BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034414
(95 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255579458|ref|XP_002530572.1| DNA polymerase I, putative [Ricinus communis]
gi|223529871|gb|EEF31802.1| DNA polymerase I, putative [Ricinus communis]
Length = 246
Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/96 (84%), Positives = 89/96 (92%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
MNFRHTLYPSYK+NRPPTPDT++QGLQYLKASI+AMSIKVIEVPGVEADDVIG LA RSV
Sbjct: 1 MNFRHTLYPSYKSNRPPTPDTIIQGLQYLKASIRAMSIKVIEVPGVEADDVIGTLATRSV 60
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
D GFK++VVSP+KD QILS SL LLRIAPRGFE+V
Sbjct: 61 DAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFEMV 96
>gi|147858394|emb|CAN81408.1| hypothetical protein VITISV_010447 [Vitis vinifera]
Length = 734
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/95 (84%), Positives = 89/95 (93%), Gaps = 1/95 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+NFRHTLYPSYK+NRPPTPDT+VQGLQYLKASIKAMSIKVIEVPGVEADDVIG L+VRSV
Sbjct: 440 LNFRHTLYPSYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLSVRSV 499
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFEL 94
D G+K++VVSP+KD QILS SL LLRIAPRGFE+
Sbjct: 500 DAGYKVRVVSPDKDFFQILSPSLRLLRIAPRGFEM 534
>gi|359478321|ref|XP_002275974.2| PREDICTED: DNA polymerase I-like [Vitis vinifera]
gi|296084279|emb|CBI24667.3| unnamed protein product [Vitis vinifera]
Length = 441
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/96 (83%), Positives = 89/96 (92%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+NFRHTLYPSYK+NRPPTPDT+VQGLQYLKASIKAMSIKVIEVPGVEADDVIG L+VRSV
Sbjct: 196 LNFRHTLYPSYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLSVRSV 255
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
D G+K++VVSP+KD QILS SL LLRIAPRGFE+
Sbjct: 256 DAGYKVRVVSPDKDFFQILSPSLRLLRIAPRGFEMT 291
>gi|356502746|ref|XP_003520177.1| PREDICTED: DNA polymerase I, thermostable-like [Glycine max]
Length = 444
Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 86/95 (90%), Gaps = 1/95 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH LYP+YK+NRPPTPDT+VQGLQY KASIKAMSIK+IEVPGVEADDVIG LA+RSVD
Sbjct: 200 NFRHNLYPAYKSNRPPTPDTIVQGLQYFKASIKAMSIKIIEVPGVEADDVIGTLALRSVD 259
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
G+K++VVSP+KD QILS SL LLRIAPRG E+V
Sbjct: 260 AGYKVRVVSPDKDFFQILSPSLRLLRIAPRGDEMV 294
>gi|356519672|ref|XP_003528494.1| PREDICTED: DNA polymerase I, thermostable-like [Glycine max]
Length = 436
Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/95 (78%), Positives = 86/95 (90%), Gaps = 1/95 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH LYP+YK+NRPPTPDT+VQGLQY KASIKAMSIK+IEVPGVEADDVIG LA+RSVD
Sbjct: 192 NFRHNLYPAYKSNRPPTPDTIVQGLQYFKASIKAMSIKIIEVPGVEADDVIGTLALRSVD 251
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
G+K++VVSP+KD QILS SL LLRIAPRG ++V
Sbjct: 252 AGYKVRVVSPDKDFFQILSPSLRLLRIAPRGDQMV 286
>gi|224121808|ref|XP_002330658.1| predicted protein [Populus trichocarpa]
gi|222872262|gb|EEF09393.1| predicted protein [Populus trichocarpa]
Length = 310
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/96 (78%), Positives = 85/96 (88%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+NFRHTLY YK+NRPPTPDT++QGL YLKA+IKAMS+KVIEVPGVEADDVIG LAV SV
Sbjct: 65 LNFRHTLYSLYKSNRPPTPDTVIQGLPYLKAAIKAMSVKVIEVPGVEADDVIGTLAVNSV 124
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
DGFK++VVSP+KD QILS SL LLRIAPRG E+V
Sbjct: 125 KDGFKVRVVSPDKDFFQILSPSLRLLRIAPRGLEMV 160
>gi|24421685|gb|AAN60992.1| Unknown protein [Oryza sativa Japonica Group]
Length = 443
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/96 (77%), Positives = 83/96 (86%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
M FRH LYPSYK+NR PTPDT+VQG+QYLKASIKAMSIKVIEVPGVEADDVIG LAV SV
Sbjct: 199 MTFRHMLYPSYKSNRIPTPDTIVQGMQYLKASIKAMSIKVIEVPGVEADDVIGTLAVSSV 258
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
G+K+++VSP+KD QILS SL LLRIAPRG +V
Sbjct: 259 SAGYKVRIVSPDKDFFQILSPSLRLLRIAPRGSGMV 294
>gi|108706960|gb|ABF94755.1| 5'-3' exonuclease, N-terminal resolvase-like domain containing
protein, expressed [Oryza sativa Japonica Group]
Length = 416
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/96 (77%), Positives = 83/96 (86%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
M FRH LYPSYK+NR PTPDT+VQG+QYLKASIKAMSIKVIEVPGVEADDVIG LAV SV
Sbjct: 172 MTFRHMLYPSYKSNRIPTPDTIVQGMQYLKASIKAMSIKVIEVPGVEADDVIGTLAVSSV 231
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
G+K+++VSP+KD QILS SL LLRIAPRG +V
Sbjct: 232 SAGYKVRIVSPDKDFFQILSPSLRLLRIAPRGSGMV 267
>gi|115451687|ref|NP_001049444.1| Os03g0227300 [Oryza sativa Japonica Group]
gi|108706959|gb|ABF94754.1| 5'-3' exonuclease, N-terminal resolvase-like domain containing
protein, expressed [Oryza sativa Japonica Group]
gi|113547915|dbj|BAF11358.1| Os03g0227300 [Oryza sativa Japonica Group]
gi|215704203|dbj|BAG93043.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624502|gb|EEE58634.1| hypothetical protein OsJ_10000 [Oryza sativa Japonica Group]
Length = 421
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/96 (77%), Positives = 83/96 (86%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
M FRH LYPSYK+NR PTPDT+VQG+QYLKASIKAMSIKVIEVPGVEADDVIG LAV SV
Sbjct: 177 MTFRHMLYPSYKSNRIPTPDTIVQGMQYLKASIKAMSIKVIEVPGVEADDVIGTLAVSSV 236
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
G+K+++VSP+KD QILS SL LLRIAPRG +V
Sbjct: 237 SAGYKVRIVSPDKDFFQILSPSLRLLRIAPRGSGMV 272
>gi|218192373|gb|EEC74800.1| hypothetical protein OsI_10602 [Oryza sativa Indica Group]
Length = 421
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/96 (77%), Positives = 83/96 (86%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
M FRH LYPSYK+NR PTPDT+VQG+QYLKASIKAMSIKVIEVPGVEADDVIG LAV SV
Sbjct: 177 MTFRHMLYPSYKSNRIPTPDTIVQGMQYLKASIKAMSIKVIEVPGVEADDVIGTLAVSSV 236
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
G+K+++VSP+KD QILS SL LLRIAPRG +V
Sbjct: 237 SAGYKVRIVSPDKDFFQILSPSLRLLRIAPRGSGMV 272
>gi|242036411|ref|XP_002465600.1| hypothetical protein SORBIDRAFT_01g041870 [Sorghum bicolor]
gi|241919454|gb|EER92598.1| hypothetical protein SORBIDRAFT_01g041870 [Sorghum bicolor]
Length = 421
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/96 (76%), Positives = 83/96 (86%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
M FRH LYP+YK+NR PTPDT+VQG+QYLKASIKAMSIKVIEVPGVEADDVIG LAV SV
Sbjct: 178 MTFRHMLYPAYKSNRTPTPDTVVQGMQYLKASIKAMSIKVIEVPGVEADDVIGTLAVNSV 237
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
G+K+++VSP+KD QILS SL LLRIAPRG +V
Sbjct: 238 SAGYKVRIVSPDKDFFQILSPSLRLLRIAPRGSGMV 273
>gi|226530274|ref|NP_001151880.1| DNA polymerase I [Zea mays]
gi|195650551|gb|ACG44743.1| DNA polymerase I [Zea mays]
Length = 422
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/96 (75%), Positives = 83/96 (86%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
M FRH LYP+YK+NR PTPDT+VQG+QYLKASIKAMSIKVIEVPGVEADDVIG LA+ SV
Sbjct: 178 MTFRHMLYPAYKSNRTPTPDTVVQGMQYLKASIKAMSIKVIEVPGVEADDVIGTLAINSV 237
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
G+K+++VSP+KD QILS SL LLRIAPRG +V
Sbjct: 238 SAGYKVRIVSPDKDFFQILSPSLRLLRIAPRGSGMV 273
>gi|194696700|gb|ACF82434.1| unknown [Zea mays]
gi|195654367|gb|ACG46651.1| DNA polymerase I [Zea mays]
gi|413956435|gb|AFW89084.1| DNA polymerase I [Zea mays]
Length = 422
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/96 (75%), Positives = 83/96 (86%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
M FRH LYP+YK+NR PTPDT+VQG+QYLKASIKAMSIKVIEVPGVEADDVIG LA+ SV
Sbjct: 178 MTFRHMLYPAYKSNRTPTPDTVVQGMQYLKASIKAMSIKVIEVPGVEADDVIGTLAINSV 237
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
G+K+++VSP+KD QILS SL LLRIAPRG +V
Sbjct: 238 SAGYKVRIVSPDKDFFQILSPSLRLLRIAPRGSGMV 273
>gi|449453197|ref|XP_004144345.1| PREDICTED: DNA polymerase I-like [Cucumis sativus]
Length = 461
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/95 (76%), Positives = 83/95 (87%), Gaps = 1/95 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRHT+YP+YK+NR PTPDT+VQGLQYLKASIK+MSIKVIEVPGVEADDVIG LA+RSV
Sbjct: 217 TFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVA 276
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
G K++VVSP+KD QILS SL LLRIA RG E+V
Sbjct: 277 VGCKVRVVSPDKDFFQILSPSLRLLRIASRGIEMV 311
>gi|449516928|ref|XP_004165498.1| PREDICTED: DNA polymerase I, thermostable-like [Cucumis sativus]
Length = 283
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/94 (77%), Positives = 83/94 (88%), Gaps = 1/94 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRHT+YP+YK+NR PTPDT+VQGLQYLKASIK+MSIKVIEVPGVEADDVIG LA+RSV
Sbjct: 23 FRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAV 82
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
G K++VVSP+KD QILS SL LLRIA RG E+V
Sbjct: 83 GCKVRVVSPDKDFFQILSPSLRLLRIASRGIEMV 116
>gi|42565846|ref|NP_190773.2| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|145362483|ref|NP_974414.2| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|109946597|gb|ABG48477.1| At3g52050 [Arabidopsis thaliana]
gi|332645358|gb|AEE78879.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|332645359|gb|AEE78880.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 425
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/96 (79%), Positives = 86/96 (89%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
MNFRHTLYP+YK+NRPPTPDT+VQGLQYLKASIKAMSIKVIEVPGVEADDVIG LA+RS+
Sbjct: 179 MNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLAMRSI 238
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
GFK++VVSP+KD QILS SL LLR+ PRG E+
Sbjct: 239 SAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMA 274
>gi|297816476|ref|XP_002876121.1| hypothetical protein ARALYDRAFT_485561 [Arabidopsis lyrata subsp.
lyrata]
gi|297321959|gb|EFH52380.1| hypothetical protein ARALYDRAFT_485561 [Arabidopsis lyrata subsp.
lyrata]
Length = 454
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/96 (79%), Positives = 86/96 (89%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
MNFRHTLYP+YK+NRPPTPDT+VQGLQYLKASIKAMSIKVIEVPGVEADDVIG LA+RS+
Sbjct: 208 MNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLAMRSI 267
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
GFK++VVSP+KD QILS SL LLR+ PRG E+
Sbjct: 268 SAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMA 303
>gi|145332811|ref|NP_001078271.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|332645361|gb|AEE78882.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 413
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/96 (79%), Positives = 86/96 (89%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
MNFRHTLYP+YK+NRPPTPDT+VQGLQYLKASIKAMSIKVIEVPGVEADDVIG LA+RS+
Sbjct: 167 MNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLAMRSI 226
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
GFK++VVSP+KD QILS SL LLR+ PRG E+
Sbjct: 227 SAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMA 262
>gi|238480047|ref|NP_001154673.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|332645362|gb|AEE78883.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 365
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 86/95 (90%), Gaps = 1/95 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
MNFRHTLYP+YK+NRPPTPDT+VQGLQYLKASIKAMSIKVIEVPGVEADDVIG LA+RS+
Sbjct: 184 MNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLAMRSI 243
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFEL 94
GFK++VVSP+KD QILS SL LLR+ PRG E+
Sbjct: 244 SAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEM 278
>gi|145332809|ref|NP_001078270.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|332645360|gb|AEE78881.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 448
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/96 (79%), Positives = 86/96 (89%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
MNFRHTLYP+YK+NRPPTPDT+VQGLQYLKASIKAMSIKVIEVPGVEADDVIG LA+RS+
Sbjct: 202 MNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLAMRSI 261
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
GFK++VVSP+KD QILS SL LLR+ PRG E+
Sbjct: 262 SAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMA 297
>gi|110741816|dbj|BAE98851.1| hypothetical protein [Arabidopsis thaliana]
Length = 131
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/96 (79%), Positives = 86/96 (89%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
MNFRHTLYP+YK+NRPPTPDT+VQGLQYLKASIKAMSIKVIEVPGVEADDVIG LA+RS+
Sbjct: 1 MNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLAMRSI 60
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
GFK++VVSP+KD QILS SL LLR+ PRG E+
Sbjct: 61 SAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMA 96
>gi|357113266|ref|XP_003558425.1| PREDICTED: DNA polymerase I-like [Brachypodium distachyon]
Length = 419
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/96 (73%), Positives = 81/96 (84%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
M FRH LYP+YK+NR TPDT+VQG+QYLKASIKAMSIKVIEVPGVEADD IG LAV SV
Sbjct: 175 MTFRHMLYPAYKSNRTSTPDTIVQGMQYLKASIKAMSIKVIEVPGVEADDAIGTLAVNSV 234
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
G+K++VVSP+KD QILS SL LLRI+PRG +V
Sbjct: 235 SAGYKVRVVSPDKDFFQILSPSLRLLRISPRGSGMV 270
>gi|357475547|ref|XP_003608059.1| DNA polymerase I [Medicago truncatula]
gi|355509114|gb|AES90256.1| DNA polymerase I [Medicago truncatula]
Length = 491
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/95 (78%), Positives = 87/95 (91%), Gaps = 1/95 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH LYP+YK+NRPPTPDT+VQGLQYLKASIKAM+IKVIEVPGVEADDVIG LA+RSVD
Sbjct: 224 NFRHNLYPAYKSNRPPTPDTIVQGLQYLKASIKAMAIKVIEVPGVEADDVIGTLALRSVD 283
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
G+K++VVSP+KD QILS SL LLR+APRG ++V
Sbjct: 284 AGYKVRVVSPDKDFFQILSPSLRLLRLAPRGDQMV 318
>gi|148906869|gb|ABR16580.1| unknown [Picea sitchensis]
Length = 400
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 73/90 (81%), Gaps = 4/90 (4%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRHTLYP+YK+NR PTPDT+VQ LQYLKA+++AMS+K VPGVEADDVIG LAV V
Sbjct: 200 FRHTLYPAYKSNRMPTPDTIVQALQYLKAALQAMSVK---VPGVEADDVIGTLAVNGVAA 256
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
G K++VVSP+KD QIL SL LLRI+ RG
Sbjct: 257 GLKVRVVSPDKDFFQILCPSLRLLRISSRG 286
>gi|302802031|ref|XP_002982771.1| hypothetical protein SELMODRAFT_54861 [Selaginella moellendorffii]
gi|300149361|gb|EFJ16016.1| hypothetical protein SELMODRAFT_54861 [Selaginella moellendorffii]
Length = 363
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FRHT++P YK NRPPTPDT+ QGL +L+ ++ AM IKVIEVPGVEADDVI LAV +
Sbjct: 98 LTFRHTMFPEYKKNRPPTPDTIYQGLDHLRPALVAMGIKVIEVPGVEADDVIATLAVSAA 157
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
K+++VSP+KD QILS + LLR P+G +V
Sbjct: 158 TSEMKVRIVSPDKDFFQILSPDIRLLRFVPKGAGMV 193
>gi|302818496|ref|XP_002990921.1| hypothetical protein SELMODRAFT_44782 [Selaginella moellendorffii]
gi|300141252|gb|EFJ07965.1| hypothetical protein SELMODRAFT_44782 [Selaginella moellendorffii]
Length = 363
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FRHT++P YK NRPPTPDT+ QGL +L+ ++ AM IKVIEVPGVEADDVI LAV +
Sbjct: 98 LTFRHTMFPEYKKNRPPTPDTIYQGLDHLRPALVAMGIKVIEVPGVEADDVIATLAVSAA 157
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
K+++VSP+KD QILS + LLR P+G +V
Sbjct: 158 TSEMKVRIVSPDKDFFQILSPDIRLLRFVPKGAGMV 193
>gi|168027127|ref|XP_001766082.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682725|gb|EDQ69141.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 310
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FRH LYP+YK+ R PTPDT+ Q L LK ++ ++ I V+EV GVEADD I AVR+V
Sbjct: 66 LTFRHELYPAYKSGRAPTPDTVCQALSCLKPALLSLGISVVEVAGVEADDAIAAFAVRAV 125
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
D G + + SP+KD QI+S L LLR PRG +V
Sbjct: 126 DAGMHVSIASPDKDFFQIISPRLRLLRFVPRGSGIV 161
>gi|4678934|emb|CAB41325.1| putative protein [Arabidopsis thaliana]
Length = 384
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 66/96 (68%), Gaps = 24/96 (25%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
MNFRHTLYP+YK+NRPPTPDT+VQGLQYLKASIKAMSIKVIEV
Sbjct: 193 MNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEV----------------- 235
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
+VVSP+KD QILS SL LLR+ PRG + V
Sbjct: 236 ------RVVSPDKDFFQILSPSLRLLRLTPRGSDCV 265
>gi|412993369|emb|CCO16902.1| DNA polymerase I [Bathycoccus prasinos]
Length = 403
Score = 85.1 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV-D 61
FRH ++ YK NRPPTP+ ++ + + ++AM+I+ ++V GVEADD+IG LA RSV +
Sbjct: 159 FRHEMFVDYKANRPPTPEALIALIPKVSELVEAMAIETVKVSGVEADDIIGTLATRSVTE 218
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLR 86
GFK+ + SP+KD Q+L+ ++ +LR
Sbjct: 219 KGFKVSIASPDKDFCQLLNENVRMLR 244
>gi|354603286|ref|ZP_09021285.1| hypothetical protein HMPREF9450_00200 [Alistipes indistinctus YIT
12060]
gi|353349163|gb|EHB93429.1| hypothetical protein HMPREF9450_00200 [Alistipes indistinctus YIT
12060]
Length = 1094
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 54/73 (73%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NR TP+ ++ + Y+K ++AM I VIEVPG EADDVIG L++++
Sbjct: 111 NFRHEIYPQYKANREATPEDIIAAVPYIKRVLEAMRIPVIEVPGYEADDVIGTLSMKAAG 170
Query: 62 DGFKIQVVSPNKD 74
G+++ +V+P+KD
Sbjct: 171 AGYEVYMVTPDKD 183
>gi|384253483|gb|EIE26958.1| hypothetical protein COCSUDRAFT_27331 [Coccomyxa subellipsoidea
C-169]
Length = 426
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH LY YK RPP PD M + ++A ++ + I V+ V GVEADDVIG +A R+++
Sbjct: 192 TFRHELYSDYKAQRPPMPDAMKLAIPKIQALLEILGIPVLRVAGVEADDVIGTVATRAIE 251
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLR 86
DGF + + SP+KD Q+L L LLR
Sbjct: 252 DGFLVAIASPDKDFFQLLRPGLQLLR 277
>gi|345303265|ref|YP_004825167.1| DNA polymerase I [Rhodothermus marinus SG0.5JP17-172]
gi|345112498|gb|AEN73330.1| DNA polymerase I [Rhodothermus marinus SG0.5JP17-172]
Length = 945
Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 62/96 (64%), Gaps = 3/96 (3%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK +R P P+ ++ L ++K ++A+ I VIE PGVEADDVIG LA R+
Sbjct: 89 FREELYEEYKAHREPPPEDLLANLPWIKEIVRALDIPVIEEPGVEADDVIGTLARRAEAH 148
Query: 63 GFKIQVVSPNKDS-QILSHSLCLLRIAPRG--FELV 95
G + +VSP+KD Q+LS + + + A RG F+L+
Sbjct: 149 GIDVVIVSPDKDFLQLLSPHISIYKPARRGETFDLI 184
>gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
Length = 924
Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 62/96 (64%), Gaps = 3/96 (3%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK +R P P+ ++ L ++K ++A+ I VIE PGVEADDVIG LA R+
Sbjct: 68 FREAIYEEYKAHREPPPEDLLANLPWIKEIVRALDIPVIEEPGVEADDVIGTLARRAEAH 127
Query: 63 GFKIQVVSPNKDS-QILSHSLCLLRIAPRG--FELV 95
G + +VSP+KD Q+LS + + + A RG F+L+
Sbjct: 128 GIDVVIVSPDKDFLQLLSPRISIYKPARRGETFDLI 163
>gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518']
Length = 924
Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 62/96 (64%), Gaps = 3/96 (3%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK +R P P+ ++ L ++K ++A+ I VIE PGVEADDVIG LA R+
Sbjct: 68 FREAIYEEYKAHREPPPEDLLANLPWIKEIVRALDIPVIEEPGVEADDVIGTLARRAEAH 127
Query: 63 GFKIQVVSPNKDS-QILSHSLCLLRIAPRG--FELV 95
G + +VSP+KD Q+LS + + + A RG F+L+
Sbjct: 128 GIDVVIVSPDKDFLQLLSPRISIYKPARRGETFDLI 163
>gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus]
Length = 924
Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 62/96 (64%), Gaps = 3/96 (3%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK +R P P+ ++ L ++K ++A+ I VIE PGVEADDVIG LA R+
Sbjct: 68 FREAIYEEYKAHREPPPEDLLANLPWIKEIVRALDIPVIEEPGVEADDVIGTLARRAEAH 127
Query: 63 GFKIQVVSPNKDS-QILSHSLCLLRIAPRG--FELV 95
G + +VSP+KD Q+LS + + + A RG F+L+
Sbjct: 128 GIDVVIVSPDKDFLQLLSPHVSIYKPARRGETFDLI 163
>gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87]
gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87]
Length = 941
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 63/89 (70%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R L+ YK NR TP+ ++QG+ Y+++ +KAM I V+E+PG EADD+IG LA ++ +
Sbjct: 70 RTELFSDYKANRDATPEPIMQGIPYIQSILKAMHIPVVELPGCEADDIIGTLAKQAEKEN 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+++ +V+P+KD +Q++S ++ + R A G
Sbjct: 130 YQVYMVTPDKDFAQLVSENIFMYRPARMG 158
>gi|307105571|gb|EFN53820.1| hypothetical protein CHLNCDRAFT_136540 [Chlorella variabilis]
Length = 293
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y YK R PD + + + L +KAM+I VI+V GVEADDVIG +A R+V
Sbjct: 47 TFRHEMYEGYKGQRQACPDAVKEAIPRLLQLLKAMAIPVIQVSGVEADDVIGTMAYRAVR 106
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLR 86
+G + V SP+KD Q+L + LLR
Sbjct: 107 EGIAVAVASPDKDFFQLLRPGIILLR 132
>gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
gi|167658438|gb|EDS02568.1| DNA-directed DNA polymerase [Alistipes putredinis DSM 17216]
Length = 959
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 52/73 (71%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FR ++P YK NR TP+ ++ + Y+K ++AM I V+EVPG EADDVIG LA + V+
Sbjct: 65 SFRREIFPEYKANRAETPEDILLSVPYVKRIVEAMCIPVLEVPGYEADDVIGTLAHKGVE 124
Query: 62 DGFKIQVVSPNKD 74
G+ + +V+P+KD
Sbjct: 125 AGYDVFMVTPDKD 137
>gi|374386528|ref|ZP_09644028.1| DNA polymerase I [Odoribacter laneus YIT 12061]
gi|373224457|gb|EHP46797.1| DNA polymerase I [Odoribacter laneus YIT 12061]
Length = 895
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y YK RP P+ + + + Y+K IK + IK IE+PG EADDVIG +A ++
Sbjct: 68 TFRHEMYAPYKAQRPKMPEDLRKSIPYIKDIIKGLGIKCIEIPGFEADDVIGTIARKAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLR 86
G+ + +++P+KD +Q++S + + +
Sbjct: 128 SGYTVYMITPDKDYAQLVSEKIFMYK 153
>gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855]
gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855]
Length = 926
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK NR P P+ +++ + Y+K ++ + I V+EVPGVEADDVIG LA ++ D
Sbjct: 76 FRKEMYDDYKANRDPPPEELLENIPYIKEIVEGLDIPVLEVPGVEADDVIGALAKQAEAD 135
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIA 88
+ +VSP+KD Q+LS + + + A
Sbjct: 136 DADVVIVSPDKDFKQLLSDKVSIYKPA 162
>gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8]
gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8]
Length = 949
Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK NR P P+ +++ + Y+K ++ + I V+EVPGVEADDVIG LA ++ D
Sbjct: 99 FRKEMYDDYKANRDPPPEELLENIPYIKEIVEGLDIPVLEVPGVEADDVIGALAKQAEAD 158
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIA 88
+ +VSP+KD Q+LS + + + A
Sbjct: 159 DADVVIVSPDKDFKQLLSDKVSIYKPA 185
>gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
Length = 948
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 52/73 (71%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH YP YK NRP TP+T+ + Y+K ++A I ++ V G EADD+IG L+ ++V+
Sbjct: 65 TFRHKEYPEYKANRPETPETIRFSMPYIKELVQAYQIPLLGVEGYEADDLIGTLSRQAVE 124
Query: 62 DGFKIQVVSPNKD 74
G+++++V+P+KD
Sbjct: 125 AGYEVRMVTPDKD 137
>gi|332300236|ref|YP_004442157.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
Length = 948
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 52/73 (71%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH YP YK NRP TP+T+ + Y+K ++A I ++ V G EADD+IG L+ ++V+
Sbjct: 65 TFRHKEYPEYKANRPETPETIRFSMPYIKELVQAYQIPLLGVEGYEADDLIGTLSRQAVE 124
Query: 62 DGFKIQVVSPNKD 74
G+++++V+P+KD
Sbjct: 125 AGYEVRMVTPDKD 137
>gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
PR426713P-I]
gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
PR426713P-I]
Length = 948
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 52/73 (71%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH YP YK NRP TP+T+ + Y+K ++A I ++ V G EADD+IG L+ ++V+
Sbjct: 65 TFRHKEYPEYKANRPETPETIRFSMPYIKELVQAYQIPLLGVEGYEADDLIGTLSRQAVE 124
Query: 62 DGFKIQVVSPNKD 74
G+++++V+P+KD
Sbjct: 125 AGYEVRMVTPDKD 137
>gi|319789775|ref|YP_004151408.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
gi|317114277|gb|ADU96767.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
Length = 829
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR + YK NR PTPD L Y+K +K + +KV+E+PG EADD+IG L R +
Sbjct: 64 FRSEISKDYKANRKPTPDDFKVQLPYIKEFLKCLGVKVLELPGYEADDIIGTLVKRLQEK 123
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRGFE 93
GF++ +V+ +KD Q+LS + +L + P+G E
Sbjct: 124 GFEVVIVTSDKDMKQLLSPRVSIL-VPPKGKE 154
>gi|357060797|ref|ZP_09121561.1| hypothetical protein HMPREF9332_01118 [Alloprevotella rava F0323]
gi|355375630|gb|EHG22913.1| hypothetical protein HMPREF9332_01118 [Alloprevotella rava F0323]
Length = 921
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L+P YK R TP+ + + +K IKA I ++EVPG EADDVIG +A +V
Sbjct: 65 TFRHELFPEYKAQREATPEDIKMAVPIIKELIKAYRIPILEVPGFEADDVIGTMAKAAVR 124
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLR 86
G+++++++P+KD +Q++ +L + R
Sbjct: 125 KGYEVRMITPDKDYAQLVEPNLLMQR 150
>gi|392410913|ref|YP_006447520.1| DNA polymerase I [Desulfomonile tiedjei DSM 6799]
gi|390624049|gb|AFM25256.1| DNA polymerase I [Desulfomonile tiedjei DSM 6799]
Length = 888
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFR+ +YP+YK NRPPTPD + + + ++A I I VPG EADD+I L+ + D
Sbjct: 67 NFRYEIYPAYKANRPPTPDDLQIQIPRIHEIVEAYRIPSISVPGFEADDIIAALSRLAAD 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
G+K+ +VS +KD +Q++S + +
Sbjct: 127 KGWKVTIVSGDKDLTQLVSDGISM 150
>gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
Length = 881
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH LYP+YK +RPP PD + ++ L I+A+ +I PGVEADDVIG LA++++ +
Sbjct: 25 FRHDLYPAYKAHRPPMPDDLRVQIEPLHRLIEALGFPLIIEPGVEADDVIGTLAMQALSE 84
Query: 63 GFKIQVVSPNKD-SQILSHS 81
+++ + S +KD +Q+L+H+
Sbjct: 85 HYQVVISSGDKDMAQLLTHA 104
>gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1]
gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
exonuclease [Acinetobacter sp. ADP1]
Length = 920
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP PD + Q + YL A IKA+ I + +PG EADDVIG LA R+ +
Sbjct: 64 FRHELSPIYKGDRPSMPDELAQQIPYLHALIKALGIPLYMLPGAEADDVIGTLAKRAEKE 123
Query: 63 GFKIQVVSPNKD-SQILSHSLCL 84
G ++ + + +KD +Q+++ + L
Sbjct: 124 GHQVLISTGDKDMAQLVTEKVTL 146
>gi|373487712|ref|ZP_09578379.1| DNA polymerase I [Holophaga foetida DSM 6591]
gi|372008787|gb|EHP09412.1| DNA polymerase I [Holophaga foetida DSM 6591]
Length = 933
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 48/72 (66%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +YP YK NRP P+ + + ++ I+A++I ++E+PG EADDV+G LA +S
Sbjct: 60 FRHEIYPDYKANRPDMPEDLRPQIPLIRELIQALNIPIVELPGFEADDVMGTLAAQSAAA 119
Query: 63 GFKIQVVSPNKD 74
G +VSP+KD
Sbjct: 120 GLPAVIVSPDKD 131
>gi|308805154|ref|XP_003079889.1| DNA polymerase type I (ISS) [Ostreococcus tauri]
gi|116058346|emb|CAL53535.1| DNA polymerase type I (ISS) [Ostreococcus tauri]
Length = 322
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH ++ YK NRPPTP+ +++ + ++ ++ M + V+ + GVEADD+IG ++ R+ D
Sbjct: 81 TFRHEMFVDYKANRPPTPEPLLEVIPKVEQLVRDMGVPVLRLSGVEADDIIGTVSRRASD 140
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLR 86
GF++ + SP+KD Q+L +L+
Sbjct: 141 AGFRVSICSPDKDFYQLLGPRTSMLK 166
>gi|373111034|ref|ZP_09525294.1| DNA polymerase I [Myroides odoratimimus CCUG 10230]
gi|371641095|gb|EHO06682.1| DNA polymerase I [Myroides odoratimimus CCUG 10230]
Length = 939
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+ R L+P YK NR TP+ + + Y+K ++AM I ++EV G EADD+IG L+ ++
Sbjct: 68 DLRLELFPEYKANRDETPEAIKIAVPYIKQILEAMHIPIVEVSGYEADDLIGTLSKQAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+GF++ +V+P+KD +Q++S ++ + R A G
Sbjct: 128 EGFEVYMVTPDKDYAQLVSENIFMYRPARMG 158
>gi|423132365|ref|ZP_17120015.1| DNA polymerase I [Myroides odoratimimus CCUG 12901]
gi|371639436|gb|EHO05052.1| DNA polymerase I [Myroides odoratimimus CCUG 12901]
Length = 939
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+ R L+P YK NR TP+ + + Y+K ++AM I ++EV G EADD+IG L+ ++
Sbjct: 68 DLRLELFPEYKANRDETPEAIKIAIPYIKQILEAMHIPIVEVSGYEADDLIGTLSKQAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+GF++ +V+P+KD +Q++S ++ + R A G
Sbjct: 128 EGFEVYMVTPDKDYAQLVSENIFMYRPARMG 158
>gi|404404930|ref|ZP_10996514.1| DNA polymerase I [Alistipes sp. JC136]
Length = 958
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 53/82 (64%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FR ++P YK NR TP+ ++ + Y+K ++AM I ++EV G EADDVIG L+ + V+
Sbjct: 65 SFRRDIFPEYKANRAETPEDILLSVPYVKRVLEAMCIPILEVAGYEADDVIGTLSQKGVE 124
Query: 62 DGFKIQVVSPNKDSQILSHSLC 83
G+ + +V+P+KD L C
Sbjct: 125 AGYDVYMVTPDKDYGQLVRDNC 146
>gi|423135955|ref|ZP_17123600.1| DNA polymerase I [Myroides odoratimimus CIP 101113]
gi|371639690|gb|EHO05305.1| DNA polymerase I [Myroides odoratimimus CIP 101113]
Length = 939
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+ R L+P YK NR TP+ + + Y+K ++AM I ++EV G EADD+IG L+ ++
Sbjct: 68 DLRLELFPEYKANRDETPEAIKIAVPYIKQILEAMHIPIVEVSGYEADDLIGTLSKQAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+GF++ +V+P+KD +Q++S ++ + R A G
Sbjct: 128 EGFEVYMVTPDKDYAQLVSENIFMYRPARMG 158
>gi|409124233|ref|ZP_11223628.1| DNA polymerase I [Gillisia sp. CBA3202]
Length = 917
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R LY YK NR TP+ + + Y+K + AM I V+E+PG EADDVIG LA ++ +G
Sbjct: 70 RTELYADYKANRDATPEPISIAIPYIKDILHAMHIPVVELPGCEADDVIGTLAKQAEKEG 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+K +V+P+KD +Q++S ++ + R A G
Sbjct: 130 YKTFMVTPDKDFAQLVSENIFMYRPARMG 158
>gi|334366159|ref|ZP_08515100.1| DNA-directed DNA polymerase [Alistipes sp. HGB5]
gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5]
Length = 958
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FR ++P YK NR TP+ ++ + Y+K ++AM I ++EV G EADDVIG L+ + V+
Sbjct: 65 SFRREVFPEYKANRAETPEDILLSVPYVKRVLEAMCIPILEVEGYEADDVIGTLSQKGVE 124
Query: 62 DGFKIQVVSPNKDSQILSHSLC 83
G+++ +V+P+KD L C
Sbjct: 125 AGYEVFMVTPDKDYGQLVRDNC 146
>gi|390946767|ref|YP_006410527.1| DNA polymerase I [Alistipes finegoldii DSM 17242]
gi|390423336|gb|AFL77842.1| DNA polymerase I [Alistipes finegoldii DSM 17242]
Length = 956
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FR ++P YK NR TP+ ++ + Y+K ++AM I ++EV G EADDVIG L+ + V+
Sbjct: 65 SFRREVFPEYKANRAETPEDILLSVPYVKRVLEAMCIPILEVEGYEADDVIGTLSQKGVE 124
Query: 62 DGFKIQVVSPNKDSQILSHSLC 83
G+++ +V+P+KD L C
Sbjct: 125 AGYEVFMVTPDKDYGQLVRDNC 146
>gi|346224772|ref|ZP_08845914.1| DNA polymerase I [Anaerophaga thermohalophila DSM 12881]
Length = 921
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ LY +YK NR TP+ + + + Y+K ++A +I +I+V G EADDV+G L+ ++ +
Sbjct: 70 FRNELYEAYKANREATPEDIKKAVPYIKKILEAFNINIIQVDGYEADDVVGTLSRKAAAE 129
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRGFEL 94
GFK +V+P+KD +Q+++ + + G E+
Sbjct: 130 GFKTFMVTPDKDYAQLVTEHTLMYKPKSAGNEI 162
>gi|325281339|ref|YP_004253881.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712]
gi|324313148|gb|ADY33701.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712]
Length = 896
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +Y YK RPP P+ + + + Y+K I + I ++ PG EADD IG LA R+ +
Sbjct: 69 FRHEMYTPYKAQRPPMPEDLRKSIPYIKKIIAGLGISCLDAPGYEADDFIGTLAKRAEKE 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
G+ + +++P+KD +Q++S + + + G
Sbjct: 129 GYTVYMITPDKDYAQLVSEKVFMYKPGRSG 158
>gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301]
Length = 958
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FR ++P YK NR TP+ ++ + Y+K + AM I ++EV G EADDVIG L+ + V+
Sbjct: 65 SFRRDIFPEYKANRSETPEDILLSIPYVKRVLDAMCIPILEVAGYEADDVIGTLSQKGVE 124
Query: 62 DGFKIQVVSPNKDSQILSHSLC 83
G+ + +V+P+KD L C
Sbjct: 125 AGYDVYMVTPDKDYGQLVRDNC 146
>gi|423329673|ref|ZP_17307479.1| DNA polymerase I [Myroides odoratimimus CCUG 3837]
gi|404603301|gb|EKB02976.1| DNA polymerase I [Myroides odoratimimus CCUG 3837]
Length = 939
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+ R L+P YK NR TP+ + + Y+K ++AM I ++EV G EADD+IG L+ ++
Sbjct: 68 DLRLELFPEYKANRDETPEAIKIAVPYIKQILEAMHIPIVEVNGYEADDLIGTLSKQAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+GF++ +V+P+KD +Q++S ++ + R A G
Sbjct: 128 EGFEVYMVTPDKDYAQLVSENIFMYRPARMG 158
>gi|431931900|ref|YP_007244946.1| DNA polymerase I [Thioflavicoccus mobilis 8321]
gi|431830203|gb|AGA91316.1| DNA polymerase I [Thioflavicoccus mobilis 8321]
Length = 894
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP YK NRPP PD + + ++ L I+AM + ++ VP VEADDVIG LA+R+ +
Sbjct: 67 FRDDLYPKYKANRPPLPDDLREQIEPLLTVIRAMGLPLVVVPDVEADDVIGTLAMRAAEA 126
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G V + +KD +Q++ + L+
Sbjct: 127 GLDTLVSTGDKDLAQLVDERITLV 150
>gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
Length = 893
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 47/76 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH LY YK NRPP P M L +++ +K + I ++E G EADD+IG LA ++
Sbjct: 68 FRHDLYEEYKANRPPMPHDMAAQLPFIRKVVKNLGIAMLEKSGYEADDIIGTLARAGEEE 127
Query: 63 GFKIQVVSPNKDSQIL 78
GF + VVS +KD + L
Sbjct: 128 GFNVVVVSGDKDFRQL 143
>gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
Length = 927
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L IKAM + +I VPGVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIKAMGLPLICVPGVEADDVIGTLATQASA 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G + + + +KD +Q++ ++ L+
Sbjct: 128 EGIPVLISTGDKDMAQLVDENITLI 152
>gi|297566628|ref|YP_003685600.1| DNA polymerase I [Meiothermus silvanus DSM 9946]
gi|296851077|gb|ADH64092.1| DNA polymerase I [Meiothermus silvanus DSM 9946]
Length = 846
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + +YK R PTPD + +Q +K ++ M +K +EVPG EADDVIG LA ++ +
Sbjct: 84 FRHDNFEAYKAGRAPTPDDLPGQIQKIKEIVEQMGLKRLEVPGYEADDVIGTLAKKAERE 143
Query: 63 GFKIQVVSPNKDS-QILS 79
G+++++V+ ++D+ Q+LS
Sbjct: 144 GYEVRIVTGDRDAFQLLS 161
>gi|359299477|ref|ZP_09185316.1| DNA polymerase I [Haemophilus [parainfluenzae] CCUG 13788]
gi|402304367|ref|ZP_10823437.1| DNA-directed DNA polymerase [Haemophilus sputorum HK 2154]
gi|400377955|gb|EJP30820.1| DNA-directed DNA polymerase [Haemophilus sputorum HK 2154]
Length = 959
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L A IKA+ I +I + GVEADDVIG LAV++ D
Sbjct: 69 FRDELFEQYKSHRPPMPDDLRAQIQPLHAIIKALGIPLISIEGVEADDVIGTLAVQAARD 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKNVLISTGDKDMAQLVNEHIMLI 152
>gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1]
gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1]
Length = 893
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L +YK RP TPD ++Q L Y+K ++A+ +KV+E+ G EADD+I LAV+ +
Sbjct: 67 TFRHKLLETYKAQRPKTPDLLIQQLPYIKRLVEALGMKVLEIEGYEADDIIATLAVKGLS 126
Query: 62 DGFKIQVVSPNKDS-QILSHSLCLLRI 87
+I +V+ +KD Q+++ + + RI
Sbjct: 127 LFDEIFIVTGDKDMLQLVNEKIKVWRI 153
>gi|452823946|gb|EME30952.1| DNA polymerase I [Galdieria sulphuraria]
Length = 1050
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R +YP YK NR P + +GL Y+KA + A+ I +IEV EADDVIG L +
Sbjct: 134 RRLIYPDYKRNRSKLPTAIEKGLPYIKALVSALGISIIEVASTEADDVIGSLVKYCTSNN 193
Query: 64 FKIQVVSPNKDS-QILSHSLCLLRIAPR 90
F ++VS +KD Q+L S C++ + PR
Sbjct: 194 FVAKIVSADKDFLQLLQESTCVI-LRPR 220
>gi|358013037|ref|ZP_09144847.1| DNA polymerase I [Acinetobacter sp. P8-3-8]
Length = 924
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L P YK +RP P+ + Q + YL A I+A+ I + +PG EADD+IG LA R+
Sbjct: 63 TFRHELSPIYKGDRPSMPEELAQQIPYLHALIRALGIPLHMLPGAEADDIIGTLAKRAEK 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
+G+++ + + +KD +Q+++ + L
Sbjct: 123 EGYQVLISTGDKDMAQLVTEKVTL 146
>gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
Length = 893
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L +YK RP TPD ++Q L Y+K ++A+ +KV+E+ G EADD+I LAV+ +
Sbjct: 67 TFRHKLLETYKAQRPKTPDLLIQQLPYIKRLVEALGMKVLEIEGYEADDIIATLAVKGLS 126
Query: 62 DGFKIQVVSPNKDS-QILSHSLCLLRI 87
+I +V+ +KD Q+++ + + RI
