Your job contains 1 sequence.
>034414
MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV
DDGFKIQVVSPNKDSQILSHSLCLLRIAPRGFELV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 034414
(95 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2083775 - symbol:AT3G52050 species:3702 "Arabi... 381 3.1e-35 1
TIGR_CMR|ECH_0080 - symbol:ECH_0080 "DNA polymerase I" sp... 174 5.7e-12 1
TIGR_CMR|GSU_0541 - symbol:GSU_0541 "DNA polymerase I" sp... 163 7.9e-11 1
TIGR_CMR|DET_1391 - symbol:DET_1391 "DNA-directed DNA pol... 157 3.5e-10 1
TIGR_CMR|SO_4669 - symbol:SO_4669 "DNA polymerase I" spec... 156 4.6e-10 1
UNIPROTKB|P00582 - symbol:polA species:83333 "Escherichia... 151 1.6e-09 1
TIGR_CMR|CPS_4978 - symbol:CPS_4978 "DNA polymerase I" sp... 151 1.6e-09 1
UNIPROTKB|P0A550 - symbol:polA "DNA polymerase I" species... 150 2.0e-09 1
UNIPROTKB|Q9KVN3 - symbol:VC_0108 "DNA polymerase I" spec... 144 9.0e-09 1
TIGR_CMR|VC_0108 - symbol:VC_0108 "DNA polymerase I" spec... 144 9.0e-09 1
TIGR_CMR|NSE_0675 - symbol:NSE_0675 "DNA polymerase I" sp... 140 2.1e-08 1
TIGR_CMR|APH_0001 - symbol:APH_0001 "DNA polymerase I" sp... 137 4.5e-08 1
UNIPROTKB|Q48PV5 - symbol:polA "DNA polymerase I" species... 130 5.4e-08 2
TIGR_CMR|CBU_1795 - symbol:CBU_1795 "DNA polymerase I" sp... 123 1.7e-07 2
TIGR_CMR|BA_4831 - symbol:BA_4831 "DNA polymerase I" spec... 130 2.6e-07 1
UNIPROTKB|P38506 - symbol:ygdG "YgdG" species:83333 "Esch... 116 1.0e-06 1
TIGR_CMR|SO_1549 - symbol:SO_1549 "exodeoxyribonuclease I... 114 1.9e-06 1
TIGR_CMR|SPO_3844 - symbol:SPO_3844 "DNA polymerase I" sp... 122 2.0e-06 1
UNIPROTKB|Q9KTK4 - symbol:xni "Protein Xni" species:24327... 113 2.5e-06 1
TIGR_CMR|VC_0898 - symbol:VC_0898 "exodeoxyribonuclease I... 113 2.5e-06 1
UNIPROTKB|Q0C2B4 - symbol:polA "DNA polymerase I" species... 120 3.3e-06 1
UNIPROTKB|Q3ABL3 - symbol:polA "DNA polymerase" species:2... 117 5.9e-06 1
TIGR_CMR|CHY_1650 - symbol:CHY_1650 "DNA polymerase I" sp... 117 5.9e-06 1
DICTYBASE|DDB_G0267464 - symbol:polA "mitochondrial DNA p... 118 8.4e-06 1
TAIR|locus:2036293 - symbol:AT1G34380 species:3702 "Arabi... 107 2.0e-05 1
TIGR_CMR|CJE_0383 - symbol:CJE_0383 "DNA polymerase type ... 99 0.00053 1
TIGR_CMR|BA_1606 - symbol:BA_1606 "5'-3' exonuclease fami... 91 0.00083 1
>TAIR|locus:2083775 [details] [associations]
symbol:AT3G52050 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
InterPro:IPR002421 InterPro:IPR008918 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739 SMART:SM00279
SMART:SM00475 EMBL:CP002686 GO:GO:0003677 GO:GO:0008152
EMBL:AL049711 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
IPI:IPI00846770 RefSeq:NP_001078270.1 UniGene:At.50269
ProteinModelPortal:A8MQG8 SMR:A8MQG8 STRING:A8MQG8 PaxDb:A8MQG8
PRIDE:A8MQG8 EnsemblPlants:AT3G52050.3 GeneID:824368
KEGG:ath:AT3G52050 TAIR:At3g52050 HOGENOM:HOG000015113 OMA:HDGVPYG
PhylomeDB:A8MQG8 ProtClustDB:CLSN2680900 Genevestigator:A8MQG8
Uniprot:A8MQG8
Length = 448
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 76/95 (80%), Positives = 86/95 (90%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
MNFRHTLYP+YK+NRPPTPDT+VQGLQYLKASIKAMSIKVIEVPGVEADDVIG LA+RS+
Sbjct: 202 MNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLAMRSI 261
Query: 61 DDGFKIQVVSPNKDS-QILSHSLCLLRIAPRGFEL 94
GFK++VVSP+KD QILS SL LLR+ PRG E+
Sbjct: 262 SAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEM 296
