensus 527 a~~va~~l~~aGfeVi~~g~~~tee~v~----aa~e~~adiv~lSsl~~~ 572 (637)
T 1req_B 527 EGFSSPVWHIAGIDTPQVEGGTTAEIVE----AFKKSGAQVADLCSSAKV 572 (637)
T ss_dssp HHHHHHHHHHTTCBCCEEECCCHHHHHH----HHHHHTCSEEEEECCHHH
T ss_pred HHHHHHHHHhCCeeEEeCCCCCCHHHHH----HHHhcCCCEEEEecccHH
Confidence 4567788899999998887766644433 333345566644 44543
No 206
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=20.07 E-value=1.2e+02 Score=21.78 Aligned_cols=35 Identities=31% Similarity=0.184 Sum_probs=23.7
Q ss_pred HHCCCcEEecCCc--------chhHHHHHHHHHhhhCCCcEEEEcCCC
Q 034412 34 KAMSIKVIEVPGV--------EADDVIGKLAVRSVDDGFKIQVVSPNK 73 (95)
Q Consensus 34 ~~~gi~~~~~~g~--------EADDvIatla~~~~~~~~~v~IvS~Dk 73 (95)
...|+-++...+. -+|=.|-.+|... ..+|||+|+
T Consensus 92 ~k~g~L~~TPs~~v~G~r~~sydD~~iL~~A~~~-----~g~IVSND~ 134 (223)
T 3v33_A 92 EKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYES-----DGIVVSNDT 134 (223)
T ss_dssp HHTTCEEEECEEEETTEEEECCHHHHHHHHHHHT-----TCEEECSCC
T ss_pred HHCCCEEECCCCCcCCccccccchHHHHHHHHHc-----CCEEEeCcc
Confidence 3468888777764 3566677777542 457999885
Done!