Sbjct: 127 LFDEIFIVTGDKDMLQLVNEKIKVWRI 153
>gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34]
gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34]
Length = 923
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L A IKAM + +I + GVEADDVIG L+ ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRSQIEPLHAVIKAMGLPLIAISGVEADDVIGTLSTQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 QGMPVLISTGDKDMAQLVDQNVTLI 152
>gi|386390037|ref|ZP_10074834.1| DNA-directed DNA polymerase [Haemophilus paraphrohaemolyticus
HK411]
gi|385694079|gb|EIG24705.1| DNA-directed DNA polymerase [Haemophilus paraphrohaemolyticus
HK411]
Length = 950
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L A IKA+ I +I V GVEADDVIG LAV++ +
Sbjct: 69 FRDELFEQYKSHRPPMPDELRSQIQPLHAIIKALGIPLISVEGVEADDVIGTLAVQAAKE 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++++ + L+
Sbjct: 129 GKHVLISTGDKDMAQLVNNHIMLI 152
>gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Photobacterium angustum S14]
gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14]
Length = 923
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L A IKAM + +I + GVEADDVIG L+ ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRSQIEPLHAVIKAMGLPLIAISGVEADDVIGTLSTQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 QGMPVLISTGDKDMAQLVDQNVTLI 152
>gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
gi|418045679|ref|ZP_12683774.1| DNA polymerase I [Thermotoga maritima MSB8]
gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
gi|351676564|gb|EHA59717.1| DNA polymerase I [Thermotoga maritima MSB8]
Length = 893
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L +YK RP TPD ++Q L Y+K ++A+ +KV+EV G EADD+I LAV+ +
Sbjct: 67 TFRHKLLETYKAQRPKTPDLLIQQLPYIKKLVEALGMKVLEVEGYEADDIIATLAVKGLP 126
Query: 62 DGFKIQVVSPNKDS-QILSHSLCLLRI 87
+I +V+ +KD Q+++ + + RI
Sbjct: 127 LFDEIFIVTGDKDMLQLVNEKIKVWRI 153
>gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
Length = 901
Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +YP YK NRPP P+ + +Q L I A+ +I GVEADDVIG LA +++ +
Sbjct: 68 FRHQIYPDYKANRPPMPEDLAVQIQPLHQLITALGFPLIMESGVEADDVIGTLARQALAE 127
Query: 63 GFKIQVVSPNKD-SQILSHS 81
+++ + S +KD +Q+L+H+
Sbjct: 128 DYQVIISSGDKDMTQLLTHA 147
>gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2]
gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2]
Length = 893
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L +YK RP TPD ++Q L Y+K ++A+ +KV+EV G EADD+I LAV+ +
Sbjct: 67 TFRHKLLETYKAQRPKTPDLLIQQLPYIKKLVEALGMKVLEVEGYEADDIIATLAVKGLP 126
Query: 62 DGFKIQVVSPNKDS-QILSHSLCLLRI 87
+I +V+ +KD Q+++ + + RI
Sbjct: 127 LFDEIFIVTGDKDMLQLVNEKIKVWRI 153
>gi|145347581|ref|XP_001418242.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578471|gb|ABO96535.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 233
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 51/73 (69%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH ++ YK NRPPTP+ +++ + ++ ++ M + ++ + GVEADD+IG ++ R+ D
Sbjct: 65 TFRHEMFVEYKANRPPTPEPLLELIPKVEQLVRDMGVPLLRLSGVEADDIIGTVSRRASD 124
Query: 62 DGFKIQVVSPNKD 74
GF++ + SP+KD
Sbjct: 125 AGFRVSICSPDKD 137
>gi|403253516|ref|ZP_10919817.1| DNA polymerase I [Thermotoga sp. EMP]
gi|402811050|gb|EJX25538.1| DNA polymerase I [Thermotoga sp. EMP]
Length = 893
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L +YK RP TPD ++Q L Y+K ++A+ +KV+EV G EADD+I LAV+ +
Sbjct: 67 TFRHKLLETYKAQRPKTPDLLIQQLPYIKKLVEALGMKVLEVEGYEADDIIATLAVKGLP 126
Query: 62 DGFKIQVVSPNKDS-QILSHSLCLLRI 87
+I +V+ +KD Q+++ + + RI
Sbjct: 127 LFDEIFIVTGDKDMLQLVNEKIKVWRI 153
>gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila]
Length = 893
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L +YK RP TPD ++Q L Y+K ++A+ +KV+EV G EADD+I LAV+ +
Sbjct: 67 TFRHKLLETYKAQRPKTPDLLIQQLPYIKKLVEALGMKVLEVEGYEADDIIATLAVKGLP 126
Query: 62 DGFKIQVVSPNKDS-QILSHSLCLLRI 87
+I +V+ +KD Q+++ + + RI
Sbjct: 127 LFDEIFIVTGDKDMLQLVNEKIKVWRI 153
>gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 923
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR ++P YK NRPP PD + ++ L A IKAM + +I + GVEADDVIG LA ++
Sbjct: 68 TFRDDMFPEYKANRPPMPDDLRGQIEPLHAVIKAMGLPLISISGVEADDVIGTLATQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 QGMPVLISTGDKDMAQLVDQNITLI 152
>gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB]
gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB]
Length = 906
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK +RPP PD +VQ ++ L A+IKA ++ V GVEADDVIG LA + D
Sbjct: 64 FRDDWYPEYKAHRPPMPDDLVQQIEPLHAAIKAAGWPLLMVDGVEADDVIGTLATNATAD 123
Query: 63 GFKIQVVSPNKD-SQILS 79
G + + + +KD +Q++S
Sbjct: 124 GIETLISTGDKDLTQLVS 141
>gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK]
gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK]
Length = 922
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L A IKAM + +I + GVEADDVIG LA ++
Sbjct: 68 TFRDDIYPEYKANRPPMPDDLRGQIEPLHAVIKAMGLPLIAISGVEADDVIGTLATQASK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 AGMPVLISTGDKDMAQLVDENVTLI 152
>gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9]
gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9]
Length = 937
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L A IKAM + +I + GVEADDVIG LA ++
Sbjct: 83 TFRDDIYPEYKANRPPMPDDLRGQIEPLHAVIKAMGLPLIAISGVEADDVIGTLATQASK 142
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 143 AGMPVLISTGDKDMAQLVDENVTLI 167
>gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
Length = 957
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L IKA+ I +I + GVEADDVIG LAV++ +D
Sbjct: 69 FRDELFEQYKSHRPPMPDNLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQAAND 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKNVLISTGDKDMAQLVNDHIMLI 152
>gi|68171574|ref|ZP_00544948.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa]
gi|88658019|ref|YP_506910.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas]
gi|67999000|gb|EAM85677.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa]
gi|88599476|gb|ABD44945.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas]
Length = 944
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRP PD ++ L+ ++ A +I EV G EADDVI L+ +
Sbjct: 63 NFRHNIYPEYKGNRPKLPDDLIPQFSLLREAVNAFNIASEEVVGYEADDVIATLSKKYCK 122
Query: 62 -DGFKIQVVSPNKD-SQILSHSLCLL 85
G K+ VV+ +KD Q+L +++C+
Sbjct: 123 LQGVKVTVVTSDKDLLQLLKYNICIF 148
>gi|350551678|ref|ZP_08920891.1| DNA polymerase I [Thiorhodospira sibirica ATCC 700588]
gi|349796816|gb|EGZ50599.1| DNA polymerase I [Thiorhodospira sibirica ATCC 700588]
Length = 928
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH+LYP YK RPP PD +V + L+ I AM + + VP VEADDVI L +++
Sbjct: 69 NFRHSLYPDYKAQRPPMPDELVAQIAPLQEVIDAMGLLRLAVPEVEADDVIATLTTQALQ 128
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G ++ + + +KD +Q++ + LL
Sbjct: 129 RGLEVLISTGDKDLAQLVGPRISLL 153
>gi|371777453|ref|ZP_09483775.1| DNA polymerase I [Anaerophaga sp. HS1]
Length = 921
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ L+P YK NR TP+ + + + Y+K + A +IK+++V G EADDV+G L+ + +
Sbjct: 70 FRNYLFPDYKANREDTPEDIKKAVPYIKKILDAFNIKIVQVDGYEADDVVGTLSRMASNA 129
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLR 86
GFK +V+P+KD +Q+++ + + +
Sbjct: 130 GFKTFMVTPDKDYAQLVTDDIVMYK 154
>gi|421693829|ref|ZP_16133461.1| DNA-directed DNA polymerase [Acinetobacter baumannii WC-692]
gi|404569668|gb|EKA74753.1| DNA-directed DNA polymerase [Acinetobacter baumannii WC-692]
Length = 923
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
Length = 949
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK+NRPP PD + + ++ L ++AM + ++ + GVEADDVIG LA+++ D
Sbjct: 86 FRDELYEEYKSNRPPMPDDLREQIEPLHEMVQAMGLPLLSITGVEADDVIGTLALKAASD 145
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 146 GRNVLISTGDKDMAQLVTPNITLI 169
>gi|169634321|ref|YP_001708057.1| DNA polymerase I [Acinetobacter baumannii SDF]
gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
exonuclease [Acinetobacter baumannii]
Length = 923
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|425071066|ref|ZP_18474172.1| DNA polymerase I [Proteus mirabilis WGLW4]
gi|404599891|gb|EKB00344.1| DNA polymerase I [Proteus mirabilis WGLW4]
Length = 949
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK+NRPP PD + + ++ L ++AM + ++ + GVEADDVIG LA+++ D
Sbjct: 86 FRDELYEEYKSNRPPMPDDLREQIEPLHEMVQAMGLPLLSITGVEADDVIGTLALKAASD 145
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 146 GRNVLISTGDKDMAQLVTPNITLI 169
>gi|445486330|ref|ZP_21457388.1| DNA-directed DNA polymerase [Acinetobacter baumannii AA-014]
gi|444769815|gb|ELW93983.1| DNA-directed DNA polymerase [Acinetobacter baumannii AA-014]
Length = 923
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|421662129|ref|ZP_16102297.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC110]
gi|408714932|gb|EKL60062.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC110]
Length = 923
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|421656345|ref|ZP_16096653.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-72]
gi|408505734|gb|EKK07453.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-72]
Length = 923
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|425069608|ref|ZP_18472723.1| DNA polymerase I [Proteus mirabilis WGLW6]
gi|404597034|gb|EKA97541.1| DNA polymerase I [Proteus mirabilis WGLW6]
Length = 949
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK+NRPP PD + + ++ L ++AM + ++ + GVEADDVIG LA+++ D
Sbjct: 86 FRDELYEEYKSNRPPMPDDLREQIEPLHEMVQAMGLPLLSITGVEADDVIGTLALKAASD 145
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 146 GRNVLISTGDKDMAQLVTPNITLI 169
>gi|417553708|ref|ZP_12204777.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-81]
gi|417561080|ref|ZP_12211959.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC137]
gi|421201546|ref|ZP_15658705.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC109]
gi|421454324|ref|ZP_15903673.1| DNA-directed DNA polymerase [Acinetobacter baumannii IS-123]
gi|421634261|ref|ZP_16074880.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-13]
gi|421805731|ref|ZP_16241607.1| DNA-directed DNA polymerase [Acinetobacter baumannii WC-A-694]
gi|395523662|gb|EJG11751.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC137]
gi|395563578|gb|EJG25231.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC109]
gi|400213091|gb|EJO44048.1| DNA-directed DNA polymerase [Acinetobacter baumannii IS-123]
gi|400390125|gb|EJP57172.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-81]
gi|408704979|gb|EKL50335.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-13]
gi|410407993|gb|EKP59968.1| DNA-directed DNA polymerase [Acinetobacter baumannii WC-A-694]
Length = 923
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|218288809|ref|ZP_03493072.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1]
gi|218241167|gb|EED08343.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1]
Length = 974
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 48/73 (65%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH + +YK R TPD +VQ + +++A+SI +IE+ EADDVIG LA R+ +
Sbjct: 155 TFRHADFAAYKGTRQETPDELVQQFPLARRTLEALSIPMIEIDQYEADDVIGTLAKRAAE 214
Query: 62 DGFKIQVVSPNKD 74
GF ++VVS +KD
Sbjct: 215 AGFDVRVVSGDKD 227
>gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320]
gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320]
Length = 932
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR LY YK+NRPP PD + + ++ L ++AM + ++ + GVEADDVIG LA+++
Sbjct: 68 TFRDELYEEYKSNRPPMPDDLREQIEPLHEMVQAMGLPLLSITGVEADDVIGTLALKAAS 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
DG + + + +KD +Q+++ ++ L+
Sbjct: 128 DGRNVLISTGDKDMAQLVTPNITLI 152
>gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
Length = 923
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|421625650|ref|ZP_16066496.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC098]
gi|421807914|ref|ZP_16243771.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC035]
gi|408697744|gb|EKL43250.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC098]
gi|410416093|gb|EKP67868.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC035]
Length = 923
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900]
gi|421677461|ref|ZP_16117353.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC111]
gi|410393217|gb|EKP45571.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC111]
Length = 923
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114]
gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
exonuclease [Vibrio fischeri ES114]
Length = 932
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ +YP YK NRPP PD + ++ L IKAM + ++ +PGVEADDVIG LA ++
Sbjct: 69 FRNDMYPEYKANRPPMPDDLRCQIEPLHKLIKAMGLPLVSIPGVEADDVIGTLASQASKA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 129 GIPVLISTGDKDMAQLVDENVTLI 152
>gi|403675881|ref|ZP_10937984.1| DNA polymerase I [Acinetobacter sp. NCTC 10304]
Length = 918
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|345864936|ref|ZP_08817131.1| DNA polymerase I [endosymbiont of Tevnia jerichonana (vent Tica)]
gi|345124016|gb|EGW53901.1| DNA polymerase I [endosymbiont of Tevnia jerichonana (vent Tica)]
Length = 899
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FR+ LYP YK NRPP P+ + Q ++ L ++AM + ++ +PGVEADDVIG LA ++
Sbjct: 66 SFRNQLYPDYKANRPPMPEELRQQIEPLHQIVRAMGLPLLMIPGVEADDVIGTLAQQAAQ 125
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 126 LGMQTLISTGDKDMAQLVNAQVALI 150
>gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|452955870|gb|EME61267.1| DNA polymerase I [Acinetobacter baumannii MSP4-16]
Length = 923
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
Length = 923
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
Length = 921
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH YP YK R TP+ + + + +K I+A +I +IEV G EADDVIG +A R+
Sbjct: 65 TFRHEAYPDYKAQREATPEDIKRSVPIIKDIIRAYNIPIIEVKGFEADDVIGTVAKRAAA 124
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLR 86
+G ++++V+P+KD +Q++ ++ + R
Sbjct: 125 EGIEVRMVTPDKDYAQLVGPNVLMQR 150
>gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU]
gi|332873987|ref|ZP_08441922.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059]
gi|384130612|ref|YP_005513224.1| DNA polymerase I [Acinetobacter baumannii 1656-2]
gi|384141895|ref|YP_005524605.1| DNA polymerase I [Acinetobacter baumannii MDR-ZJ06]
gi|385236204|ref|YP_005797543.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715]
gi|387125150|ref|YP_006291032.1| DNA polymerase I [Acinetobacter baumannii MDR-TJ]
gi|407931540|ref|YP_006847183.1| DNA polymerase I [Acinetobacter baumannii TYTH-1]
gi|416146713|ref|ZP_11601376.1| DNA polymerase I [Acinetobacter baumannii AB210]
gi|417571333|ref|ZP_12222190.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC189]
gi|417577222|ref|ZP_12228067.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-17]
gi|417871247|ref|ZP_12516190.1| DNA polymerase I [Acinetobacter baumannii ABNIH1]
gi|417875917|ref|ZP_12520717.1| DNA polymerase I [Acinetobacter baumannii ABNIH2]
gi|417879589|ref|ZP_12524146.1| DNA polymerase I [Acinetobacter baumannii ABNIH3]
gi|417882323|ref|ZP_12526625.1| DNA polymerase I [Acinetobacter baumannii ABNIH4]
gi|421201752|ref|ZP_15658907.1| DNA polymerase I [Acinetobacter baumannii AC12]
gi|421535322|ref|ZP_15981584.1| DNA polymerase I [Acinetobacter baumannii AC30]
gi|421631315|ref|ZP_16072000.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC180]
gi|421688457|ref|ZP_16128157.1| DNA-directed DNA polymerase [Acinetobacter baumannii IS-143]
gi|421791458|ref|ZP_16227634.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-2]
gi|424053635|ref|ZP_17791166.1| DNA polymerase I [Acinetobacter baumannii Ab11111]
gi|424064572|ref|ZP_17802056.1| DNA polymerase I [Acinetobacter baumannii Ab44444]
gi|425753804|ref|ZP_18871672.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-113]
gi|445465206|ref|ZP_21449984.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC338]
gi|445481479|ref|ZP_21455923.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-78]
gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
[Acinetobacter baumannii ACICU]
gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2]
gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715]
gi|332737728|gb|EGJ68620.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059]
gi|333366094|gb|EGK48108.1| DNA polymerase I [Acinetobacter baumannii AB210]
gi|342224533|gb|EGT89563.1| DNA polymerase I [Acinetobacter baumannii ABNIH2]
gi|342226068|gb|EGT91044.1| DNA polymerase I [Acinetobacter baumannii ABNIH1]
gi|342227687|gb|EGT92600.1| DNA polymerase I [Acinetobacter baumannii ABNIH3]
gi|342238064|gb|EGU02506.1| DNA polymerase I [Acinetobacter baumannii ABNIH4]
gi|347592388|gb|AEP05109.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
exonuclease [Acinetobacter baumannii MDR-ZJ06]
gi|385879642|gb|AFI96737.1| DNA polymerase I [Acinetobacter baumannii MDR-TJ]
gi|395551781|gb|EJG17790.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC189]
gi|395570443|gb|EJG31105.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-17]
gi|398328637|gb|EJN44760.1| DNA polymerase I [Acinetobacter baumannii AC12]
gi|404561200|gb|EKA66436.1| DNA-directed DNA polymerase [Acinetobacter baumannii IS-143]
gi|404667121|gb|EKB35042.1| DNA polymerase I [Acinetobacter baumannii Ab11111]
gi|404672655|gb|EKB40459.1| DNA polymerase I [Acinetobacter baumannii Ab44444]
gi|407900121|gb|AFU36952.1| DNA polymerase I [Acinetobacter baumannii TYTH-1]
gi|408694637|gb|EKL40203.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC180]
gi|409986875|gb|EKO43066.1| DNA polymerase I [Acinetobacter baumannii AC30]
gi|410402963|gb|EKP55066.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-2]
gi|425497698|gb|EKU63803.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-113]
gi|444770271|gb|ELW94428.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-78]
gi|444779338|gb|ELX03332.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC338]
Length = 923
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|445421530|ref|ZP_21435932.1| DNA-directed DNA polymerase [Acinetobacter sp. WC-743]
gi|444757498|gb|ELW82020.1| DNA-directed DNA polymerase [Acinetobacter sp. WC-743]
Length = 920
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L P YK +RP P+ + Q + YL A I+A+ I + +PG EADD+IG LA R+
Sbjct: 63 TFRHQLSPIYKGDRPSMPEELSQQIPYLHALIRALGIPLHTLPGAEADDIIGTLAKRAEK 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
+G+++ + + +KD +Q+++ + L
Sbjct: 123 EGYQVLISTGDKDMAQLVTDKVTL 146
>gi|445451412|ref|ZP_21444765.1| DNA-directed DNA polymerase [Acinetobacter baumannii WC-A-92]
gi|444755083|gb|ELW79676.1| DNA-directed DNA polymerase [Acinetobacter baumannii WC-A-92]
Length = 923
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|421675960|ref|ZP_16115879.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC065]
gi|421692418|ref|ZP_16132069.1| DNA-directed DNA polymerase [Acinetobacter baumannii IS-116]
gi|404559704|gb|EKA64955.1| DNA-directed DNA polymerase [Acinetobacter baumannii IS-116]
gi|410381477|gb|EKP34043.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC065]
Length = 923
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|417546460|ref|ZP_12197546.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC032]
gi|421666440|ref|ZP_16106532.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC087]
gi|421670844|ref|ZP_16110826.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC099]
gi|400384348|gb|EJP43026.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC032]
gi|410383141|gb|EKP35674.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC099]
gi|410388365|gb|EKP40804.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC087]
Length = 923
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|423684810|ref|ZP_17659618.1| DNA polymerase I [Vibrio fischeri SR5]
gi|371495857|gb|EHN71451.1| DNA polymerase I [Vibrio fischeri SR5]
Length = 932
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ +YP YK NRPP PD + ++ L IKAM + ++ +PGVEADDVIG LA ++
Sbjct: 69 FRNDMYPEYKANRPPMPDDLRCQIEPLHKLIKAMGLPLVSIPGVEADDVIGTLASQASKA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 129 GIPVLISTGDKDMAQLVDENVTLI 152
>gi|445400238|ref|ZP_21429888.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-57]
gi|444783620|gb|ELX07479.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-57]
Length = 923
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057]
gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056]
gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059]
gi|417574285|ref|ZP_12225139.1| DNA-directed DNA polymerase [Acinetobacter baumannii Canada BC-5]
gi|421798637|ref|ZP_16234653.1| DNA-directed DNA polymerase [Acinetobacter baumannii Canada BC1]
gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057]
gi|400209853|gb|EJO40823.1| DNA-directed DNA polymerase [Acinetobacter baumannii Canada BC-5]
gi|410412078|gb|EKP63938.1| DNA-directed DNA polymerase [Acinetobacter baumannii Canada BC1]
Length = 923
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|169797137|ref|YP_001714930.1| DNA polymerase I [Acinetobacter baumannii AYE]
gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058]
gi|332856876|ref|ZP_08436285.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150]
gi|332867222|ref|ZP_08437487.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113]
gi|417548876|ref|ZP_12199957.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-18]
gi|417565676|ref|ZP_12216550.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC143]
gi|421622234|ref|ZP_16063141.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC074]
gi|421642866|ref|ZP_16083377.1| DNA-directed DNA polymerase [Acinetobacter baumannii IS-235]
gi|421645644|ref|ZP_16086108.1| DNA-directed DNA polymerase [Acinetobacter baumannii IS-251]
gi|421651961|ref|ZP_16092326.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC0162]
gi|421657744|ref|ZP_16097992.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-83]
gi|421701238|ref|ZP_16140744.1| DNA-directed DNA polymerase [Acinetobacter baumannii IS-58]
gi|421796226|ref|ZP_16232293.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-21]
gi|424061103|ref|ZP_17798593.1| DNA polymerase I [Acinetobacter baumannii Ab33333]
gi|425747289|ref|ZP_18865299.1| DNA-directed DNA polymerase [Acinetobacter baumannii WC-348]
gi|445459622|ref|ZP_21447645.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC047]
gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
exonuclease [Acinetobacter baumannii AYE]
gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
gi|332726930|gb|EGJ58435.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150]
gi|332734161|gb|EGJ65293.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113]
gi|395557432|gb|EJG23433.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC143]
gi|400389175|gb|EJP52247.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-18]
gi|404567840|gb|EKA72955.1| DNA-directed DNA polymerase [Acinetobacter baumannii IS-58]
gi|404666785|gb|EKB34715.1| DNA polymerase I [Acinetobacter baumannii Ab33333]
gi|408507082|gb|EKK08784.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC0162]
gi|408511432|gb|EKK13080.1| DNA-directed DNA polymerase [Acinetobacter baumannii IS-235]
gi|408518272|gb|EKK19798.1| DNA-directed DNA polymerase [Acinetobacter baumannii IS-251]
gi|408696290|gb|EKL41832.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC074]
gi|408711533|gb|EKL56738.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-83]
gi|410399741|gb|EKP51925.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-21]
gi|425494177|gb|EKU60392.1| DNA-directed DNA polymerase [Acinetobacter baumannii WC-348]
gi|444773816|gb|ELW97907.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC047]
Length = 923
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|421702341|ref|ZP_16141825.1| DNA polymerase I [Acinetobacter baumannii ZWS1122]
gi|421706080|ref|ZP_16145500.1| DNA polymerase I [Acinetobacter baumannii ZWS1219]
gi|407194513|gb|EKE65653.1| DNA polymerase I [Acinetobacter baumannii ZWS1122]
gi|407194715|gb|EKE65852.1| DNA polymerase I [Acinetobacter baumannii ZWS1219]
Length = 923
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|387773168|ref|ZP_10128763.1| DNA-directed DNA polymerase [Haemophilus parahaemolyticus HK385]
gi|386905208|gb|EIJ69979.1| DNA-directed DNA polymerase [Haemophilus parahaemolyticus HK385]
Length = 950
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + +Q L A IKA+ I +I V GVEADDVIG LAV++
Sbjct: 68 TFRDELFEQYKSHRPPMPDELRSQIQPLHAIIKALGIPLISVEGVEADDVIGTLAVQAAK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G + + + +KD +Q+++ + L+
Sbjct: 128 EGKHVLISTGDKDMAQLVNDHIMLI 152
>gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11]
gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11]
Length = 932
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ +YP YK NRPP PD + ++ L IKAM + ++ +PGVEADDVIG LA ++
Sbjct: 69 FRNDMYPEYKANRPPMPDDLRCQIEPLHKLIKAMGLPLVSIPGVEADDVIGTLASQASKA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 129 GIPVLISTGDKDMAQLVDENVTLI 152
>gi|406039503|ref|ZP_11046858.1| DNA polymerase I [Acinetobacter ursingii DSM 16037 = CIP 107286]
Length = 920
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L P YK +RP PD + Q + YL A IKA+ I + +PG EADD+IG LA +
Sbjct: 63 TFRHELSPIYKGDRPSMPDELAQQIPYLHALIKALGIPLYMLPGAEADDIIGTLAKHAEK 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
+G ++ + + +KD +Q+++ + L
Sbjct: 123 EGHQVLISTGDKDMAQLVNEKVTL 146
>gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
Length = 879
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 20 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVKE 79
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 80 GHHVLISTGDKD 91
>gi|403054037|ref|ZP_10908521.1| DNA polymerase I [Acinetobacter bereziniae LMG 1003]
Length = 920
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L P YK +RP P+ + Q + YL A I+A+ I + +PG EADD+IG LA R+
Sbjct: 63 TFRHQLSPIYKGDRPSMPEELSQQIPYLHALIRALGIPLHTLPGAEADDIIGTLAKRAEK 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
+G+++ + + +KD +Q+++ + L
Sbjct: 123 EGYQVLISTGDKDMAQLVTDKVTL 146
>gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
Length = 912
Score = 71.2 bits (173), Expect = 8e-11, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK +RPP PD + +Q LK I+AM + ++EVPGVEADDVIG LA ++ +
Sbjct: 68 FRDELFDQYKAHRPPMPDELRAQIQPLKDIIRAMGLPLLEVPGVEADDVIGTLARQAAEA 127
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ + LL
Sbjct: 128 GQPVVISTGDKDMAQLVDEQVTLL 151
>gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
Length = 927
Score = 70.9 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP YK NRPP PD + +Q + + A+ I ++ V GVEADDVIG LA ++ D
Sbjct: 63 FRDDLYPQYKANRPPMPDELRAQVQPMCDIVHALGIDILRVDGVEADDVIGTLATQAADA 122
Query: 63 GFKIQVVSPNKD 74
G ++ + + +KD
Sbjct: 123 GMEVTISTGDKD 134
>gi|402492609|ref|ZP_10839369.1| DNA polymerase I [Aquimarina agarilytica ZC1]
Length = 943
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R ++P YK NR TP+ + + Y++ +KAM I +IE GVEADD+IG LA ++ +G
Sbjct: 70 RTEIFPEYKANRDETPEAIKIAVPYIQEILKAMHIPIIEQMGVEADDLIGTLAKQAEKEG 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
F+ +V+P+KD +Q++S ++ + + A G
Sbjct: 130 FQTYMVTPDKDYAQLVSENIFMYKPARMG 158
>gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
Length = 922
Score = 70.9 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 47/72 (65%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NRPP PD MV+ ++ L A+I A+ ++ + GVEADDVIG LA ++
Sbjct: 67 FRDDWYPEYKANRPPMPDDMVRQIEPLNAAIAALGWPLLSIDGVEADDVIGTLATQAAAA 126
Query: 63 GFKIQVVSPNKD 74
G ++ V + +KD
Sbjct: 127 GIEVVVSTGDKD 138
>gi|115424490|dbj|BAF33373.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 942
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH + +YK R TPD +VQ + +++A+SI ++E+ EADDVIG LA R+ +
Sbjct: 123 TFRHADFAAYKGTRQETPDELVQQFPLARRTLEALSIPMVEIDQYEADDVIGTLAKRAAE 182
Query: 62 DGFKIQVVSPNKD 74
GF ++VVS +KD
Sbjct: 183 AGFDVRVVSGDKD 195
>gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 957
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L IKA+ I +I + GVEADDVIG LAV++ +D
Sbjct: 69 FRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQAAND 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKNVLISTGDKDMAQLVNDHIMLI 152
>gi|407692488|ref|YP_006817277.1| DNA polymerase I [Actinobacillus suis H91-0380]
gi|407388545|gb|AFU19038.1| DNA polymerase I [Actinobacillus suis H91-0380]
Length = 957
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L IKA+ I +I + GVEADDVIG LAV++ +D
Sbjct: 69 FRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQAAND 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKNVLISTGDKDMAQLVNDHIMLI 152
>gi|343495823|ref|ZP_08733935.1| DNA polymerase I [Vibrio nigripulchritudo ATCC 27043]
gi|342822158|gb|EGU56909.1| DNA polymerase I [Vibrio nigripulchritudo ATCC 27043]
Length = 929
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK NRPP PD + ++ L IKAM + +I VPGVEADDVIG LA ++
Sbjct: 69 FRDDMYPEYKANRPPMPDDLRCQIEPLYEVIKAMGLPLICVPGVEADDVIGTLAAQASKA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 129 GMPVLISTGDKDMAQLVDENVTLI 152
>gi|219815945|gb|ACL37071.1| truncated DNA polymerase I [uncultured bacterium]
Length = 557
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
RHT + YK NR P+ ++ L +K I A +I V+E+ G EADDVIG LA ++ D G
Sbjct: 68 RHTDFAEYKANRQAAPEDLISALPDIKKIITAFNIPVVELDGYEADDVIGTLAWQAADKG 127
Query: 64 FKIQVVSPNKD-SQILSHS 81
+++ +V+P+KD Q+L H+
Sbjct: 128 YEVFMVTPDKDYGQLLIHN 146
>gi|255081196|ref|XP_002507820.1| predicted protein [Micromonas sp. RCC299]
gi|226523096|gb|ACO69078.1| predicted protein [Micromonas sp. RCC299]
Length = 223
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH ++ YK NRPPTP + + + + ++ M + ++ GVEADD+IG +A RSV+
Sbjct: 65 TFRHEMFTDYKANRPPTPPELKETIPRVIEMVRRMGVPLLMTSGVEADDIIGTVARRSVE 124
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAP 89
G + VVSP+KD Q+L L + P
Sbjct: 125 RGLHVSVVSPDKDFFQLLGPRLSARGLVP 153
>gi|307249707|ref|ZP_07531687.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306858273|gb|EFM90349.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 686
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L IKA+ I +I + GVEADDVIG LAV++ +D
Sbjct: 69 FRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQAAND 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKNVLISTGDKDMAQLVNDHIMLI 152
>gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
Length = 893
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L +YK RP TPD +VQ L Y+K I+A+ KV+E+ G EADD+I LAV+
Sbjct: 67 TFRHKLLEAYKAQRPKTPDLLVQQLPYIKRLIEALGFKVLELEGYEADDIIATLAVKGCT 126
Query: 62 DGFKIQVVSPNKDS-QILSHSLCLLRI 87
+I +++ +KD Q+++ + + RI
Sbjct: 127 FFDEIFIITGDKDMLQLVNEKIKVWRI 153
>gi|406036838|ref|ZP_11044202.1| DNA polymerase I [Acinetobacter parvus DSM 16617 = CIP 108168]
Length = 926
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPSMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVLE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|167945527|ref|ZP_02532601.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 110
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FR+ LYP YK NRPP P+ + Q ++ L ++AM + ++ +PGVEADDVIG LA ++
Sbjct: 26 SFRNQLYPDYKANRPPMPEELRQQIEPLHQIVRAMGLPLLMIPGVEADDVIGTLAQQAAQ 85
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 86 LGMQSLISTGDKDMAQLVNAQVALI 110
>gi|303237984|ref|ZP_07324527.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
gi|302481774|gb|EFL44826.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
Length = 920
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 64/99 (64%), Gaps = 6/99 (6%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FRH +P YK R TP+ + + Y+K ++AM I +++ G EADD+IG +A+++
Sbjct: 63 LTFRHEAFPDYKAQREETPEDIKLAVPYIKQILEAMRIPILQTDGFEADDIIGTVALKAG 122
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
+DG + +++P+KD Q++ +++ + R PR G+E++
Sbjct: 123 NDGIETYMLTPDKDYGQLIRNNIFMYR--PRHGGGYEII 159
>gi|345871043|ref|ZP_08822992.1| DNA polymerase I [Thiorhodococcus drewsii AZ1]
gi|343921197|gb|EGV31921.1| DNA polymerase I [Thiorhodococcus drewsii AZ1]
Length = 900
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFR+ LYP YK +RPP P+ + + +Q L+ I+AM + ++ +P VEADDVIG LA ++ +
Sbjct: 66 NFRNDLYPDYKAHRPPMPEDLREQIQPLQDIIRAMGLPLLVIPEVEADDVIGTLATQAAE 125
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ + L+
Sbjct: 126 QGIQTLISTGDKDMAQLVGERVTLV 150
>gi|387812902|ref|YP_005428379.1| DNA polymerase I [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381337909|emb|CCG93956.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 965
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y YK NRPP PD + ++ + ++AM + ++ VPGVEADDVIG LA +
Sbjct: 125 TFRHDMYEEYKANRPPMPDDLAVQIEPIHEIVRAMGLPLLIVPGVEADDVIGTLAHEATS 184
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q++S + L+
Sbjct: 185 KGIDVVVSTGDKDMAQLVSDHVTLI 209
>gi|225850014|ref|YP_002730248.1| DNA polymerase I [Persephonella marina EX-H1]
gi|225644888|gb|ACO03074.1| DNA polymerase I [Persephonella marina EX-H1]
Length = 296
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 47/72 (65%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TPD + + +K IK IK++E+PG EADD+I +A ++VD
Sbjct: 65 FRHEKYKEYKATRKETPDELKVQIPKIKEIIKLWGIKILEIPGYEADDIIATIAKKAVDK 124
Query: 63 GFKIQVVSPNKD 74
GF++ +V+P+KD
Sbjct: 125 GFEVIIVTPDKD 136
>gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8]
gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8]
Length = 908
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y YK NRPP PD + ++ + ++AM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRHDMYEEYKANRPPMPDDLAVQIEPIHEIVRAMGLPLLIVPGVEADDVIGTLAHEATS 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q++S + L+
Sbjct: 128 KGIDVVVSTGDKDMAQLVSDHVTLI 152
>gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae
bacterium]
Length = 894
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y YK NR P+ + + + + +KA +I + VPG EADD+IG LA ++ +
Sbjct: 67 TFRHKMYEDYKANRDAPPEDLAKQFPHFEPLVKAYNIHGVRVPGFEADDIIGTLAKKAAE 126
Query: 62 DGFKIQVVSPNKD 74
+GFK+ +VS +KD
Sbjct: 127 EGFKVVIVSGDKD 139
>gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202]
gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202]
Length = 950
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L IKA+ I +I + GVEADDVIG LAV++ D
Sbjct: 69 FRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQAAKD 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKDVLISTGDKDMAQLVNEHIMLI 152
>gi|400406153|ref|YP_006588901.1| DNA polymerase I [secondary endosymbiont of Heteropsylla cubana]
gi|400364406|gb|AFP85473.1| DNA polymerase I [secondary endosymbiont of Heteropsylla cubana]
Length = 932
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L+ YK +R P PD ++ ++ L IKAM + ++E+ G EADD+IG LA+ +
Sbjct: 69 FRHQLFKDYKAHRAPMPDDLISQIKPLHDMIKAMGLSLLEINGFEADDIIGTLAIAAERS 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIA 88
G ++ + + +KD +Q++S+++ L+ A
Sbjct: 129 GLEVLISTGDKDMAQLVSNNISLINTA 155
>gi|399927722|ref|ZP_10785080.1| DNA polymerase I [Myroides injenensis M09-0166]
Length = 938
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R ++P YK NR TP+ + + Y+K +KAM I +IE G EADD+IG L+ ++ +G
Sbjct: 70 RVAIFPEYKANRDETPEAIKIAVPYIKEILKAMHIPIIEQKGFEADDLIGTLSKQAEKEG 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
F + +V+P+KD +Q++S ++ + + A G
Sbjct: 130 FSVYMVTPDKDYAQLVSENIFMYKPARMG 158