>TIGR_CMR|ECH_0080 [details] [associations]
symbol:ECH_0080 "DNA polymerase I" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00475 SMART:SM00482 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593
HOGENOM:HOG000020999 RefSeq:YP_506910.1 ProteinModelPortal:Q2GI23
STRING:Q2GI23 GeneID:3927608 KEGG:ech:ECH_0080 PATRIC:20575721
BioCyc:ECHA205920:GJNR-80-MONOMER Uniprot:Q2GI23
Length = 944
Score = 174 (66.3 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRP PD ++ L+ ++ A +I EV G EADDVI L+ +
Sbjct: 63 NFRHNIYPEYKGNRPKLPDDLIPQFSLLREAVNAFNIASEEVVGYEADDVIATLSKKYCK 122
Query: 62 -DGFKIQVVSPNKDS-QILSHSLCL 84
G K+ VV+ +KD Q+L +++C+
Sbjct: 123 LQGVKVTVVTSDKDLLQLLKYNICI 147
>TIGR_CMR|GSU_0541 [details] [associations]
symbol:GSU_0541 "DNA polymerase I" species:243231
"Geobacter sulfurreducens PCA" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006308 "DNA catabolic process" evidence=ISS]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HSSP:P00582
RefSeq:NP_951599.1 ProteinModelPortal:Q74FR5 SMR:Q74FR5
GeneID:2685802 KEGG:gsu:GSU0541 PATRIC:22023837
BioCyc:GSUL243231:GH27-525-MONOMER Uniprot:Q74FR5
Length = 891
Score = 163 (62.4 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 36/84 (42%), Positives = 52/84 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK NR PD +V + +K ++A SI V+E+ G EADD+IG +A R +
Sbjct: 66 FRTEIYPDYKANRAAMPDDLVPQIGPIKEMVRAFSIPVLELEGYEADDIIGTIARRCEEQ 125
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + VV+ +KD QI+S + LL
Sbjct: 126 GLEAVVVTGDKDLMQIVSDRIRLL 149
>TIGR_CMR|DET_1391 [details] [associations]
symbol:DET_1391 "DNA-directed DNA polymerase I"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002421 InterPro:IPR002562
InterPro:IPR003583 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF01612
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593
HOGENOM:HOG000020999 RefSeq:YP_182100.1 ProteinModelPortal:Q3Z6P9
STRING:Q3Z6P9 GeneID:3229334 KEGG:det:DET1391 PATRIC:21609809
ProtClustDB:CLSK836946 BioCyc:DETH243164:GJNF-1392-MONOMER
Uniprot:Q3Z6P9
Length = 903
Score = 157 (60.3 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 33/90 (36%), Positives = 52/90 (57%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH ++ +YK RPP PD +V L ++ + A ++ V E G EADDV+G LA R+
Sbjct: 67 FRHEMFKAYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLATRAAAA 126
Query: 63 GFKIQVVSPNKDS-QILSHSLCLLRIAPRG 91
G ++ + S + DS Q++ + +L P G
Sbjct: 127 GMEVIIASGDADSMQLVGPDIRILYPGPAG 156
>TIGR_CMR|SO_4669 [details] [associations]
symbol:SO_4669 "DNA polymerase I" species:211586
"Shewanella oneidensis MR-1" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 HSSP:P00582 HOGENOM:HOG000020999
RefSeq:NP_720184.1 ProteinModelPortal:Q8E8J5 GeneID:1172251
KEGG:son:SO_4669 PATRIC:23529003 ProtClustDB:CLSK907759
Uniprot:Q8E8J5
Length = 922
Score = 156 (60.0 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 31/84 (36%), Positives = 54/84 (64%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ LY YK +RPP PD + ++ L I+A+ + +I +PGVEADDVIG +A R+ +
Sbjct: 69 FRNDLYQEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGTIARRASRE 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
+ + + +KD +Q++ ++ L+
Sbjct: 129 NRAVLISTGDKDMAQLVDENITLI 152
>UNIPROTKB|P00582 [details] [associations]
symbol:polA species:83333 "Escherichia coli K-12"