>gi|424743264|ref|ZP_18171577.1| DNA-directed DNA polymerase [Acinetobacter baumannii WC-141]
gi|422943525|gb|EKU38541.1| DNA-directed DNA polymerase [Acinetobacter baumannii WC-141]
Length = 923
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVLE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|379731646|ref|YP_005323842.1| DNA polymerase I [Saprospira grandis str. Lewin]
gi|378577257|gb|AFC26258.1| DNA polymerase I [Saprospira grandis str. Lewin]
Length = 927
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +Y YK NR P+ + + Y+K I+A +I V+ VP EADDVIG LA ++ +
Sbjct: 67 FRHEMYEPYKANREEQPEDIRLAIPYVKQIIEAFNIPVVAVPNYEADDVIGTLAKQAARE 126
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
GF + +++P+KD +Q++ + L + A G
Sbjct: 127 GFSVYMMTPDKDYAQLVEDQIFLYKPARFG 156
>gi|424056862|ref|ZP_17794379.1| DNA polymerase I [Acinetobacter nosocomialis Ab22222]
gi|425741549|ref|ZP_18859694.1| DNA-directed DNA polymerase [Acinetobacter baumannii WC-487]
gi|407440395|gb|EKF46912.1| DNA polymerase I [Acinetobacter nosocomialis Ab22222]
gi|425492114|gb|EKU58384.1| DNA-directed DNA polymerase [Acinetobacter baumannii WC-487]
Length = 923
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVLE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
Length = 921
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA+ I + +PG EADD+IG L R++ +
Sbjct: 64 FRHKLSPIYKGDRPSMPEELSQQIPYLHALIKALGIPLYSLPGAEADDIIGTLTKRALSE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
Length = 921
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA+ I + +PG EADD+IG L R++ +
Sbjct: 64 FRHKLSPIYKGDRPSMPEELSQQIPYLHALIKALGIPLYSLPGAEADDIIGTLTKRALSE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|445439601|ref|ZP_21441726.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC021]
gi|444751833|gb|ELW76531.1| DNA-directed DNA polymerase [Acinetobacter baumannii OIFC021]
Length = 923
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVLE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
Length = 962
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L I+A+ I +I + GVEADDVIG LAV++ D
Sbjct: 69 FRDDLFEQYKSHRPPMPDELRAQIQPLHNIIRALGIPLISIEGVEADDVIGTLAVQAAQD 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G ++ + + +KD +Q+++ + L+
Sbjct: 129 GKEVLISTGDKDMAQLVNQHIMLI 152
>gi|336423762|ref|ZP_08603882.1| hypothetical protein HMPREF0993_03259 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336002976|gb|EGN33071.1| hypothetical protein HMPREF0993_03259 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 871
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y YK R P D + Q + +K +KAM I++IE G+EADD+IG L+ R
Sbjct: 64 TFRHEMYEEYKGTRKPMADELRQQVPVIKEVLKAMGIRIIEQAGLEADDLIGTLSKRCAQ 123
Query: 62 DGFKIQVVSPNKDSQILSHSLCLLRI 87
G ++ V+S ++D L+ +RI
Sbjct: 124 KGMEVSVISGDRDLLQLATEQVKIRI 149
>gi|167758306|ref|ZP_02430433.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704]
gi|167664203|gb|EDS08333.1| DNA-directed DNA polymerase [Clostridium scindens ATCC 35704]
Length = 871
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y YK R P D + Q + +K +KAM I++IE G+EADD+IG L+ R
Sbjct: 64 TFRHEMYEEYKGTRKPMADELRQQVPVIKEVLKAMGIRIIEQAGLEADDLIGTLSKRCAQ 123
Query: 62 DGFKIQVVSPNKDSQILSHSLCLLRI 87
G ++ V+S ++D L+ +RI
Sbjct: 124 KGMEVSVISGDRDLLQLATEQVKIRI 149
>gi|421789473|ref|ZP_16225731.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-82]
gi|410398604|gb|EKP50815.1| DNA-directed DNA polymerase [Acinetobacter baumannii Naval-82]
Length = 923
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVLE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|375264129|ref|YP_005021572.1| DNA polymerase I [Vibrio sp. EJY3]
gi|369839453|gb|AEX20597.1| DNA polymerase I [Vibrio sp. EJY3]
Length = 930
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I VPGVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAYQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 KGMPVLISTGDKDMAQLVDDNITLI 152
>gi|428215911|ref|YP_007089055.1| DNA polymerase I [Oscillatoria acuminata PCC 6304]
gi|428004292|gb|AFY85135.1| DNA polymerase I [Oscillatoria acuminata PCC 6304]
Length = 973
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 51/73 (69%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +YK++R TP+ + L+YL+ + A++++++ PG EADDV+G LA R+ +
Sbjct: 72 TFRHEADDTYKSDRAETPEDFITDLKYLQELLTALNLQIVTAPGYEADDVLGTLATRASE 131
Query: 62 DGFKIQVVSPNKD 74
GF++++++ ++D
Sbjct: 132 AGFQVKILTGDRD 144
>gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus]
Length = 923
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPSMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVLE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|375137137|ref|YP_004997787.1| DNA polymerase I [Acinetobacter calcoaceticus PHEA-2]
gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
exonuclease [Acinetobacter calcoaceticus PHEA-2]
Length = 923
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVLE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
Length = 923
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPSMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVLE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|118579386|ref|YP_900636.1| ribonuclease H [Pelobacter propionicus DSM 2379]
gi|118502096|gb|ABK98578.1| ribonuclease H [Pelobacter propionicus DSM 2379]
Length = 482
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK +R P + L Y++ ++A++I +E PG EADDVI LA RS D+
Sbjct: 68 FRRQIYPPYKAHRDDMPTDLAAQLPYIRQVVQALNIPALEAPGFEADDVIATLARRSADE 127
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G ++ VV+ +KD QI+ + LL
Sbjct: 128 GARVTVVTGDKDLLQIVGERIGLL 151
>gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter oleivorans DR1]
gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter oleivorans DR1]
Length = 923
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVLE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1]
gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1]
Length = 932
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L IKAM + +I VPGVEADDVIG LA ++
Sbjct: 68 TFRDNMYPEYKANRPPMPDDLRCQIEPLHNVIKAMGLPLICVPGVEADDVIGTLAHQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 AGMPVLISTGDKDMAQLVDDNVTLI 152
>gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024]
gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024]
Length = 923
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVLE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|384136328|ref|YP_005519042.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339290414|gb|AEJ44524.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 884
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 48/72 (66%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + +YK R TPD +VQ + +++A+SI +IE+ EADDVIG LA R+ +
Sbjct: 66 FRHADFAAYKGTRQETPDELVQQFPLARRTLEALSIPMIEIDQYEADDVIGTLAKRAAEA 125
Query: 63 GFKIQVVSPNKD 74
GF ++VVS +KD
Sbjct: 126 GFDVRVVSGDKD 137
>gi|427424253|ref|ZP_18914387.1| DNA-directed DNA polymerase [Acinetobacter baumannii WC-136]
gi|425698993|gb|EKU68615.1| DNA-directed DNA polymerase [Acinetobacter baumannii WC-136]
Length = 923
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG LA R+V +
Sbjct: 64 FRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRAVLE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|407698276|ref|YP_006823063.1| DNA polymerase I [Alteromonas macleodii str. 'Black Sea 11']
gi|407247423|gb|AFT76608.1| DNA polymerase I [Alteromonas macleodii str. 'Black Sea 11']
Length = 929
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK NRPP PD + ++ L A IKAM + VI PGVEADDVIG LA + +
Sbjct: 69 FRDDIYKEYKANRPPMPDELRSQIEPLHAIIKAMGLPVIVEPGVEADDVIGTLAKHATEK 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + +KD +Q+++ + L+
Sbjct: 129 GIDTLISTGDKDMAQLVNEHVTLI 152
>gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB]
gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB]
Length = 901
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH Y YK R TP+ ++ + Y+K I+ SI ++E G EADD+IG LA R
Sbjct: 74 TFRHETYAQYKATRKATPEALIPQIPYIKDIIRGFSIPILEQQGTEADDIIGTLACRFAG 133
Query: 62 DGFKIQVVSPNKDS-QILSHSLCLL 85
+G K+ +VS +KD Q+LS + ++
Sbjct: 134 EGLKVIIVSGDKDMLQLLSPDVIMI 158
>gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
Length = 932
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGTLASQASK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 AGMPVLISTGDKDMAQLVDDNVTLI 152
>gi|392390036|ref|YP_006426639.1| DNA polymerase I [Ornithobacterium rhinotracheale DSM 15997]
gi|390521114|gb|AFL96845.1| DNA polymerase I [Ornithobacterium rhinotracheale DSM 15997]
Length = 931
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
RH +P YK R TP+ + + Y++ ++AM I V+ G EADDVIG LA ++ D
Sbjct: 72 LRHEYFPDYKATRDETPEGIKVAVPYIQEILRAMKIPVLYAEGYEADDVIGTLAKKAEKD 131
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
GF +++P+KD +Q++S + + + A RG
Sbjct: 132 GFTTFMMTPDKDFAQLVSEHIKMYKPASRG 161
>gi|417951299|ref|ZP_12594406.1| DNA polymerase I [Vibrio splendidus ATCC 33789]
gi|342805251|gb|EGU40529.1| DNA polymerase I [Vibrio splendidus ATCC 33789]
Length = 932
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGTLASQASK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 AGMPVLISTGDKDMAQLVDDNVTLI 152
>gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
Length = 929
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 SGMPVLISTGDKDMAQLVDDNITLI 152
>gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
Length = 948
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
+R+ +Y YK +R TP+ + + Y++ +KAM I +IEV G EADD+IG LA ++ +
Sbjct: 68 YRYEMYQEYKAHRDETPEAIKIAVPYIQDLLKAMHIPIIEVAGFEADDLIGTLAKQAEKE 127
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRGFEL 94
FK+ +V+P+KD +Q++S ++ + + A G ++
Sbjct: 128 DFKVYMVTPDKDFAQLVSENIFMYKPARMGNDI 160
>gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
Length = 956
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R +Y YK NR TPD + + Y+++ +KAM + IE+ GVEADD+IG L+ ++ +G
Sbjct: 75 RVEMYEDYKANRDETPDAIKIAVPYIQSILKAMHVPCIEIEGVEADDLIGTLSKQAEKEG 134
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+++ +V+P+KD +Q++S ++ + + A G
Sbjct: 135 YQVFMVTPDKDYAQLVSENIFMYKPARMG 163
>gi|350570591|ref|ZP_08938943.1| DNA-directed DNA polymerase I [Neisseria wadsworthii 9715]
gi|349795793|gb|EGZ49587.1| DNA-directed DNA polymerase I [Neisseria wadsworthii 9715]
Length = 928
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK RPP PD + + L ++ M V+ VP VEADDVIG LA + +
Sbjct: 65 NFRHKMYPDYKATRPPMPDELRPQAEMLPEMVRLMGWPVLIVPDVEADDVIGTLAKQGEE 124
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + + + +KD +Q++S + L+
Sbjct: 125 AGWNVVISTGDKDMAQLVSEHVTLV 149
>gi|410634866|ref|ZP_11345493.1| DNA polymerase I [Glaciecola lipolytica E3]
gi|410145610|dbj|GAC12698.1| DNA polymerase I [Glaciecola lipolytica E3]
Length = 926
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK NRPP PD + + L A IKAM + +I GVEADDVIG LA ++ D
Sbjct: 69 FRDDIYPEYKANRPPMPDELRSQIAPLHAIIKAMGLPLIVEEGVEADDVIGTLAQQATDQ 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + +KD +Q+++ + L+
Sbjct: 129 GIPTLISTGDKDMAQLVNQHVTLI 152
>gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
Length = 931
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I VPGVEADDVIG LA ++
Sbjct: 68 TFRDEMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAYQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 AGMPVLISTGDKDMAQLVDDNVTLI 152
>gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116]
gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116]
Length = 930
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 69 FRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQASQQ 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 129 GMPVLISTGDKDMAQLVDDNVTLI 152
>gi|422349819|ref|ZP_16430708.1| DNA polymerase I [Sutterella wadsworthensis 2_1_59BFAA]
gi|404658028|gb|EKB30908.1| DNA polymerase I [Sutterella wadsworthensis 2_1_59BFAA]
Length = 947
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++P YK+NRPP PD + ++ L +K + V+ VPGVEADDVI +A ++
Sbjct: 63 NFRHEMFPEYKSNRPPMPDDLRVQIEPLHGILKDLGWPVVSVPGVEADDVIATIAEKARA 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G K + + +KD +Q++ + L+
Sbjct: 123 AGMKSIIATGDKDMAQLVDDDIVLI 147
>gi|444424781|ref|ZP_21220233.1| DNA polymerase I [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444241904|gb|ELU53422.1| DNA polymerase I [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 930
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 QGMPVLISTGDKDMAQLVDDNVTLI 152
>gi|424035698|ref|ZP_17774881.1| DNA polymerase I [Vibrio cholerae HENC-02]
gi|408897485|gb|EKM33248.1| DNA polymerase I [Vibrio cholerae HENC-02]
Length = 930
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 QGMPVLISTGDKDMAQLVDDNVTLI 152
>gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01]
gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01]
Length = 930
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 QGMPVLISTGDKDMAQLVDDNVTLI 152
>gi|424034473|ref|ZP_17773878.1| DNA polymerase I [Vibrio cholerae HENC-01]
gi|408873076|gb|EKM12283.1| DNA polymerase I [Vibrio cholerae HENC-01]
Length = 930
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 69 FRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQASQQ 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 129 GMPVLISTGDKDMAQLVDDNVTLI 152
>gi|388602773|ref|ZP_10161169.1| DNA polymerase I [Vibrio campbellii DS40M4]
Length = 930
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 QGMPVLISTGDKDMAQLVDDNVTLI 152
>gi|258512307|ref|YP_003185741.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257479033|gb|ACV59352.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 895
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 48/72 (66%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + +YK R TPD +VQ + +++A+SI ++E+ EADDVIG LA R+ +
Sbjct: 77 FRHADFAAYKGTRQETPDELVQQFPLARRTLEALSIPMVEIDQYEADDVIGTLAKRAAEA 136
Query: 63 GFKIQVVSPNKD 74
GF ++VVS +KD
Sbjct: 137 GFDVRVVSGDKD 148
>gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Coleofasciculus chthonoplastes PCC
7420]
gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Coleofasciculus chthonoplastes PCC
7420]
Length = 984
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 50/73 (68%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +YK +RP TP+ + LQ LK + A+++ V+ VPG EADDV+ LA R+ D
Sbjct: 88 TFRHKADDTYKADRPETPEDFIPDLQNLKELLTALNLPVLAVPGYEADDVLATLAHRATD 147
Query: 62 DGFKIQVVSPNKD 74
+G+++++++ ++D
Sbjct: 148 EGYQVKILTGDRD 160
>gi|424048318|ref|ZP_17785872.1| DNA polymerase I [Vibrio cholerae HENC-03]
gi|408882953|gb|EKM21748.1| DNA polymerase I [Vibrio cholerae HENC-03]
Length = 930
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 QGMPVLISTGDKDMAQLVDDNVTLI 152
>gi|350529887|ref|ZP_08908828.1| DNA polymerase I [Vibrio rotiferianus DAT722]
Length = 930
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 QGMPVLISTGDKDMAQLVDDNVTLI 152
>gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3]
gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3]
Length = 930
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 QGMPVLISTGDKDMAQLVDDNVTLI 152
>gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4]
gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4]
Length = 930
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 QGMPVLISTGDKDMAQLVDDNVTLI 152
>gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
Length = 931
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK NRPP PD + ++ L I+AM + +I VPGVEADDVIG LA ++
Sbjct: 69 FRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAYQASQA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 129 GMPVLISTGDKDMAQLVDDNVTLI 152
>gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
43184]
gi|423723105|ref|ZP_17697258.1| DNA polymerase I [Parabacteroides merdae CL09T00C40]
gi|154085961|gb|EDN85006.1| DNA-directed DNA polymerase [Parabacteroides merdae ATCC 43184]
gi|409241530|gb|EKN34298.1| DNA polymerase I [Parabacteroides merdae CL09T00C40]
Length = 940
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH Y YK R TP+ + + + ++K I+A +I ++EVP EADDVIG +A ++
Sbjct: 64 TFRHEAYEQYKAQRQETPEDIRKSVPFIKDIIEAYNIPILEVPRYEADDVIGTVAKQAEK 123
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLR 86
+GF++ +++P+KD Q++S + + R
Sbjct: 124 EGFEVYMMTPDKDYGQLVSEHIFMYR 149
>gi|365121705|ref|ZP_09338620.1| DNA polymerase I [Tannerella sp. 6_1_58FAA_CT1]
gi|363644992|gb|EHL84272.1| DNA polymerase I [Tannerella sp. 6_1_58FAA_CT1]
Length = 926
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + Q + +K IKA +I +IEVPG EADDVIG LA + +
Sbjct: 68 FRHEAYELYKAQREETPEVIRQSVPIIKEIIKAYNIPIIEVPGFEADDVIGTLAKLAEKE 127
Query: 63 GFKIQVVSPNKD 74
GF +++P+KD
Sbjct: 128 GFDTYMMTPDKD 139
>gi|424843386|ref|ZP_18268011.1| DNA polymerase I [Saprospira grandis DSM 2844]
gi|395321584|gb|EJF54505.1| DNA polymerase I [Saprospira grandis DSM 2844]
Length = 927
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 47/72 (65%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +Y YK NR P+ + + Y+K ++A +I V+ VP EADDVIG LA ++ +
Sbjct: 67 FRHEMYAPYKANREEQPEDIRLAIPYIKQIVEAFNIPVVAVPNYEADDVIGTLAKQAARE 126
Query: 63 GFKIQVVSPNKD 74
GF + +++P+KD
Sbjct: 127 GFDVYMMTPDKD 138
>gi|423346550|ref|ZP_17324238.1| DNA polymerase I [Parabacteroides merdae CL03T12C32]
gi|409219701|gb|EKN12661.1| DNA polymerase I [Parabacteroides merdae CL03T12C32]
Length = 940
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH Y YK R TP+ + + + ++K I+A +I ++EVP EADDVIG +A ++
Sbjct: 64 TFRHEAYEQYKAQRQETPEDIRKSVPFIKDIIEAYNIPILEVPRYEADDVIGTVAKQAEK 123
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLR 86
+GF++ +++P+KD Q++S + + R
Sbjct: 124 EGFEVYMMTPDKDYGQLVSEHIFMYR 149
>gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016]
gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016]
Length = 957
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L IKAM + +I + GVEADDVIG LA ++
Sbjct: 94 TFRDDMYPEYKANRPPMPDELRCQIEPLHQVIKAMGLPLIAIEGVEADDVIGTLAYQASQ 153
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 154 QGMPVLISTGDKDMAQLVDDNITLI 178
>gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
DSM 18315]
gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
DSM 18315]
Length = 940
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH Y YK R TP+ + + + ++K I+A +I ++EVP EADDVIG +A ++
Sbjct: 64 TFRHEAYEQYKAQRQETPEDIRKSVPFIKDIIEAYNIPILEVPRYEADDVIGTVAKQAEK 123
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLR 86
+GF++ +++P+KD Q++S + + R
Sbjct: 124 EGFEVYMMTPDKDYGQLVSEHIFMYR 149
>gi|423342500|ref|ZP_17320214.1| DNA polymerase I [Parabacteroides johnsonii CL02T12C29]
gi|409217417|gb|EKN10393.1| DNA polymerase I [Parabacteroides johnsonii CL02T12C29]
Length = 940
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH Y YK R TP+ + + + ++K I+A +I ++EVP EADDVIG +A ++
Sbjct: 64 TFRHEAYEQYKAQRQETPEDIRKSVPFIKDIIEAYNIPILEVPRYEADDVIGTVAKQAEK 123
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLR 86
+GF++ +++P+KD Q++S + + R
Sbjct: 124 EGFEVYMMTPDKDYGQLVSEHIFMYR 149
>gi|372222155|ref|ZP_09500576.1| DNA polymerase I [Mesoflavibacter zeaxanthinifaciens S86]
Length = 944
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R ++ YK NR TP+ + + Y+++ +KAM I V+E+ G EADD+IG L+ ++ +G
Sbjct: 70 RTEMFEEYKANRDETPEAIKIAVPYIQSILKAMKIPVVELEGYEADDLIGTLSKQAEKEG 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+K+ +V+P+KD Q++S ++ + R A G
Sbjct: 130 YKVFMVTPDKDFGQLVSENIFMYRPARMG 158
>gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
Length = 950
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH Y +YK NRP PD ++ L ++ IKA I ++ +PG EADD+IG A R +
Sbjct: 98 TFRHEKYEAYKANRPAPPDDLITQLADIRELIKAFGIPLVIMPGFEADDLIGT-AARKFE 156
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPR--GFELV 95
D ++ +V+P+KD SQ++ + LL+ + FELV
Sbjct: 157 DDCQVFIVTPDKDMSQLVHDGVRLLKPGKKQNEFELV 193
>gi|153853271|ref|ZP_01994680.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814]
gi|149754057|gb|EDM63988.1| DNA-directed DNA polymerase [Dorea longicatena DSM 13814]
Length = 871
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y YK R P D + Q + +K ++AM +K IE G+EADD+IG L+ R +
Sbjct: 64 TFRHKMYAEYKGTRKPMADELRQQVPVIKEVLRAMRVKTIECAGLEADDLIGTLSNRCEN 123
Query: 62 DGFKIQVVSPNKDSQILSHSLCLLRI 87
+G ++ V+S ++D L+ +RI
Sbjct: 124 EGMEVTVISGDRDLLQLATEHVKIRI 149
>gi|349574759|ref|ZP_08886693.1| DNA-directed DNA polymerase I [Neisseria shayeganii 871]
gi|348013633|gb|EGY52543.1| DNA-directed DNA polymerase I [Neisseria shayeganii 871]
Length = 941
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK RPP PD + + L ++ M V+ VP VEADDVIG LA + +
Sbjct: 66 NFRHKMYPDYKATRPPMPDELRPQAEMLPELVRLMGWPVLIVPDVEADDVIGTLAKQGEE 125
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + + + +KD +Q++S + L+
Sbjct: 126 AGWNVVISTGDKDMAQLVSEHVTLV 150
>gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6]
gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6]
Length = 931
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK NRPP PD + ++ L IKAM + +I + GVEADDVIG LA ++
Sbjct: 69 FRDDMYPEYKANRPPMPDDLRCQIEPLHQVIKAMGLPLIAIEGVEADDVIGTLAYQASQQ 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 129 GMPVLISTGDKDMAQLVDDNITLI 152
>gi|441506550|ref|ZP_20988518.1| DNA polymerase I [Photobacterium sp. AK15]
gi|441425756|gb|ELR63250.1| DNA polymerase I [Photobacterium sp. AK15]
Length = 923
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK +RPP PD + ++ L A IKAM + +I V GVEADDVIG LA ++
Sbjct: 68 TFRDEIYPEYKAHRPPMPDDLRGQIEPLHAVIKAMGLPLISVSGVEADDVIGTLATQASK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 AGMPVLISTGDKDMAQLVDPNVTLI 152
>gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
Length = 931
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK NRPP PD + ++ L IKAM + +I + GVEADDVIG LA ++
Sbjct: 69 FRDDMYPEYKANRPPMPDDLRCQIEPLHQVIKAMGLPLIAIEGVEADDVIGTLAYQASQQ 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 129 GMPVLISTGDKDMAQLVDDNITLI 152
>gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
Length = 931
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 AGMPVLISTGDKDMAQLVDDNITLI 152
>gi|163814036|ref|ZP_02205428.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
gi|158450485|gb|EDP27480.1| DNA-directed DNA polymerase [Coprococcus eutactus ATCC 27759]
Length = 886
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +Y YK R P PD + + + +K + AM+I +IE G EADD+IG L+ + D
Sbjct: 73 FRHLMYKEYKGTRKPMPDELREQVPLIKEVLTAMNITIIEKGGYEADDIIGTLSRIADKD 132
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRI 87
G+K+ +VS ++D L+ L+RI
Sbjct: 133 GYKVVIVSGDRDLLQLATDNILVRI 157
>gi|404487040|ref|ZP_11022227.1| DNA polymerase I [Barnesiella intestinihominis YIT 11860]
gi|404335536|gb|EJZ62005.1| DNA polymerase I [Barnesiella intestinihominis YIT 11860]
Length = 926
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A +I +IEVPG EADDVIG LA + +
Sbjct: 68 FRHEAYEQYKAQREETPEVIRYSVPIIKEIIQAYNIPIIEVPGFEADDVIGSLAKLAEKE 127
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLR 86
GF +++P+KD Q++S + + R
Sbjct: 128 GFDTYMMTPDKDYGQLVSSHIFMYR 152
>gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
gi|225204183|gb|EEG86537.1| DNA-directed DNA polymerase [Proteus penneri ATCC 35198]
Length = 949
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK+NRPP PD + + + L ++AM + ++ + GVEADDVIG LA+++ D
Sbjct: 86 FRDELYEEYKSNRPPMPDDLREQIAPLHEMVQAMGLPLLSISGVEADDVIGTLALKAAAD 145
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 146 GRDVLISTGDKDMAQLVTPKITLI 169
>gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
Length = 934
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ +YP YK NRPP PD + ++ L IKAM + +I + GVEADDVIG LA ++
Sbjct: 69 FRNDMYPEYKANRPPMPDELRCQIEPLHKLIKAMGLPLISISGVEADDVIGTLASQASKA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 129 GIPVLISTGDKDMAQLVDENVTLI 152
>gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118]
gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118]
Length = 957
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR LYP YK +R P PD + ++ + ++ M KV+ VPGVEADDVIG LAV +
Sbjct: 78 TFRDALYPEYKAHRSPMPDDLRSQIEPIHEVVRLMGWKVLAVPGVEADDVIGTLAVTAAR 137
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G ++ V S +KD +Q+++ + ++
Sbjct: 138 QGIEVIVSSGDKDLAQLVNSHITII 162
>gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73]
gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans GPE PC73]
Length = 922
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP YK NRPP PD + ++ + + A+ I ++ GVEADDVIG LA++ V D
Sbjct: 63 FRDALYPQYKANRPPMPDELRAQVEPMCQIVHALGITILRESGVEADDVIGTLALQGVGD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GMDVTISTGDKD 134
>gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222]
gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222]
Length = 933
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGTLASQASA 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 MGMPVLISTGDKDMAQLVDDNVTLI 152
>gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32]
gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32]
Length = 933
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGTLASQASA 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 MGMPVLISTGDKDMAQLVDDNVTLI 152
>gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|417955025|ref|ZP_12598051.1| DNA polymerase I [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342814073|gb|EGU49025.1| DNA polymerase I [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 931
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 69 FRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQASQA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 129 GMPVLISTGDKDMAQLVDDNVTLI 152
>gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01]
gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01]
Length = 937
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGTLASQASA 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 MGMPVLISTGDKDMAQLVDDNVTLI 152
>gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
Length = 937
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y +YK R TP+ ++ +K ++A+ I IEVP EADDV+G L+ R+
Sbjct: 71 SFRHREYTAYKAQRDATPEGILWAFPQVKRLLEALRIPAIEVPDYEADDVVGTLSQRAEK 130
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFEL 94
+GF++ +V+ +KD Q+++ + R +G E+
Sbjct: 131 EGFEVYMVTADKDYGQLVTEHALMYRPGTKGAEV 164
>gi|332665102|ref|YP_004447890.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
gi|332333916|gb|AEE51017.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
Length = 935
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y YK NR P + + ++K I+AM I ++ V G EADDVIG LA ++
Sbjct: 67 TFRHDMYEPYKANREEQPQDISIAIPWIKKIIEAMHIPIVMVQGYEADDVIGTLAKQAEK 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+G+ + +V+P+KD Q++S ++ + + + +G
Sbjct: 127 EGYTVYMVTPDKDYGQLVSENIFMYKPSRQG 157
>gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205]
gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205]
Length = 921
Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + + + YL A IKA+ I + +PG EADD+IG L R++ +
Sbjct: 64 FRHKLSPIYKGDRPSMPEELSEQIPYLHALIKALGIPLYSLPGAEADDIIGTLTKRALSE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069]
gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069]
Length = 915
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR+ LYP YK NRPP P+ + Q ++ + +KAM + ++ + GVEADDVIG LA ++
Sbjct: 69 TFRNDLYPEYKANRPPMPEDLRQQIEPIHEIVKAMGLPLLVIDGVEADDVIGTLAKQACK 128
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G + + + +KD +Q++S + L+
Sbjct: 129 EGRETLISTGDKDMAQLVSDHVTLI 153
>gi|374598916|ref|ZP_09671918.1| DNA polymerase I [Myroides odoratus DSM 2801]
gi|423322892|ref|ZP_17300734.1| DNA polymerase I [Myroides odoratimimus CIP 103059]
gi|373910386|gb|EHQ42235.1| DNA polymerase I [Myroides odoratus DSM 2801]
gi|404610119|gb|EKB09475.1| DNA polymerase I [Myroides odoratimimus CIP 103059]
Length = 935
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R ++P YK NR TP+ + + Y+K +KAM I +IEV G EADD+IG ++ ++ +
Sbjct: 70 RLAIFPEYKANRDVTPEAIKIAVPYIKEILKAMHIPIIEVSGFEADDLIGTISKQAEKED 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
F + +V+P+KD +Q++S ++ + R A G
Sbjct: 130 FMVYMVTPDKDYAQLVSDNIVMYRPARMG 158
>gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
Length = 940
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R ++ YK NR TP+ + + Y++ +KAM I VIE G EADD+IG LA ++ +
Sbjct: 70 RTAMFTDYKANRDETPEAIRIAVPYIQEILKAMHIPVIEKAGFEADDIIGTLAKQAEKED 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
FK+ +V+P+KD +Q++S ++ + R A G
Sbjct: 130 FKVFMVTPDKDFAQLVSENIFMYRPARMG 158
>gi|303285890|ref|XP_003062235.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456646|gb|EEH53947.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 565
Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 47/70 (67%)
Query: 5 HTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGF 64
H ++ YK NRPPTP + + + + +++ M + V+ + GVEADD+IG +A RSV+ G
Sbjct: 246 HEMFTDYKANRPPTPPELKEQIPKVVEAVRRMGVPVLTISGVEADDIIGTIARRSVEAGL 305
Query: 65 KIQVVSPNKD 74
+ +VSP+KD
Sbjct: 306 HVTIVSPDKD 315
>gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
Length = 923
Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ +Y YK +RPP PD + + L IKA+ I +I +PGVEADDVIG +A+++ ++
Sbjct: 69 FRNEMYQEYKAHRPPMPDDLRSQIAPLHRIIKALGIPLISIPGVEADDVIGTIAIQAGNE 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GRSVLISTGDKDMAQLVNEHITLI 152
>gi|407069591|ref|ZP_11100429.1| DNA polymerase I [Vibrio cyclitrophicus ZF14]
Length = 937
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I +PGVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGTLASQASA 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 LGMPVLISTGDKDMAQLVDDNVTLI 152
>gi|358450341|ref|ZP_09160805.1| DNA polymerase I [Marinobacter manganoxydans MnI7-9]
gi|357225459|gb|EHJ03960.1| DNA polymerase I [Marinobacter manganoxydans MnI7-9]
Length = 910
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH LY YK NRPP P+ + ++ + +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRHDLYEEYKANRPPMPEDLACQIEPIHEIVKAMGLPLLTVTGVEADDVIGTLANEATS 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q++S + L+
Sbjct: 128 KGIDVVVSTGDKDMAQLVSDHVTLI 152
>gi|344203156|ref|YP_004788299.1| DNA polymerase I [Muricauda ruestringensis DSM 13258]
gi|343955078|gb|AEM70877.1| DNA polymerase I [Muricauda ruestringensis DSM 13258]
Length = 944
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R L+ +YK NR TPD + + Y++ ++AM I V+E+ G EADD+IG LA ++ +
Sbjct: 70 RTELFEAYKANRDETPDAIRIAVPYIQQILEAMKIPVVELEGYEADDLIGTLAKQAEKEN 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+K+ +V+P+KD Q++S ++ + R A G
Sbjct: 130 YKVFMVTPDKDFGQLVSENIFMYRPARMG 158
>gi|385330034|ref|YP_005883985.1| LOW QUALITY PROTEIN: DNA polymerase I [Marinobacter adhaerens HP15]
gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [Marinobacter adhaerens HP15]
Length = 868
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH LY YK NRPP P+ + ++ + +KAM + ++ V GVEADDVIG LA +
Sbjct: 27 TFRHDLYEEYKANRPPMPEDLACQIEPIHEIVKAMGLPLLTVTGVEADDVIGTLANEATS 86
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q++S + L+
Sbjct: 87 KGIDVVVSTGDKDMAQLVSDHVTLI 111
>gi|378824230|ref|ZP_09846756.1| 5'-3' exonuclease, SAM domain protein, partial [Sutterella
parvirubra YIT 11816]
gi|378596944|gb|EHY30306.1| 5'-3' exonuclease, SAM domain protein, partial [Sutterella
parvirubra YIT 11816]
Length = 317
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRPP PD + + L ++A+ ++ +PGVEADDVI LA +
Sbjct: 63 NFRHEMYPEYKANRPPMPDDLRVQIAPLHGVLEALGWPLLIIPGVEADDVIASLAEVAKR 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
DG + + + +KD +Q++ + LL
Sbjct: 123 DGHDVVIATGDKDMAQLVEDRVILL 147
>gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT]
gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT]
Length = 903
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH ++ YK RPP PD +V L ++ + A ++ V E G EADDV+G LA R+
Sbjct: 66 TFRHEMFKDYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLATRAAA 125
Query: 62 DGFKIQVVSPNKDS-QILSHSLCLLRIAPRG 91
+G ++ + S + DS Q++S + +L P G
Sbjct: 126 EGMEVIIASGDADSMQLVSPDIRILYPGPAG 156
>gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822]
gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822]
Length = 966
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 51/73 (69%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH LYP+YK +R TP+ + L+ LK + A++++++ V G EADD++G LA ++
Sbjct: 73 SFRHLLYPNYKGDRKETPEEFIPDLENLKRLLNALNLQMVTVAGYEADDILGTLAEKAAS 132
Query: 62 DGFKIQVVSPNKD 74
+++++V+ ++D
Sbjct: 133 SNYRVKIVTGDRD 145
>gi|452204056|ref|YP_007484189.1| DNA polymerase I [Dehalococcoides mccartyi DCMB5]
gi|452111115|gb|AGG06847.1| DNA polymerase I [Dehalococcoides mccartyi DCMB5]
Length = 903
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH ++ YK RPP PD +V L ++ + A ++ V E G EADDV+G LA R+
Sbjct: 66 TFRHEMFKDYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLATRAAA 125
Query: 62 DGFKIQVVSPNKDS-QILSHSLCLLRIAPRG 91
+G ++ + S + DS Q++S + +L P G
Sbjct: 126 EGMEVIIASGDADSMQLVSPDIRILYPGPAG 156
>gi|403745853|ref|ZP_10954601.1| DNA polymerase I [Alicyclobacillus hesperidum URH17-3-68]
gi|403121197|gb|EJY55521.1| DNA polymerase I [Alicyclobacillus hesperidum URH17-3-68]
Length = 882
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH Y YK R TPD +VQ + +++A+SI V+E+ EADD+IG L+ R+ +
Sbjct: 66 TFRHAEYAEYKGTRQQTPDDLVQQFPLARQTLEALSIPVVELQNYEADDLIGTLSKRAEE 125
Query: 62 DGFKIQVVSPNKD 74
G+ +++VS +KD
Sbjct: 126 AGWDVKIVSGDKD 138
>gi|402758505|ref|ZP_10860761.1| DNA polymerase I [Acinetobacter sp. NCTC 7422]
Length = 921
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA I + +PG EADD+IG L R++ +
Sbjct: 64 FRHKLSPIYKGDRPSMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLTKRALAE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|53803295|ref|YP_114980.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
gi|53757056|gb|AAU91347.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
Length = 906
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 49/73 (67%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFR L+ YK +RPP PD + ++ L ++AM + ++ PGVEADDVIG LA ++V+
Sbjct: 69 NFRDELFEHYKAHRPPMPDDLRSQIEPLHQVVRAMGLPMLIEPGVEADDVIGTLARQAVE 128
Query: 62 DGFKIQVVSPNKD 74
GF++ + + +KD
Sbjct: 129 RGFRVVISTGDKD 141
>gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
gi|452205555|ref|YP_007485684.1| DNA polymerase I [Dehalococcoides mccartyi BTF08]
gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
gi|452112611|gb|AGG08342.1| DNA polymerase I [Dehalococcoides mccartyi BTF08]
Length = 903
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH ++ YK RPP PD +V L ++ + A ++ V E G EADDV+G LA R+
Sbjct: 66 TFRHEMFKDYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLATRAAA 125
Query: 62 DGFKIQVVSPNKDS-QILSHSLCLLRIAPRG 91
+G ++ + S + DS Q++S + +L P G
Sbjct: 126 EGMEVIIASGDADSMQLVSPDIRILYPGPAG 156
>gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1]
gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1]
Length = 903
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH ++ YK RPP PD +V L ++ + A ++ V E G EADDV+G LA R+
Sbjct: 66 TFRHEMFKDYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLATRAAA 125
Query: 62 DGFKIQVVSPNKDS-QILSHSLCLLRIAPRG 91
+G ++ + S + DS Q++S + +L P G
Sbjct: 126 EGMEVIIASGDADSMQLVSPDIRILYPGPAG 156
>gi|429725874|ref|ZP_19260688.1| DNA-directed DNA polymerase [Prevotella sp. oral taxon 473 str.
F0040]
gi|429148466|gb|EKX91471.1| DNA-directed DNA polymerase [Prevotella sp. oral taxon 473 str.
F0040]
Length = 926
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +P YK R TP+ + + +K + A I ++EVP EADDVIG LA R+ +
Sbjct: 66 FRHEQFPEYKATRDETPEDIRWAVPVIKDFLTAYGITMVEVPNYEADDVIGTLAHRAAKE 125
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLR--IAPRGFE 93
G ++ +V+P+KD +Q++ + +LR +G+E
Sbjct: 126 GLEVVMVTPDKDYAQLVQPGVSMLRPQSGAKGYE 159
>gi|407786617|ref|ZP_11133762.1| DNA polymerase I [Celeribacter baekdonensis B30]
gi|407201338|gb|EKE71339.1| DNA polymerase I [Celeribacter baekdonensis B30]
Length = 935
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 48/73 (65%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR+ L+P+YK NRPP P+ +V + + +A ++ IE+ G EADD+IG L+ ++ +
Sbjct: 73 TFRNDLFPAYKANRPPAPEELVPQFPLTREATRAFNVSCIEIEGFEADDIIGTLSCQARE 132
Query: 62 DGFKIQVVSPNKD 74
G ++ ++S +KD
Sbjct: 133 AGGRVTIISSDKD 145
>gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO]
gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO]
Length = 892
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
+RH L YK +RP TPD M+Q L Y+K ++A+ IKV+E G EADDVI LA +
Sbjct: 67 YRHELLEEYKAHRPQTPDAMIQQLPYIKRGVQALGIKVLEYEGCEADDVIATLARMGEKE 126
Query: 63 GFKIQVVSPNKD 74
I ++S +KD
Sbjct: 127 FEDIFIISGDKD 138
>gi|365959716|ref|YP_004941283.1| DNA polymerase I [Flavobacterium columnare ATCC 49512]
gi|365736397|gb|AEW85490.1| DNA polymerase I [Flavobacterium columnare ATCC 49512]
Length = 944
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
N+R ++ YK NR TP+ + + Y++ + AM I +IE+ G EADD+IG LA ++
Sbjct: 68 NYRLEMFTEYKANRDETPEAIKIAIPYIQEILNAMHIPIIEIAGYEADDLIGTLAKKAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFEL 94
G+ + +V+P+KD Q++S ++ + R A G ++
Sbjct: 128 QGYLVYMVTPDKDFGQLVSENIFMYRPARAGNDI 161
>gi|223999787|ref|XP_002289566.1| hypothetical protein THAPSDRAFT_262348 [Thalassiosira pseudonana
CCMP1335]
gi|220974774|gb|EED93103.1| hypothetical protein THAPSDRAFT_262348 [Thalassiosira pseudonana
CCMP1335]
Length = 249
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NR P P+ +V + ++ + +A I +E G EADDVI LA ++++
Sbjct: 64 NFRHEIYPEYKANRGPCPEDLVPQFELVREAAEAFGIVQVEAEGYEADDVIATLARQALE 123
Query: 62 DGFKIQVVSPNKD 74
+G + ++S +KD
Sbjct: 124 EGVDVDILSGDKD 136
>gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
str. OVINE]
Length = 952
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ L+ YK++RPP PD + ++ L IKA+ I +I + GVEADDVIG LAV++ D
Sbjct: 69 FRYELFKQYKSHRPPMPDDLRPQIEPLHRIIKALGIPLISIEGVEADDVIGTLAVQAAKD 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKDVLISTGDKDMAQLVNDHIMLI 152
>gi|260060686|ref|YP_003193766.1| DNA polymerase I [Robiginitalea biformata HTCC2501]
gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
Length = 942
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R L+P YK NR TPD + + +++ +KAM I IE G+EADD+IG LA ++ G
Sbjct: 70 RTELFPEYKANRDETPDAIRVAVPWIQDILKAMHIPCIERSGLEADDIIGTLARQAEAQG 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+++ +V+P+KD Q+++ + + R A G
Sbjct: 130 YQVYMVTPDKDFGQLVTENTFMYRPARMG 158
>gi|373501409|ref|ZP_09591766.1| hypothetical protein HMPREF9140_01884 [Prevotella micans F0438]
gi|371949065|gb|EHO66939.1| hypothetical protein HMPREF9140_01884 [Prevotella micans F0438]
Length = 920
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 61/97 (62%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +P YK R TP+ + + + +K ++AM + V++V G EADDVIG LAV+ ++
Sbjct: 65 FRHERFPDYKAQREETPEDIKRSVPIIKEILEAMHVPVLQVDGFEADDVIGTLAVKFSNE 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ ++ + R PR G+E++
Sbjct: 125 GIATYMLTPDKDYGQLVRENVYMFR--PRHGGGYEML 159
>gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4]
gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4]
Length = 949
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH Y YK R TP+ + + +K IKA +I +E+PG EADDVIG +A ++
Sbjct: 65 TFRHEAYEQYKAQREATPEDIRLAVPIIKNLIKAYNIPALEIPGYEADDVIGTMAKKAEQ 124
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFE 93
GF++ +++P+KD Q++S + + R P+ GFE
Sbjct: 125 AGFEVFMLTPDKDYGQLVSDHIFMYR--PKHTGGFE 158
>gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9]
gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9]
Length = 932
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 48/72 (66%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP+YK +RPP PD + Q + + A+++A+ ++ V GVEADDVIG LA +
Sbjct: 64 FRDDLYPAYKAHRPPMPDDLRQQIAPVHAAVRALGWPLLMVDGVEADDVIGTLAKNAAAA 123
Query: 63 GFKIQVVSPNKD 74
GF++ + + +KD
Sbjct: 124 GFQVVISTGDKD 135
>gi|425744199|ref|ZP_18862259.1| DNA-directed DNA polymerase [Acinetobacter baumannii WC-323]
gi|425491587|gb|EKU57868.1| DNA-directed DNA polymerase [Acinetobacter baumannii WC-323]
Length = 921
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A I+A I + +PG EADD+IG L R++ +
Sbjct: 64 FRHKLSPIYKGDRPSMPEELSQQIPYLHALIRAQGIPLYSLPGAEADDIIGTLTKRALSE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
[Pelotomaculum thermopropionicum SI]
Length = 882
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FRH + YK +RP TPD + LK +KAM I+V E G EADD+IG L+ R+
Sbjct: 64 ITFRHDDFEKYKAHRPATPDDLRPQFPVLKEVLKAMRIQVFEAEGYEADDLIGTLSARAE 123
Query: 61 DDGFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
G + +V+ ++D+ L L +R+ +G
Sbjct: 124 QAGLRTIIVTGDRDALQLVSPLTSVRLVKKG 154
>gi|421854921|ref|ZP_16287304.1| DNA polymerase I [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
gi|403189582|dbj|GAB73505.1| DNA polymerase I [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
Length = 919
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L P YK +RP P + Q + YL A I+A+ I + +PG EADD+IG LA R+
Sbjct: 63 TFRHELSPLYKGDRPSMPSELSQQIPYLHALIRALGIPLYSLPGAEADDIIGTLAKRAEA 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
G ++ + + +KD +Q+++ + L
Sbjct: 123 AGHQVLISTGDKDMAQLVTDKVTL 146
>gi|421464698|ref|ZP_15913388.1| DNA-directed DNA polymerase [Acinetobacter radioresistens WC-A-157]
gi|400205451|gb|EJO36432.1| DNA-directed DNA polymerase [Acinetobacter radioresistens WC-A-157]
Length = 919
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L P YK +RP P + Q + YL A I+A+ I + +PG EADD+IG LA R+
Sbjct: 63 TFRHELSPLYKGDRPSMPSELSQQIPYLHALIRALGIPLYSLPGAEADDIIGTLAKRAEA 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
G ++ + + +KD +Q+++ + L
Sbjct: 123 AGHQVLISTGDKDMAQLVTDKVTL 146
>gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82]
gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164]
gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82]
gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164]
Length = 919
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L P YK +RP P + Q + YL A I+A+ I + +PG EADD+IG LA R+
Sbjct: 63 TFRHELSPLYKGDRPSMPSELSQQIPYLHALIRALGIPLYSLPGAEADDIIGTLAKRAEA 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
G ++ + + +KD +Q+++ + L
Sbjct: 123 AGHQVLISTGDKDMAQLVTDKVTL 146
>gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180]
gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180]
Length = 911
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH YP YK NRP P+ + ++ L+ I+AM + ++ VPGVEADDVIG LA ++
Sbjct: 67 FRHDRYPDYKANRPAMPEDLRAQIEPLRTIIRAMGLPLLVVPGVEADDVIGTLATQAAAT 126
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL------RIAPRG 91
G + + +KD +Q++ + L+ R+ P G
Sbjct: 127 GLPTLISTGDKDLAQLVGEHVTLINTMTGTRLDPDG 162
>gi|225388911|ref|ZP_03758635.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme
DSM 15981]
gi|225045020|gb|EEG55266.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme
DSM 15981]
Length = 711
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 52/85 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +Y +YK R P P+ + + + +K + AM + ++ +PG EADD++G +A RS +
Sbjct: 64 FRHQMYEAYKGTRKPMPEELHEQVALMKEVLTAMGVPILTLPGYEADDILGTVAKRSQKE 123
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRI 87
G ++ VVS ++D L+ +RI
Sbjct: 124 GIQVSVVSGDRDLLQLADEHIKIRI 148
>gi|357403761|ref|YP_004915685.1| DNA polymerase I [Methylomicrobium alcaliphilum 20Z]
gi|351716426|emb|CCE22086.1| DNA polymerase I (POL I) [Methylomicrobium alcaliphilum 20Z]
Length = 907
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH LY YK +RPP PD + ++ L I+AM + +I P VEADDVIG A ++
Sbjct: 68 TFRHDLYDQYKAHRPPMPDDLRVQIEPLHRLIRAMGLPLIMQPDVEADDVIGAFAKQAER 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
DGF++ + + +KD +Q+++ + L
Sbjct: 128 DGFQVVISTGDKDMAQLVTEHITL 151
>gi|219815963|gb|ACL37083.1| DNA polymerase I [uncultured bacterium]
Length = 647
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L P YK +RP P+ + Q + YL A I+A+ I + +PG EADD+IG LA R+
Sbjct: 63 TFRHVLSPIYKGDRPSMPEELSQQIPYLHALIRALGIPLHTLPGAEADDIIGTLAKRAEK 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
G ++ + + +KD +Q+++ + L
Sbjct: 123 AGHQVLISTGDKDMAQLVTDKVTL 146
>gi|409195816|ref|ZP_11224479.1| DNA polymerase I [Marinilabilia salmonicolor JCM 21150]
Length = 924
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ L+ YK NR TP+ + + + Y+K ++A +I VI+V G EADDV+G L+ ++
Sbjct: 70 FRNELFKEYKANRDATPEDIKKAVPYIKQILEAFNISVIQVDGFEADDVVGTLSRKAGTA 129
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLR 86
GFK +V+P+KD +Q+++ + +
Sbjct: 130 GFKTFMVTPDKDYAQLVTADTVMYK 154
>gi|381150379|ref|ZP_09862248.1| DNA polymerase I [Methylomicrobium album BG8]
gi|380882351|gb|EIC28228.1| DNA polymerase I [Methylomicrobium album BG8]
Length = 901
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH LY YK +RPP PD + ++ L +KAM + +I G+EADDV+G LA ++
Sbjct: 66 NFRHDLYEHYKAHRPPMPDDLRCQIEPLHRMVKAMGLPLIIEAGIEADDVLGCLARKAEK 125
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
+GF I + + +KD +Q+++ + L
Sbjct: 126 EGFDIIISTGDKDMAQLVNEHISL 149
>gi|374596617|ref|ZP_09669621.1| DNA polymerase I [Gillisia limnaea DSM 15749]
gi|373871256|gb|EHQ03254.1| DNA polymerase I [Gillisia limnaea DSM 15749]
Length = 941
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R ++ YK NR TP+ ++ + Y++ +KAM I V+ +PG EADDVIG LA ++ +
Sbjct: 70 RTEMFEDYKANRDATPEPIMTAIPYIQDILKAMHIPVVVLPGCEADDVIGTLAKQAEKED 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+K+ +V+P+KD +Q+++ ++ + R A G
Sbjct: 130 YKVFMVTPDKDFAQLVTENIFMYRPARMG 158
>gi|365920203|ref|ZP_09444552.1| DNA-directed DNA polymerase [Cardiobacterium valvarum F0432]
gi|364578420|gb|EHM55625.1| DNA-directed DNA polymerase [Cardiobacterium valvarum F0432]
Length = 900
Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH LYP+YK +RPP PD + ++ L I+A+ +I GVEADDVIG LA++++
Sbjct: 70 FRHDLYPAYKAHRPPMPDDLRAQIEPLHRLIEALGFPLIIEDGVEADDVIGTLAMQALAR 129
Query: 63 GFKIQVVSPNKD-SQILSHS 81
+++ + S +KD +Q+L H+
Sbjct: 130 HYQVVISSGDKDMTQLLVHA 149
>gi|417956892|ref|ZP_12599826.1| DNA polymerase I [Neisseria weaveri ATCC 51223]
gi|343969638|gb|EGV37848.1| DNA polymerase I [Neisseria weaveri ATCC 51223]
Length = 907
Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK RPP PD + + L ++ M V+ VP VEADDVIG LA +
Sbjct: 44 NFRHKMYPDYKATRPPMPDELRPQAEMLPEMVRLMGWPVLIVPDVEADDVIGTLAKQGEA 103
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + + + +KD +Q++S + L+
Sbjct: 104 AGWNVVISTGDKDMAQLVSEHVTLV 128
>gi|319941599|ref|ZP_08015924.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
gi|319804901|gb|EFW01747.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
Length = 952
Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +YP+YK NRPP P+ + ++ L+ ++A+ ++ VPG+EADDVIG L+ +
Sbjct: 64 FRHEMYPAYKANRPPMPEELRTQIEPLQGIVRALGWPLLIVPGIEADDVIGSLSAMAARA 123
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G V + +KD +Q++ + LL
Sbjct: 124 GVDTVVATGDKDMAQLVDDHVVLL 147
>gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN]
gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN]
Length = 926
Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 45/72 (62%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR T+YP+YK R P PD + + + ++ + KV++VPGVEADDVIG LAV +
Sbjct: 71 FRDTIYPAYKQQRSPMPDDLRTQIAPIHEVVRLLGWKVLDVPGVEADDVIGTLAVVAARQ 130
Query: 63 GFKIQVVSPNKD 74
G + V S +KD
Sbjct: 131 GIDVIVSSGDKD 142
>gi|387891183|ref|YP_006321481.1| DNA polymerase I [Escherichia blattae DSM 4481]
gi|414594470|ref|ZP_11444106.1| DNA polymerase I [Escherichia blattae NBRC 105725]
gi|386926016|gb|AFJ48970.1| DNA polymerase I [Escherichia blattae DSM 4481]
gi|403194465|dbj|GAB81758.1| DNA polymerase I [Escherichia blattae NBRC 105725]
Length = 928
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ SYK+NRPP PD + ++ L A +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFESYKSNRPPMPDDLRVQIEPLHAMVKAMGLPLLVVPGVEADDVIGTLAREAER 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPGITLI 152
>gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter daltonii FRC-32]
gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter daltonii FRC-32]
Length = 891
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FR+ +YP+YK NR PD + ++ +K +++A I V+E+PG EADD+IG +A
Sbjct: 65 LTFRNEIYPAYKANRSAMPDDLRLQIEPIKEAVRAFRIPVLELPGFEADDIIGTIACDCE 124
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLL 85
G +V+ +KD QI++ S+ LL
Sbjct: 125 KKGMAAVIVTGDKDLMQIVTDSVTLL 150
>gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7]
gi|89517759|gb|EAS20415.1| DNA polymerase I [Flavobacteria bacterium BBFL7]
Length = 946
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R LY YK NR TP+ + + Y++ +KAM I ++E G+EADD+IG LA ++ +G
Sbjct: 74 RVELYADYKANRDETPEAIKIAVPYIQQILKAMHIPIVEEAGIEADDLIGTLAKQAEKEG 133
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
F +V+P+KD +Q++S ++ + + A G
Sbjct: 134 FTTYMVTPDKDYAQLVSDNIFMYKPARMG 162
>gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
Length = 919
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L IKA+ I +I + GVEADDVIG LAV++ +
Sbjct: 31 FRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQAANA 90
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 91 GKNVLISTGDKDMAQLVNDHIMLI 114
>gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
102761]
gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
102761]
Length = 923
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR ++ YK NRPP PD + ++ L A IKAM + +I + GVEADDVIG LA ++
Sbjct: 68 TFRDEMFADYKANRPPMPDDLRGQIEPLHAVIKAMGLPLISISGVEADDVIGTLATQASK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 AGMPVLISTGDKDMAQLVDENITLI 152
>gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
Length = 957
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L IKA+ I +I + GVEADDVIG LAV++ +
Sbjct: 69 FRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQAANA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKNVLISTGDKDMAQLVNDHIMLI 152
>gi|57238779|ref|YP_179915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
gi|58578703|ref|YP_196915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
gi|57160858|emb|CAH57760.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
gi|58417329|emb|CAI26533.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Welgevonden]
Length = 865
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVR-SV 60
NFRH +YP YK+NR P+ ++ L+ ++ A++I EV G EADDVI L+ S
Sbjct: 68 NFRHDIYPQYKSNRIKLPEDLISQFPLLREAVNALNISYEEVAGYEADDVIATLSKNYSK 127
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLL 85
DG K+ VV+ +KD Q+L H++ +
Sbjct: 128 FDGIKVTVVTSDKDLLQLLEHNIHIF 153
>gi|343500982|ref|ZP_08738867.1| DNA polymerase I [Vibrio tubiashii ATCC 19109]
gi|418478599|ref|ZP_13047698.1| DNA polymerase I [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342819561|gb|EGU54404.1| DNA polymerase I [Vibrio tubiashii ATCC 19109]
gi|384573754|gb|EIF04242.1| DNA polymerase I [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 930
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK NRPP PD + ++ L I+AM + +I PGVEADDVIG LA ++
Sbjct: 69 FRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICTPGVEADDVIGTLAYQASQA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 129 GMPVLISTGDKDMAQLVDDNVTLI 152
>gi|358410693|gb|AEU10079.1| DNA polymerase I [Photobacterium damselae subsp. piscicida]
Length = 923
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR ++ YK NRPP PD + ++ L A IKAM + +I + GVEADDVIG LA ++
Sbjct: 68 TFRDEMFADYKANRPPMPDDLRGQIEPLHAVIKAMGLPLISISGVEADDVIGTLATQASK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 AGMPVLISTGDKDMAQLVDENITLI 152
>gi|190149819|ref|YP_001968344.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 957
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L IKA+ I +I + GVEADDVIG LAV++ +
Sbjct: 69 FRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQAANA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKNVLISTGDKDMAQLVNDHIMLI 152
>gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 957
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L IKA+ I +I + GVEADDVIG LAV++ +
Sbjct: 69 FRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQAANA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKNVLISTGDKDMAQLVNDHIMLI 152
>gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 957
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L IKA+ I +I + GVEADDVIG LAV++ +
Sbjct: 69 FRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQAANA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKNVLISTGDKDMAQLVNDHIMLI 152
>gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 957
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L IKA+ I +I + GVEADDVIG LAV++ +
Sbjct: 69 FRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQAANA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKNVLISTGDKDMAQLVNDHIMLI 152
>gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 957
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L IKA+ I +I + GVEADDVIG LAV++ +
Sbjct: 69 FRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQAANA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKNVLISTGDKDMAQLVNDHIMLI 152
>gi|410693464|ref|YP_003624085.1| DNA polymerase I (POL I) [Thiomonas sp. 3As]
gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As]
Length = 922
Score = 67.8 bits (164), Expect = 8e-10, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ +Y YK RPP P +V ++ + +++ M ++EVPGVEADDVIG LAVR+
Sbjct: 77 FRNAMYDQYKAQRPPMPPDLVAQIEPIHQAVRLMGWPLLEVPGVEADDVIGTLAVRAHAQ 136
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 137 GIRTLVSTGDKDMAQLVNDHITLV 160
>gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38]
gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38]
Length = 950
Score = 67.8 bits (164), Expect = 8e-10, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
++R +Y YK +R TP+ + + Y++ ++AM I +IE G EADD+IG LA ++
Sbjct: 67 DYRFEMYQEYKAHRVETPEAIKIAVPYIQELLRAMHIPIIEKAGFEADDLIGTLAKQAEK 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFEL 94
+GFK+ +V+P+KD +Q++S ++ + + A G ++
Sbjct: 127 EGFKVFMVTPDKDFAQLVSENIFMYKPARMGNDI 160
>gi|424670757|ref|ZP_18107780.1| DNA polymerase I [Stenotrophomonas maltophilia Ab55555]
gi|401070244|gb|EJP78761.1| DNA polymerase I [Stenotrophomonas maltophilia Ab55555]
Length = 924
Score = 67.8 bits (164), Expect = 8e-10, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRPP PD + ++ + ++A+ I ++ VPGVEADDVIG LA++ V
Sbjct: 63 FRDDLYDQYKANRPPMPDELRSQVEPMCRIVEALGISILRVPGVEADDVIGTLALQGVAQ 122
Query: 63 GFKIQVVSPNKD 74
K+ + + +KD
Sbjct: 123 DLKVTISTGDKD 134
>gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12]
gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12]
Length = 934
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ +Y YK RPP P +V ++ + +++ M ++EVPGVEADDVIG LAVR+
Sbjct: 89 FRNAMYDQYKAQRPPMPPDLVAQIEPIHQAVRLMGWPLLEVPGVEADDVIGTLAVRAHAQ 148
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 149 GIRTLVSTGDKDMAQLVNDHITLV 172
>gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
5a2]
Length = 936
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 48/71 (67%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
RHT +P+YK +RP P+ + + Y+K +KA I V+ + G EADD+IG LA ++ G
Sbjct: 72 RHTAFPAYKEHRPSQPEDITVAIPYVKKILKAFRIPVLLLEGYEADDIIGTLARQAAVQG 131
Query: 64 FKIQVVSPNKD 74
F++ +++P+KD
Sbjct: 132 FEVYMMTPDKD 142
>gi|421746990|ref|ZP_16184743.1| DNA polymerase I, partial [Cupriavidus necator HPC(L)]
gi|409774428|gb|EKN56051.1| DNA polymerase I, partial [Cupriavidus necator HPC(L)]
Length = 302
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR LYP+YK +RP PD + + ++ + +++A+ ++ V GVEADDVIG LA ++
Sbjct: 67 TFRDALYPAYKEHRPSMPDDLARQIEPIHEAVRALGWPIVVVDGVEADDVIGSLACQATA 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G + V + +KD +Q+++ S+ L+
Sbjct: 127 EGIRTVVSTGDKDLAQLVNDSVTLV 151
>gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
Length = 830
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y +YK R PTP+ + L +K + + ++ +EVPG EADDV+ LA ++
Sbjct: 69 SFRHQTYEAYKAGRAPTPEDFPRQLALIKEMVDLLGLERLEVPGFEADDVLATLAKKAEK 128
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGF 92
+G+++++++ ++D Q+LS + +L P G+
Sbjct: 129 EGYEVRILTADRDLYQLLSERISILH--PEGY 158
>gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
Length = 954
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L A IKA+ I ++ + GVEADDVIG LAV++
Sbjct: 69 FRDELFEQYKSHRPPMPDELRSQIQPLHAIIKALGIPLLSIEGVEADDVIGTLAVQASQA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKHVLISTGDKDMAQLVNDHIMLI 152
>gi|283797772|ref|ZP_06346925.1| DNA polymerase I [Clostridium sp. M62/1]
gi|291074450|gb|EFE11814.1| DNA-directed DNA polymerase [Clostridium sp. M62/1]
Length = 986
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +Y +YK R P P+ + + + +K + AM I ++ VPG EADDV+G +A R +
Sbjct: 64 FRHKMYEAYKGTRKPMPEELREQVPVIKEVLSAMGIPILSVPGYEADDVLGTIAGRCAAE 123
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPR 90
G ++ +VS ++D L+ +R+ PR
Sbjct: 124 GAEVSIVSGDRDLLQLADEHVKIRM-PR 150
>gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165]
gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165]
Length = 954
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L A IKA+ I ++ + GVEADDVIG LAV++
Sbjct: 69 FRDELFEQYKSHRPPMPDELRSQIQPLHAIIKALGIPLLSIEGVEADDVIGTLAVQASQA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKHVLISTGDKDMAQLVNDHIMLI 152
>gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1]
Length = 830
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y +YK R PTP+ + L +K + + ++ +EVPG EADDV+ LA ++
Sbjct: 69 SFRHQTYEAYKAGRAPTPEDFPRQLALIKEMVDLLGLERLEVPGFEADDVLATLAKKAEK 128
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGF 92
+G+++++++ ++D Q+LS + +L P G+
Sbjct: 129 EGYEVRILTADRDLYQLLSERISILH--PEGY 158
>gi|295092015|emb|CBK78122.1| DNA polymerase I [Clostridium cf. saccharolyticum K10]
Length = 986
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +Y +YK R P P+ + + + +K + AM I ++ VPG EADDV+G +A R +
Sbjct: 64 FRHKMYEAYKGTRKPMPEELREQVPVIKEVLSAMGIPILSVPGYEADDVLGTIAGRCAAE 123
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPR 90
G ++ +VS ++D L+ +R+ PR
Sbjct: 124 GAEVSIVSGDRDLLQLADEHVKIRM-PR 150
>gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT]
gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT]
Length = 951
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + Q +Q L IKA+ I ++ V GVEADDVIG LAV++
Sbjct: 69 FRDEIFEQYKSHRPPMPDDLRQQIQPLHNIIKALGIPLLSVEGVEADDVIGTLAVQASQQ 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 129 GKNVLISTGDKDMAQLVDDNIMLI 152
>gi|443243656|ref|YP_007376881.1| DNA polymerase I [Nonlabens dokdonensis DSW-6]
gi|442801055|gb|AGC76860.1| DNA polymerase I [Nonlabens dokdonensis DSW-6]
Length = 945
Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R +Y YK NR TP+ + + Y++ +KAM I ++E G+EADD+IG LA ++ +G
Sbjct: 74 RVEMYADYKANRDETPEAIKIAVPYIQKILKAMHIPIVEEAGIEADDLIGTLAKQAEKEG 133
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
F +V+P+KD +Q++S ++ + + A G
Sbjct: 134 FTTYMVTPDKDYAQLVSENIFMYKPARMG 162
>gi|232010|sp|P30313.1|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl
polymerase 1
gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus
gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus]
Length = 831
Score = 67.4 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y +YK R PTP+ + L +K + + + +EVPG EADDV+ LA R+
Sbjct: 71 SFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGLVRLEVPGFEADDVLATLAKRAEK 130
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGF 92
+G+++++++ ++D Q+LS + +L P G+
Sbjct: 131 EGYEVRILTADRDLYQLLSERIAILH--PEGY 160
>gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336]
gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336]
Length = 951
Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + Q +Q L IKA+ I ++ V GVEADDVIG LAV++
Sbjct: 69 FRDEIFEQYKSHRPPMPDDLRQQIQPLHNIIKALGIPLLSVEGVEADDVIGTLAVQASQQ 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 129 GKNVLISTGDKDMAQLVDDNIMLI 152
>gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
Length = 950
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y +YK NRP P+ ++ L ++ I+A +I +++ PG EADD+IG A R +
Sbjct: 99 FRHERYDAYKANRPQPPEDLITQLDFIFRLIEAFNIPILKQPGYEADDLIGT-AAREFEP 157
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRGFELV 95
+I +VSP+KD +Q++ + LL+ R EL+
Sbjct: 158 ECRINIVSPDKDMTQLIHDGVTLLKPGKRQNELL 191
>gi|332531416|ref|ZP_08407320.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
gi|332039085|gb|EGI75507.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
Length = 924
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR LYP YK R P PD + ++ + ++ M V++VPGVEADDVIG LAV +
Sbjct: 70 TFRDALYPEYKAQRAPMPDDLRAQIEPIHQVVRLMGWAVLDVPGVEADDVIGTLAVAAAA 129
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G ++ + S +KD SQ+++ + ++
Sbjct: 130 QGVEVFISSGDKDLSQLVNEHIVIV 154
>gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
domains [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar
5b str. L20]
Length = 957
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L IKA+ I +I + GVEADDVIG LAV++ +
Sbjct: 69 FRGELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQAANA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKNVLISTGDKDMAQLVNDHIMLI 152
>gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA]
gi|409911106|ref|YP_006889571.1| DNA polymerase I [Geobacter sulfurreducens KN400]
gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA]
gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400]
Length = 891
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK NR PD +V + +K ++A SI V+E+ G EADD+IG +A R +
Sbjct: 66 FRTEIYPDYKANRAAMPDDLVPQIGPIKEMVRAFSIPVLELEGYEADDIIGTIARRCEEQ 125
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + VV+ +KD QI+S + LL
Sbjct: 126 GLEAVVVTGDKDLMQIVSDRIRLL 149
>gi|153840365|ref|ZP_01993032.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
gi|149745970|gb|EDM57100.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
Length = 323
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK NRPP PD + ++ L I+AM + +I VPGVEADDVIG LA ++
Sbjct: 69 FRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAYQASQQ 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 129 GMPVLISTGDKDMAQLVDDNITLI 152
>gi|402831747|ref|ZP_10880421.1| DNA-directed DNA polymerase [Capnocytophaga sp. CM59]
gi|402280932|gb|EJU29631.1| DNA-directed DNA polymerase [Capnocytophaga sp. CM59]
Length = 928
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R +YP YK NR TP+ + + Y+ ++AM I +IE G EADD+IG L+ ++ G
Sbjct: 67 RTAIYPEYKANREETPEAIRLAIPYIHQILEAMRIPIIEKEGYEADDIIGTLSKQAEKQG 126
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRGFEL 94
+ + +V+P+KD SQ++S + + + A G E+
Sbjct: 127 YTVYMVTPDKDYSQLVSPHIFMYKPARGGNEV 158
>gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
Length = 920
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 6/95 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH ++P+YK R TP+ + Q + +K ++AM I +++V G EADDVIG +A R D
Sbjct: 65 FRHEVFPAYKAQREETPEDIRQSVPIIKQILEAMRIPILQVDGFEADDVIGTVATRFGTD 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFE 93
G +++P+KD Q++ + + R PR G+E
Sbjct: 125 GIDTFMLTPDKDYGQLIGPRVFIFR--PRHGGGYE 157
>gi|392553088|ref|ZP_10300225.1| DNA polymerase I [Pseudoalteromonas spongiae UST010723-006]
Length = 912
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR+ +Y YK NRPP PD + ++ + IKAM + +I +PGVEADDVIG LA R+ +
Sbjct: 68 TFRNDMYSEYKANRPPMPDDLRTQIEPIHNIIKAMGLPLISIPGVEADDVIGTLAKRASE 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+ + + +KD +Q++ + L+
Sbjct: 128 QKRHVLISTGDKDMAQLVDEHVTLI 152
>gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
Length = 920
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 6/95 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH ++P+YK R TP+ + Q + +K ++AM I +++V G EADDVIG +A R D
Sbjct: 65 FRHEVFPAYKAQREETPEDIRQSVPIIKQILEAMRIPILQVDGFEADDVIGTVATRFGTD 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFE 93
G +++P+KD Q++ + + R PR G+E
Sbjct: 125 GIDTFMLTPDKDYGQLIGPRVFIFR--PRHGGGYE 157
>gi|194367713|ref|YP_002030323.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
gi|194350517|gb|ACF53640.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
Length = 924
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRPP PD + ++ + ++A+ I ++ +PGVEADDVIG LA++ V
Sbjct: 63 FRDDLYEQYKANRPPMPDELRSQVEPMCRIVEALGISILRIPGVEADDVIGTLALQGVAQ 122
Query: 63 GFKIQVVSPNKD 74
K+ + + +KD
Sbjct: 123 DLKVTISTGDKD 134
>gi|410446910|ref|ZP_11301012.1| DNA-directed DNA polymerase [SAR86 cluster bacterium SAR86E]
gi|409979897|gb|EKO36649.1| DNA-directed DNA polymerase [SAR86 cluster bacterium SAR86E]
Length = 899
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 43/73 (58%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +Y YK NRPP P+ + + L LK AM + VIE+P VEADDVI LA
Sbjct: 67 NFRHDIYKEYKANRPPMPEDLREQLSPLKEICNAMGMPVIEIPNVEADDVIATLAAIGSK 126
Query: 62 DGFKIQVVSPNKD 74
G + + S +KD
Sbjct: 127 QGMPMIISSLDKD 139
>gi|343506692|ref|ZP_08744163.1| DNA polymerase I [Vibrio ichthyoenteri ATCC 700023]
gi|342801915|gb|EGU37367.1| DNA polymerase I [Vibrio ichthyoenteri ATCC 700023]
Length = 933
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I + GVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISISGVEADDVIGTLAHQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 QGIPVLISTGDKDMAQLVDENVTLI 152
>gi|343510744|ref|ZP_08747955.1| DNA polymerase I [Vibrio scophthalmi LMG 19158]
gi|343516251|ref|ZP_08753292.1| DNA polymerase I [Vibrio sp. N418]
gi|342796671|gb|EGU32344.1| DNA polymerase I [Vibrio sp. N418]
gi|342800959|gb|EGU36453.1| DNA polymerase I [Vibrio scophthalmi LMG 19158]
Length = 933
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I + GVEADDVIG LA ++
Sbjct: 68 TFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISISGVEADDVIGTLAHQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 QGIPVLISTGDKDMAQLVDENVTLI 152
>gi|189346016|ref|YP_001942545.1| DNA polymerase I [Chlorobium limicola DSM 245]
gi|189340163|gb|ACD89566.1| DNA polymerase I [Chlorobium limicola DSM 245]
Length = 943
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH LY YK NRP P+ +V+ ++ + I A SI +I++PG EADD+IG AV+ +
Sbjct: 93 FRHNLYEPYKANRPAPPEDLVRQIEAILELIDAFSIPLIKLPGYEADDLIGS-AVKRFEK 151
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRGFEL 94
I +V+P+KD +Q++ + +L+ + + EL
Sbjct: 152 QCSIYIVTPDKDLAQLVHEGVIMLKPSKKQNEL 184
>gi|433656420|ref|YP_007273799.1| DNA polymerase I [Vibrio parahaemolyticus BB22OP]
gi|432507108|gb|AGB08625.1| DNA polymerase I [Vibrio parahaemolyticus BB22OP]
Length = 931
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK NRPP PD + ++ L I+AM + +I VPGVEADDVIG LA ++
Sbjct: 68 TFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAYQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 QGMPVLISTGDKDMAQLVDDNITLI 152
>gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
Length = 931
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK NRPP PD + ++ L I+AM + +I VPGVEADDVIG LA ++
Sbjct: 68 TFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAYQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 QGMPVLISTGDKDMAQLVDDNITLI 152
>gi|417320976|ref|ZP_12107516.1| DNA polymerase I [Vibrio parahaemolyticus 10329]
gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329]
Length = 930
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK NRPP PD + ++ L I+AM + +I VPGVEADDVIG LA ++
Sbjct: 68 TFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAYQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 QGMPVLISTGDKDMAQLVDDNITLI 152
>gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
Length = 931
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK NRPP PD + ++ L I+AM + +I VPGVEADDVIG LA ++
Sbjct: 68 TFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAYQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 QGMPVLISTGDKDMAQLVDDNITLI 152
>gi|389578957|ref|ZP_10168984.1| DNA polymerase I [Desulfobacter postgatei 2ac9]
gi|389400592|gb|EIM62814.1| DNA polymerase I [Desulfobacter postgatei 2ac9]
Length = 896
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 51/84 (60%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH ++ YK NRPP P+ + + +KA IKA++I +IE G EADD++G A +
Sbjct: 66 TFRHKMFDEYKANRPPMPEELAIQIPDIKAIIKALNIPIIEKTGYEADDLVGTYARIAQA 125
Query: 62 DGFKIQVVSPNKDSQILSHSLCLL 85
GFK+ +V+ +KD L C+L
Sbjct: 126 KGFKVVMVTGDKDFIQLITDDCIL 149
>gi|365540266|ref|ZP_09365441.1| DNA polymerase I [Vibrio ordalii ATCC 33509]
Length = 931
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I + GVEADDVIG LA ++
Sbjct: 68 TFRDDMYPQYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIEGVEADDVIGTLASQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 AGMPVLISTGDKDMAQLVDENVTLI 152
>gi|408822585|ref|ZP_11207475.1| DNA polymerase I [Pseudomonas geniculata N1]
Length = 924
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRPP PD + ++ + ++A+ I ++ +PGVEADDVIG LA++ V
Sbjct: 63 FRDDLYDQYKANRPPMPDELRSQVEPMCRIVEALGISILRIPGVEADDVIGTLALQGVAQ 122
Query: 63 GFKIQVVSPNKD 74
K+ + + +KD
Sbjct: 123 DLKVTISTGDKD 134
>gi|336122868|ref|YP_004564916.1| DNA polymerase I [Vibrio anguillarum 775]
gi|335340591|gb|AEH31874.1| DNA polymerase I [Vibrio anguillarum 775]
Length = 971
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + ++ L I+AM + +I + GVEADDVIG LA ++
Sbjct: 109 TFRDDMYPQYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIEGVEADDVIGTLASQASQ 168
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 169 AGMPVLISTGDKDMAQLVDENVTLI 193
>gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18]
gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18]
Length = 892
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FR+ L+P+YK R P+ + Q ++ +K ++A SI +E+PG EADD+IG +A ++
Sbjct: 66 ITFRNELFPAYKATRSAMPEDLAQQIEPIKQMVRAFSIPALELPGWEADDIIGTIARKAE 125
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLL 85
G VV+ +KD QI+S + LL
Sbjct: 126 AAGMDCVVVTGDKDLMQIVSEHVTLL 151
>gi|347535057|ref|YP_004842482.1| DNA polymerase I [Flavobacterium branchiophilum FL-15]
gi|345528215|emb|CCB68245.1| DNA polymerase I [Flavobacterium branchiophilum FL-15]
Length = 944
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
++R+ +Y YK +R TP+ + + Y++ ++AM I +IE G EADD+IG LA ++
Sbjct: 68 DYRYEMYQEYKAHRDETPEAIKIAVPYIQELLRAMHIPIIEKAGFEADDLIGTLAKQAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
G+++ +V+P+KD +Q++S ++ + + A G
Sbjct: 128 KGYRVFMVTPDKDFAQLVSENIFMYKPARMG 158
>gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237]
gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237]
Length = 945
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R L+P YK NR TPD + + Y++ +KAM I V+ + G EADD+IG LA ++ +
Sbjct: 70 RTELFPEYKANRDATPDAIRIAVPYIQDILKAMHIPVVVLEGWEADDIIGTLAKQAEKED 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+K+ +V+P+KD Q++S ++ + + A G
Sbjct: 130 YKVFMVTPDKDFGQLVSENIFMYKPARMG 158
>gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305]
gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305]
Length = 950
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + +Q L IKA+ I +I + GVEADDVIG LAV++
Sbjct: 69 FRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQAAKA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKDVLISTGDKDMAQLVNEHIMLI 152
>gi|410096891|ref|ZP_11291876.1| DNA polymerase I [Parabacteroides goldsteinii CL02T12C30]
gi|409225508|gb|EKN18427.1| DNA polymerase I [Parabacteroides goldsteinii CL02T12C30]
Length = 928
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + Q + +K I+A +I ++EVP EADDVIG ++ ++ +
Sbjct: 65 FRHEAYELYKAQREETPEVIRQSVPIIKDIIEAYNIPILEVPRFEADDVIGTVSKQAEKE 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLR 86
GF++ +++P+KD Q++S + + R
Sbjct: 125 GFEVYMMTPDKDYGQLVSEHIFMYR 149
>gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
Length = 921
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + YK R TP+ + Q + +K I+A +I ++EVP EADDVIG ++ ++ +
Sbjct: 65 FRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGTVSKQAEKE 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLR 86
GF++ +++P+KD Q++S + + R
Sbjct: 125 GFEVYMMTPDKDYGQLVSEHIFMYR 149
>gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01]
gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B]
gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01]
gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B]
Length = 928
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK NRPP PD + ++ L I+AM + +I VPGVEADDVIG LA ++
Sbjct: 68 TFRDDMYAEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAYQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 KGMPVLISTGDKDMAQLVDDNITLI 152
>gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 952
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L IKA+ I +I + GVEADDVIG LAV++ D
Sbjct: 69 FRDELFKQYKSHRPPMPDDLRPQIEPLHRIIKALGIPLISIEGVEADDVIGTLAVQAAKD 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKDVLISTGDKDMAQLVNDHIMLI 152
>gi|167751303|ref|ZP_02423430.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702]
gi|167655810|gb|EDR99939.1| DNA-directed DNA polymerase [Eubacterium siraeum DSM 15702]
Length = 829
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FRH +Y YK NR P+ + Q L Y+K I AM I +IE G EADD+IG ++
Sbjct: 61 LTFRHKMYDGYKANRKGMPEDLAQQLPYMKKIITAMGITIIEKEGFEADDIIGTVSAACA 120
Query: 61 DDGFKIQVVSPNKDSQILSHSLCLLRIA 88
D V + ++DS L + +R+A
Sbjct: 121 DKKIPCTVSTGDRDSFQLVNDYVTVRLA 148
>gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
gi|452743761|ref|ZP_21943621.1| DNA polymerase I [Mannheimia haemolytica serotype 6 str. H23]
gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
gi|452088205|gb|EME04568.1| DNA polymerase I [Mannheimia haemolytica serotype 6 str. H23]
Length = 952
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L IKA+ I +I + GVEADDVIG LAV++ D
Sbjct: 69 FRDELFKQYKSHRPPMPDDLRPQIEPLHRIIKALGIPLISIEGVEADDVIGTLAVQAAKD 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 129 GKDVLISTGDKDMAQLVNDHIMLI 152
>gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
Length = 921
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + YK R TP+ + Q + +K I+A +I ++EVP EADDVIG ++ ++ +
Sbjct: 65 FRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGTVSKQAEKE 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLR 86
GF++ +++P+KD Q++S + + R
Sbjct: 125 GFEVYMMTPDKDYGQLVSEHIFMYR 149
>gi|423333996|ref|ZP_17311777.1| DNA polymerase I [Parabacteroides distasonis CL03T12C09]
gi|409226145|gb|EKN19055.1| DNA polymerase I [Parabacteroides distasonis CL03T12C09]
Length = 921
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + YK R TP+ + Q + +K I+A +I ++EVP EADDVIG ++ ++ +
Sbjct: 65 FRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGTVSKQAEKE 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLR 86
GF++ +++P+KD Q++S + + R
Sbjct: 125 GFEVYMMTPDKDYGQLVSEHIFMYR 149
>gi|383449641|ref|YP_005356362.1| DNA polymerase I [Flavobacterium indicum GPTSA100-9]
gi|380501263|emb|CCG52305.1| DNA polymerase I [Flavobacterium indicum GPTSA100-9]
Length = 948
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
++R ++ YK NR TP+ + + Y++ ++AM I +IE G EADD+IG LA ++
Sbjct: 67 DYRLEMFTEYKANRDETPEAIKIAVPYIQELLRAMHIPIIEEAGYEADDLIGTLAKQAEK 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGFEL 94
G+K+ +V+P+KD Q++S ++ + R A G ++
Sbjct: 127 QGYKVFMVTPDKDFGQLVSENIFMYRPARMGNDI 160
>gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
Length = 921
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + YK R TP+ + Q + +K I+A +I ++EVP EADDVIG ++ ++ +
Sbjct: 65 FRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGTVSKQAEKE 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLR 86
GF++ +++P+KD Q++S + + R
Sbjct: 125 GFEVYMMTPDKDYGQLVSEHIFMYR 149
>gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13]
gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13]
Length = 925
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + YK R TP+ + Q + +K I+A +I ++EVP EADDVIG ++ ++ +
Sbjct: 69 FRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGTVSKQAEKE 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLR 86
GF++ +++P+KD Q++S + + R
Sbjct: 129 GFEVYMMTPDKDYGQLVSEHIFMYR 153
>gi|255655127|ref|ZP_05400536.1| DNA polymerase I [Clostridium difficile QCD-23m63]
gi|296451114|ref|ZP_06892855.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
gi|296880534|ref|ZP_06904496.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
gi|296259935|gb|EFH06789.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
gi|296428488|gb|EFH14373.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
Length = 882
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R PD + + LQ LK + I +E+ G EADD+IG ++ ++ DD
Sbjct: 65 FRHLEYKEYKAGRKGMPDELAEQLQPLKDLLDKFKINRLEIDGYEADDIIGTVSKKAEDD 124
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
G+K+ +V+ +KD+ L+ I +G
Sbjct: 125 GYKVYIVTGDKDAIQLASDNTTTLITKKG 153
>gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7]
gi|410102610|ref|ZP_11297536.1| DNA polymerase I [Parabacteroides sp. D25]
gi|409238682|gb|EKN31473.1| DNA polymerase I [Parabacteroides sp. D25]
Length = 921
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + YK R TP+ + Q + +K I+A +I ++EVP EADDVIG ++ ++ +
Sbjct: 65 FRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGTVSKQAEKE 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLR 86
GF++ +++P+KD Q++S + + R
Sbjct: 125 GFEVYMMTPDKDYGQLVSEHIFMYR 149
>gi|373106097|ref|ZP_09520401.1| DNA polymerase I [Stomatobaculum longum]
gi|371653193|gb|EHO18597.1| DNA polymerase I [Stomatobaculum longum]
Length = 882
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y +YK R P P+ + + + LK + AM I+ + + G EADDVIG LA R +
Sbjct: 67 FRHERYAAYKGTRKPMPEELREQVPLLKELLGAMHIQTVSLEGFEADDVIGTLAKRCQKE 126
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRI 87
G+++ VVS ++D L+ L+R+
Sbjct: 127 GYEVTVVSGDRDLLQLADRHILIRL 151
>gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3]
gi|423337448|ref|ZP_17315192.1| DNA polymerase I [Parabacteroides distasonis CL09T03C24]
gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3]
gi|409237277|gb|EKN30077.1| DNA polymerase I [Parabacteroides distasonis CL09T03C24]
Length = 921
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + YK R TP+ + Q + +K I+A +I ++EVP EADDVIG ++ ++ +
Sbjct: 65 FRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGTVSKQAEKE 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLR 86
GF++ +++P+KD Q++S + + R
Sbjct: 125 GFEVYMMTPDKDYGQLVSEHIFMYR 149
>gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126]
gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126]
Length = 936
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +P+YK R P+ + + Y+K ++A +I V+ + G EADD+IG +A ++ +D
Sbjct: 73 FRHEEFPAYKAQREEQPEDIRVAIPYVKKIVEAFNIPVLIMDGFEADDIIGTIAKQAGED 132
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
GFK+ +++P+KD +Q+++ ++ L + A G
Sbjct: 133 GFKVYMMTPDKDYAQMVTENVFLYKPAFMG 162
>gi|255003568|ref|ZP_05278532.1| DNA polymerase I [Anaplasma marginale str. Puerto Rico]
gi|255004694|ref|ZP_05279495.1| DNA polymerase I [Anaplasma marginale str. Virginia]
Length = 853
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRHTLYP YK NRP P+ +++ L+ ++ A+ I EV EADDVI L+ +
Sbjct: 66 NFRHTLYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVHNFEADDVIATLSTKYAS 125
Query: 62 DGFKIQVVSPNKD 74
+ +++V++ +KD
Sbjct: 126 EDVQVRVITADKD 138
>gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
Length = 956
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + + +Q L I+++ I ++ V GVEADDVIG LAV++
Sbjct: 68 TFRDKLFEQYKSHRPPMPDDLRRQIQPLHDIIRSLGIPLLSVEGVEADDVIGTLAVQASS 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 128 QGKKVLISTGDKDMAQLVDENIMLI 152
>gi|308272139|emb|CBX28746.1| DNA polymerase I [uncultured Desulfobacterium sp.]