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IDA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA;IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA;IMP]
[GO:0006260 "DNA replication" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0006261
GO:GO:0005622 SUPFAM:SSF53098 EMBL:L19201 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
EMBL:V00317 EMBL:J01663 EMBL:J01664 PIR:A92360 RefSeq:NP_418300.1
RefSeq:YP_491586.1 PDB:1D8Y PDB:1D9D PDB:1D9F PDB:1DPI PDB:1KFD
PDB:1KFS PDB:1KLN PDB:1KRP PDB:1KSP PDB:1QSL PDB:2KFN PDB:2KFZ
PDB:2KZM PDB:2KZZ PDBsum:1D8Y PDBsum:1D9D PDBsum:1D9F PDBsum:1DPI
PDBsum:1KFD PDBsum:1KFS PDBsum:1KLN PDBsum:1KRP PDBsum:1KSP
PDBsum:1QSL PDBsum:2KFN PDBsum:2KFZ PDBsum:2KZM PDBsum:2KZZ
ProteinModelPortal:P00582 SMR:P00582 DIP:DIP-10524N IntAct:P00582
MINT:MINT-1225247 SWISS-2DPAGE:P00582 PaxDb:P00582 PRIDE:P00582
EnsemblBacteria:EBESCT00000001399 EnsemblBacteria:EBESCT00000014390
GeneID:12933188 GeneID:948356 KEGG:ecj:Y75_p3322 KEGG:eco:b3863
PATRIC:32123225 EchoBASE:EB0739 EcoGene:EG10746
HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
BioCyc:EcoCyc:EG10746-MONOMER BioCyc:ECOL316407:JW3835-MONOMER
BioCyc:MetaCyc:EG10746-MONOMER SABIO-RK:P00582 BindingDB:P00582
ChEMBL:CHEMBL4298 DrugBank:DB00548 EvolutionaryTrace:P00582
Genevestigator:P00582 TIGRFAMs:TIGR00593 Uniprot:P00582
Length = 928
Score = 151 (58.2 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 32/84 (38%), Positives = 54/84 (64%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 69 FRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 129 GRPVLISTGDKDMAQLVTPNITLI 152
>TIGR_CMR|CPS_4978 [details] [associations]
symbol:CPS_4978 "DNA polymerase I" species:167879
"Colwellia psychrerythraea 34H" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_271617.1 ProteinModelPortal:Q47UA6 SMR:Q47UA6
STRING:Q47UA6 GeneID:3519378 KEGG:cps:CPS_4978 PATRIC:21472749
BioCyc:CPSY167879:GI48-4979-MONOMER Uniprot:Q47UA6
Length = 936
Score = 151 (58.2 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 31/84 (36%), Positives = 54/84 (64%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ ++P YK NRPP PD + + + I AM + ++ +PGVEADDVIG LA ++ +
Sbjct: 79 FRNDMFPEYKANRPPMPDDLRTQIAPIHEIITAMGLPLLVIPGVEADDVIGTLAKQADEL 138
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 139 GIETVISTGDKDMAQLVTKHVRLI 162
>UNIPROTKB|P0A550 [details] [associations]
symbol:polA "DNA polymerase I" species:1773 "Mycobacterium
tuberculosis" [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:BX842577 GO:GO:0005622
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 EMBL:L11920 PIR:C70559
RefSeq:NP_216145.1 RefSeq:NP_336121.1 RefSeq:YP_006515018.1
ProteinModelPortal:P0A550 SMR:P0A550 PRIDE:P0A550
EnsemblBacteria:EBMYCT00000000077 EnsemblBacteria:EBMYCT00000072282
GeneID:13316408 GeneID:885074 GeneID:924198 KEGG:mtc:MT1665
KEGG:mtu:Rv1629 KEGG:mtv:RVBD_1629 PATRIC:18125424
TubercuList:Rv1629 HOGENOM:HOG000020997 Uniprot:P0A550
Length = 904
Score = 150 (57.9 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 79 FRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQAENE 138
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++D+ Q++S + +L
Sbjct: 139 GYRVLVVTGDRDALQLVSDDVTVL 162
>UNIPROTKB|Q9KVN3 [details] [associations]
symbol:VC_0108 "DNA polymerase I" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR003583
InterPro:IPR008918 InterPro:IPR012337 InterPro:IPR018320
InterPro:IPR019760 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868
PROSITE:PS00447 SMART:SM00278 SMART:SM00279 SMART:SM00474
SMART:SM00475 SMART:SM00482 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HSSP:P00582 PIR:B82364 RefSeq:NP_229767.1
ProteinModelPortal:Q9KVN3 SMR:Q9KVN3 DNASU:2614459 GeneID:2614459
KEGG:vch:VC0108 PATRIC:20079264 Uniprot:Q9KVN3
Length = 934
Score = 144 (55.7 bits), Expect = 9.0e-09, P = 9.0e-09
Identities = 30/84 (35%), Positives = 52/84 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK +RPP PD + ++ L I+AM + ++ + GVEADDVIG LA ++
Sbjct: 69 FRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 129 GMPVLISTGDKDMAQLVDDNITLI 152
>TIGR_CMR|VC_0108 [details] [associations]
symbol:VC_0108 "DNA polymerase I" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HSSP:P00582 PIR:B82364 RefSeq:NP_229767.1
ProteinModelPortal:Q9KVN3 SMR:Q9KVN3 DNASU:2614459 GeneID:2614459
KEGG:vch:VC0108 PATRIC:20079264 Uniprot:Q9KVN3
Length = 934
Score = 144 (55.7 bits), Expect = 9.0e-09, P = 9.0e-09
Identities = 30/84 (35%), Positives = 52/84 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK +RPP PD + ++ L I+AM + ++ + GVEADDVIG LA ++
Sbjct: 69 FRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 129 GMPVLISTGDKDMAQLVDDNITLI 152
>TIGR_CMR|NSE_0675 [details] [associations]
symbol:NSE_0675 "DNA polymerase I" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF02739 PRINTS:PR00868 SMART:SM00278
SMART:SM00279 SMART:SM00475 SMART:SM00482 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335
OMA:EQRRYAK ProtClustDB:PRK05755 RefSeq:YP_506553.1
ProteinModelPortal:Q2GD93 STRING:Q2GD93 GeneID:3932157
KEGG:nse:NSE_0675 PATRIC:22681369
BioCyc:NSEN222891:GHFU-689-MONOMER Uniprot:Q2GD93
Length = 829
Score = 140 (54.3 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR T+Y +YK NRPP P + L+ + +++ +E+ G EADDVI L +
Sbjct: 63 FRETIYNNYKANRPPVPGNLTPQFALLRECVDVLNLNPLEIEGFEADDVIATLVRKFSKS 122
Query: 63 GFKIQVVSPNKD-SQILSHSL 82
KI+++S +KD Q+++ ++
Sbjct: 123 DLKIKILSTDKDLMQLVNENV 143
>TIGR_CMR|APH_0001 [details] [associations]
symbol:APH_0001 "DNA polymerase I" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_504640.1 ProteinModelPortal:Q2GLW1 STRING:Q2GLW1
GeneID:3930741 KEGG:aph:APH_0001 PATRIC:20948540
BioCyc:APHA212042:GHPM-43-MONOMER Uniprot:Q2GLW1
Length = 853
Score = 137 (53.3 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 29/82 (35%), Positives = 47/82 (57%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRHT+Y YK NRP P+ + L+ +++A +I EV EADDVI L +
Sbjct: 66 NFRHTMYSEYKTNRPKAPEDLSLQCAPLREAVEAFNIVSEEVLNYEADDVIATLCTKYAS 125
Query: 62 DGFKIQVVSPNKDS-QILSHSL 82
++++S +KD Q+L+ ++
Sbjct: 126 SNVGVRILSADKDLLQLLNDNV 147
>UNIPROTKB|Q48PV5 [details] [associations]
symbol:polA "DNA polymerase I" species:264730 "Pseudomonas
syringae pv. phaseolicola 1448A" [GO:0008408 "3'-5' exonuclease
activity" evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098
EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0008408 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_272564.1 ProteinModelPortal:Q48PV5 SMR:Q48PV5
STRING:Q48PV5 GeneID:3558423 KEGG:psp:PSPPH_0259 PATRIC:19969530
Uniprot:Q48PV5
Length = 921
Score = 130 (50.8 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRP PD + + L A +K M ++ V GVEADDVIG LA S