Length = 912
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH ++ YK RPP P+ + + ++K KA ++ VIE+ G EADD+IG LA ++ +
Sbjct: 87 FRHDIFKDYKATRPPMPEDLQVQIPFIKEITKAFNLPVIEIQGYEADDIIGTLARKAEES 146
Query: 63 GFKIQVVSPNKD 74
GF + +V+ +KD
Sbjct: 147 GFSVVMVTGDKD 158
>gi|340618331|ref|YP_004736784.1| DNA polymerase I [Zobellia galactanivorans]
gi|339733128|emb|CAZ96503.1| DNA polymerase I (POL I) [Zobellia galactanivorans]
Length = 943
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R L+P YK NR TPD + + Y++ +KAM I + + G EADD+IG LA ++ +
Sbjct: 70 RTELFPEYKANRDETPDAIKIAIPYIQNILKAMHIPSVVLEGWEADDIIGTLAKQAEKED 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+K+ +V+P+KD Q++S ++ + R A G
Sbjct: 130 YKVFMVTPDKDFGQLVSENIFMYRPARMG 158
>gi|380512069|ref|ZP_09855476.1| DNA polymerase I [Xanthomonas sacchari NCPPB 4393]
Length = 923
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP YK NRPP PD + ++ + + A+ I ++ GVEADDVIG LA++ D
Sbjct: 63 FRDDLYPQYKANRPPMPDELRAQVEPMCQIVHALGITILREDGVEADDVIGTLALQGAGD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLDVTISTGDKD 134
>gi|406595017|ref|YP_006746147.1| DNA polymerase I [Alteromonas macleodii ATCC 27126]
gi|406372338|gb|AFS35593.1| DNA polymerase I [Alteromonas macleodii ATCC 27126]
Length = 930
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK NRPP PD + ++ L A IKAM + VI GVEADDVIG LA + +
Sbjct: 69 FRDDIYKEYKANRPPMPDELRSQIEPLHAIIKAMGLPVIVESGVEADDVIGTLAKHATEK 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + +KD +Q+++ + L+
Sbjct: 129 GIDTLISTGDKDMAQLVNEHVTLI 152
>gi|390948708|ref|YP_006412467.1| DNA polymerase I [Thiocystis violascens DSM 198]
gi|390425277|gb|AFL72342.1| DNA polymerase I [Thiocystis violascens DSM 198]
Length = 907
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FR+ LYP+YK +RPP P+ + + +Q L+ I+AM + ++ +P VEADDVIG LA ++
Sbjct: 66 SFRNDLYPAYKAHRPPMPEDLREQIQPLQEVIRAMGLPLLVIPEVEADDVIGTLATQAAA 125
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + +KD +Q++ + L+
Sbjct: 126 MGIPTLISTGDKDMAQLVDEHVTLV 150
>gi|94971505|ref|YP_593553.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345]
gi|94553555|gb|ABF43479.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345]
Length = 929
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
F+ Y YK NR P+ + Q + Y++ ++ A I +I G EADDVIG LA ++ D
Sbjct: 117 TFQEIAYGGYKANRTEMPEDLTQQMPYIERALNAYRIPMISAEGFEADDVIGTLAKKAAD 176
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + +VS +KD Q+++ +C+L
Sbjct: 177 GGYPVYIVSSDKDMMQLVTERVCIL 201
>gi|148263291|ref|YP_001229997.1| ribonuclease H [Geobacter uraniireducens Rf4]
gi|146396791|gb|ABQ25424.1| Ribonuclease H [Geobacter uraniireducens Rf4]
Length = 484
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP+YK +R P +V L Y++ ++A++I +E PG EADDVI LA R +
Sbjct: 68 FRRELYPAYKAHRDAMPADLVPQLPYIRQILQALNIPALEAPGFEADDVIATLARRYAAE 127
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G ++ VV+ +KD QI+ + LL
Sbjct: 128 GIEVTVVTGDKDLLQIVGDGINLL 151
>gi|56417214|ref|YP_154288.1| DNA polymerase I [Anaplasma marginale str. St. Maries]
gi|56388446|gb|AAV87033.1| DNA polymerase [Anaplasma marginale str. St. Maries]
Length = 864
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRHTLYP YK NRP P+ +++ L+ ++ A+ I EV EADDVI L+ +
Sbjct: 77 NFRHTLYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVHNFEADDVIATLSTKYAS 136
Query: 62 DGFKIQVVSPNKD 74
+ +++V++ +KD
Sbjct: 137 EDVQVRVITADKD 149
>gi|254995381|ref|ZP_05277571.1| DNA polymerase I [Anaplasma marginale str. Mississippi]
Length = 850
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRHTLYP YK NRP P+ +++ L+ ++ A+ I EV EADDVI L+ +
Sbjct: 63 NFRHTLYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVHNFEADDVIATLSTKYAS 122
Query: 62 DGFKIQVVSPNKD 74
+ +++V++ +KD
Sbjct: 123 EDVQVRVITADKD 135
>gi|222475578|ref|YP_002563995.1| DNA polymerase I [Anaplasma marginale str. Florida]
gi|222419716|gb|ACM49739.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida]
Length = 864
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRHTLYP YK NRP P+ +++ L+ ++ A+ I EV EADDVI L+ +
Sbjct: 77 NFRHTLYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVHNFEADDVIATLSTKYAS 136
Query: 62 DGFKIQVVSPNKD 74
+ +++V++ +KD
Sbjct: 137 EDVQVRVITADKD 149
>gi|336450406|ref|ZP_08620857.1| DNA polymerase I [Idiomarina sp. A28L]
gi|336282801|gb|EGN76022.1| DNA polymerase I [Idiomarina sp. A28L]
Length = 944
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR+ +Y YK NRPP PD + ++ L I+AM + +I + GVEADDVIG LA ++ +
Sbjct: 68 TFRNEMYAEYKANRPPMPDDLRSQIEPLHNIIRAMGLPLISIEGVEADDVIGTLAQQAAE 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G + + +KD +Q+++ + L+
Sbjct: 128 EGRTCLISTGDKDMAQLVNEHVILI 152
>gi|222055465|ref|YP_002537827.1| Ribonuclease H [Geobacter daltonii FRC-32]
gi|221564754|gb|ACM20726.1| Ribonuclease H [Geobacter daltonii FRC-32]
Length = 480
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK +R P+ +V + Y++ ++A++I +E PG EADDVI LA R +
Sbjct: 68 FRREIYPPYKAHRDAMPEDLVPQIPYIRKMVQALNIPALEAPGFEADDVIATLARRFAAE 127
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G ++ VV+ +KD QI+ + LL
Sbjct: 128 GIQVTVVTGDKDLLQIVGEGIGLL 151
>gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
Length = 898
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ +YK NR P PD + L+ LK + A+ + IE+ GVEADDVIG LAVR+
Sbjct: 68 FRDELFEAYKANRAPMPDELRVQLEPLKRIVCALGLSRIEIEGVEADDVIGTLAVRASVA 127
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +QI++ ++ LL
Sbjct: 128 GLRTIIATGDKDMAQIVNDNVVLL 151
>gi|407681925|ref|YP_006797099.1| DNA polymerase I [Alteromonas macleodii str. 'English Channel 673']
gi|407243536|gb|AFT72722.1| DNA polymerase I [Alteromonas macleodii str. 'English Channel 673']
Length = 930
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK NRPP PD + ++ L A IKAM + VI GVEADDVIG LA + +
Sbjct: 69 FRDDIYKEYKANRPPMPDELRSQIEPLHAIIKAMGLPVIVESGVEADDVIGTLAKHATEK 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + +KD +Q+++ + L+
Sbjct: 129 GIDTLISTGDKDMAQLVNEHVTLI 152
>gi|444915846|ref|ZP_21235971.1| DNA polymerase I [Cystobacter fuscus DSM 2262]
gi|444712840|gb|ELW53753.1| DNA polymerase I [Cystobacter fuscus DSM 2262]
Length = 891
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R + P+YK NR TP+ + Q Y++ ++ +++ ++EV G EADDVIG LA R+V +G
Sbjct: 73 RQKIDPNYKANRKETPEDLSQQFPYIRRVVEGLALPILEVAGWEADDVIGTLAQRAVAEG 132
Query: 64 FKIQVVSPNKD-SQILSHSLCL 84
F + VV+ +KD QI+S + L
Sbjct: 133 FDVLVVTGDKDFVQIVSERVHL 154
>gi|407685815|ref|YP_006800988.1| DNA polymerase I [Alteromonas macleodii str. 'Balearic Sea AD45']
gi|407289195|gb|AFT93507.1| DNA polymerase I [Alteromonas macleodii str. 'Balearic Sea AD45']
Length = 930
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK NRPP PD + ++ L A IKAM + VI GVEADDVIG LA + +
Sbjct: 69 FRDDIYKEYKANRPPMPDELRSQIEPLHAIIKAMGLPVIVESGVEADDVIGTLAKHATEK 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + +KD +Q+++ + L+
Sbjct: 129 GIDTLISTGDKDMAQLVNEHVTLI 152
>gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I, partial [Kingella denitrificans ATCC
33394]
gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
Length = 984
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH L+ YK RPP PD + L ++ M KV++VP VEADDVIG LAV++
Sbjct: 125 NFRHELFEDYKATRPPMPDDLRPQADMLPELVELMGWKVLKVPQVEADDVIGTLAVQAAA 184
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+ + + +KD +Q++S + L+
Sbjct: 185 QKMNVVISTGDKDMAQLVSEHITLV 209
>gi|225629756|ref|ZP_03787705.1| DNA polymerase I [Wolbachia endosymbiont of Muscidifurax uniraptor]
gi|225591390|gb|EEH12481.1| DNA polymerase I [Wolbachia endosymbiont of Muscidifurax uniraptor]
Length = 261
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH LYP YK NR P+ + L+ +++A ++ E+ G EADD+I LA + +
Sbjct: 63 NFRHNLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIATLAAKYAN 122
Query: 62 -DGFKIQVVSPNKD-SQILSHSLCLL 85
FK+ VVS +KD Q+L+H++ +
Sbjct: 123 HQDFKVVVVSSDKDLFQLLNHNILIF 148
>gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004]
gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Xenorhabdus bovienii SS-2004]
Length = 932
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + + ++ L ++AM + ++ VPGVEADDVIG LA+++
Sbjct: 68 TFRDELFAEYKSHRPPMPDDLREQIEPLHKMVEAMGLPILVVPGVEADDVIGTLALQAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G + + + +KD +Q+++ + L+
Sbjct: 128 EGRSVLISTGDKDMAQLVTPYITLI 152
>gi|221135267|ref|ZP_03561570.1| DNA polymerase I [Glaciecola sp. HTCC2999]
Length = 931
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK NRPP PD + + L A IKAM + +I P VEADDVIG L R+
Sbjct: 69 FRDDIYPEYKANRPPMPDELRSQIAPLHAIIKAMGLPLIVEPNVEADDVIGTLTKRATAL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K V + +KD +Q++ + L+
Sbjct: 129 GMKSLVSTGDKDMAQLVDDHVTLI 152
>gi|427384796|ref|ZP_18881301.1| DNA polymerase I [Bacteroides oleiciplenus YIT 12058]
gi|425728057|gb|EKU90916.1| DNA polymerase I [Bacteroides oleiciplenus YIT 12058]
Length = 952
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A I ++EVPG EADDVIG LA +
Sbjct: 80 FRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGTLATEAGKQ 139
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++S ++ + R P+ GFE++
Sbjct: 140 GITTYMMTPDKDYGQLVSENVFMYR--PKHTGGFEVM 174
>gi|423016455|ref|ZP_17007176.1| DNA polymerase I [Achromobacter xylosoxidans AXX-A]
gi|338780532|gb|EGP44939.1| DNA polymerase I [Achromobacter xylosoxidans AXX-A]
Length = 905
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP YK++RPP P+ + ++ + +++A+ V+ + GVEADDVIG LA R+ +
Sbjct: 65 FRDDLYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGTLACRAAER 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G V + +KD +Q+++ + L+
Sbjct: 125 GVHTVVSTGDKDLAQLVNSHVTLV 148
>gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
Length = 949
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH Y YK R TP+ + + Y+K I+A I + E+ G EADDVIG +A R
Sbjct: 72 TFRHETYEEYKAQRQKTPEDIKNAIPYIKRIIEAYGIGIFEMEGYEADDVIGTMAKRLQG 131
Query: 62 DGFKIQVVSPNKD 74
+GF + +++P+KD
Sbjct: 132 EGFGVYMMTPDKD 144
>gi|355682862|ref|ZP_09062685.1| hypothetical protein HMPREF9469_05722 [Clostridium citroniae
WAL-17108]
gi|354810747|gb|EHE95385.1| hypothetical protein HMPREF9469_05722 [Clostridium citroniae
WAL-17108]
Length = 928
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y YK R P P+ + Q +Q +K + AM + ++ +PG EADD++G +A +S
Sbjct: 63 TFRHEMYDDYKGTRKPMPEELHQQVQVMKDVLTAMGVPIMTLPGFEADDILGTVAKKSQA 122
Query: 62 DGFKIQVVSPNKDSQILSHSLCLLRI 87
G + VVS ++D L+ +RI
Sbjct: 123 RGINVSVVSGDRDLLQLADEHIKIRI 148
>gi|456735300|gb|EMF60061.1| DNA polymerase I [Stenotrophomonas maltophilia EPM1]
Length = 924
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRPP PD + ++ + ++A+ I ++ VPGVEADDVIG LA++ +
Sbjct: 63 FRDDLYDQYKANRPPMPDELRSQVEPMCRIVEALGISILRVPGVEADDVIGTLALQGLAQ 122
Query: 63 GFKIQVVSPNKD 74
K+ + + +KD
Sbjct: 123 DLKVTISTGDKD 134
>gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000]
gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000]
Length = 946
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP+YK +R P PD + Q ++ + +++A+ ++ V GVEADDVIG LA R+ +
Sbjct: 70 FRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILMVDGVEADDVIGTLAERAARE 129
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 130 GIRTVVSTGDKDLAQLVNDHVTLV 153
>gi|389799363|ref|ZP_10202358.1| DNA polymerase I [Rhodanobacter sp. 116-2]
gi|388442780|gb|EIL98947.1| DNA polymerase I [Rhodanobacter sp. 116-2]
Length = 916
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRPP PD + ++ + A + A+ ++ V GVEADDVIG LA+++
Sbjct: 63 FRDALYAQYKANRPPMPDDLRSQVEPMLAIVAALGFPILRVGGVEADDVIGTLALQAQAQ 122
Query: 63 GFKIQVVSPNKD 74
G +++V + +KD
Sbjct: 123 GIEVEVSTSDKD 134
>gi|352086477|ref|ZP_08953979.1| DNA polymerase I [Rhodanobacter sp. 2APBS1]
gi|351679442|gb|EHA62583.1| DNA polymerase I [Rhodanobacter sp. 2APBS1]
Length = 916
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRPP PD + ++ + A + A+ ++ V GVEADDVIG LA+++
Sbjct: 63 FRDALYAQYKANRPPMPDDLRSQVEPMLAIVAALGFPILRVGGVEADDVIGTLALQAQAQ 122
Query: 63 GFKIQVVSPNKD 74
G +++V + +KD
Sbjct: 123 GIEVEVSTSDKD 134
>gi|387770848|ref|ZP_10127021.1| DNA-directed DNA polymerase [Pasteurella bettyae CCUG 2042]
gi|386903269|gb|EIJ68085.1| DNA-directed DNA polymerase [Pasteurella bettyae CCUG 2042]
Length = 956
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + + +Q L IKA+ I ++ + GVEADDVIG LA ++
Sbjct: 69 FRDELFEQYKSHRPPMPDELRKQIQPLHHMIKALGIPLLSIEGVEADDVIGTLATQASQA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDDNVMLI 152
>gi|422322190|ref|ZP_16403232.1| DNA polymerase I [Achromobacter xylosoxidans C54]
gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54]
Length = 948
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP YK++RPP P+ + ++ + +++A+ V+ + GVEADDVIG LA R+ +
Sbjct: 108 FRDDLYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGTLACRAAER 167
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G V + +KD +Q+++ + L+
Sbjct: 168 GVHTVVSTGDKDLAQLVNSHVTLV 191
>gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
18228]
gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
18228]
Length = 932
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH YP YK R TP+ + + +K I+A I ++EVPG EADDVIG LA +
Sbjct: 75 FRHEAYPEYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGTLATEAGKR 134
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLR 86
G +++P+KD Q++ ++ + R
Sbjct: 135 GITTYMMTPDKDYGQLVGENVFMYR 159
>gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a]
gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a]
Length = 924
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRPP PD + ++ + ++A+ I ++ VPGVEADDVIG LA++ +
Sbjct: 63 FRDDLYDQYKANRPPMPDELRSQVEPMCRIVEALGISILRVPGVEADDVIGTLALQGLAQ 122
Query: 63 GFKIQVVSPNKD 74
K+ + + +KD
Sbjct: 123 DLKVTISTGDKD 134
>gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
Length = 939
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
RHT + YK NR P+ ++ L +K IK +I V+E+ G EADDVIG LA ++ D G
Sbjct: 68 RHTTFVDYKANRMDAPEDILDSLDDIKRIIKGFNIPVVELDGYEADDVIGTLAWQAADAG 127
Query: 64 FKIQVVSPNKD 74
+ + +V+P+KD
Sbjct: 128 YDVYMVTPDKD 138
>gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
17393]
gi|189437164|gb|EDV06149.1| DNA-directed DNA polymerase [Bacteroides intestinalis DSM 17393]
Length = 941
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A I ++EVPG EADDVIG LA +
Sbjct: 69 FRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGTLATEAGRQ 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++S ++ + R P+ GFE++
Sbjct: 129 GITTYMMTPDKDYGQLVSENVFMYR--PKHTGGFEIM 163
>gi|260220820|emb|CBA28768.1| hypothetical protein Csp_A08790 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 430
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK +R P PD + + + ++ + KV++VPGVEADDVIG LA +
Sbjct: 83 FRDEIYPEYKAHRDPMPDDLRSQIAPIHEIVRLLGWKVLDVPGVEADDVIGTLAATAASQ 142
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G ++ V S +KD +Q+++ + ++
Sbjct: 143 GIEVIVSSGDKDLAQLVNEHITII 166
>gi|398803654|ref|ZP_10562672.1| DNA polymerase I [Polaromonas sp. CF318]
gi|398095907|gb|EJL86238.1| DNA polymerase I [Polaromonas sp. CF318]
Length = 943
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR LYP YK R P PD + ++ + ++ + KV++VPGVEADDVIG LA +
Sbjct: 71 TFRDALYPEYKAQRSPMPDDLRSQVEPIHEVVRLLGWKVLDVPGVEADDVIGTLACLASS 130
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G ++ + S +KD SQ++ ++ ++
Sbjct: 131 QGIEVIISSGDKDLSQLVDENITVI 155
>gi|340351566|ref|ZP_08674478.1| DNA-directed DNA polymerase I [Prevotella pallens ATCC 700821]
gi|339617850|gb|EGQ22463.1| DNA-directed DNA polymerase I [Prevotella pallens ATCC 700821]
Length = 950
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 6/99 (6%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FRH YP YK R TP+ + + Y+K + AM I +++V G EADD+IG +A ++
Sbjct: 93 LTFRHEAYPEYKAQREETPEDIKLSVPYIKQILGAMHIPILQVDGFEADDIIGTIATQAG 152
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ ++ + R PR G++++
Sbjct: 153 KKGISTYMLTPDKDYGQLIQENVYMYR--PRHGGGYDII 189
>gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
Length = 931
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R L+P YK NR TP+ + + Y+ + AM I VIE G EADD+IG LA ++ G
Sbjct: 67 RSALFPEYKANREETPEAIRFAIPYIHQILHAMQIPVIEKEGYEADDIIGTLAKQAEKQG 126
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+ + +V+P+KD Q++S ++ + + A G
Sbjct: 127 YTVYMVTPDKDYGQLVSPNIFMYKPARGG 155
>gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
Length = 903
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH ++ +YK RPP PD +V L ++ + A ++ V E G EADDV+G LA R+
Sbjct: 66 TFRHEMFKAYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLATRAAA 125
Query: 62 DGFKIQVVSPNKDS-QILSHSLCLLRIAPRG 91
G ++ + S + DS Q++ + +L P G
Sbjct: 126 AGMEVIIASGDADSMQLVGPDIRILYPGPAG 156
>gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ]
gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ]
Length = 888
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FR LYP+YK NR PD + Q + ++ ++A +I V+E+ G EADD+IG LA R
Sbjct: 63 VTFRTELYPAYKANRAEMPDDLRQQIGPIRDLVRAFNIPVVELQGYEADDLIGTLAARWE 122
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLL 85
G ++ VV+ +KD QI++ LL
Sbjct: 123 ATGGQVVVVTGDKDLMQIVTEQTTLL 148
>gi|325294546|ref|YP_004281060.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325064994|gb|ADY73001.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 838
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L YK NR PTPD+ L Y+K ++ + I ++E G EADD++G A + +
Sbjct: 66 FRSKLLKEYKANRKPTPDSFKLQLPYIKKFLECLGITILEKEGFEADDILGTAAKKFASE 125
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
G+++ VV+P+KD Q++ + ++ I G
Sbjct: 126 GYRVFVVTPDKDMRQLIDGKISVIAINKTG 155
>gi|406979046|gb|EKE00901.1| hypothetical protein ACD_21C00255G0003 [uncultured bacterium]
Length = 896
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK RPP + + ++ L IKAM + ++ + G EADDVIG LA R+
Sbjct: 68 NFRHEMYPQYKATRPPMEEDLKVQIEPLHEVIKAMGLPLLVIAGAEADDVIGTLARRAAK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
F + + + +KD +Q++ ++ L+
Sbjct: 128 KDFAVLISTGDKDMAQLVDKNITLV 152
>gi|397641007|gb|EJK74429.1| hypothetical protein THAOC_03891 [Thalassiosira oceanica]
Length = 700
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH LYP YK NR P P+ ++ +K + A + IE G EADDVI LA +V
Sbjct: 418 NFRHELYPEYKANRGPCPEDLIPQFALVKEAATAFGLPQIEAEGYEADDVIATLAKIAVK 477
Query: 62 DGFKIQVVSPNKD 74
+G + ++S +KD
Sbjct: 478 EGVAVDIMSGDKD 490
>gi|344209382|ref|YP_004794523.1| DNA polymerase I [Stenotrophomonas maltophilia JV3]
gi|343780744|gb|AEM53297.1| DNA polymerase I [Stenotrophomonas maltophilia JV3]
Length = 924
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRPP PD + ++ + ++A+ I ++ +PGVEADDVIG LA++ +
Sbjct: 63 FRDDLYEQYKANRPPMPDELRSQVEPMCRIVEALGISILRIPGVEADDVIGTLALQGLAQ 122
Query: 63 GFKIQVVSPNKD 74
K+ + + +KD
Sbjct: 123 DLKVTISTGDKD 134
>gi|381187190|ref|ZP_09894755.1| DNA polymerase I [Flavobacterium frigoris PS1]
gi|379650800|gb|EIA09370.1| DNA polymerase I [Flavobacterium frigoris PS1]
Length = 946
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
R+ ++P YK +R TP+ + + Y++ ++AM I +IEV G EADD+IG +A ++ +
Sbjct: 69 LRNEIFPEYKAHRDATPEAIKIAVPYIQDLLRAMHIPIIEVKGYEADDLIGTIAKQAEKE 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+K+ +V+P+KD +Q++S ++ + + A G
Sbjct: 129 NYKVFMVTPDKDFAQLVSENIFMYKPARMG 158
>gi|291296659|ref|YP_003508057.1| DNA polymerase I [Meiothermus ruber DSM 1279]
gi|290471618|gb|ADD29037.1| DNA polymerase I [Meiothermus ruber DSM 1279]
Length = 1273
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + YK R TPD L+ +K + M ++ +EVPG EADDVIG LA ++ +
Sbjct: 81 FRHDAFEEYKAGRAATPDDFHPQLEKIKELVDLMGLQRLEVPGYEADDVIGTLAKKAEQE 140
Query: 63 GFKIQVVSPNKDS-QILSHSL 82
G+ +++++ ++DS Q+LS ++
Sbjct: 141 GYPVRILTGDRDSFQLLSEAV 161
>gi|224368350|ref|YP_002602513.1| protein PolA [Desulfobacterium autotrophicum HRM2]
gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2]
Length = 891
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR+ ++ +YK NRPP PD + + Y+K +KA++I ++E G EADD+IG A + +
Sbjct: 64 TFRNAMFDAYKANRPPMPDDLRLQIPYIKEVVKALNIPIVEKTGFEADDLIGTYARLAEE 123
Query: 62 DGFKIQVVSPNKD 74
GF + +V+ +KD
Sbjct: 124 KGFAVVMVTGDKD 136
>gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
Length = 903
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH ++ +YK RPP PD +V L ++ + A ++ V E G EADDV+G LA R+
Sbjct: 66 TFRHEMFKAYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLATRAAA 125
Query: 62 DGFKIQVVSPNKDS-QILSHSLCLLRIAPRG 91
G ++ + S + DS Q++ + +L P G
Sbjct: 126 AGMEVIIASGDADSMQLVGPDIRILYPGPAG 156
>gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
Length = 872
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK NR TPD + +K ++A I V+E+ G EADD+IG LA ++ ++
Sbjct: 68 FRHEEYEEYKANRKETPDKLKPQFGLMKEVLEAFRIPVVELEGYEADDIIGTLARQAEEE 127
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
G+++ +V+ ++D+ L +R RG
Sbjct: 128 GYQVTIVTGDRDALQLVTEQTKIRYTKRG 156
>gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803]
gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803]
Length = 942
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R ++ YK NR TP+ + + + ++ +KAM I V+E G+EADD+IG LA ++ +
Sbjct: 70 RTEMFAEYKANRDETPEPIREAIPIIQDILKAMHIPVVECAGMEADDIIGTLAKQAEKEN 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+K+ +V+P+KD +Q++S ++ + R A G
Sbjct: 130 YKVYMVTPDKDFAQLVSENIFMYRPARMG 158
>gi|342731948|ref|YP_004770787.1| DNA polymerase I [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|384455366|ref|YP_005667960.1| DNA polymerase I [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417960585|ref|ZP_12603158.1| DNA polymerase I [Candidatus Arthromitus sp. SFB-1]
gi|417962105|ref|ZP_12604382.1| DNA polymerase I [Candidatus Arthromitus sp. SFB-2]
gi|417964465|ref|ZP_12606191.1| DNA polymerase I [Candidatus Arthromitus sp. SFB-4]
gi|417969282|ref|ZP_12610229.1| DNA polymerase I [Candidatus Arthromitus sp. SFB-co]
gi|418016660|ref|ZP_12656224.1| DNA-directed DNA polymerase I [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372195|ref|ZP_12964290.1| DNA polymerase I [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|342329403|dbj|BAK56045.1| DNA polymerase I [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|345505633|gb|EGX27928.1| DNA-directed DNA polymerase I [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346983708|dbj|BAK79384.1| DNA polymerase I [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380330670|gb|EIA21867.1| DNA polymerase I [Candidatus Arthromitus sp. SFB-1]
gi|380331124|gb|EIA22223.1| DNA polymerase I [Candidatus Arthromitus sp. SFB-2]
gi|380338116|gb|EIA27052.1| DNA polymerase I [Candidatus Arthromitus sp. SFB-co]
gi|380341359|gb|EIA29839.1| DNA polymerase I [Candidatus Arthromitus sp. SFB-4]
gi|380342801|gb|EIA31234.1| DNA polymerase I [Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 857
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 56/89 (62%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y +YK+ R P+ + + L+ LK +KAM+I + E+ G EADD+IG L+ ++
Sbjct: 64 FRHLEYSNYKSGRKSMPNELFEQLEPLKEILKAMNINIFELDGFEADDLIGTLSRIYEEE 123
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF+ +V+ +KD+ LS S+ + I +G
Sbjct: 124 GFEPIIVTGDKDALQLSSSITKVIITKKG 152
>gi|451972454|ref|ZP_21925662.1| DNA polymerase I [Vibrio alginolyticus E0666]
gi|451931664|gb|EMD79350.1| DNA polymerase I [Vibrio alginolyticus E0666]
Length = 928
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK NRPP PD + ++ L I+AM + +I VPGVEADDVIG LA ++
Sbjct: 68 TFRDDMYAEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAHQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 KGMPVLISTGDKDMAQLVDDNITLI 152
>gi|386332868|ref|YP_006029037.1| dna polymeraseIprotein [Ralstonia solanacearum Po82]
gi|334195316|gb|AEG68501.1| dna polymeraseIprotein [Ralstonia solanacearum Po82]
Length = 944
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP+YK +R P PD + Q ++ + +++A+ ++ V GVEADDVIG LA R+ +
Sbjct: 68 FRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLAERAARE 127
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 128 GIRTVVSTGDKDLAQLVNDHVTLV 151
>gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25]
gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25]
gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25]
gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25]
Length = 928
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK NRPP PD + ++ L I+AM + +I VPGVEADDVIG LA ++
Sbjct: 68 TFRDDMYAEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAHQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 KGMPVLISTGDKDMAQLVDDNITLI 152
>gi|291556803|emb|CBL33920.1| DNA polymerase I [Eubacterium siraeum V10Sc8a]
Length = 829
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y YK NR P+ + Q L Y+K I AM I +IE G EADD+IG ++ D
Sbjct: 62 TFRHKMYDGYKANRKGMPEDLAQQLPYMKKIITAMGITIIEKEGFEADDIIGTVSAACAD 121
Query: 62 DGFKIQVVSPNKDSQILSHSLCLLRIA 88
V + ++DS L + +R+A
Sbjct: 122 KKIPCTVSTGDRDSFQLVNDYVTVRLA 148
>gi|291531643|emb|CBK97228.1| DNA polymerase I [Eubacterium siraeum 70/3]
Length = 829
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y YK NR P+ + Q L Y+K I AM I +IE G EADD+IG ++ D
Sbjct: 62 TFRHKMYDGYKANRKGMPEDLAQQLPYMKKIITAMGITIIEKEGFEADDIIGTVSAACAD 121
Query: 62 DGFKIQVVSPNKDSQILSHSLCLLRIA 88
V + ++DS L + +R+A
Sbjct: 122 KKIPCTVSTGDRDSFQLVNDYVTVRLA 148
>gi|166031749|ref|ZP_02234578.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC
27755]
gi|166028202|gb|EDR46959.1| DNA-directed DNA polymerase [Dorea formicigenerans ATCC 27755]
Length = 875
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y +YK R P D + Q + +K + +M IK IE G+EADD++G L+ R +
Sbjct: 68 TFRHKMYDAYKGTRKPMADELRQQVPVIKEVLCSMGIKTIECAGLEADDLLGTLSRRCEE 127
Query: 62 DGFKIQVVSPNKDSQILSHSLCLLRI 87
+G ++ V+S ++D L+ +RI
Sbjct: 128 EGMEVSVISGDRDLLQLATQHVKIRI 153
>gi|421891276|ref|ZP_16322087.1| DNA polymerase I (POL I) [Ralstonia solanacearum K60-1]
gi|378963385|emb|CCF98835.1| DNA polymerase I (POL I) [Ralstonia solanacearum K60-1]
Length = 944
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP+YK +R P PD + Q ++ + +++A+ ++ V GVEADDVIG LA R+ +
Sbjct: 68 FRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLAERAARE 127
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 128 GIRTVVSTGDKDLAQLVNDHVTLV 151
>gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
Length = 944
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP+YK +R P PD + Q ++ + +++A+ ++ V GVEADDVIG LA R+ +
Sbjct: 68 FRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLAERAARE 127
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 128 GIRTVVSTGDKDLAQLVNDHVTLV 151
>gi|188997399|ref|YP_001931650.1| 5'-3' exonuclease [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932466|gb|ACD67096.1| 5'-3' exonuclease [Sulfurihydrogenibium sp. YO3AOP1]
Length = 299
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
RH + YK R TPD + Q + LK I+ + IK++E+PG EADD+I L+ ++
Sbjct: 64 TLRHEKFSEYKATRKETPDPLKQQIPILKEIIQLLGIKILEIPGYEADDIIATLSKKAEK 123
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G++ +V+P+KD +Q++S ++ +
Sbjct: 124 EGYEAIIVTPDKDMNQLISDNIKIF 148
>gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551]
gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551]
Length = 946
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP+YK +R P PD + Q ++ + +++A+ ++ V GVEADDVIG LA R+ +
Sbjct: 70 FRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLAERAARE 129
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 130 GIRTVVSTGDKDLAQLVNDHVTLV 153
>gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
Length = 914
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH LYP YK NRPP P+ +V + ++A+ ++ GVEADDVIG LA ++
Sbjct: 66 FRHELYPDYKKNRPPMPEELVVQISSTHDMVRALGFPLLMENGVEADDVIGTLAKQAEAV 125
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + S +KD +Q+++ S+ L+
Sbjct: 126 GMQTLIFSNDKDFAQLVNESITLI 149
>gi|344337497|ref|ZP_08768431.1| DNA polymerase I [Thiocapsa marina 5811]
gi|343802450|gb|EGV20390.1| DNA polymerase I [Thiocapsa marina 5811]
Length = 905
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK NRP PD + + + L+ I+AM + ++ VP VEADDVIG LA R+
Sbjct: 67 FRDDIYPEYKANRPAMPDELREQILPLQEVIRAMGLPLLVVPDVEADDVIGTLATRAAAQ 126
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G V + +KD +Q++ + L+
Sbjct: 127 GIPTLVSTGDKDMAQLVGEHVTLV 150
>gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957]
gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957]
Length = 960
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP+YK +R P PD + Q ++ + +++A+ ++ V GVEADDVIG LA R+ +
Sbjct: 84 FRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLAERAARE 143
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 144 GIRTVVSTGDKDLAQLVNDHVTLV 167
>gi|421897737|ref|ZP_16328104.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
Length = 944
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP+YK +R P PD + Q ++ + +++A+ ++ V GVEADDVIG LA R+ +
Sbjct: 68 FRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLAERAARE 127
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 128 GIRTVVSTGDKDLAQLVNDHVTLV 151
>gi|441496674|ref|ZP_20978901.1| DNA polymerase I [Fulvivirga imtechensis AK7]
gi|441439538|gb|ELR72853.1| DNA polymerase I [Fulvivirga imtechensis AK7]
Length = 892
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + +YK R TP+ + G+ +K ++A +I VIE G EADD+IG LA ++
Sbjct: 31 FRHEEFEAYKATRQETPEDIKTGIPVVKDIVRAFNIPVIECDGYEADDIIGTLAKQASKS 90
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
GF++ +++P+KD Q++ + L + A G
Sbjct: 91 GFEVYMMTPDKDFGQLVEEHVYLYKPAYMG 120
>gi|339319926|ref|YP_004679621.1| DNA polymerase I [Candidatus Midichloria mitochondrii IricVA]
gi|338226051|gb|AEI88935.1| DNA polymerase I [Candidatus Midichloria mitochondrii IricVA]
Length = 847
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
N RH L+P YK NRP PD + ++ +++A++I ++ V G EADD+I AV++V
Sbjct: 62 NHRHELFPEYKANRPTLPDDLKVQFPIIREALQALNITIVGVDGHEADDLIATYAVKAVK 121
Query: 62 DGFKIQVVSPNKD-SQILSHS 81
G + ++S +KD Q+LS+S
Sbjct: 122 LGNDVTIISSDKDLMQLLSYS 142
>gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
Length = 952
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A I ++EVPG EADDVIG LA +
Sbjct: 69 FRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGTLATEAGKQ 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++S ++ + R P+ GFE++
Sbjct: 129 GITTYMMTPDKDYGQLVSDNVFMYR--PKHSGGFEVM 163
>gi|388567029|ref|ZP_10153468.1| DNA polymerase I [Hydrogenophaga sp. PBC]
gi|388265734|gb|EIK91285.1| DNA polymerase I [Hydrogenophaga sp. PBC]
Length = 929
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR LY YK NR P PD + + + ++ + VI+VPGVEADDVIG LA + +
Sbjct: 72 TFRDALYTEYKANRSPMPDDLRAQIPPIHEVVRLLGFPVIDVPGVEADDVIGTLARAAAE 131
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
GF + V S +KD +Q+++ + ++
Sbjct: 132 QGFDVIVSSGDKDLAQLVNERIAII 156
>gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666]
gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666]
Length = 944
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR LYP YK R P PD + ++ + ++ + KV++VPGVEADDVIG LA +
Sbjct: 71 TFRDALYPQYKAQRSPMPDDLRSQVEPIHEVVRLLGWKVLDVPGVEADDVIGTLACLASK 130
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G ++ + S +KD SQ++ ++ ++
Sbjct: 131 QGIEVIISSGDKDLSQLVDENITVI 155
>gi|381181016|ref|ZP_09889852.1| DNA polymerase I [Treponema saccharophilum DSM 2985]
gi|380767021|gb|EIC01024.1| DNA polymerase I [Treponema saccharophilum DSM 2985]
Length = 963
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +YP YK NR TPD + +++ + A+ I + G EADDVI +A R+ +
Sbjct: 84 FRHEMYPEYKANRQETPDDLKAQFPWIEEIMAALGITAVRSDGFEADDVIATVARRASAE 143
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLR 86
GF++ V+S +KD Q++ ++ +LR
Sbjct: 144 GFRVFVLSGDKDLLQLVGGNVGILR 168
>gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15]
Length = 959
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP+YK +R P PD + Q ++ + +++A+ ++ V GVEADDVIG LA R+ +
Sbjct: 84 FRDDLYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILMVDGVEADDVIGTLAERATRE 143
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 144 GVRTVVSTGDKDLAQLVNDHVTLV 167
>gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
Length = 924
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRPP PD + ++ + ++A+ I ++ +PGVEADDVIG LA++ +
Sbjct: 63 FRDDLYDQYKANRPPMPDELRSQVEPMCRIVEALGISILRIPGVEADDVIGTLALQGLAQ 122
Query: 63 GFKIQVVSPNKD 74
K+ + + +KD
Sbjct: 123 DLKVTISTGDKD 134
>gi|451947544|ref|YP_007468139.1| DNA polymerase I [Desulfocapsa sulfexigens DSM 10523]
gi|451906892|gb|AGF78486.1| DNA polymerase I [Desulfocapsa sulfexigens DSM 10523]
Length = 890
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +YP YK NRPP PD + + Y+K + AM+I E+ G+EADD+I
Sbjct: 65 FRHEIYPEYKANRPPMPDDLAVQIPYIKELVHAMNIPCFEIEGIEADDIIAAAVKVLSGQ 124
Query: 63 GFKIQVVSPNKD 74
KI VVS +KD
Sbjct: 125 ERKIVVVSGDKD 136
>gi|386720463|ref|YP_006186789.1| DNA polymerase I [Stenotrophomonas maltophilia D457]
gi|384080025|emb|CCH14628.1| DNA polymerase I [Stenotrophomonas maltophilia D457]
Length = 924
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRPP PD + ++ + ++A+ I ++ +PGVEADDVIG LA++ +
Sbjct: 63 FRDDLYDQYKANRPPMPDELRSQVEPMCRIVEALGISILRIPGVEADDVIGTLALQGLAQ 122
Query: 63 GFKIQVVSPNKD 74
K+ + + +KD
Sbjct: 123 DLKVTISTGDKD 134
>gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
571]
gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
571]
Length = 867
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y +YK R P+ +++ + LK I A +IK IE+ G EADD+IG ++ + ++
Sbjct: 64 FRHKEYSAYKGTRQSMPEELIEQVDILKDVINAFNIKTIEIEGFEADDIIGTVSKIASEN 123
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
G K+ +V+ ++D+ L ++I +G
Sbjct: 124 GLKVLIVTGDRDALQLVSDGVKVKICKKG 152
>gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1]
gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1]
Length = 904
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 10/96 (10%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK +RPP PD + + LKA I A+ + V+EVPGVEADDVIG LA R+
Sbjct: 68 FRDELFEQYKAHRPPMPDELRAQREPLKAIIAALGVPVLEVPGVEADDVIGTLAARASG- 126
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL------RIAPRG 91
+ + + +KD +Q++ + LL R+ P G
Sbjct: 127 --PVLISTTDKDMAQLVDEQVTLLNTMSGTRLDPEG 160
>gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp. PCC 6803]
gi|383323692|ref|YP_005384546.1| DNA polymerase I [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383326861|ref|YP_005387715.1| DNA polymerase I [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383492745|ref|YP_005410422.1| DNA polymerase I [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384438013|ref|YP_005652738.1| DNA polymerase I [Synechocystis sp. PCC 6803]
gi|451816101|ref|YP_007452553.1| DNA polymerase I [Synechocystis sp. PCC 6803]
gi|6225285|sp|Q55971.1|DPO1_SYNY3 RecName: Full=DNA polymerase I; Short=POL I
gi|1006595|dbj|BAA10748.1| DNA polymerase I [Synechocystis sp. PCC 6803]
gi|339275046|dbj|BAK51533.1| DNA polymerase I [Synechocystis sp. PCC 6803]
gi|359273012|dbj|BAL30531.1| DNA polymerase I [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359276182|dbj|BAL33700.1| DNA polymerase I [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359279352|dbj|BAL36869.1| DNA polymerase I [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407960414|dbj|BAM53654.1| DNA polymerase I [Bacillus subtilis BEST7613]
gi|451782070|gb|AGF53039.1| DNA polymerase I [Synechocystis sp. PCC 6803]
Length = 986
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 48/73 (65%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +YK+NR TP+ + L YL+ ++A++++ I G EADD++G LA + D
Sbjct: 74 TFRHEADGAYKSNRQETPEDFAEDLSYLQQLLEALNLQTITYAGYEADDILGTLACQGSD 133
Query: 62 DGFKIQVVSPNKD 74
G++++++S ++D
Sbjct: 134 AGYQVKILSGDRD 146
>gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 927
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR TLYP YK +R P PD + ++ + ++ M V+ VPGVEADDVIG LA +
Sbjct: 71 FRDTLYPEYKAHRAPMPDDLRAQIEPIHQVVRLMGWPVVCVPGVEADDVIGTLAACAARQ 130
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G ++ V S +KD SQ++ + ++
Sbjct: 131 GIEVIVSSGDKDLSQLVDEHITII 154
>gi|149195468|ref|ZP_01872548.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
gi|149134383|gb|EDM22879.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
Length = 873
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK NRP P+ + L IK M K+IE+PG E+DD+I LA ++ +D
Sbjct: 65 FRKEIFKDYKANRPEAPEDLKVQLPIAIGLIKEMGFKMIEMPGFESDDIIASLAKKAAND 124
Query: 63 GFKIQVVSPNKD 74
G K+++VS +KD
Sbjct: 125 GIKVKIVSHDKD 136
>gi|381197154|ref|ZP_09904495.1| DNA polymerase I [Acinetobacter lwoffii WJ10621]
Length = 921
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L P YK +RP P+ + + + YL A I+A+ I + +PG EADD+IG LA R+
Sbjct: 63 TFRHVLSPIYKGDRPSMPEELSEQIPYLHALIRALGIPLYMLPGAEADDIIGTLAKRAEA 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
G ++ + + +KD +Q+++ + L
Sbjct: 123 AGQQVLISTGDKDMAQLVTDKVTL 146
>gi|452126208|ref|ZP_21938791.1| DNA polymerase I [Bordetella holmesii F627]
gi|452129576|ref|ZP_21942151.1| DNA polymerase I [Bordetella holmesii H558]
gi|451921303|gb|EMD71448.1| DNA polymerase I [Bordetella holmesii F627]
gi|451923211|gb|EMD73353.1| DNA polymerase I [Bordetella holmesii H558]
Length = 906
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP YK++RPP P + ++ + A+++A+ V+ V GVEADD+I LA R+ ++
Sbjct: 65 FRDDLYPEYKSHRPPIPPDLAAQIEPIHAAVRALGWPVMAVEGVEADDIIATLARRATEE 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G V + +KD +Q+++ + L+
Sbjct: 125 GLHTVVSTGDKDLAQLVNPQVTLV 148
>gi|333891503|ref|YP_004465378.1| DNA polymerase I [Alteromonas sp. SN2]
gi|332991521|gb|AEF01576.1| DNA polymerase I [Alteromonas sp. SN2]
Length = 935
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK NRPP P+ + ++ L IKAM + +I GVEADDVIG LA R+ +
Sbjct: 68 TFRDDIYEEYKANRPPMPEELRSQIEPLHTIIKAMGLPLIVESGVEADDVIGTLACRATE 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + +KD +Q+++ ++ L+
Sbjct: 128 HGIDTLISTGDKDMAQLVNENVTLI 152
>gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
Length = 920
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH + +YK R TP+ + ++ LKA + A + + +PG EADD+IG LAVR+
Sbjct: 22 TFRHEITDTYKAGRAETPEEFTEDVENLKALLSAFQLPIFSLPGYEADDMIGTLAVRAKG 81
Query: 62 DGFKIQVVSPNKD 74
G++++++S ++D
Sbjct: 82 KGYRVKILSGDQD 94
>gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046]
gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046]
Length = 921
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L P YK +RP P+ + + + YL A I+A+ I + +PG EADD+IG LA R+
Sbjct: 63 TFRHVLSPIYKGDRPSMPEELSEQIPYLHALIRALGIPLYMLPGAEADDIIGTLAKRAEA 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
G ++ + + +KD +Q+++ + L
Sbjct: 123 AGQQVLISTGDKDMAQLVTDKVTL 146
>gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
Length = 933
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++P YK RPP PD + + L ++ M V+ +P VEADDVIG LA + +
Sbjct: 65 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMAGE 124
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + V + +KD +Q+++ + L+
Sbjct: 125 AGWNVVVSTGDKDMAQLVNERVTLV 149
>gi|338810642|ref|ZP_08622884.1| DNA polymerase I [Acetonema longum DSM 6540]
gi|337277387|gb|EGO65782.1| DNA polymerase I [Acetonema longum DSM 6540]
Length = 872
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FR+ Y +YK +R TP + + Y++ ++A IKV+E G EADD+IG +A ++
Sbjct: 63 ITFRNEFYQAYKAHRQATPSELAEQFSYVRRLVEAFGIKVLEEAGYEADDIIGTVACQAE 122
Query: 61 DDGFKIQVVSPNKDS 75
GF + +V+ +KD+
Sbjct: 123 QHGFDVLIVTGDKDA 137
>gi|329897110|ref|ZP_08271855.1| DNA polymerase I [gamma proteobacterium IMCC3088]
gi|328921434|gb|EGG28823.1| DNA polymerase I [gamma proteobacterium IMCC3088]
Length = 908
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR ++P YK RPP PD + ++ L A +KA+ +I PGVEADDVIG LA ++ +
Sbjct: 66 TFRDEMFPDYKAQRPPMPDELRTQIEPLHAIVKALGYPLICEPGVEADDVIGTLAKQASE 125
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL------RIAPRG 91
G + V + +KD +Q++ + L+ R+ P G
Sbjct: 126 QGMDVIVSTGDKDMAQLVDQHVTLVNTMSDTRLDPAG 162
>gi|261878884|ref|ZP_06005311.1| DNA-directed DNA polymerase I, partial [Prevotella bergensis DSM
17361]
gi|270334524|gb|EFA45310.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
Length = 661
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +P YK R TP+ + + +++ +KAM I +++V G EADDVIG LA ++ +
Sbjct: 65 FRHEAFPPYKAQREATPEDIKLSVPHIQDILKAMHIPILQVNGFEADDVIGTLATQAAEK 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR 90
G + +++P+KD Q++ + + R PR
Sbjct: 125 GIETYMLTPDKDYGQLIRQHVYMFR--PR 151
>gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114]
gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114]
Length = 935
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++P YK RPP PD + + L ++ M V+ +P VEADDVIG LA + +
Sbjct: 66 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMAGE 125
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + V + +KD +Q+++ + L+
Sbjct: 126 AGWNVVVSTGDKDMAQLVNERVTLV 150
>gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 943
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK +R P P+ +V+ ++ + A +KAM V+ V GVEADDVIG LA ++ +
Sbjct: 65 TFRDEMYSEYKAHRSPMPEDLVKQIEPIHAMVKAMGWPVLMVSGVEADDVIGTLACQATE 124
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G++ + + +KD +Q+++ S+ L+
Sbjct: 125 AGWETIISTGDKDLAQLVNPSVTLI 149
>gi|91206022|ref|YP_538377.1| DNA polymerase I [Rickettsia bellii RML369-C]
gi|157826616|ref|YP_001495680.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
gi|123388086|sp|Q1RH76.1|DPO1_RICBR RecName: Full=DNA polymerase I; Short=POL I
gi|91069566|gb|ABE05288.1| DNA polymerase I [Rickettsia bellii RML369-C]
gi|157801920|gb|ABV78643.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
Length = 871
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRPP P+ ++ L ++ + ++ ++E G EADD+I A ++
Sbjct: 66 NFRHEIYPEYKANRPPPPEDLIAQLPLVRDVARNLNFPILEKNGFEADDIIATFAAKTAS 125
Query: 62 DGFKIQVVSPNKD 74
G ++ V+S +KD
Sbjct: 126 IGEEVVVISSDKD 138
>gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem]
gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem]
Length = 892
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FR+ L+P+YK R P+ + Q ++ +K ++A +I +E+PG EADD+IG +A +
Sbjct: 66 ITFRNELFPAYKATRSAMPEDLAQQIEPIKQMVRAFNIPALELPGFEADDIIGTIAKKCE 125
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLL 85
G VV+ +KD QI+S + LL
Sbjct: 126 AQGMACVVVTGDKDLMQIVSDRVTLL 151
>gi|349610431|ref|ZP_08889780.1| hypothetical protein HMPREF1028_01755, partial [Neisseria sp.