Sbjct: 66 FRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLARSSAAA 125
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
+ + + +KD +Q++ + L+
Sbjct: 126 DRPVIISTGDKDMAQLVDGHITLV 149
Score = 31 (16.0 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 4/9 (44%), Positives = 9/9 (100%)
Query: 87 IAPRGFELV 95
+AP+G++L+
Sbjct: 687 VAPKGYKLL 695
>TIGR_CMR|CBU_1795 [details] [associations]
symbol:CBU_1795 "DNA polymerase I" species:227377
"Coxiella burnetii RSA 493" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755 TIGRFAMs:TIGR00593
RefSeq:NP_820774.2 ProteinModelPortal:Q83AT5 PRIDE:Q83AT5
GeneID:1209706 KEGG:cbu:CBU_1795 PATRIC:17932329
BioCyc:CBUR227377:GJ7S-1767-MONOMER Uniprot:Q83AT5
Length = 902
Score = 123 (48.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH LY +YK NR P+ + ++ L I+A+ +I G EADDVI LA ++ +
Sbjct: 76 FRHDLYHTYKANRIEMPNELRSQIKPLFEIIRALGFPLIIKEGYEADDVIATLAKKAKEK 135
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +QI++ + L+
Sbjct: 136 GMPVLVSTGDKDLAQIVNEHVTLV 159
Score = 33 (16.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 87 IAPRGFELV 95
IAP GF++V
Sbjct: 668 IAPPGFQMV 676
>TIGR_CMR|BA_4831 [details] [associations]
symbol:BA_4831 "DNA polymerase I" species:198094 "Bacillus
anthracis str. Ames" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279 SMART:SM00474
SMART:SM00475 SMART:SM00482 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755 TIGRFAMs:TIGR00593
RefSeq:NP_847034.1 RefSeq:YP_021476.2 HSSP:P52026
ProteinModelPortal:Q81L03 SMR:Q81L03 IntAct:Q81L03
EnsemblBacteria:EBBACT00000010925 EnsemblBacteria:EBBACT00000018409
GeneID:1083984 GeneID:2815024 KEGG:ban:BA_4831 KEGG:bar:GBAA_4831
PATRIC:18787240 BioCyc:BANT261594:GJ7F-4693-MONOMER Uniprot:Q81L03
Length = 877
Score = 130 (50.8 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP + + +++ + A ++ E+ EADD++G LA + +
Sbjct: 65 FRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGTLAKEASEQ 124
Query: 63 GFKIQVVSPNKDS-QILSHS--LCLLR 86
G ++V+S +KD Q++S + +C+ R
Sbjct: 125 GASVKVISGDKDLLQLVSDNTLVCIPR 151
>UNIPROTKB|P38506 [details] [associations]
symbol:ygdG "YgdG" species:83333 "Escherichia coli K-12"
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR002421
InterPro:IPR008918 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF01367 Pfam:PF02739 SMART:SM00279 SMART:SM00475 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0003677 EMBL:U29581 GO:GO:0008152 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 EMBL:M27177 EMBL:L07763
HOGENOM:HOG000040580 KO:K01146 ProtClustDB:PRK09482 HAMAP:MF_01192
InterPro:IPR022895 PIR:B65062 RefSeq:NP_417278.4 RefSeq:YP_491006.1
ProteinModelPortal:P38506 SMR:P38506 DIP:DIP-11145N IntAct:P38506
EnsemblBacteria:EBESCT00000004871 EnsemblBacteria:EBESCT00000018316
GeneID:12930228 GeneID:947256 KEGG:ecj:Y75_p2735 KEGG:eco:b2798
PATRIC:32121012 EchoBASE:EB2275 EcoGene:EG12372
BioCyc:EcoCyc:EG12372-MONOMER BioCyc:ECOL316407:JW5446-MONOMER
Genevestigator:P38506 Uniprot:P38506
Length = 251
Score = 116 (45.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
+RH P YK RPP P+ + + L+A+ + + G EADD+ LAV+
Sbjct: 58 WRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLAATLAVKVTQA 117
Query: 63 GFKIQVVSPNKD-SQILSHSL 82
G + +VS +K Q+LS +L
Sbjct: 118 GHQATIVSTDKGYCQLLSPTL 138
>TIGR_CMR|SO_1549 [details] [associations]
symbol:SO_1549 "exodeoxyribonuclease IX" species:211586
"Shewanella oneidensis MR-1" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006308 "DNA catabolic process" evidence=ISS] [GO:0016895
"exodeoxyribonuclease activity, producing 5'-phosphomonoesters"
evidence=ISS] InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00278 SMART:SM00279 GO:GO:0003677 GO:GO:0006281
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000040580 KO:K01146
ProtClustDB:PRK09482 HAMAP:MF_01192 InterPro:IPR022895
RefSeq:NP_717163.2 HSSP:P19821 ProteinModelPortal:Q8EGP9
GeneID:1169355 KEGG:son:SO_1549 PATRIC:23522738 OMA:YELFRAH
Uniprot:Q8EGP9
Length = 261
Score = 114 (45.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+++R LYP YK R P P+ + GL L+ ++ + I+ I EADDVI LA ++
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAAGLIALQEHLQNLQIQSIYA-AAEADDVIATLATKTA 116
Query: 61 DDGFKIQVVSPNKDSQILSH 80
+ +VS +K L+H
Sbjct: 117 KAQGEALIVSTDKGFSQLNH 136
>TIGR_CMR|SPO_3844 [details] [associations]
symbol:SPO_3844 "DNA polymerase I" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF01612
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279
SMART:SM00474 SMART:SM00475 SMART:SM00482 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HOGENOM:HOG000020999 RefSeq:YP_169032.1
ProteinModelPortal:Q5LLS7 GeneID:3195865 KEGG:sil:SPO3844
PATRIC:23381191 Uniprot:Q5LLS7
Length = 933
Score = 122 (48.0 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ LY YK NR P+ + + +A+ +A +I E+ G EADD+I L+ ++ D
Sbjct: 75 FRNDLYDLYKANREAMPEDLRPQIPLTRAATEAFNIPCKELEGYEADDIIATLSNQARDA 134
Query: 63 GFKIQVVSPNKD 74
G ++ +VS +KD
Sbjct: 135 GGRVTIVSSDKD 146
>UNIPROTKB|Q9KTK4 [details] [associations]
symbol:xni "Protein Xni" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006308 "DNA catabolic process" evidence=ISS]
InterPro:IPR008918 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF01367 Pfam:PF02739 SMART:SM00279 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006308 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 KO:K01146 ProtClustDB:PRK09482
HAMAP:MF_01192 InterPro:IPR022895 PIR:A82268 RefSeq:NP_230545.1
ProteinModelPortal:Q9KTK4 DNASU:2614127 GeneID:2614127
KEGG:vch:VC0898 PATRIC:20080894 OMA:THAIAVF Uniprot:Q9KTK4
Length = 259
Score = 113 (44.8 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
+R L P+YK NR P PD + QG+ ++ + + I + G EADD++ LA +
Sbjct: 63 WRAELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVATLACKVAAH 122
Query: 63 GFKIQVVSPNKD-SQILSHSL 82
K+ ++S +K Q+LS +L
Sbjct: 123 QEKVTIISTDKGYCQLLSPTL 143
>TIGR_CMR|VC_0898 [details] [associations]
symbol:VC_0898 "exodeoxyribonuclease IX" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006308 "DNA catabolic process" evidence=ISS]
InterPro:IPR008918 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF01367 Pfam:PF02739 SMART:SM00279 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006308 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 KO:K01146 ProtClustDB:PRK09482
HAMAP:MF_01192 InterPro:IPR022895 PIR:A82268 RefSeq:NP_230545.1
ProteinModelPortal:Q9KTK4 DNASU:2614127 GeneID:2614127
KEGG:vch:VC0898 PATRIC:20080894 OMA:THAIAVF Uniprot:Q9KTK4
Length = 259
Score = 113 (44.8 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
+R L P+YK NR P PD + QG+ ++ + + I + G EADD++ LA +
Sbjct: 63 WRAELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVATLACKVAAH 122