GT4A_CT1]
gi|348609981|gb|EGY59691.1| hypothetical protein HMPREF1028_01755 [Neisseria sp. GT4A_CT1]
Length = 849
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++P YK RPP PD + + L ++ M V+ +P VEADDVIG LA + +
Sbjct: 65 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMAGE 124
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + V + +KD +Q+++ + L+
Sbjct: 125 AGWNVVVSTGDKDMAQLVNERVTLV 149
>gi|42520815|ref|NP_966730.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42410555|gb|AAS14664.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 858
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH LYP YK NR P+ + L+ +++A ++ E+ G EADD+I LA + +
Sbjct: 63 NFRHNLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIATLAAKYAN 122
Query: 62 -DGFKIQVVSPNKD-SQILSHSLCLL 85
FK+ VVS +KD Q+L+H++ +
Sbjct: 123 HQDFKVVVVSSDKDLFQLLNHNILIF 148
>gi|404379564|ref|ZP_10984620.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
gi|404294620|gb|EFG30551.2| DNA polymerase I [Simonsiella muelleri ATCC 29453]
Length = 916
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH L+P YK RPP PD + + L ++ M KV+++ VEADDVIG LAV++
Sbjct: 63 NFRHALFPDYKATRPPMPDDLRPQAEMLPELVELMGWKVLKINDVEADDVIGTLAVQAAA 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+ + + +KD +Q+++ + L+
Sbjct: 123 QNMNVIISTGDKDMAQLVNTQITLV 147
>gi|359428020|ref|ZP_09219063.1| DNA polymerase I [Acinetobacter sp. NBRC 100985]
gi|358236682|dbj|GAB00602.1| DNA polymerase I [Acinetobacter sp. NBRC 100985]
Length = 921
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P+ + Q + YL A IKA+ I + + G EADD+IG L R++ +
Sbjct: 64 FRHKLSPIYKGDRPSMPEELSQQIPYLHALIKALGIPLYFLAGAEADDIIGTLTKRALSE 123
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 124 GHHVLISTGDKD 135
>gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
Length = 929
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L ++AM + ++ VPGVEADDVIG LA+++
Sbjct: 68 TFRDELFAEYKSHRPPMPDDLRTQIEPLHQMVEAMGLPLLVVPGVEADDVIGTLALQAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G + + + +KD +Q+++ ++ L+
Sbjct: 128 EGRAVLISTGDKDMAQLVTPNITLI 152
>gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170]
gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170]
Length = 944
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R ++P YK NR TPD + + +++ +KAM I V+ G EADD+IG LA ++ +
Sbjct: 70 RTEMFPEYKANRLETPDAIKIAVPFIQEILKAMHIPVVVQEGWEADDIIGTLAKQAEKED 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+K+ +V+P+KD Q++S ++ + R A G
Sbjct: 130 YKVYMVTPDKDFGQLVSENIFMYRPARMG 158
>gi|419797919|ref|ZP_14323369.1| DNA-directed DNA polymerase [Neisseria sicca VK64]
gi|385696768|gb|EIG27236.1| DNA-directed DNA polymerase [Neisseria sicca VK64]
Length = 929
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++P YK RPP PD + + L ++ M V+ +P VEADDVIG LA + +
Sbjct: 65 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMAGE 124
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + V + +KD +Q+++ + L+
Sbjct: 125 AGWNVVVSTGDKDMAQLVNERVTLV 149
>gi|340363286|ref|ZP_08685627.1| DNA-directed DNA polymerase I [Neisseria macacae ATCC 33926]
gi|339886227|gb|EGQ75895.1| DNA-directed DNA polymerase I [Neisseria macacae ATCC 33926]
Length = 668
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++P YK RPP PD + + L ++ M V+ +P VEADDVIG LA + +
Sbjct: 88 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMAGE 147
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + V + +KD +Q+++ + L+
Sbjct: 148 AGWNVVVSTGDKDMAQLVNERVTLV 172
>gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
Length = 958
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++P YK RPP PD + + L ++ M V+ +P VEADDVIG LA + +
Sbjct: 94 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMAGE 153
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + V + +KD +Q+++ + L+
Sbjct: 154 AGWNVVVSTGDKDMAQLVNERVTLV 178
>gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
23834]
gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
23834]
Length = 928
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++P YK RPP PD + + L ++ M V+ +P VEADDVIG LA + +
Sbjct: 64 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMAGE 123
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + V + +KD +Q+++ + L+
Sbjct: 124 AGWNVVVSTGDKDMAQLVNERVTLV 148
>gi|358063715|ref|ZP_09150319.1| hypothetical protein HMPREF9473_02382 [Clostridium hathewayi
WAL-18680]
gi|356698041|gb|EHI59597.1| hypothetical protein HMPREF9473_02382 [Clostridium hathewayi
WAL-18680]
Length = 891
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH ++ +YK R P P+ + + + +K + AM I ++ + G EADD++G LA R
Sbjct: 63 TFRHKMFEAYKGTRKPMPEELREQVPLMKEVLAAMEIPIMTMAGYEADDILGTLAKRCAA 122
Query: 62 DGFKIQVVSPNKDSQILSHSLCLLRI 87
DG ++ V+S ++D L+ + +RI
Sbjct: 123 DGIEVSVISGDRDLLQLADTRIKIRI 148
>gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21]
gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21]
Length = 892
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FR+ L+P+YK R P+ + Q ++ +K ++A +I +E+PG EADD+IG +A +
Sbjct: 66 ITFRNELFPAYKATRSAMPEDLAQQIEPIKQMVRAFNIPALELPGFEADDIIGTIARKCE 125
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLL 85
G VV+ +KD QI+S + LL
Sbjct: 126 AQGMACVVVTGDKDLMQIVSDRVTLL 151
>gi|404497831|ref|YP_006721937.1| DNA polymerase I [Geobacter metallireducens GS-15]
gi|418067867|ref|ZP_12705197.1| DNA polymerase I [Geobacter metallireducens RCH3]
gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15]
gi|373558046|gb|EHP84411.1| DNA polymerase I [Geobacter metallireducens RCH3]
Length = 892
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR LYP YK NR PD +V + +K ++A +I V+E+ G EADD+IG +A +
Sbjct: 66 TFRTDLYPDYKANRSAMPDDLVPQIAPIKEMVRAFNIPVLELAGYEADDIIGTIARECEE 125
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + VV+ +KD QI+S + LL
Sbjct: 126 RGMEAVVVTGDKDLMQIVSERVTLL 150
>gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E]
gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E]
Length = 965
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + + +Q L I+A+ I ++ + GVEADDVIG LA+++
Sbjct: 78 FRDELFEQYKSHRPPMPDDLRKQIQPLHDIIRALGIPLLSIEGVEADDVIGTLALQASSA 137
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 138 GKKVLISTGDKDMAQLVDDNIMLI 161
>gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
Length = 929
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++P YK RPP PD + + L ++ M V+ +P VEADDVIG LA + +
Sbjct: 65 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMAGE 124
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + V + +KD +Q+++ + L+
Sbjct: 125 AGWNVVVSTGDKDMAQLVNERVTLV 149
>gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256]
gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256]
Length = 952
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++P YK RPP PD + + L ++ M V+ +P VEADDVIG LA + +
Sbjct: 88 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMAGE 147
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + V + +KD +Q+++ + L+
Sbjct: 148 AGWNVVVSTGDKDMAQLVNERVTLV 172
>gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
Length = 940
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FR LYP YK+NRPP P+ + + Y+ +KAM + +I VP VEADDV+G A ++
Sbjct: 67 SFRSDLYPEYKSNRPPMPEDLRIQVDYVHRIVKAMGLPLIIVPKVEADDVLGSYAKKAQS 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
GF + + +KD +Q+++ + L+
Sbjct: 127 LGFSSLICTGDKDLAQLVNDKVTLI 151
>gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1]
Length = 832
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y YK R PTP+ + L +K + + + +EVPG EADDV+ LA ++
Sbjct: 72 SFRHEAYEGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEK 131
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGF 92
+G+++++++ +KD Q+LS + +L P G+
Sbjct: 132 EGYEVRILTADKDLYQLLSDRIHVLH--PEGY 161
>gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Bermanella marisrubri]
gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65]
Length = 916
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ +YP YK +RPP PD + +Q + IKAM + ++ + VEADDVIG LA + D
Sbjct: 76 FRNDIYPEYKAHRPPMPDDLRVQIQPIHDIIKAMGLPLLVIDNVEADDVIGTLAHEATDQ 135
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q++S + L+
Sbjct: 136 GIETLVSTGDKDMAQLVSEHVQLI 159
>gi|99035969|ref|ZP_01315013.1| hypothetical protein Wendoof_01000149 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 529
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH LYP YK NR P+ + L+ +++A ++ E+ G EADD+I LA + +
Sbjct: 63 NFRHNLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIATLAAKYAN 122
Query: 62 -DGFKIQVVSPNKD-SQILSHSLCLL 85
FK+ VVS +KD Q+L+H++ +
Sbjct: 123 HQDFKVVVVSSDKDLFQLLNHNILIF 148
>gi|210612532|ref|ZP_03289350.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787]
gi|210151537|gb|EEA82544.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787]
Length = 872
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH ++ YK R P D + Q + +K ++AM +K IE G+EADD++G LA R +
Sbjct: 65 FRHEMFAEYKGTRKPMADELRQQVPVIKEVLQAMGVKTIEKAGLEADDLLGTLAKRCEEM 124
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRI 87
G ++ V+S ++D L+ +RI
Sbjct: 125 GMEVSVISGDRDLLQLATEHVKIRI 149
>gi|253987782|ref|YP_003039138.1| dna polymerase I polA [Photorhabdus asymbiotica]
gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica
ATCC 43949]
gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica]
Length = 929
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L ++AM + ++ VPGVEADDVIG LA+++
Sbjct: 68 TFRDELFAEYKSHRPPMPDDLRAQIEPLHQLVEAMGLPLLVVPGVEADDVIGTLALQAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G + + + +KD +Q+++ ++ L+
Sbjct: 128 EGRSVLISTGDKDMAQLVTPNITLI 152
>gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
Length = 949
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R ++ YK NR TP+ + + Y++ +KAM I +IE+ G EADD+IG +A ++
Sbjct: 70 RTEMFAEYKANRDETPEAIKIAVPYIQELLKAMHIPIIELAGCEADDLIGTIAKQAEKQN 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+K+ +V+P+KD +Q++S ++ + + A G
Sbjct: 130 YKVYMVTPDKDFAQLVSENIFMYKPARMG 158
>gi|345884856|ref|ZP_08836256.1| hypothetical protein HMPREF0666_02432 [Prevotella sp. C561]
gi|345042355|gb|EGW46456.1| hypothetical protein HMPREF0666_02432 [Prevotella sp. C561]
Length = 920
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 59/97 (60%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +P YK R TP+ + + +K ++AM I +++V G EADD+IG +A R D
Sbjct: 65 FRHDAFPEYKAQREETPEDIKLSVPLIKQILEAMHIPILQVDGFEADDIIGTVATRFGSD 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G + +++P+KD Q++ ++ + R PR G+E++
Sbjct: 125 GIETFMLTPDKDYGQLIGPNVFMYR--PRHGGGYEII 159
>gi|254466222|ref|ZP_05079633.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
gi|206687130|gb|EDZ47612.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
Length = 936
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
M+FR+ +Y YK NRPP P+ +V + + KA +I EV G EADD+I LA ++
Sbjct: 75 MSFRNEMYDQYKANRPPAPEDLVPQFPLTREATKAFNIACKEVEGYEADDIIATLACQAR 134
Query: 61 DDGFKIQVVSPNKD 74
+ G ++ ++S +KD
Sbjct: 135 EAGGQVTIISSDKD 148
>gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
Length = 920
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK +RPP PD + + ++ + IKAM + +I + GVEADDVIG A ++ +
Sbjct: 68 TFRDDIYPEYKAHRPPMPDDLREQIEPIHNIIKAMGLPLIIIDGVEADDVIGTYARQATE 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 128 QGLDVIVSTGDKDMAQLVNKHITLV 152
>gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
Length = 929
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ +PGVEADDVIG LA+ +
Sbjct: 68 TFRDELFEEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLAIPGVEADDVIGTLALEAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGRAVLISTGDKDMAQLVTPDITLI 152
>gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1]
gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1]
Length = 943
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R ++P YK NR TP+ + + Y+++ +KAM I VI G EADD+IG L+ ++ +G
Sbjct: 70 RVEVFPEYKANRQETPEPITLAIPYIESILKAMKIPVIVKEGYEADDIIGTLSKKAEKEG 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLR 86
++ +V+P+KD +Q++S ++ + R
Sbjct: 130 YQTFMVTPDKDFAQLVSENIFMYR 153
>gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
gi|451967432|ref|ZP_21920674.1| DNA polymerase I [Edwardsiella tarda NBRC 105688]
gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
gi|451313753|dbj|GAC66036.1| DNA polymerase I [Edwardsiella tarda NBRC 105688]
Length = 930
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + + + L ++AM + ++ VPGVEADDVIG LA R+
Sbjct: 68 TFRDELFAEYKSHRPPMPDDLREQIAPLHQMVQAMGLPLLVVPGVEADDVIGTLARRAEQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRHVLISTGDKDMAQLVTPNITLI 152
>gi|220917745|ref|YP_002493049.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955599|gb|ACL65983.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
Length = 897
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH + P YK NRP PD + ++ +A+++ VIE PG EADD+I LA R+
Sbjct: 63 SFRHDIDPEYKANRPEAPDDLASQFPLVRDVARALNVPVIEEPGFEADDIIATLAGRARA 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
G+++ VV+ +KD +Q++ L L
Sbjct: 123 AGWEVVVVTGDKDFAQLVDGGLSL 146
>gi|24376141|ref|NP_720184.1| DNA polymerase I PolA [Shewanella oneidensis MR-1]
gi|24351181|gb|AAN57628.1| DNA polymerase I PolA [Shewanella oneidensis MR-1]
Length = 922
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ LY YK +RPP PD + ++ L I+A+ + +I +PGVEADDVIG +A R+ +
Sbjct: 69 FRNDLYQEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGTIARRASRE 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
+ + + +KD +Q++ ++ L+
Sbjct: 129 NRAVLISTGDKDMAQLVDENITLI 152
>gi|407008392|gb|EKE23776.1| hypothetical protein ACD_6C00333G0001 [uncultured bacterium]
Length = 920
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L P YK +RP P + + + YL A I+A+ I + +PG EADD+IG LA R+
Sbjct: 63 TFRHELSPIYKGDRPSMPTELSEQIPYLHALIRALGIPLHTLPGAEADDIIGTLAKRAEA 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
G ++ + + +KD +Q+++ + L
Sbjct: 123 MGHQVLISTGDKDMAQLVTEKVTL 146
>gi|387876361|ref|YP_006306665.1| DNA polymerase I [Mycobacterium sp. MOTT36Y]
gi|443306118|ref|ZP_21035906.1| DNA polymerase I [Mycobacterium sp. H4Y]
gi|386789819|gb|AFJ35938.1| DNA polymerase I [Mycobacterium sp. MOTT36Y]
gi|442767682|gb|ELR85676.1| DNA polymerase I [Mycobacterium sp. H4Y]
Length = 886
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 62 FRSERYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDLIATLATQAENE 121
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++DS Q++S ++ +L
Sbjct: 122 GYRVLVVTGDRDSLQLVSENVTVL 145
>gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703]
gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703]
Length = 931
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM ++ VPGVEADDVIG LA ++ +
Sbjct: 68 TFRDELFEDYKSHRPPMPDDLRAQIEPLHNMVKAMGFPLLVVPGVEADDVIGTLAQQAAN 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G + + + +KD +Q+++ + L+
Sbjct: 128 EGKPVLISTGDKDMAQLVTPDITLI 152
>gi|292486521|ref|YP_003529387.1| DNA polymerase I [Erwinia amylovora CFBP1430]
gi|428783441|ref|ZP_19000937.1| DNA polymerase I [Erwinia amylovora ACW56400]
gi|291551934|emb|CBA18971.1| DNA polymerase I [Erwinia amylovora CFBP1430]
gi|312170589|emb|CBX78852.1| DNA polymerase I [Erwinia amylovora ATCC BAA-2158]
gi|426277932|gb|EKV55654.1| DNA polymerase I [Erwinia amylovora ACW56400]
Length = 891
Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ +PGVEADDVIG LA+ +
Sbjct: 30 TFRDELFEEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLAIPGVEADDVIGTLALEAEK 89
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 90 AGRAVLISTGDKDMAQLVTPDITLI 114
>gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
43183]
gi|167698145|gb|EDS14724.1| DNA-directed DNA polymerase [Bacteroides stercoris ATCC 43183]
Length = 952
Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A I ++EVPG EADDVIG LA +
Sbjct: 69 FRHEAYKQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGTLATEAGRQ 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++S ++ + R P+ GFE++
Sbjct: 129 GIVTYMMTPDKDYGQLVSENVFMYR--PKHSGGFEVM 163
>gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis]
Length = 920
Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L P YK +RP P + + + YL A I+A+ I + +PG EADD+IG LA R+
Sbjct: 63 TFRHELSPIYKGDRPSMPTELSEQIPYLHALIRALGIPLHTLPGAEADDIIGTLAKRAEA 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
G ++ + + +KD +Q+++ + L
Sbjct: 123 MGHQVLISTGDKDMAQLVTEKVTL 146
>gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
Length = 832
Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y YK R PTP+ + L +K + + + +EVPG EADDV+ LA ++
Sbjct: 72 SFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEK 131
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGF 92
+G+++++++ +KD Q+LS + +L P G+
Sbjct: 132 EGYEVRILTADKDLYQLLSDRIHVLH--PEGY 161
>gi|375107040|ref|ZP_09753301.1| DNA polymerase I [Burkholderiales bacterium JOSHI_001]
gi|374667771|gb|EHR72556.1| DNA polymerase I [Burkholderiales bacterium JOSHI_001]
Length = 927
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR P PD + Q + + ++ + V+EVPG+EADD IG LA D
Sbjct: 69 FRDDWYPEYKANRAPMPDDLRQQIAPIHEVVRLLGWPVLEVPGIEADDAIGTLARVGADS 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G ++ + + +KD +Q+++ + L+
Sbjct: 129 GHRVIISTGDKDLAQLVNEQVTLI 152
>gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145]
gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145]
Length = 920
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH L P YK +RP P + + + YL A I+A+ I + +PG EADD+IG LA R+
Sbjct: 63 TFRHELSPIYKGDRPSMPTELSEQIPYLHALIRALGIPLHTLPGAEADDIIGTLAKRAEA 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
G ++ + + +KD +Q+++ + L
Sbjct: 123 MGHQVLISTGDKDMAQLVTEKVTL 146
>gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950]
gi|379747708|ref|YP_005338529.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950]
gi|379755010|ref|YP_005343682.1| DNA polymerase I [Mycobacterium intracellulare MOTT-02]
gi|379762501|ref|YP_005348898.1| DNA polymerase I [Mycobacterium intracellulare MOTT-64]
gi|378800072|gb|AFC44208.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950]
gi|378805226|gb|AFC49361.1| DNA polymerase I [Mycobacterium intracellulare MOTT-02]
gi|378810443|gb|AFC54577.1| DNA polymerase I [Mycobacterium intracellulare MOTT-64]
Length = 908
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 84 FRSERYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDLIATLATQAENE 143
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++DS Q++S ++ +L
Sbjct: 144 GYRVLVVTGDRDSLQLVSENVTVL 167
>gi|427419337|ref|ZP_18909520.1| DNA polymerase I [Leptolyngbya sp. PCC 7375]
gi|425762050|gb|EKV02903.1| DNA polymerase I [Leptolyngbya sp. PCC 7375]
Length = 958
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH SYK RP TP+ ++ ++ LK + + + ++ PG EADDVIG LA ++
Sbjct: 72 TFRHEAADSYKEGRPETPEDFIEDVENLKQLLASFKLPILTAPGFEADDVIGTLATKAEK 131
Query: 62 DGFKIQVVSPNKD 74
+G+ ++++S ++D
Sbjct: 132 EGYAVRILSGDQD 144
>gi|406031212|ref|YP_006730103.1| DNA polymerase I [Mycobacterium indicus pranii MTCC 9506]
gi|405129759|gb|AFS15014.1| DNA polymerase I [Mycobacterium indicus pranii MTCC 9506]
Length = 908
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 84 FRSERYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDLIATLATQAENE 143
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++DS Q++S ++ +L
Sbjct: 144 GYRVLVVTGDRDSLQLVSENVTVL 167
>gi|451345941|ref|YP_007444572.1| DNA polymerase I [Bacillus amyloliquefaciens IT-45]
gi|449849699|gb|AGF26691.1| DNA polymerase I [Bacillus amyloliquefaciens IT-45]
Length = 879
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH+ + YK R TP + + + +++ + A +I E+P EADD+IG LAV + D
Sbjct: 67 FRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYNISRYELPEYEADDIIGTLAVSAEKD 126
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF+++VVS +KD L+ + I +G
Sbjct: 127 GFEVKVVSGDKDLTQLATGKTTVSITRKG 155
>gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
Length = 914
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ LY YK NR PD +V+ ++ + + +++V GVEADDVIG LAV++ +D
Sbjct: 65 FRNDLYQEYKANRAAMPDDLVEQTGHILELVDMLGWPILQVEGVEADDVIGTLAVKAHED 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
GF V + +KD SQ++ + L+
Sbjct: 125 GFDTIVSTGDKDMSQLVDDKVTLV 148
>gi|197122953|ref|YP_002134904.1| DNA polymerase I [Anaeromyxobacter sp. K]
gi|196172802|gb|ACG73775.1| DNA polymerase I [Anaeromyxobacter sp. K]
Length = 897
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH + P YK NRP PD + ++ +A+++ VIE PG EADD+I LA R+
Sbjct: 63 SFRHDIDPEYKANRPEAPDDLASQFPLVRDVARALNVPVIEEPGFEADDIIATLAGRARA 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
G+++ VV+ +KD +Q++ L L
Sbjct: 123 AGWEVVVVTGDKDFAQLVDGGLSL 146
>gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71]
gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71]
Length = 909
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP PD + + ++ + + ++ M + ++ PGVEADDVIG LA + +
Sbjct: 66 TFRDDIYPEYKANRPPMPDDLREQIEPIHSIVRGMGLPLLCEPGVEADDVIGTLAKEASE 125
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 126 AGCSVIVSTGDKDMAQLVNDRVTLV 150
>gi|453065753|gb|EMF06713.1| DNA polymerase I [Serratia marcescens VGH107]
Length = 932
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L + +KAM + ++ PGVEADDVIG LA+ +
Sbjct: 69 FRDDLFAEYKSHRPPMPDDLRAQIEPLHSMVKAMGLPLLVTPGVEADDVIGTLALEAEKA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 129 GHAVLISTGDKDMAQLVTPNVTLI 152
>gi|448244558|ref|YP_007408611.1| DNA polymerase I [Serratia marcescens WW4]
gi|445214922|gb|AGE20592.1| DNA polymerase I [Serratia marcescens WW4]
Length = 932
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L + +KAM + ++ PGVEADDVIG LA+ +
Sbjct: 69 FRDDLFAEYKSHRPPMPDDLRAQIEPLHSMVKAMGLPLLVTPGVEADDVIGTLALEAEKA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 129 GHAVLISTGDKDMAQLVTPNVTLI 152
>gi|427430986|ref|ZP_18920682.1| DNA polymerase I [Caenispirillum salinarum AK4]
gi|425878163|gb|EKV26882.1| DNA polymerase I [Caenispirillum salinarum AK4]
Length = 941
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FR+ YP YK +RPP PD ++ + ++ +++A ++ +E+ G EADD+I ++ +
Sbjct: 63 SFRNDFYPEYKAHRPPPPDELIPQFELIREAVRAFNLPSVEMDGFEADDLIATYTRQARE 122
Query: 62 DGFKIQVVSPNKDSQILSH 80
G K+ +VS +KD L H
Sbjct: 123 AGAKVTIVSSDKDLMQLVH 141
>gi|373460588|ref|ZP_09552339.1| DNA polymerase I [Prevotella maculosa OT 289]
gi|371955206|gb|EHO73010.1| DNA polymerase I [Prevotella maculosa OT 289]
Length = 920
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 60/97 (61%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +P+YK R TP+ + Q + +K ++A I +++ G EADDVIG LA+++ +
Sbjct: 65 FRHEAFPAYKAQRQETPEDITQSVPIIKEILRAFHIPILQADGFEADDVIGTLAIKAAEK 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
+ +++P+KD Q++ ++ + R PR G++++
Sbjct: 125 NVETYMLTPDKDYGQLIRKNVFMYR--PRHGGGYDVI 159
>gi|378581671|ref|ZP_09830315.1| DNA polymerase I [Pantoea stewartii subsp. stewartii DC283]
gi|377815585|gb|EHT98696.1| DNA polymerase I [Pantoea stewartii subsp. stewartii DC283]
Length = 927
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L ++AM + ++ V GVEADDVIG LA+ +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRSQIEPLHEMVRAMGLPLLAVSGVEADDVIGTLALEAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + + + +KD +Q+++ ++ L+
Sbjct: 128 KGYSVLISTGDKDMAQLVTPAITLI 152
>gi|384439822|ref|YP_005654546.1| DNA polymerase I, thermostable [Thermus sp. CCB_US3_UF1]
gi|359290955|gb|AEV16472.1| DNA polymerase I, thermostable [Thermus sp. CCB_US3_UF1]
Length = 833
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y +YK R PTP+ + L +K + + + +EVPG EADDV+ LA R+
Sbjct: 72 SFRHQAYGAYKAGRAPTPEDFPRQLSLIKELVDLLGLVRLEVPGYEADDVLATLARRAEG 131
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+G+++++++ ++D Q+LS + +L P G
Sbjct: 132 EGYEVRILTADRDLYQLLSERVSILH--PEG 160
>gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 933
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRPP P+ + +Q + + A+ I ++ + GVEADDVIG LA++ D
Sbjct: 63 FRDDLYADYKANRPPMPEDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 63 GFKIQVVSPNKD 74
G ++ + + +KD
Sbjct: 123 GLQVTISTGDKD 134
>gi|238923922|ref|YP_002937438.1| DNA polymerase I [Eubacterium rectale ATCC 33656]
gi|238875597|gb|ACR75304.1| DNA polymerase I [Eubacterium rectale ATCC 33656]
Length = 903
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH ++ +YK R P + + Q + +K + AM IK++E G EADD++G L+VR+
Sbjct: 64 TFRHRMFDAYKGTRKPMDEELRQQVPMIKEMLTAMGIKIVEKEGYEADDILGTLSVRAEK 123
Query: 62 DGFKIQVVSPNKDSQILSHSLCLLRI 87
G + ++S ++D L+ ++RI
Sbjct: 124 AGMDVAIISGDRDLLQLATDHVMVRI 149
>gi|237756074|ref|ZP_04584652.1| DNA polymerase I, thermostable [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691767|gb|EEP60797.1| DNA polymerase I, thermostable [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 299
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
RH + YK R TPD + Q + LK I+ + IK++E+PG EADD+I L+ ++
Sbjct: 64 TLRHEKFSEYKATRKETPDPLKQQIPILKEIIQLLGIKILEIPGYEADDIIATLSKKAEI 123
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G++ +V+P+KD +Q++S ++ +
Sbjct: 124 EGYEAIIVTPDKDMNQLISDNIKIF 148
>gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
Length = 936
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH LY YK NRP P+ ++ L+ + ++A I +++ PG EADD+IG AVR +
Sbjct: 94 TFRHELYAPYKANRPEPPEDLIAQLELIFKLVEAFRIPILKQPGYEADDLIGS-AVRQFE 152
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLR 86
+I +V+P+KD +Q+++ + +L+
Sbjct: 153 KQCEIVIVTPDKDLAQLVNEGVSILK 178
>gi|78187499|ref|YP_375542.1| DNA polymerase A [Chlorobium luteolum DSM 273]
gi|78167401|gb|ABB24499.1| DNA polymerase A [Chlorobium luteolum DSM 273]
Length = 945
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH ++P YK NR P+ M ++ L ++A+ I ++ PG EADD+IG A + +D
Sbjct: 93 FRHDIFPEYKANRTAPPEEMTGQIEPLFELLRALGIPILRTPGFEADDLIGT-AAKEFED 151
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRGFEL 94
I +V+P+KD +Q++ + LLR + EL
Sbjct: 152 ACSIYIVTPDKDLAQLVHDGVKLLRPSKNQNEL 184
>gi|291525363|emb|CBK90950.1| DNA polymerase I [Eubacterium rectale DSM 17629]
gi|291527050|emb|CBK92636.1| DNA polymerase I [Eubacterium rectale M104/1]
Length = 903
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH ++ +YK R P + + Q + +K + AM IK++E G EADD++G L+VR+
Sbjct: 64 TFRHRMFDAYKGTRKPMDEELRQQVPMIKEMLTAMGIKIVEKEGYEADDILGTLSVRAEK 123
Query: 62 DGFKIQVVSPNKDSQILSHSLCLLRI 87
G + ++S ++D L+ ++RI
Sbjct: 124 AGMDVAIISGDRDLLQLATDHVMVRI 149
>gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36]
gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36]
Length = 931
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR+ +YP YK NRPP PD + ++ + ++KA+ + +I + GVEADDVIG +A ++
Sbjct: 68 TFRNEMYPEYKANRPPMPDDLRCQIEPVHKAVKALGLPLICISGVEADDVIGTIAKQASA 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G + + + +KD +Q++ ++ L+
Sbjct: 128 EGRAVLISTGDKDMAQLVDENVTLI 152
>gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54]
gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54]
Length = 889
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +YP YK NRP P+ + + + Y+K +KA + ++E GVEADD+I +A + +
Sbjct: 65 FRHEMYPKYKANRPMMPEDLQEQIPYIKEFVKASGLLLLEEAGVEADDIIASIAKKFASE 124
Query: 63 GFKIQVVSPNKD 74
+ VVS +KD
Sbjct: 125 ECAVTVVSGDKD 136
>gi|421727940|ref|ZP_16167098.1| DNA polymerase I, partial [Klebsiella oxytoca M5al]
gi|410371423|gb|EKP26146.1| DNA polymerase I, partial [Klebsiella oxytoca M5al]
Length = 275
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ VPGVEADDVIG LA +
Sbjct: 30 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLMAVPGVEADDVIGTLAREAEK 89
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 90 VGRPVLISTGDKDMAQLVTPGITLI 114
>gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568]
gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568]
Length = 934
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L +KAM + ++ PGVEADDVIG LA+ +
Sbjct: 69 FRDELFAEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLVTPGVEADDVIGTLALEAEKA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 129 GHAVLISTGDKDMAQLVTSNVTLI 152
>gi|346306396|ref|ZP_08848554.1| hypothetical protein HMPREF9457_00263 [Dorea formicigenerans
4_6_53AFAA]
gi|345900201|gb|EGX70029.1| hypothetical protein HMPREF9457_00263 [Dorea formicigenerans
4_6_53AFAA]
Length = 875
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y +YK R P D + Q + +K + +M IK IE G+EADD++G L+ R +
Sbjct: 68 TFRHKMYDAYKGTRKPMADELRQQVPVIKEVLCSMGIKTIECAGLEADDLLGTLSRRCEE 127
Query: 62 DGFKIQVVSPNKDSQILSHSLCLLRI 87
G ++ V+S ++D L+ +RI
Sbjct: 128 KGMEVSVISGDRDLLQLATQHVKIRI 153
>gi|374367613|ref|ZP_09625674.1| DNA polymerase I [Cupriavidus basilensis OR16]
gi|373100916|gb|EHP41976.1| DNA polymerase I [Cupriavidus basilensis OR16]
Length = 937
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR LYP+YK +RP P+ + + ++ + +++A+ ++ V GVEADDVIG LA R+
Sbjct: 67 TFRDDLYPAYKEHRPSMPEDLAKQIEPIHEAVRALGWPIVVVEGVEADDVIGTLARRATA 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G + V + +KD +Q++ + L+
Sbjct: 127 EGMRTVVSTGDKDLAQLVDDHVTLV 151
>gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
Length = 930
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++P YK RPP PD + + L ++ M V+ +P VEADDVIG LA + +
Sbjct: 66 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAKMASE 125
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + V + +KD +Q+++ + L+
Sbjct: 126 AGWNVVVSTGDKDMAQLVNERVTLV 150
>gi|118828|sp|P19821.1|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq
polymerase 1
gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus]
Length = 832
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y YK R PTP+ + L +K + + + +EVPG EADDV+ LA ++
Sbjct: 72 SFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEK 131
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGF 92
+G+++++++ +KD Q+LS + +L P G+
Sbjct: 132 EGYEVRILTADKDLYQLLSDRIHVLH--PEGY 161
>gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
Length = 930
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++P YK RPP PD + + L ++ M V+ +P VEADDVIG LA + +
Sbjct: 66 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAKMAGE 125
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + V + +KD +Q+++ + L+
Sbjct: 126 AGWNVVVSTGDKDMAQLVNERVTLV 150
>gi|50118986|ref|YP_048153.1| DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
gi|49609512|emb|CAG72945.1| putative DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
Length = 929
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ +YK +RPP P+ + + ++ L + +KAM + ++ V GVEADDVIG LAV++
Sbjct: 68 TFRDELFENYKAHRPPMPEDLREQIEPLHSMVKAMGLPLLAVSGVEADDVIGTLAVQAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ S+ L+
Sbjct: 128 AGKSVLISTGDKDMAQLVTPSVTLI 152
>gi|239946695|ref|ZP_04698448.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239920971|gb|EER20995.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 875
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRPP P+ ++ L ++ +++ ++E G EADD+I A ++V
Sbjct: 66 NFRHHIYPEYKANRPPPPEDLIVQLPLVRDVASSLNFPILEKNGYEADDIIATFATKTVM 125
Query: 62 DGFKIQVVSPNKD-SQILSHSL 82
G ++ ++S +KD Q++S ++
Sbjct: 126 LGEEVIIISSDKDLLQLMSENI 147
>gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703]
gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703]
Length = 938
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++P YK RPP PD + + L ++ M V+ +P VEADDVIG LA + +
Sbjct: 67 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAKMASE 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + V + +KD +Q+++ + L+
Sbjct: 127 AGWNVVVSTGDKDMAQLVNERVTLV 151
>gi|384097731|ref|ZP_09998851.1| DNA polymerase I [Imtechella halotolerans K1]
gi|383836613|gb|EID76020.1| DNA polymerase I [Imtechella halotolerans K1]
Length = 942
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R ++ +YK NR TP+ + + Y++ +KAM I VIE+ G EADD+IG L+ ++ G
Sbjct: 69 RLEMFEAYKANRDETPEAIKIAVPYIQEILKAMHIPVIEMSGYEADDIIGTLSKQAEKQG 128
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+ +V+P+KD +Q++S ++ + R A G
Sbjct: 129 YITYMVTPDKDFAQLVSENIFVYRPARMG 157
>gi|336430765|ref|ZP_08610704.1| hypothetical protein HMPREF0994_06710 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336016858|gb|EGN46634.1| hypothetical protein HMPREF0994_06710 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 882
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH LY YK R P P+ + + + +K +KAM + +E G+EADD++G LA + D
Sbjct: 65 FRHELYKEYKGTRKPMPEELREQVPVIKEVLKAMGVCTVEKAGLEADDILGTLAKKGEKD 124
Query: 63 GFKIQVVSPNKD 74
G ++ +VS ++D
Sbjct: 125 GMEVALVSGDRD 136
>gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct]
gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct]
Length = 829
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y YK R PTP+ + L +K + + + +EVPG EADDV+ LA ++
Sbjct: 69 SFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEK 128
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGF 92
+G+++++++ +KD Q+LS + +L P G+
Sbjct: 129 EGYEVRILTADKDLYQLLSDRIHVLH--PEGY 158
>gi|227541511|ref|ZP_03971560.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227182793|gb|EEI63765.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 887
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ L+P YK R PTP+ ++ LK + AM + +E PG EADDVI LA +
Sbjct: 74 FRNELFPEYKAQRAPTPEEFKGQVEILKDILHAMGVTTVEKPGYEADDVIATLATAATKQ 133
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G K +V+ ++DS Q+++ + +L
Sbjct: 134 GMKTLIVTGDRDSFQLVNDDVTVL 157
>gi|227488114|ref|ZP_03918430.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227091976|gb|EEI27288.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 887
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ L+P YK R PTP+ ++ LK + AM + +E PG EADDVI LA +
Sbjct: 74 FRNELFPEYKAQRAPTPEEFKGQVEILKDILHAMGVTTVEKPGYEADDVIATLATAATKQ 133
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G K +V+ ++DS Q+++ + +L
Sbjct: 134 GMKTLIVTGDRDSFQLVNDDVTVL 157
>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
gi|254039954|gb|ACT56750.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
Length = 976
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FR+ +YP YK NRP P+ ++ L ++ + +A I IE+ G EADD+I +
Sbjct: 70 VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAE 129
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCL 84
+GF + ++S +KD Q++S + CL
Sbjct: 130 KEGFAVTIISTDKDLMQLVSPTTCL 154
>gi|421730686|ref|ZP_16169812.1| DNA polymerase I [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|407074840|gb|EKE47827.1| DNA polymerase I [Bacillus amyloliquefaciens subsp. plantarum M27]
Length = 879
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH+ + YK R TP + + + +++ + A +I E+P EADD+IG LAV + D
Sbjct: 67 FRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYNISRYELPEYEADDIIGTLAVSAEKD 126
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF+++VVS +KD L+ + I +G
Sbjct: 127 GFEVKVVSGDKDLTQLATGKTTVAITRKG 155
>gi|384266458|ref|YP_005422165.1| DNA polymerase I [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387899498|ref|YP_006329794.1| DNA polymerase I [Bacillus amyloliquefaciens Y2]
gi|380499811|emb|CCG50849.1| DNA polymerase I [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387173608|gb|AFJ63069.1| DNA polymerase I [Bacillus amyloliquefaciens Y2]
Length = 879
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH+ + YK R TP + + + +++ + A +I E+P EADD+IG LAV + D
Sbjct: 67 FRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYNISRYELPEYEADDIIGTLAVSAEKD 126
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF+++VVS +KD L+ + I +G
Sbjct: 127 GFEVKVVSGDKDLTQLATGKTTVAITRKG 155
>gi|375363320|ref|YP_005131359.1| DNA polymerase I [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|371569314|emb|CCF06164.1| DNA polymerase I [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
Length = 879
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH+ + YK R TP + + + +++ + A +I E+P EADD+IG LAV + D
Sbjct: 67 FRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYNISRYELPEYEADDIIGTLAVSAEKD 126
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF+++VVS +KD L+ + I +G
Sbjct: 127 GFEVKVVSGDKDLTQLATGKTTVAITRKG 155
>gi|407978365|ref|ZP_11159197.1| DNA polymerase I [Bacillus sp. HYC-10]
gi|407415133|gb|EKF36746.1| DNA polymerase I [Bacillus sp. HYC-10]
Length = 879
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + YK R TP + + + +++ + A +K E+P EADD+IG LAV + D
Sbjct: 67 FRHETFKEYKGGRQKTPPELSEQMPFIRELLDAYQVKRYELPQYEADDIIGTLAVEAEKD 126
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF++++ S +KD LS + I +G
Sbjct: 127 GFEVKIFSGDKDLTQLSTDRTTVAITKKG 155
>gi|385265800|ref|ZP_10043887.1| hypothetical protein MY7_2569 [Bacillus sp. 5B6]
gi|385150296|gb|EIF14233.1| hypothetical protein MY7_2569 [Bacillus sp. 5B6]
Length = 879
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH+ + YK R TP + + + +++ + A +I E+P EADD+IG LAV + D
Sbjct: 67 FRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYNISRYELPEYEADDIIGTLAVSAEKD 126
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF+++VVS +KD L+ + I +G
Sbjct: 127 GFEVKVVSGDKDLTQLATGKTTVAITRKG 155
>gi|375258171|ref|YP_005017341.1| DNA polymerase I [Klebsiella oxytoca KCTC 1686]
gi|365907649|gb|AEX03102.1| DNA polymerase I [Klebsiella oxytoca KCTC 1686]
Length = 929
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLMAVPGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 VGRPVLISTGDKDMAQLVTPGITLI 152
>gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302]
gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302]
Length = 920
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 59/97 (60%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +P YK R TP+ + + ++K ++A I +++V G EADDVIG LA ++ +
Sbjct: 65 FRHEAFPPYKAQRQETPEDITLSVPFIKDILRAFHIPILQVEGFEADDVIGTLATKAGKE 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ ++ + R PR G++++
Sbjct: 125 GIATYMLTPDKDYGQLIRENVFMYR--PRHGGGYDII 159
>gi|423111124|ref|ZP_17098819.1| DNA polymerase I [Klebsiella oxytoca 10-5243]
gi|376377141|gb|EHS89913.1| DNA polymerase I [Klebsiella oxytoca 10-5243]
Length = 929
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLMAVPGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 VGRPVLISTGDKDMAQLVTPGITLI 152
>gi|218296583|ref|ZP_03497311.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
gi|218243125|gb|EED09657.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
Length = 536
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y YK R PTP+ + L +K + + + +EVPG EADDV+ LA ++
Sbjct: 72 SFRHEAYEGYKARRAPTPEDFPRQLALIKELVDLLGLVRLEVPGYEADDVLASLAKKAEK 131
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGF 92
+G+++++++ +KD Q+LS + +L P G+
Sbjct: 132 EGYEVRILTADKDLYQLLSDRIHVLH--PEGY 161
>gi|443491266|ref|YP_007369413.1| DNA polymerase I PolA [Mycobacterium liflandii 128FXT]
gi|442583763|gb|AGC62906.1| DNA polymerase I PolA [Mycobacterium liflandii 128FXT]
Length = 899
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ +
Sbjct: 75 FRSERYPEYKANRSSTPDEFHGQIDITKEVLNALGITVLAAPGFEADDIIATLATQAEGE 134
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++DS Q++S + +L
Sbjct: 135 GYRVLVVTGDRDSLQLVSDDVTVL 158
>gi|397655103|ref|YP_006495805.1| DNA polymerase I [Klebsiella oxytoca E718]
gi|394343856|gb|AFN29977.1| DNA polymerase I [Klebsiella oxytoca E718]
Length = 891
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ VPGVEADDVIG LA +
Sbjct: 30 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLMAVPGVEADDVIGTLAREAEK 89
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 90 VGRPVLISTGDKDMAQLVTPGITLI 114
>gi|183982446|ref|YP_001850737.1| DNA polymerase I [Mycobacterium marinum M]
gi|183175772|gb|ACC40882.1| DNA polymerase I PolA [Mycobacterium marinum M]
Length = 899
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ +
Sbjct: 75 FRSERYPEYKANRSSTPDEFHGQIDITKEVLNALGITVLAAPGFEADDIIATLATQAEGE 134
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++DS Q++S + +L
Sbjct: 135 GYRVLVVTGDRDSLQLVSDDVTVL 158
>gi|423105652|ref|ZP_17093354.1| DNA polymerase I [Klebsiella oxytoca 10-5242]
gi|376379896|gb|EHS92645.1| DNA polymerase I [Klebsiella oxytoca 10-5242]
Length = 926
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLMAVPGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 VGRPVLISTGDKDMAQLVTPGITLI 152
>gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132]
gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132]
Length = 933
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRHT + YK NR P+ + + Y+K I+AM+I +E G EADDVIG LA ++ D
Sbjct: 68 FRHTEFVDYKANREEQPEDITLAVPYIKRLIQAMNIPCLEKDGYEADDVIGTLAKKASKD 127
Query: 63 GFKIQVVSPNKD 74
F++ + +P+KD
Sbjct: 128 EFEVFMYTPDKD 139
>gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
Length = 833
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y YK R PTP+ + L +K + + + +EVPG EADDV+ LA ++
Sbjct: 73 SFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEK 132
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGF 92
+G+++ +++ +KD Q+LS + +L P G+
Sbjct: 133 EGYEVHILTADKDLYQLLSDRIHVLH--PEGY 162
>gi|118617251|ref|YP_905583.1| DNA polymerase I [Mycobacterium ulcerans Agy99]
gi|118569361|gb|ABL04112.1| DNA polymerase I PolA [Mycobacterium ulcerans Agy99]
Length = 899
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ +
Sbjct: 75 FRSERYPEYKANRSSTPDEFHGQIDITKEVLNALGITVLAAPGFEADDIIATLATQAEGE 134
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++DS Q++S + +L
Sbjct: 135 GYRVLVVTGDRDSLQLVSDDVTVL 158
>gi|402844159|ref|ZP_10892532.1| DNA-directed DNA polymerase [Klebsiella sp. OBRC7]
gi|402275566|gb|EJU24714.1| DNA-directed DNA polymerase [Klebsiella sp. OBRC7]
Length = 891
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ VPGVEADDVIG LA +
Sbjct: 30 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLMAVPGVEADDVIGTLAREAEK 89
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 90 VGRPVLISTGDKDMAQLVTPGITLI 114
>gi|345875809|ref|ZP_08827598.1| DNA polymerase I [Neisseria weaveri LMG 5135]
gi|343968507|gb|EGV36735.1| DNA polymerase I [Neisseria weaveri LMG 5135]
Length = 907
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK RPP P + + L ++ M V+ VP VEADDVIG LA +
Sbjct: 44 NFRHKMYPDYKATRPPMPGELRPQAEMLPELVRLMGWPVLIVPDVEADDVIGTLAKQGEA 103
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + + + +KD +Q++S + L+
Sbjct: 104 AGWNVVISTGDKDMAQLVSEHVTLV 128
>gi|423117136|ref|ZP_17104827.1| DNA polymerase I [Klebsiella oxytoca 10-5245]
gi|376376437|gb|EHS89215.1| DNA polymerase I [Klebsiella oxytoca 10-5245]
Length = 929
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLMAVPGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 VGRPVLISTGDKDMAQLVTPGITLI 152
>gi|423126574|ref|ZP_17114253.1| DNA polymerase I [Klebsiella oxytoca 10-5250]
gi|376396830|gb|EHT09467.1| DNA polymerase I [Klebsiella oxytoca 10-5250]
Length = 929
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLMAVPGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 VGRPVLISTGDKDMAQLVTPGITLI 152
>gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
Length = 949
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R Y YK NR TP+ + + +++ +KAM I +IE GVEADD+IG LA ++ +
Sbjct: 75 RVEAYADYKANRDETPEAIRIAVPHIQEILKAMHIPIIEREGVEADDLIGTLAKQAEKED 134
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
FK+ +V+P+KD +Q++S ++ + + A G
Sbjct: 135 FKVFMVTPDKDYAQLVSENIFMYKPARMG 163
>gi|331000437|ref|ZP_08324112.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
11859]
gi|329571769|gb|EGG53449.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
11859]
Length = 950
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP P+ + + + ++ I +++PG+EADD IG L ++V
Sbjct: 78 TFRSDIYPDYKANRPPMPEDLSVQIPLIFEGVQKEGIPFLQIPGIEADDTIGTLTKKAVA 137
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+GF + + + +KD +Q+++ ++ L+
Sbjct: 138 EGFNVVIATGDKDFAQLVNDNVLLV 162
>gi|58616765|ref|YP_195964.1| DNA polymerase I [Ehrlichia ruminantium str. Gardel]
gi|58416377|emb|CAI27490.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Gardel]
Length = 860
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVR-SV 60
NFRH +YP YK+NR P+ ++ L+ ++ A++I EV G EADDVI L+ S
Sbjct: 63 NFRHDIYPQYKSNRIKLPEDLISQFPLLREAVNALNISYEEVAGYEADDVIATLSKNYSK 122
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLL 85
D K+ VV+ +KD Q+L H++ +
Sbjct: 123 FDDIKVTVVTSDKDLLQLLEHNIHIF 148
>gi|157693309|ref|YP_001487771.1| DNA polymerase I [Bacillus pumilus SAFR-032]
gi|157682067|gb|ABV63211.1| DNA-directed DNA polymerase I [Bacillus pumilus SAFR-032]
Length = 879
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + YK R TP + + + +++ + A +K E+P EADD+IG LAV + D
Sbjct: 67 FRHETFKEYKGGRQKTPPELSEQMPFIRELLDAYQVKRYELPQYEADDIIGTLAVEAEKD 126
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF++++ S +KD LS + I +G
Sbjct: 127 GFEVKIFSGDKDLTQLSTDHTTVAITKKG 155
>gi|410027945|ref|ZP_11277781.1| DNA polymerase I [Marinilabilia sp. AK2]
Length = 937
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRHT + +YK NR P+ + G ++K ++A +I V+E+ G EADD+IG +A ++
Sbjct: 71 FRHTQFEAYKANRQEQPEDIEVGTPWVKQIVQAFNIPVLEMDGFEADDIIGTIAKKAERT 130
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
F++ +++P+KD Q++ + L + A G
Sbjct: 131 SFEVYMMTPDKDYGQLVEDHIFLYKPAFMG 160
>gi|406661734|ref|ZP_11069847.1| DNA polymerase I [Cecembia lonarensis LW9]
gi|405554372|gb|EKB49468.1| DNA polymerase I [Cecembia lonarensis LW9]
Length = 937
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRHT + +YK NR P+ + G ++K ++A +I V+E+ G EADD+IG +A ++
Sbjct: 71 FRHTQFEAYKANRQEQPEDIEVGTPWVKQIVQAFNIPVLEMDGFEADDIIGTIAKKAERT 130
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
F++ +++P+KD Q++ + L + A G
Sbjct: 131 SFEVYMMTPDKDYGQLVEDHIFLYKPAFMG 160
>gi|328950652|ref|YP_004367987.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884]
gi|328450976|gb|AEB11877.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884]
Length = 834
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH + +YK R PTP+ L+ +K + + + E+ G EADDVIG LA ++
Sbjct: 72 SFRHEQFAAYKAQRAPTPEDFKPQLEKIKQLVDLLGLARFELAGYEADDVIGSLAKKAEA 131
Query: 62 DGFKIQVVSPNKDS-QILSHSLCLLRIAPRGFEL 94
+G+++++V+ ++DS Q+LS + +L+ P G E+
Sbjct: 132 EGYEVRIVTSDRDSYQLLSDKVRVLK--PDGEEV 163
>gi|428168845|gb|EKX37785.1| hypothetical protein GUITHDRAFT_165393 [Guillardia theta CCMP2712]
Length = 1263
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FR T++PSYK NRP P + +K + + I V+EV G EADD+I LA R D
Sbjct: 97 SFRSTIWPSYKGNRPEVPQELKSQFDIVKEAAISFDIPVVEVEGFEADDIIATLAARLAD 156
Query: 62 DGFKIQVVSPNKD 74
+ VVS +KD
Sbjct: 157 LSHDVTVVSSDKD 169
>gi|399026928|ref|ZP_10728566.1| DNA polymerase I [Flavobacterium sp. CF136]
gi|398075692|gb|EJL66798.1| DNA polymerase I [Flavobacterium sp. CF136]
Length = 947
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R +Y YK NR TP+ + + Y++ + AM I +IE G EADD+IG +A ++ +
Sbjct: 70 RTEMYTEYKANRDATPEAIKIAIPYIQDLLNAMHIPIIEANGCEADDLIGTIAKQAEKEN 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+K+ +V+P+KD +Q++S ++ + + A G
Sbjct: 130 YKVYMVTPDKDFAQLVSENIFMYKPARMG 158
>gi|338211565|ref|YP_004655618.1| DNA polymerase I [Runella slithyformis DSM 19594]
gi|336305384|gb|AEI48486.1| DNA polymerase I [Runella slithyformis DSM 19594]
Length = 951
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH + +YK R P+ + + Y+K + A+ I V+EV G EADDV+G LA ++
Sbjct: 68 TFRHIQFEAYKAQRQQQPEDITIAVPYVKRLLNALCIPVLEVDGYEADDVVGTLAKKAAR 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLR--IAPRGFELV 95
GF++ +++P+KD Q++ + L + I +G E++
Sbjct: 128 SGFEVFMMTPDKDYGQLVEEHIYLYKPAIMGKGVEIM 164
>gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
Length = 927
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR TLYP YK +R P PD + ++ + ++ + V+ VPGVEADDVIG LA +
Sbjct: 71 FRDTLYPEYKAHRAPMPDDLRAQIEPIHQVVRLLGWPVVCVPGVEADDVIGTLAACAARQ 130
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G ++ V S +KD SQ++ + ++
Sbjct: 131 GIEVIVSSGDKDLSQLVDEHITII 154
>gi|315122836|ref|YP_004063325.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313496238|gb|ADR52837.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 233
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ +YP YK NRP P+ ++ L ++ + +A I IE+ G EADD+I A +
Sbjct: 72 FRNEIYPDYKANRPQIPEMLLPQLPLVRLATQAFGIPSIEIQGFEADDIIATYASIAEKR 131
Query: 63 GFKIQVVSPNKD-SQILSHSLCL 84
GF + +VS +KD Q++S + CL
Sbjct: 132 GFSVTIVSTDKDLMQLVSPTTCL 154
>gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J]
gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
gi|404396629|ref|ZP_10988423.1| DNA polymerase I [Ralstonia sp. 5_2_56FAA]
gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J]
gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
gi|348610574|gb|EGY60262.1| DNA polymerase I [Ralstonia sp. 5_2_56FAA]
Length = 937
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR LYP+YK +R P PD + ++ + +++A+ ++ V GVEADDVIG LA R+
Sbjct: 67 TFRDDLYPAYKEHRAPMPDDLRAQIEPIHEAVRALGWPILVVEGVEADDVIGTLAERAAR 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G + V + +KD +Q+++ + L+
Sbjct: 127 EGVRTIVSTGDKDLAQLVNDHVTLV 151
>gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3]
gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3]
Length = 936
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK NRP PD + ++ L A IKAM + ++ VPGVEADDVIG L+ ++
Sbjct: 68 TFRDDMYSQYKANRPSMPDDLRIQIEPLHAVIKAMGLPILIVPGVEADDVIGTLSKQASA 127
Query: 62 DGFKIQVVSPNKDSQIL--SHSLCL 84
G K + + +KD L H+L +
Sbjct: 128 KGIKTLISTGDKDMAQLVDEHTLLI 152
>gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102]
gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102]
Length = 930
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++P YK RPP PD + + L ++ M V+ +P VEADDVIG LA + +
Sbjct: 67 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAKMAGE 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + V + +KD +Q+++ + L+
Sbjct: 127 AGWNVVVSTGDKDMAQLVNERVTLV 151
>gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
Length = 944
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP+YK +R P PD + Q ++ + +++A+ ++ V GVEADDVIG L R+ +
Sbjct: 68 FRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLTERAARE 127
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 128 GIRTVVSTGDKDLAQLVNDHVTLV 151
>gi|389573843|ref|ZP_10163914.1| DNA polymerase I [Bacillus sp. M 2-6]
gi|388426413|gb|EIL84227.1| DNA polymerase I [Bacillus sp. M 2-6]
Length = 879
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + YK R TP + + + +++ + A +K E+P EADD+IG LAV + D
Sbjct: 67 FRHETFKEYKGGRQKTPPELSEQMPFIRELLDAYQVKRYELPQYEADDIIGTLAVEAEKD 126
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF++++ S +KD LS + I +G
Sbjct: 127 GFEVKIFSGDKDLTQLSTDHTTVAITKKG 155
>gi|344171961|emb|CCA84587.1| DNA polymerase I (POL I) [Ralstonia syzygii R24]
Length = 944
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP+YK +R P PD + Q ++ + +++A+ ++ V GVEADDVIG L R+ +
Sbjct: 68 FRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLTERAARE 127
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 128 GIRTVVSTGDKDLAQLVNDHVTLV 151
>gi|332291323|ref|YP_004429932.1| DNA polymerase I [Krokinobacter sp. 4H-3-7-5]
gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter sp. 4H-3-7-5]
Length = 949
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R + YK NR TP+ + + +++ ++AM I +IE GVEADD+IG L+ ++ +G
Sbjct: 75 RVEAFEDYKANRDETPEAIRIAIPHIQEILRAMHIPIIERQGVEADDLIGTLSKQAEKEG 134
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
FK+ +V+P+KD +Q++S ++ + + A G
Sbjct: 135 FKVYMVTPDKDYAQLVSENIFMYKPARMG 163
>gi|417750609|ref|ZP_12398964.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis S397]
gi|336457772|gb|EGO36766.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis S397]
Length = 913
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 89 FRSDRYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDLIATLATQAENE 148
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++DS Q++S ++ +L
Sbjct: 149 GYRVLVVTGDRDSLQLVSDNVTVL 172
>gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
Length = 920
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 60/97 (61%), Gaps = 6/97 (6%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FR+ +P YK R TP+ + + + +K +KA I +++V G EADDVIG LA ++
Sbjct: 63 LTFRNEAFPQYKAQREETPEDIRKSVPLIKDILKAYHIPILQVDGFEADDVIGTLATQAQ 122
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFE 93
D G + +++P+KD Q++S ++ + R PR G+E
Sbjct: 123 DAGVETFMLTPDKDYGQLVSDNVFIFR--PRHGGGYE 157
>gi|303257898|ref|ZP_07343907.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
gi|302859241|gb|EFL82323.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
Length = 891
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK NRPP P+ + + + ++ I +++PG+EADD IG L ++V
Sbjct: 19 TFRSDIYPDYKANRPPMPEDLSVQIPLIFEGVQKEGIPFLQIPGIEADDTIGTLTKKAVA 78
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+GF + + + +KD +Q+++ ++ L+
Sbjct: 79 EGFNVVIATGDKDFAQLVNDNVLLV 103
>gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 906
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ +
Sbjct: 82 FRSERYPEYKANRSSTPDEFHGQIDITKEVLNALGITVLAEPGFEADDLIATLATQAEHE 141
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
GF++ VV+ ++DS Q++S + +L
Sbjct: 142 GFRVLVVTGDRDSLQLVSDDVTVL 165
>gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291]
Length = 913
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 89 FRSDRYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDLIATLATQAENE 148
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++DS Q++S ++ +L
Sbjct: 149 GYRVLVVTGDRDSLQLVSDNVTVL 172
>gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104]
gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104]
Length = 913
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 89 FRSDRYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDLIATLATQAENE 148
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++DS Q++S ++ +L
Sbjct: 149 GYRVLVVTGDRDSLQLVSDNVTVL 172
>gi|344167306|emb|CCA79516.1| DNA polymerase I (POL I) [blood disease bacterium R229]
Length = 944
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP+YK +R P PD + Q ++ + +++A+ ++ V GVEADDVIG L R+ +
Sbjct: 68 FRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLTERAARE 127
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 128 GIRTVVSTGDKDLAQLVNDHVTLV 151
>gi|418464049|ref|ZP_13034991.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359757390|gb|EHK91544.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 932
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++ +
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLASQASKN 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GQKVLISTGDKDMAQLVDDNIMLI 152
>gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
Length = 948
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH L P YK +RP P + + + Y+ I+AM I ++ + GVEADD+IG LA R+ +
Sbjct: 80 FRHKLSPIYKGDRPEMPAELAEQIPYIHKMIQAMGIPLLAIEGVEADDIIGTLAHRACLE 139
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 140 GHHVIISTGDKD 151
>gi|239626380|ref|ZP_04669411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516526|gb|EEQ56392.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 920
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y +YK R P P+ + Q + +K + AM + ++ + G EADD++G +A +S
Sbjct: 63 TFRHKMYDAYKGTRKPMPEELHQQVDLMKEVLTAMGVPILTLAGYEADDILGTVARKSQS 122
Query: 62 DGFKIQVVSPNKDSQILSHSLCLLRI 87
G + VVS ++D LS +RI
Sbjct: 123 QGIDVSVVSGDRDLLQLSDEHIKIRI 148
>gi|209962628|gb|ACJ02109.1| Taq DNA polymerase [Escherichia coli]
Length = 306
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y YK R PTP+ + L +K + + + +EVPG EADDV+ LA ++
Sbjct: 70 SFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEK 129
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGF 92
+G+++++++ +KD Q+LS + +L P G+
Sbjct: 130 EGYEVRILTADKDLYQLLSDRIHVLH--PEGY 159
>gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168]
gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168]
Length = 870
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK +R P+ + L +K +K+ SI +IE+ G EADD+IG +A + ++
Sbjct: 65 FRHKEYKEYKAHRKKMPEELKPQLSLIKEVLKSFSIPIIEIEGFEADDIIGTMARKGEEE 124
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
GF++ +V+ ++D+ Q+++ + ++
Sbjct: 125 GFEVVIVTGDRDALQLVTEDVSVM 148
>gi|386824733|ref|ZP_10111863.1| DNA polymerase I [Serratia plymuthica PRI-2C]
gi|386378410|gb|EIJ19217.1| DNA polymerase I [Serratia plymuthica PRI-2C]
Length = 933
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L +KAM + ++ PGVEADDVIG LA+ +
Sbjct: 69 FRDELFAEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLVTPGVEADDVIGTLALEAEKA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 129 GHAVLISTGDKDMAQLVTPNVTLI 152
>gi|416052203|ref|ZP_11578105.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
gi|347992293|gb|EGY33702.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
Length = 933
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++ +
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLASQASKN 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GQKVLISTGDKDMAQLVDDNIMLI 152
>gi|456064031|ref|YP_007503001.1| DNA polymerase I [beta proteobacterium CB]
gi|455441328|gb|AGG34266.1| DNA polymerase I [beta proteobacterium CB]
Length = 947
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK +R P P+ +V+ ++ + A +KA+ V+ V GVEADDVIG LA ++
Sbjct: 70 TFRDEMYSEYKAHRSPMPEDLVKQIEPIHAMVKALGWPVLMVSGVEADDVIGTLACQATQ 129
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G++ + + +KD +Q+++ S+ L+
Sbjct: 130 AGWETIISTGDKDLAQLVNSSVTLI 154
>gi|404215365|ref|YP_006669560.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
[Gordonia sp. KTR9]
gi|403646164|gb|AFR49404.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
[Gordonia sp. KTR9]
Length = 926
Score = 64.7 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK R +PD + K + A+ + V+ + G EADD+I LA R+ +D
Sbjct: 97 FRSEMYPEYKAQRSKSPDEFNGQVDLTKEVLDALGVSVLAIEGYEADDIIATLATRARED 156
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+K+ +V+ ++DS Q++ S +L
Sbjct: 157 GYKVLIVTGDRDSLQLVDSSTTVL 180
>gi|428223606|ref|YP_007107703.1| DNA polymerase I [Geitlerinema sp. PCC 7407]
gi|427983507|gb|AFY64651.1| DNA polymerase I [Geitlerinema sp. PCC 7407]
Length = 961
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +YK+ RP TP+ + +Q L+ + A ++ V+ PG EADDVIG LA R+
Sbjct: 66 TFRHEADETYKDGRPDTPEDFIPDIQNLQKLLAACNLPVLTAPGYEADDVIGTLARRAST 125
Query: 62 DGFKIQVVSPNKD 74
G++++++S ++D
Sbjct: 126 AGYRVKILSGDQD 138
>gi|375254748|ref|YP_005013915.1| DNA-directed DNA polymerase [Tannerella forsythia ATCC 43037]
gi|363406951|gb|AEW20637.1| DNA-directed DNA polymerase [Tannerella forsythia ATCC 43037]
Length = 934
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH Y +YK R TP+ + + Y++ I A I V+E+P EADDVIG +A ++
Sbjct: 64 TFRHEAYEAYKAQREETPEDIRIAIPYIRKIIAAYRIPVLEMPHYEADDVIGTIAKQAEQ 123
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLR 86
+GFK+ +++ +KD Q++S + R
Sbjct: 124 EGFKVLMMTSDKDYGQLVSEHIFQYR 149
>gi|421786277|ref|ZP_16222686.1| DNA-directed DNA polymerase I [Serratia plymuthica A30]
gi|407751623|gb|EKF61797.1| DNA-directed DNA polymerase I [Serratia plymuthica A30]
Length = 933
Score = 64.7 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L +KAM + ++ PGVEADDVIG LA+ +
Sbjct: 69 FRDELFAEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLVTPGVEADDVIGTLALEAEKA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 129 GHAVLISTGDKDMAQLVTPNVTLI 152
>gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735]
gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735]
Length = 920
Score = 64.7 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 59/97 (60%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +P YK R TP+ + + ++K ++A I +++V G EADDVIG LA ++ +
Sbjct: 65 FRHEAFPPYKAQRQETPEDITFSVPFIKDILRAFHIPILQVEGFEADDVIGTLATKAGKE 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ ++ + R PR G++++
Sbjct: 125 GIATYMLTPDKDYGQLIRENVFMYR--PRHGGGYDII 159
>gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13]
gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13]
Length = 933
Score = 64.7 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L +KAM + ++ PGVEADDVIG LA+ +
Sbjct: 69 FRDELFAEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLVTPGVEADDVIGTLALEAEKA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 129 GHAVLISTGDKDMAQLVTPNVTLI 152
>gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700]
gi|422337267|ref|ZP_16418238.1| DNA polymerase I [Aggregatibacter aphrophilus F0387]
gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700]
gi|353345481|gb|EHB89773.1| DNA polymerase I [Aggregatibacter aphrophilus F0387]
Length = 985
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++
Sbjct: 122 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLACQASQS 181
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 182 GQKVLISTGDKDMTQLVDDNIMLI 205
>gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
Length = 911
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +Y YK NRPP P+ + ++ L ++AM + ++ + GVEADDVIG LA +
Sbjct: 71 NFRHEMYSDYKANRPPMPEDLACQIEPLYDIVRAMGLPLLIIEGVEADDVIGTLAHEATT 130
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + +KD +Q++S + L+
Sbjct: 131 KGLDAVISTGDKDMAQLVSPHVTLV 155
>gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421]
gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421]
Length = 938
Score = 64.7 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + +YK+ R TPD + LQ L+ + A+ + E+PG EADD+IG LAV
Sbjct: 74 FRHEVDATYKSGRAETPDEFIDDLQNLREILTALDLPQFELPGYEADDLIGTLAVHGAGQ 133
Query: 63 GFKIQVVSPNKD 74
G+ ++++S ++D
Sbjct: 134 GYDVKILSGDQD 145
>gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198]
gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198]
Length = 904
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFR TLYP YK+ R P + L + IK M + + + G EADDVI L+ +V
Sbjct: 63 NFRKTLYPKYKSTRQEIPQDLALQLPIVMEWIKRMKLTSVSIEGYEADDVIATLSNLAVK 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+++++ S +KD Q+++ +CL
Sbjct: 123 KGYEVEIYSHDKDLYQLINEGICLF 147
>gi|440233105|ref|YP_007346898.1| DNA polymerase I family protein with 3'-5'-exonuclease and
polymerase domains [Serratia marcescens FGI94]
gi|440054810|gb|AGB84713.1| DNA polymerase I family protein with 3'-5'-exonuclease and
polymerase domains [Serratia marcescens FGI94]
Length = 932
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ PGVEADDVIG LA+++
Sbjct: 68 TFRDELFAEYKSHRPPMPDDLRAQIEPLHRMVKAMGLPLLVTPGVEADDVIGTLALQAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGHAVLISTGDKDMAQLVTPNVTLI 152
>gi|407643687|ref|YP_006807446.1| DNA polymerase I [Nocardia brasiliensis ATCC 700358]
gi|407306571|gb|AFU00472.1| DNA polymerase I [Nocardia brasiliensis ATCC 700358]
Length = 887
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD ++ K + AM I V+ + G EADD+I L ++V +
Sbjct: 62 FRTEAYPEYKANRSQTPDEFRGQVELTKDVLGAMGIPVMAIEGFEADDIIATLTTQAVSE 121
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
GF++ +VS ++D+ Q+++ ++ +L
Sbjct: 122 GFRVLIVSGDRDAIQLVNDNVTVL 145
>gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737]
Length = 830
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y +YK R PTP+ + L +K + + + +EVPG EADDV+ LA ++
Sbjct: 69 SFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGLVRLEVPGFEADDVLATLAKKAER 128
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+G++++++S ++D Q+LS + LL P G
Sbjct: 129 EGYEVRILSADRDLYQLLSDRIHLLH--PEG 157
>gi|119946792|ref|YP_944472.1| multifunctional 5'-3' exonuclease/3'-5' polymerase/3'-5'
exonuclease [Psychromonas ingrahamii 37]
gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
3'->5' exonuclease [Psychromonas ingrahamii 37]
Length = 938
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK+NRP PD + ++ L A IKAM + ++ +PGVEADDVIG L+ ++
Sbjct: 68 TFRDDMYTEYKSNRPSMPDDLRIQIEPLHAVIKAMGLPILTIPGVEADDVIGTLSRQASA 127
Query: 62 DGFKIQVVSPNKDSQILSHSLCLL 85
G + + +KD L + LL
Sbjct: 128 QGITTLISTGDKDMAQLVDTNTLL 151
>gi|449134849|ref|ZP_21770315.1| DNA polymerase I [Rhodopirellula europaea 6C]
gi|448886476|gb|EMB16881.1| DNA polymerase I [Rhodopirellula europaea 6C]
Length = 1071
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FR+ LYP YK NR PD + Q + ++ +I AM I +IE G EADD++ +A +
Sbjct: 232 VTFRNELYPEYKANRDSMPDELRQQIPLIRQAIDAMGIGIIEQSGFEADDLLATVAAKVE 291
Query: 61 DDGFKIQVVSPNKDSQIL 78
D G + VV+ +KD + L
Sbjct: 292 DAGGRCLVVTSDKDCRQL 309
>gi|225630667|ref|YP_002727458.1| DNA polymerase I [Wolbachia sp. wRi]
gi|225592648|gb|ACN95667.1| DNA polymerase I [Wolbachia sp. wRi]
Length = 858
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH LYP YK NR P+ + L+ +++A ++ E+ G EADD+I LA + +
Sbjct: 63 NFRHDLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIATLAAKYAN 122
Query: 62 -DGFKIQVVSPNKD-SQILSHSLCLL 85
FK+ VVS +KD Q+L++++ +
Sbjct: 123 HQDFKVVVVSSDKDLFQLLNYNILIF 148
>gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 919
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 95 FRSDRYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDLIATLATQAENE 154
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++DS Q++S ++ +L
Sbjct: 155 GYRVLVVTGDRDSLQLVSDNVTVL 178
>gi|410696876|gb|AFV75944.1| DNA polymerase I [Thermus oshimai JL-2]
Length = 830
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y +YK R PTP+ + L +K + + + +EVPG EADDV+ LA ++
Sbjct: 69 SFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGLVRLEVPGFEADDVLATLAKKAER 128
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+G++++++S ++D Q+LS + LL P G
Sbjct: 129 EGYEVRILSADRDLYQLLSDRIHLLH--PEG 157
>gi|333929795|ref|YP_004503374.1| DNA polymerase I [Serratia sp. AS12]
gi|333934748|ref|YP_004508326.1| DNA polymerase I [Serratia plymuthica AS9]
gi|386331618|ref|YP_006027788.1| DNA polymerase I [Serratia sp. AS13]
gi|333476355|gb|AEF48065.1| DNA polymerase I [Serratia plymuthica AS9]
gi|333493855|gb|AEF53017.1| DNA polymerase I [Serratia sp. AS12]
gi|333963951|gb|AEG30724.1| DNA polymerase I [Serratia sp. AS13]
Length = 933
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L +KAM + ++ PGVEADDVIG LA+ +
Sbjct: 69 FRDDLFAEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLVTPGVEADDVIGTLALEAEKA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 129 GHAVLISTGDKDMAQLVTPNVTLI 152
>gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901]
gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901]
Length = 908
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK NRPP PD + ++ L I+AM + ++ V GVEADDVIG LA +
Sbjct: 65 TFRDDMYKDYKANRPPMPDDLRSQVEPLHELIRAMGLPLLIVEGVEADDVIGTLAREGTE 124
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 125 KGLPVVVSTGDKDMAQLVNEHITLV 149
>gi|433647755|ref|YP_007292757.1| DNA polymerase I [Mycobacterium smegmatis JS623]
gi|433297532|gb|AGB23352.1| DNA polymerase I [Mycobacterium smegmatis JS623]
Length = 897
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK R TPD + K + A+ I V+ PG EADD+I LA ++ DD
Sbjct: 74 FRVDKYPEYKAGRSATPDEFRGQIDITKEVLVALGITVLAEPGFEADDIIATLATQAEDD 133
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++DS Q++S + +L
Sbjct: 134 GYRVLVVTGDRDSLQLVSDDVTVL 157
>gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
Length = 934
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L +KAM + ++ V GVEADDVIG LA +
Sbjct: 69 FRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLAVSGVEADDVIGTLAQEAEKA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G+ + + + +KD +Q+++ ++ L+
Sbjct: 129 GYSVLISTGDKDMAQLVTPNITLI 152
>gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017]
gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017]
Length = 957
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +YK NR TP+ + L+ L+ + AM + ++ PG EADDV+G LA ++
Sbjct: 63 TFRHKADETYKANRAETPEDFIPDLENLQELLTAMDLPIVVEPGYEADDVLGTLAYQASQ 122
Query: 62 DGFKIQVVSPNKD 74
GFK++++S ++D
Sbjct: 123 QGFKVKILSGDRD 135
>gi|375012630|ref|YP_004989618.1| DNA polymerase I [Owenweeksia hongkongensis DSM 17368]
gi|359348554|gb|AEV32973.1| DNA polymerase I [Owenweeksia hongkongensis DSM 17368]
Length = 927
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH + +YK R TP+ + + Y++ ++A I + V G EADDVIG LA ++
Sbjct: 69 TFRHEKFEAYKAQRDETPEGIKLAVPYIQKLMEAFRIPFLGVEGFEADDVIGTLAKQAEK 128
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+GF++ +++P+KD Q++S ++ + R A G
Sbjct: 129 EGFEVFMMTPDKDFGQLVSENIKMYRPARAG 159
>gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
Length = 950
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++ +
Sbjct: 87 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLARQASQN 146
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 147 GQKVLISTGDKDMAQLVDDNIMLI 170
>gi|320334043|ref|YP_004170754.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
gi|319755332|gb|ADV67089.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
Length = 857
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + YK R TP+ + + + +++ + AM + +EVPG EADDVIG LA R+
Sbjct: 69 FRHEQFEGYKAGRAQTPEDLPKQINRIRSLVDAMGLPRLEVPGYEADDVIGTLAKRAEAQ 128
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G +++V+ ++D+ Q+LS + +L
Sbjct: 129 GLNVRIVTSDRDAYQLLSERVKVL 152
>gi|319900544|ref|YP_004160272.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
gi|319415575|gb|ADV42686.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
Length = 952
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A I ++EVPG EADDVIG LA +
Sbjct: 69 FRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGTLATEAGKR 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q+++ ++ + R P+ GFE++
Sbjct: 129 GITTYMMTPDKDYGQLVADNVFMYR--PKHTGGFEVM 163
>gi|387121098|ref|YP_006286981.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
gi|385875590|gb|AFI87149.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 933
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++ +
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQASKN 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GQKVLISTGDKDMAQLVDDNIMLI 152
>gi|359457186|ref|ZP_09245749.1| DNA polymerase I [Acaryochloris sp. CCMEE 5410]
Length = 983
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +YK NR TP+ + L+ L+ + AM + ++ PG EADDV+G LA ++
Sbjct: 89 TFRHKADETYKANRAETPEDFIPDLENLQELLTAMDLPIVVEPGYEADDVLGTLAYQASQ 148
Query: 62 DGFKIQVVSPNKD 74
GFK++++S ++D
Sbjct: 149 QGFKVKILSGDRD 161
>gi|415756317|ref|ZP_11481025.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D17P-3]
gi|348655828|gb|EGY71260.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D17P-3]
Length = 895
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++ +
Sbjct: 31 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQASKN 90
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 91 GQKVLISTGDKDMAQLVDDNIMLI 114
>gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium]
Length = 944
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y +YK NRP P+ + G+ Y+K +KAM+I ++++ G EADDVIG +A +
Sbjct: 66 FRHIEYTAYKANRPTQPEGITAGIPYIKMLLKAMNIPILQLEGYEADDVIGTIAKKLSAP 125
Query: 63 GFKIQVVSPNKD 74
+I +++ +KD
Sbjct: 126 DLEIYMMTSDKD 137
>gi|58696948|ref|ZP_00372442.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans]
gi|58536818|gb|EAL60040.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans]
Length = 817
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH LYP YK NR P+ + L+ +++A ++ E+ G EADD+I LA + +
Sbjct: 22 NFRHDLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIATLAAKYAN 81
Query: 62 -DGFKIQVVSPNKD-SQILSHSLCLL 85
FK+ VVS +KD Q+L++++ +
Sbjct: 82 HQDFKVVVVSSDKDLFQLLNYNILIF 107
>gi|354599764|ref|ZP_09017781.1| DNA polymerase I [Brenneria sp. EniD312]
gi|353677699|gb|EHD23732.1| DNA polymerase I [Brenneria sp. EniD312]
Length = 930
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ +YK++RPP PD + + ++ L +KAM + ++ V GVEADDVIG LA+++
Sbjct: 68 TFRDELFENYKSHRPPMPDDLREQIEPLHRMVKAMGLPLLAVSGVEADDVIGTLALQAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGIPVLISTGDKDMAQLVTPNVTLI 152
>gi|428205552|ref|YP_007089905.1| DNA polymerase I [Chroococcidiopsis thermalis PCC 7203]
gi|428007473|gb|AFY86036.1| DNA polymerase I [Chroococcidiopsis thermalis PCC 7203]
Length = 999
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 49/73 (67%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +YK +RP TP+ V L+ L + ++++V+ PG EADD++G LA+R+ +
Sbjct: 85 TFRHEADDTYKADRPGTPEDFVPDLKNLHELLAGLAVEVLTAPGFEADDILGTLALRASE 144
Query: 62 DGFKIQVVSPNKD 74
G+++++++ ++D
Sbjct: 145 AGYQVKILTGDRD 157
>gi|415770541|ref|ZP_11484884.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D17P-2]
gi|348656714|gb|EGY74321.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D17P-2]
Length = 933
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++ +
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQASKN 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GQKVLISTGDKDMAQLVDDNIMLI 152
>gi|416031112|ref|ZP_11572398.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
gi|348002278|gb|EGY42982.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
Length = 962
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++ +
Sbjct: 98 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQASKN 157
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 158 GQKVLISTGDKDMAQLVDDNIMLI 181
>gi|416068114|ref|ZP_11582638.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|348001358|gb|EGY42106.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
Length = 933
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++ +
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQASKN 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GQKVLISTGDKDMAQLVDDNIMLI 152
>gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1]
gi|444345405|ref|ZP_21153423.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|443542932|gb|ELT53212.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
Length = 933
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++ +
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQASKN 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GQKVLISTGDKDMAQLVDDNIMLI 152
>gi|381402205|ref|ZP_09927081.1| DNA polymerase I [Kingella kingae PYKK081]
gi|380832813|gb|EIC12705.1| DNA polymerase I [Kingella kingae PYKK081]
Length = 925
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH LY YK RPP PD + L + M KV+++ GVEADDVIG LA+ +
Sbjct: 65 NFRHALYEDYKATRPPMPDELRLQADMLPDLVDLMGWKVLKISGVEADDVIGTLAIAAAA 124
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+ + + +KD +Q++S + L+
Sbjct: 125 QDMNVIISTGDKDMAQLVSPRITLV 149
>gi|365966721|ref|YP_004948283.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans ANH9381]
gi|365745634|gb|AEW76539.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans ANH9381]
Length = 933
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++ +
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQASKN 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GQKVLISTGDKDMAQLVDDNIMLI 152
>gi|444334877|ref|ZP_21150292.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
gi|443549787|gb|ELT58415.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
Length = 933
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++ +
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQASKN 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GQKVLISTGDKDMAQLVDDNIMLI 152
>gi|416074754|ref|ZP_11584683.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|444337963|ref|ZP_21151873.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
gi|348006757|gb|EGY47152.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|443545907|gb|ELT55637.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
Length = 933
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++ +
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQASKN 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GQKVLISTGDKDMAQLVDDNIMLI 152
>gi|429732469|ref|ZP_19267079.1| DNA-directed DNA polymerase [Aggregatibacter actinomycetemcomitans
Y4]
gi|429155977|gb|EKX98619.1| DNA-directed DNA polymerase [Aggregatibacter actinomycetemcomitans
Y4]
Length = 933
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++ +
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQASKN 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GQKVLISTGDKDMAQLVDDNIMLI 152
>gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42]
gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42]
Length = 922
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP YK +R P PD + ++ + ++ + V+ +PGVEADDVIG LA +
Sbjct: 71 FRDALYPEYKQHRAPMPDDLRAQIEPIHEVVRLLGWPVLCIPGVEADDVIGTLAATAAGQ 130
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G ++ + S +KD SQ+++ ++ ++
Sbjct: 131 GMQVVISSGDKDLSQLVNENITII 154
>gi|389775724|ref|ZP_10193589.1| DNA polymerase I [Rhodanobacter spathiphylli B39]
gi|388436965|gb|EIL93791.1| DNA polymerase I [Rhodanobacter spathiphylli B39]
Length = 920
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 47/72 (65%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRPP PD + ++ + A + A+ ++ V GVEADDVIG LA+++ +
Sbjct: 63 FRDALYDQYKANRPPMPDDLRAQVEPMLAIVGALGFPILRVGGVEADDVIGTLAMQAHEL 122
Query: 63 GFKIQVVSPNKD 74
G +++V + +KD
Sbjct: 123 GIEVEVSTGDKD 134
>gi|333376435|ref|ZP_08468214.1| DNA-directed DNA polymerase I [Kingella kingae ATCC 23330]
gi|332967940|gb|EGK07028.1| DNA-directed DNA polymerase I [Kingella kingae ATCC 23330]
Length = 925
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH LY YK RPP PD + L + M KV+++ GVEADDVIG LA+ +
Sbjct: 65 NFRHALYEDYKATRPPMPDELRPQADMLPDLVDLMGWKVLKISGVEADDVIGTLAIAAAA 124
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+ + + +KD +Q++S + L+
Sbjct: 125 QDMNVIISTGDKDMAQLVSPRITLV 149
>gi|416054127|ref|ZP_11579105.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
gi|348003777|gb|EGY44333.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
Length = 977
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++ +
Sbjct: 113 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQASKN 172
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 173 GQKVLISTGDKDMAQLVDDNIMLI 196
>gi|416045430|ref|ZP_11575392.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
gi|347995330|gb|EGY36518.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
Length = 962
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++ +
Sbjct: 98 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQASKN 157
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 158 GQKVLISTGDKDMAQLVDDNIMLI 181
>gi|427714528|ref|YP_007063152.1| DNA polymerase I family protein [Synechococcus sp. PCC 6312]
gi|427378657|gb|AFY62609.1| DNA polymerase I family protein with 3'-5'-exonuclease and
polymerase domains [Synechococcus sp. PCC 6312]
Length = 953
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +YK RP TPD L+ L+ ++A+S+ ++ PG EADDVIG +A ++
Sbjct: 72 TFRHEADSTYKEGRPETPDDFAPDLENLQLLLQALSVPILISPGYEADDVIGTIAQQASQ 131
Query: 62 DGFKIQVVSPNKD 74
G K+++VS ++D
Sbjct: 132 AGLKVKIVSGDQD 144
>gi|408491392|ref|YP_006867761.1| DNA polymerase I PolA [Psychroflexus torquis ATCC 700755]
gi|408468667|gb|AFU69011.1| DNA polymerase I PolA [Psychroflexus torquis ATCC 700755]
Length = 942
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R +Y YK NR TP + + ++ + AM I V+E+ G+EADD+IG LA+++
Sbjct: 70 RKEMYVEYKANRDATPTVIKDSIPIIQDILHAMEIPVVEISGMEADDIIGTLAIQAEKQN 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+++ +V+P+KD +Q+++ ++ + R A G
Sbjct: 130 YEVHMVTPDKDFAQLVTENIFMQRPARMG 158
>gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
BAA-1200]
Length = 932
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++ YK RPP PD + + L ++ M V+ VP VEADDVIG LAV+ +
Sbjct: 68 NFRHEMFADYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVVPQVEADDVIGTLAVQGGE 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + + + +KD +Q+++ + L+
Sbjct: 128 AGWDVVISTGDKDMAQLVNERVTLV 152
>gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
Length = 926
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRP PD + +Q + + A+ I ++ + GVEADDVIG LA+++ D
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQAASD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLSVTISTGDKD 134
>gi|227327116|ref|ZP_03831140.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 929
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ +YK +RPP P+ + + ++ L +KAM + ++ V GVEADDVIG LAV++
Sbjct: 68 TFRDELFENYKAHRPPMPEDLREQIEPLHKMVKAMGLPLLAVSGVEADDVIGTLAVQAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ S+ L+
Sbjct: 128 AGKSVLISTGDKDMAQLVTPSVTLI 152
>gi|429749608|ref|ZP_19282711.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 332 str.