Query: 63 GFKIQVVSPNKD-SQILSHSL 82
K+ ++S +K Q+LS +L
Sbjct: 123 QEKVTIISTDKGYCQLLSPTL 143
>UNIPROTKB|Q0C2B4 [details] [associations]
symbol:polA "DNA polymerase I" species:228405 "Hyphomonas
neptunium ATCC 15444" [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098
GO:GO:0008408 EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 RefSeq:YP_760129.1 ProteinModelPortal:Q0C2B4
STRING:Q0C2B4 GeneID:4289511 KEGG:hne:HNE_1412 PATRIC:32215643
HOGENOM:HOG000020999 BioCyc:HNEP228405:GI69-1446-MONOMER
Uniprot:Q0C2B4
Length = 929
Score = 120 (47.3 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ +YP YK NR P+ +V ++ + A + IE G EADD+I A +
Sbjct: 77 FRNEIYPLYKANRSDPPEELVPQFPLVRRAAVAFAAHAIEQTGFEADDLIATYARLAEAK 136
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G ++ +VS +KD Q+++ + +L
Sbjct: 137 GARVTIVSSDKDLMQLITDKVLML 160
>UNIPROTKB|Q3ABL3 [details] [associations]
symbol:polA "DNA polymerase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR003583 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278 SMART:SM00279
SMART:SM00475 SMART:SM00482 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 RefSeq:YP_360471.1 ProteinModelPortal:Q3ABL3
STRING:Q3ABL3 GeneID:3728305 KEGG:chy:CHY_1650 PATRIC:21276421
BioCyc:CHYD246194:GJCN-1649-MONOMER Uniprot:Q3ABL3
Length = 831
Score = 117 (46.2 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 26/94 (27%), Positives = 49/94 (52%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR + +YK +R PD +V ++ +K +++ IE+ G EADD+IG L+
Sbjct: 64 FRTEQFTAYKGHRKEAPDELVPQFALVREVLKVLNVPYIELDGYEADDIIGHLSRAFAGQ 123
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRGF-ELV 95
G ++ + + ++D L ++ + +G ELV
Sbjct: 124 GHEVVIYTADRDMLQLVDEKTVVYLTKKGITELV 157
>TIGR_CMR|CHY_1650 [details] [associations]
symbol:CHY_1650 "DNA polymerase I" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002421 InterPro:IPR003583
InterPro:IPR008918 InterPro:IPR012337 InterPro:IPR018320
InterPro:IPR019760 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF02739 PRINTS:PR00868
PROSITE:PS00447 SMART:SM00278 SMART:SM00279 SMART:SM00475
SMART:SM00482 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593 RefSeq:YP_360471.1
ProteinModelPortal:Q3ABL3 STRING:Q3ABL3 GeneID:3728305
KEGG:chy:CHY_1650 PATRIC:21276421
BioCyc:CHYD246194:GJCN-1649-MONOMER Uniprot:Q3ABL3
Length = 831
Score = 117 (46.2 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 26/94 (27%), Positives = 49/94 (52%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR + +YK +R PD +V ++ +K +++ IE+ G EADD+IG L+
Sbjct: 64 FRTEQFTAYKGHRKEAPDELVPQFALVREVLKVLNVPYIELDGYEADDIIGHLSRAFAGQ 123
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRGF-ELV 95
G ++ + + ++D L ++ + +G ELV
Sbjct: 124 GHEVVIYTADRDMLQLVDEKTVVYLTKKGITELV 157
>DICTYBASE|DDB_G0267464 [details] [associations]
symbol:polA "mitochondrial DNA polymerase A"
species:44689 "Dictyostelium discoideum" [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 SMART:SM00279
SMART:SM00475 SMART:SM00482 dictyBase:DDB_G0267464
GenomeReviews:CM000150_GR GO:GO:0003677 GO:GO:0006260
EMBL:AAFI02000003 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
KO:K02335 HSSP:P19821 EMBL:AY170439 RefSeq:XP_647557.1
ProteinModelPortal:Q8I7W9 STRING:Q8I7W9 EnsemblProtists:DDB0191131
GeneID:8616365 KEGG:ddi:DDB_G0267464 OMA:TATKWIQ Uniprot:Q8I7W9
Length = 1369
Score = 118 (46.6 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FR LYP YK+NRPPTP ++Q L + ++++ +V G E DD++ + +
Sbjct: 334 SFRRDLYPEYKSNRPPTPPELLQQLLLIPEVTDSINVAFTKVDGYECDDLLATYSKLATQ 393
Query: 62 DGFK 65
+G K
Sbjct: 394 EGNK 397
>TAIR|locus:2036293 [details] [associations]
symbol:AT1G34380 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003677 GO:GO:0008152
GO:GO:0008409 SUPFAM:SSF47807 UniGene:At.39746 UniGene:At.64018
EMBL:BT015335 EMBL:BT015711 IPI:IPI00519657 RefSeq:NP_001117409.1
ProteinModelPortal:Q66GR7 STRING:Q66GR7 EnsemblPlants:AT1G34380.2
GeneID:840340 KEGG:ath:AT1G34380 TAIR:At1g34380
HOGENOM:HOG000006229 InParanoid:Q66GR7 OMA:CIMGDEV PhylomeDB:Q66GR7
ProtClustDB:CLSN2925451 Genevestigator:Q66GR7 Uniprot:Q66GR7
Length = 347
Score = 107 (42.7 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 4 RHTLYPSYKNNR--PPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
R L PSYK +R P + Q++ ++ ++ V+ + G EADDV+ L ++V
Sbjct: 125 RRELLPSYKAHRKSPNHGRYSKRPHQFVDEVLRKCNVPVVRIEGHEADDVVATLMEQAVQ 184
Query: 62 DGFKIQVVSPNKD-SQILSHSL 82
G++ + SP+KD Q++S ++
Sbjct: 185 RGYRAVIASPDKDFKQLISENV 206
>TIGR_CMR|CJE_0383 [details] [associations]
symbol:CJE_0383 "DNA polymerase type I" species:195099
"Campylobacter jejuni RM1221" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 RefSeq:YP_178402.1 ProteinModelPortal:Q5HWD3
STRING:Q5HWD3 GeneID:3231145 KEGG:cjr:CJE0383 PATRIC:20042470
BioCyc:CJEJ195099:GJC0-388-MONOMER Uniprot:Q5HWD3
Length = 879
Score = 99 (39.9 bits), Expect = 0.00053, P = 0.00053
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR + P+YK NR P P +++ + I+ M + G EADD+I D
Sbjct: 64 FRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISVSQEGYEADDIIASFVKTCEDR 123
Query: 63 GFKIQVVSPNKD 74
+++++ +KD
Sbjct: 124 DIFVRIITQDKD 135
>TIGR_CMR|BA_1606 [details] [associations]
symbol:BA_1606 "5'-3' exonuclease family protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0006308 "DNA
catabolic process" evidence=ISS] [GO:0008409 "5'-3' exonuclease
activity" evidence=ISS] InterPro:IPR002421 InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00279 SMART:SM00475 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0008152 GO:GO:0008409
SUPFAM:SSF47807 HOGENOM:HOG000040581 OMA:WRVDLIP HSSP:P19821
RefSeq:NP_844054.1 RefSeq:YP_018229.1 RefSeq:YP_027758.1
ProteinModelPortal:Q81SP1 DNASU:1086492
EnsemblBacteria:EBBACT00000013235 EnsemblBacteria:EBBACT00000016802
EnsemblBacteria:EBBACT00000019831 GeneID:1086492 GeneID:2819739
GeneID:2852182 KEGG:ban:BA_1606 KEGG:bar:GBAA_1606 KEGG:bat:BAS1489
ProtClustDB:CLSK2485152 BioCyc:BANT260799:GJAJ-1563-MONOMER
BioCyc:BANT261594:GJ7F-1628-MONOMER Uniprot:Q81SP1
Length = 288
Score = 91 (37.1 bits), Expect = 0.00083, P = 0.00083
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR + +YK NR P+ ++ ++ +S+ VI + G EADD IG LA + ++
Sbjct: 68 FRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCIGTLAKQYCNE 127
Query: 63 GFKIQVVSPNKD 74
++ +++ + D
Sbjct: 128 A-EVYILTGDTD 138
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 95 95 0.00091 102 3 11 22 0.36 30
29 0.43 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 504 (54 KB)
Total size of DFA: 95 KB (2069 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.90u 0.18s 10.08t Elapsed: 00:00:01
Total cpu time: 9.91u 0.18s 10.09t Elapsed: 00:00:01
Start: Thu May 9 14:12:33 2013 End: Thu May 9 14:12:34 2013