F0381]
gi|429167545|gb|EKY09450.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 332 str.
F0381]
Length = 926
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R L+ YK NR TP+ + + Y+ + A+ I +IE G EADD+IG LA ++
Sbjct: 68 RTELFTDYKANREETPEAIRIAIPYIHQILNALHIPIIEKEGYEADDIIGTLAKQAEKQD 127
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRGFEL 94
F++ +V+P+KD +Q++S ++ + R A G E+
Sbjct: 128 FEVYMVTPDKDYAQLVSDNIFMYRPARNGNEV 159
>gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
STIR1]
gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
STIR1]
Length = 942
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK +R P P+ +V+ ++ + A +KA+ V+ V GVEADDVIG LA ++
Sbjct: 65 TFRDEMYSEYKAHRSPMPEDLVKQIEPIHAMVKALGWPVLMVGGVEADDVIGTLACQATQ 124
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G++ + + +KD +Q+++ S+ L+
Sbjct: 125 AGWETIISTDDKDLAQLVNSSVTLI 149
>gi|389772408|ref|ZP_10192124.1| DNA polymerase I [Rhodanobacter sp. 115]
gi|388429614|gb|EIL86918.1| DNA polymerase I [Rhodanobacter sp. 115]
Length = 761
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ +Y YK NRPP PD + ++ + A + A+ ++ V GVEADDVIG LAV++
Sbjct: 63 FRNDMYDQYKANRPPMPDDLRAQVEPMLAIVGALGFPILRVSGVEADDVIGTLAVQAHAQ 122
Query: 63 GFKIQVVSPNKD 74
G ++++ + +KD
Sbjct: 123 GIEVEISTGDKD 134
>gi|383816825|ref|ZP_09972215.1| DNA polymerase I [Serratia sp. M24T3]
gi|383294354|gb|EIC82698.1| DNA polymerase I [Serratia sp. M24T3]
Length = 932
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +K+M + ++ VPGVEADDVIG LA+ +
Sbjct: 68 TFRDELFTEYKSHRPPMPDDLRAQIEPLHQMVKSMGLPLLVVPGVEADDVIGTLALEAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGHSVLISTGDKDMAQLVTPGVTLI 152
>gi|444347338|ref|ZP_21155248.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|443548872|gb|ELT58000.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 966
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++ +
Sbjct: 103 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQASKN 162
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 163 GQKVLISTGDKDMAQLVDDNIMLI 186
>gi|357415770|ref|YP_004928790.1| DNA polymerase I [Pseudoxanthomonas spadix BD-a59]
gi|355333348|gb|AER54749.1| DNA polymerase I [Pseudoxanthomonas spadix BD-a59]
Length = 921
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP+YK NR PD + ++ + A + A+ I ++ V GVEADDVIG LA++ +
Sbjct: 63 FRDALYPAYKANRAAMPDQLRAQVEPMCAIVHALGIDILRVEGVEADDVIGTLALQGHAE 122
Query: 63 GFKIQVVSPNKD 74
G ++ + + +KD
Sbjct: 123 GLQVTISTSDKD 134
>gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
Length = 920
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +P YK R TP+ + Q + +K ++AM I +++ G EADDVIG +A R D
Sbjct: 65 FRHEAFPDYKAQREETPEDIRQSVPIIKQILEAMHIPILQADGFEADDVIGTVATRFGAD 124
Query: 63 GFKIQVVSPNKD 74
G +++P+KD
Sbjct: 125 GIDTFMLTPDKD 136
>gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 903
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK NRPP PD + ++ L ++AM + ++ VPGVEADDVI LA +
Sbjct: 67 FRDEMYAEYKANRPPMPDELAAQVEPLHQVVQAMGLPMLVVPGVEADDVIATLAREGREH 126
Query: 63 GFKIQVVSPNKD 74
G ++ + + +KD
Sbjct: 127 GLEVVISTGDKD 138
>gi|394990045|ref|ZP_10382877.1| DNA polymerase I [Sulfuricella denitrificans skB26]
gi|393790310|dbj|GAB72516.1| DNA polymerase I [Sulfuricella denitrificans skB26]
Length = 906
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR LYP YK +RPP PD + + ++ L +I+AM ++ V GVEADDVIG L+ +
Sbjct: 65 TFRDDLYPEYKAHRPPMPDDLARQIEPLHEAIRAMGWPLLMVDGVEADDVIGTLSELAWR 124
Query: 62 DGFKIQVVSPNKD 74
G + + + +KD
Sbjct: 125 QGIRTVISTGDKD 137
>gi|377567701|ref|ZP_09796908.1| DNA polymerase I [Gordonia terrae NBRC 100016]
gi|377535099|dbj|GAB42073.1| DNA polymerase I [Gordonia terrae NBRC 100016]
Length = 926
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK R +PD + K + A+ + V+ + G EADD+I LA R+ +D
Sbjct: 97 FRSEMYPEYKAQRSKSPDEFNGQVDLTKEVLDALGVSVLAIEGYEADDIIATLATRARED 156
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+K+ +V+ ++DS Q++ S +L
Sbjct: 157 GYKVLIVTGDRDSLQLVDASTTVL 180
>gi|375141661|ref|YP_005002310.1| DNA polymerase I [Mycobacterium rhodesiae NBB3]
gi|359822282|gb|AEV75095.1| DNA polymerase I [Mycobacterium rhodesiae NBB3]
Length = 902
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK R TPD + K + A+ I V+ PG EADD+I LA ++ D+
Sbjct: 78 FRKEKYPEYKEGRSATPDEFRGQIDITKEVLGALGITVLAEPGFEADDIIATLATQAEDE 137
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++DS Q++S + +L
Sbjct: 138 GYRVLVVTGDRDSLQLVSPDVTVL 161
>gi|310658711|ref|YP_003936432.1| DNA polymerase I [[Clostridium] sticklandii]
gi|308825489|emb|CBH21527.1| DNA polymerase I [[Clostridium] sticklandii]
Length = 888
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y +YK NR PD + + ++ LK I A I IE+ G EADD+IG +A D
Sbjct: 76 FRHKQYDAYKGNRKKMPDELREQVEPLKKMIDAFGINRIELEGYEADDLIGTVAKNFEQD 135
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
GF++ +++ +KD+ Q++S + +L
Sbjct: 136 GFEVYIITGDKDALQLVSDKIKVL 159
>gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1]
gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1]
Length = 928
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L ++AM + ++ V GVEADDVIG LA+ +
Sbjct: 68 TFRDELFEHYKSHRPPMPDELRAQIEPLHEMVRAMGLPLLAVSGVEADDVIGTLALEAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 KGLSVLISTGDKDMAQLVTPAITLI 152
>gi|416108059|ref|ZP_11590897.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348004683|gb|EGY45181.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
Length = 431
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++ +
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQASKN 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GQKVLISTGDKDMAQLVDDNIMLI 152
>gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus]
Length = 832
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y YK R PTP+ + L +K + + + +EVPG EADDV+ LA ++
Sbjct: 72 SFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEK 131
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGF 92
+G+++++++ +KD Q+LS + L P G+
Sbjct: 132 EGYEVRILTADKDLYQLLSDRIHALH--PEGY 161
>gi|372277221|ref|ZP_09513257.1| DNA polymerase I [Pantoea sp. SL1_M5]
Length = 928
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L ++AM + ++ V GVEADDVIG LA+ +
Sbjct: 68 TFRDELFEHYKSHRPPMPDELRAQIEPLHEMVRAMGLPLLAVSGVEADDVIGTLALEAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 KGLSVLISTGDKDMAQLVTPAITLI 152
>gi|219110613|ref|XP_002177058.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411593|gb|EEC51521.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 389
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH+LYP YK NRP P +V ++ + KA I IE EADDVI LA +++
Sbjct: 124 TFRHSLYPEYKGNRPDAPVDLVPQFALVREAAKAYGIPQIEAATFEADDVIATLATMAIE 183
Query: 62 DGFKIQVVSPNKD 74
+G ++S +KD
Sbjct: 184 EGIDTNILSGDKD 196
>gi|403056445|ref|YP_006644662.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
PCC21]
gi|402803771|gb|AFR01409.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
PCC21]
Length = 891
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ +YK +RPP P+ + + ++ L +KAM + ++ V GVEADDVIG LAV++
Sbjct: 30 TFRDELFENYKAHRPPMPEDLREQIEPLHKMVKAMGLPLLAVSGVEADDVIGTLAVQAEK 89
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ S+ L+
Sbjct: 90 AGKSVLISTGDKDMAQLVTPSVTLI 114
>gi|390437335|ref|ZP_10225873.1| DNA polymerase I [Pantoea agglomerans IG1]
Length = 928
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L ++AM + ++ V GVEADDVIG LA+ +
Sbjct: 68 TFRDELFEHYKSHRPPMPDELRAQIEPLHEMVRAMGLPLLAVSGVEADDVIGTLALEAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 KGLSVLISTGDKDMAQLVTPAITLI 152
>gi|407715462|ref|YP_006836742.1| DNA polymerase I [Cycloclasticus sp. P1]
gi|407255798|gb|AFT66239.1| DNA polymerase I [Cycloclasticus sp. P1]
Length = 905
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR+ +YP YK NR PD + + ++ L IKAM + ++ PGVEADDVIG LA ++ +
Sbjct: 65 TFRNDMYPEYKANRASMPDELREQIKPLHQLIKAMGLPLVMEPGVEADDVIGTLAKQAEE 124
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+ + + + +KD +Q++++ L+
Sbjct: 125 EDLNVVISTGDKDIAQLVTNKTSLI 149
>gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
Length = 930
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ ++ YK++RPP PD + + +Q L I+A+ I ++ V G+EADDVIG LA+++
Sbjct: 69 FRNEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQASSL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDDNIMLI 152
>gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972]
gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972]
Length = 932
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR LYP YK RPP PD + ++ L I+AM + ++ + GVEADDVIG LA ++
Sbjct: 68 TFRDELYPEYKAQRPPMPDDLRCQIEPLHNVIRAMGLPLLSIEGVEADDVIGTLAHQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 AGIPVLISTGDKDMAQLVDDNVTLI 152
>gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
Length = 984
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 3 FRHTLYPSYKNNRPPTPDTMV----QGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVR 58
FR LYP YK R D + QGLQ + + A I V+ PG EADDVIG +A R
Sbjct: 73 FRDELYPDYKATREKLTDDLQADFDQGLQRVLQLLAAYDIPVLSAPGFEADDVIGTMAAR 132
Query: 59 SVDDGFKIQVVSPNKDSQIL 78
V+ G+ + VVS +KD Q L
Sbjct: 133 GVEAGYNVVVVSGDKDFQQL 152
>gi|416174680|ref|ZP_11609272.1| DNA polymerase I [Neisseria meningitidis OX99.30304]
gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304]
Length = 937
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++P YK RPP PD + + L ++ + V+ +P VEADDVIG LA + +
Sbjct: 66 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLIGWPVLVIPQVEADDVIGTLAAMAGE 125
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + V + +KD +Q+++ + L+
Sbjct: 126 AGWNVVVSTGDKDMAQLVNERVTLV 150
>gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
Length = 945
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ +P YK R TP+ + + Y++ +KAM I +++ G EADDVIG LA R D
Sbjct: 90 FRNEAFPQYKAQREATPEDIKLSVPYIQDILKAMHIPILQADGFEADDVIGTLATRFSAD 149
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ + + R PR G+E++
Sbjct: 150 GIDTFMLTPDKDYGQLIGSHVYMYR--PRHGGGYEIL 184
>gi|440751177|ref|ZP_20930412.1| DNA polymerase I [Mariniradius saccharolyticus AK6]
gi|436480216|gb|ELP36468.1| DNA polymerase I [Mariniradius saccharolyticus AK6]
Length = 938
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + +YK NR P+ + G ++K ++A +I V+E+ G EADD+IG LA ++
Sbjct: 71 FRHKQFEAYKANRQEQPEDIEVGTPWVKRIVQAFNIPVLEMDGYEADDIIGTLAKKAERT 130
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
F++ +++P+KD QI+ + L + A G
Sbjct: 131 SFEVYMMTPDKDYGQIVEDHIFLYKPAFMG 160
>gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804]
gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii]
Length = 948
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP YK++RPP P+ + ++ + +++A+ +V+ + GVEADD+IG LA ++
Sbjct: 108 FRDDLYPDYKSHRPPMPEDLAAQIEPIHQAVRALGWQVLAIEGVEADDIIGTLACQASGM 167
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q++ ++ L+
Sbjct: 168 GIRTIVSTGDKDLAQLVDANVTLV 191
>gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
Length = 889
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y YK NRPP + + + Y+K +A ++ ++E+ G EADD+IG LA ++
Sbjct: 63 TFRHEMYKDYKANRPPMDEALAVQIPYIKNVTEAFNMPMLEMQGYEADDLIGTLAKKAEK 122
Query: 62 DGFKIQVVSPNKD 74
GF + +V+ +KD
Sbjct: 123 QGFMVVMVTGDKD 135
>gi|426402006|ref|YP_007020978.1| DNA polymerase I family protein [Candidatus Endolissoclinum patella
L2]
gi|425858674|gb|AFX99710.1| DNA polymerase I family protein [Candidatus Endolissoclinum patella
L2]
Length = 955
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+FRH +Y YK NRP P+ +++ ++ +I A ++ IE+ G EADDVI +V
Sbjct: 91 FSFRHRIYHHYKANRPELPEDLIKQFPLIREAIMAFNVPCIEMEGFEADDVIATYTREAV 150
Query: 61 DDGFKIQVVSPNKD 74
+ G+++ ++S +KD
Sbjct: 151 EKGWQVTILSSDKD 164
>gi|313124192|ref|YP_004034451.1| DNA polymerase i [Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|312280755|gb|ADQ61474.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 887
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK R TP + + L YL+ +K M IK E+ EADD+IG +A + +
Sbjct: 70 FRTAMYKDYKGGRDKTPAELSEQLPYLREMLKDMGIKSYELANYEADDIIGTMAKKGAEA 129
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
G+++ VVS +KD L+ + + G
Sbjct: 130 GYEVAVVSGDKDLTQLASDHVTVYVTKSG 158
>gi|104774358|ref|YP_619338.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|116514452|ref|YP_813358.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|418035776|ref|ZP_12674218.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1519]
gi|103423439|emb|CAI98312.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|116093767|gb|ABJ58920.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|354689342|gb|EHE89340.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1519]
Length = 886
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK R TP + + L YL+ +K M IK E+ EADD+IG +A + +
Sbjct: 69 FRTAMYKDYKGGRDKTPAELSEQLPYLREMLKDMGIKSYELANYEADDIIGTMAKKGAEA 128
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
G+++ VVS +KD L+ + + G
Sbjct: 129 GYEVAVVSGDKDLTQLASDHVTVYVTKSG 157
>gi|423223209|ref|ZP_17209678.1| DNA polymerase I [Bacteroides cellulosilyticus CL02T12C19]
gi|392639310|gb|EIY33135.1| DNA polymerase I [Bacteroides cellulosilyticus CL02T12C19]
Length = 952
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A I ++EV G EADDVIG LA +
Sbjct: 80 FRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEADDVIGTLATEAGQQ 139
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++S ++ + R P+ GFE++
Sbjct: 140 GITTYMMTPDKDYGQLVSENVFMYR--PKHTGGFEVM 174
>gi|333981901|ref|YP_004511111.1| DNA polymerase I [Methylomonas methanica MC09]
gi|333805942|gb|AEF98611.1| DNA polymerase I [Methylomonas methanica MC09]
Length = 918
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH LY YK +RPP PD + ++ L I+A+ + +I GVEADDV+G LA +
Sbjct: 69 FRHDLYDQYKAHRPPMPDDLRVQIEPLHELIRALGLPLIIEHGVEADDVLGSLAQNAARQ 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCL 84
GF + + S +KD +Q+++ + L
Sbjct: 129 GFHVVISSGDKDMAQLVTDRITL 151
>gi|416083777|ref|ZP_11586899.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|348010514|gb|EGY50552.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
Length = 381
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA ++
Sbjct: 97 TFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQASK 156
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G K+ + + +KD +Q++ ++ L+
Sbjct: 157 NGQKVLISTGDKDMAQLVDDNIMLI 181
>gi|300811971|ref|ZP_07092429.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300497050|gb|EFK32114.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 887
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK R TP + + L YL+ +K M IK E+ EADD+IG +A + +
Sbjct: 70 FRTAMYKDYKGGRDKTPAELSEQLPYLREMLKDMGIKSYELANYEADDIIGTMAKKGAEA 129
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
G+++ VVS +KD L+ + + G
Sbjct: 130 GYEVAVVSGDKDLTQLASDHVTVYVTKSG 158
>gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
Length = 907
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR LYP YK NRP P +V ++ L I A K+ V GVEADDVIG LA ++
Sbjct: 65 TFRDDLYPQYKANRPSMPADLVAQIEPLHQLIAASGWKIAMVEGVEADDVIGTLARQASR 124
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
DG + V + +KD +Q++ + L+
Sbjct: 125 DGVRCIVATGDKDLAQLVDEHVTLI 149
>gi|423122885|ref|ZP_17110569.1| DNA polymerase I [Klebsiella oxytoca 10-5246]
gi|376391819|gb|EHT04487.1| DNA polymerase I [Klebsiella oxytoca 10-5246]
Length = 928
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHTMVKAMGLPLMAVPGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPGITLI 152
>gi|375129559|ref|YP_004991656.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
Length = 932
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR LYP YK RPP PD + ++ L I+AM + ++ + GVEADDVIG LA ++
Sbjct: 68 TFRDELYPEYKAQRPPMPDDLRCQIEPLHNVIRAMGLPLLSIEGVEADDVIGTLAHQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 AGIPVLISTGDKDMAQLVDDNVTLI 152
>gi|310814704|ref|YP_003962668.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
gi|308753439|gb|ADO41368.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
Length = 339
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FR+ +YP YK +RPP P+ + +A+ A +I E+ G EADD+I LA +
Sbjct: 78 ITFRNDIYPEYKAHRPPLPEDLRPQFPLTRAATAAFNIAYKEIEGFEADDIIATLAREAA 137
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLL 85
+ G ++ V+S +KD Q++ ++C+
Sbjct: 138 EAGGRVTVISSDKDLMQLVGPAVCMF 163
>gi|424789171|ref|ZP_18215867.1| DNA-directed DNA polymerase [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422798725|gb|EKU26775.1| DNA-directed DNA polymerase [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 922
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRPP PD + ++ + + A+ I ++ GVEADDVIG LA++ D
Sbjct: 63 FRDDLYAQYKANRPPMPDELRAQVEPMCQIVHALGISILREGGVEADDVIGTLALQGAGD 122
Query: 63 GFKIQVVSPNKD 74
G ++ + + +KD
Sbjct: 123 GLEVTISTGDKD 134
>gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 933
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRP PD + +Q + + A+ I ++ + GVEADDVIG LA+++ D
Sbjct: 63 FRDALYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQAAAD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLSVTISTGDKD 134
>gi|421079362|ref|ZP_15540306.1| DNA-directed DNA polymerase [Pectobacterium wasabiae CFBP 3304]
gi|401706068|gb|EJS96247.1| DNA-directed DNA polymerase [Pectobacterium wasabiae CFBP 3304]
Length = 929
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ +YK +RPP P+ + + ++ L +KAM + ++ V GVEADDVIG LAV++
Sbjct: 68 TFRDELFENYKAHRPPMPEDLREQIEPLHNMVKAMGLPLLAVSGVEADDVIGTLAVQAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ S+ L+
Sbjct: 128 AGKSVLISTGDKDMAQLVTPSVTLI 152
>gi|395234013|ref|ZP_10412244.1| DNA polymerase I [Enterobacter sp. Ag1]
gi|394731379|gb|EJF31160.1| DNA polymerase I [Enterobacter sp. Ag1]
Length = 928
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA+ +
Sbjct: 68 TFRDELFEDYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLALEAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPGVTLI 152
>gi|418028681|ref|ZP_12667235.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1632]
gi|354691519|gb|EHE91440.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1632]
Length = 896
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK R TP + + L YL+ +K M IK E+ EADD+IG +A + +
Sbjct: 79 FRTAMYKDYKGGRDKTPAELSEQLPYLREMLKDMGIKSYELANYEADDIIGTMAKKGAEA 138
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
G+++ VVS +KD L+ + + G
Sbjct: 139 GYEVAVVSGDKDLTQLASDHVTVYVTKSG 167
>gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 933
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRP PD + +Q + + A+ I ++ + GVEADDVIG LA+++ D
Sbjct: 63 FRDALYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQAAAD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLSVTISTGDKD 134
>gi|422844108|ref|ZP_16890818.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
gi|325685808|gb|EGD27881.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 889
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK R TP + + L YL+ +K M IK E+ EADD+IG +A + +
Sbjct: 72 FRTAMYKDYKGGRDKTPAELSEQLPYLREMLKDMGIKSYELANYEADDIIGTMAKKGAEA 131
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
G+++ VVS +KD L+ + + G
Sbjct: 132 GYEVAVVSGDKDLTQLASDHVTVYVTKSG 160
>gi|225374419|ref|ZP_03751640.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM
16841]
gi|225213657|gb|EEG96011.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM
16841]
Length = 907
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +Y YK R P + + + + +K +KAM + ++E G EADD++G +A RS +
Sbjct: 65 FRHKMYAEYKGTRKPMAEELREQVPLMKEMLKAMGVTIVEKGGYEADDILGTIAKRSEAE 124
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRI 87
G ++ VVS ++D L+ +RI
Sbjct: 125 GLEVSVVSGDRDLLQLATDHIKIRI 149
>gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
30120]
gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
30120]
Length = 934
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ SYK++RPP PD + ++ L + AM + ++ +PGVEADDVIG LA +
Sbjct: 68 TFRDELFESYKSHRPPMPDDLRAQIEPLHEMVAAMGLPLLVIPGVEADDVIGTLAREASS 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 KGMPVLISTGDKDMAQLVEPNITLI 152
>gi|197303212|ref|ZP_03168254.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC
29176]
gi|197297752|gb|EDY32310.1| DNA-directed DNA polymerase [Ruminococcus lactaris ATCC 29176]
Length = 871
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 52/86 (60%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y YK R P + + Q + +K +KAM+I++IE G+EADD++G ++ +
Sbjct: 64 TFRHEMYQEYKGTRKPMAEELRQQVPVIKEVLKAMNIEIIEQAGLEADDLLGTISHQCEK 123
Query: 62 DGFKIQVVSPNKDSQILSHSLCLLRI 87
+G + ++S ++D+ L+ +RI
Sbjct: 124 EGLDVSIISGDRDTLQLTTEHIKVRI 149
>gi|190571485|ref|YP_001975843.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
gi|213018887|ref|ZP_03334695.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
gi|190357757|emb|CAQ55209.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
gi|212995838|gb|EEB56478.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
Length = 842
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH+LY YK NR P+ ++ L+ +++A + E+ G EADD+I LA + +
Sbjct: 63 NFRHSLYSEYKANRVTPPEDLIPQFTILREAVEAFNFSYEEIEGYEADDIIATLAAKYAN 122
Query: 62 -DGFKIQVVSPNKD-SQILSHSLCLL 85
+ FK+ VVS +KD Q+L++++ +
Sbjct: 123 HEDFKVVVVSSDKDLFQLLNYNILIF 148
>gi|422021521|ref|ZP_16368033.1| DNA polymerase I [Providencia sneebia DSM 19967]
gi|414099379|gb|EKT61022.1| DNA polymerase I [Providencia sneebia DSM 19967]
Length = 928
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ SYK++RPP PD + + ++ L ++AM + ++ V GVEADDVIG LA ++
Sbjct: 68 TFRDELFESYKSHRPPMPDDLREQIEPLHEMVEAMGLPLLVVSGVEADDVIGTLARQASK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G + + + +KD +Q++ ++ L+
Sbjct: 128 NGIPVLISTGDKDMAQLVEPNITLI 152
>gi|422020130|ref|ZP_16366670.1| DNA polymerase I [Providencia alcalifaciens Dmel2]
gi|414101725|gb|EKT63322.1| DNA polymerase I [Providencia alcalifaciens Dmel2]
Length = 934
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ SYK++RPP PD + ++ L + AM + ++ +PGVEADDVIG LA +
Sbjct: 68 TFRDELFESYKSHRPPMPDDLRAQIEPLHEMVAAMGLPLLVIPGVEADDVIGTLAREASS 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 KGMPVLISTGDKDMAQLVEPNITLI 152
>gi|385874224|gb|AFI92744.1| DNA polymerase I [Pectobacterium sp. SCC3193]
Length = 929
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ +YK +RPP P+ + + ++ L +KAM + ++ V GVEADDVIG LAV++
Sbjct: 68 TFRDELFENYKAHRPPMPEDLREQIEPLHNMVKAMGLPLLAVSGVEADDVIGTLAVQAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ S+ L+
Sbjct: 128 AGKSVLISTGDKDMAQLVTPSVTLI 152
>gi|373449816|ref|ZP_09541914.1| DNA polymerase I [Wolbachia pipientis wAlbB]
gi|371932982|emb|CCE76900.1| DNA polymerase I [Wolbachia pipientis wAlbB]
Length = 842
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH+LY YK NR P+ ++ L+ +++A + E+ G EADD+I LA + +
Sbjct: 63 NFRHSLYSEYKANRVTPPEDLIPQFTILREAVEAFNFSYEEIEGYEADDIIATLAAKYAN 122
Query: 62 -DGFKIQVVSPNKD-SQILSHSLCLL 85
+ FK+ VVS +KD Q+L++++ +
Sbjct: 123 HEDFKVVVVSSDKDLFQLLNYNILIF 148
>gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541]
gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541]
Length = 934
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ SYK++RPP PD + + L ++AM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFESYKSHRPPMPDDLRAQIAPLHEMVEAMGLPLLVVPGVEADDVIGTLAREASS 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 KGMPVLISTGDKDMAQLVEPNITLI 152
>gi|157826228|ref|YP_001493948.1| DNA polymerase I [Rickettsia akari str. Hartford]
gi|157800186|gb|ABV75440.1| DNA polymerase I [Rickettsia akari str. Hartford]
Length = 872
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRPP P+ +V L ++ +++ ++E G EADD+I A ++
Sbjct: 66 NFRHHIYPEYKANRPPPPEDLVVQLPLVRDVASNLNLPILEKNGYEADDIIATFAAKTAA 125
Query: 62 DGFKIQVVSPNKD-SQILSHSL 82
G + V+S +KD Q++S ++
Sbjct: 126 LGEDVVVISSDKDLLQLMSENI 147
>gi|261823708|ref|YP_003261814.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
gi|261607721|gb|ACX90207.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
Length = 929
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ +YK +RPP P+ + + ++ L +KAM + ++ V GVEADDVIG LAV++
Sbjct: 68 TFRDELFENYKAHRPPMPEDLREQIEPLHNMVKAMGLPLLAVSGVEADDVIGTLAVQAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ S+ L+
Sbjct: 128 AGKSVLISTGDKDMAQLVTPSVTLI 152
>gi|428305528|ref|YP_007142353.1| DNA polymerase I [Crinalium epipsammum PCC 9333]
gi|428247063|gb|AFZ12843.1| DNA polymerase I [Crinalium epipsammum PCC 9333]
Length = 993
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH Y YK R TP+ + Q L+ ++A ++ ++ PG EADDV+G LA++
Sbjct: 88 TFRHEAYADYKAGRTETPEDFITDRQNLEELLRAFNLPIVTAPGYEADDVLGTLAIKGSA 147
Query: 62 DGFKIQVVSPNKD 74
G+++++V+ ++D
Sbjct: 148 AGYRVKIVTGDRD 160
>gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT]
gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT]
Length = 910
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK +RPP PD + + ++ L +I+AM ++ + GVEADDVIG LA ++
Sbjct: 63 TFRDDIYPDYKAHRPPMPDDLSRQIEPLHEAIRAMGWPLLMIDGVEADDVIGCLAQQAEA 122
Query: 62 DGFKIQVVSPNKD 74
G ++ + + +KD
Sbjct: 123 QGMQVVISTGDKD 135
>gi|387132501|ref|YP_006298473.1| DNA-directed DNA polymerase [Prevotella intermedia 17]
gi|386375349|gb|AFJ08547.1| DNA-directed DNA polymerase [Prevotella intermedia 17]
Length = 920
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 6/99 (6%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FRH +P YK R TP+ + + Y+K ++AM I +++V G EADD+IG +A +
Sbjct: 63 LTFRHEAFPEYKAQREETPEDIKLSVPYIKQILEAMRIPILQVDGFEADDIIGTVATLAG 122
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ ++ + R PR G+++V
Sbjct: 123 SKGITTFMLTPDKDYGQLIRENVYMYR--PRHGGGYDVV 159
>gi|353328403|ref|ZP_08970730.1| DNA polymerase I [Wolbachia endosymbiont wVitB of Nasonia
vitripennis]
Length = 842
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH+LY YK NR P+ ++ L+ +++A + E+ G EADD+I LA + +
Sbjct: 63 NFRHSLYSEYKANRVTPPEDLIPQFTILREAVEAFNFSYEEIEGYEADDIIATLAAKYAN 122
Query: 62 -DGFKIQVVSPNKD-SQILSHSLCLL 85
+ FK+ VVS +KD Q+L++++ +
Sbjct: 123 HEDFKVVVVSSDKDLFQLLNYNILIF 148
>gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
DSM 14838]
Length = 941
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A I ++EV G EADDVIG LA +
Sbjct: 69 FRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEADDVIGTLATEAGQQ 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++S ++ + R P+ GFE++
Sbjct: 129 GITTYMMTPDKDYGQLVSENVFMYR--PKHTGGFEVM 163
>gi|440758546|ref|ZP_20937710.1| DNA polymerase I [Pantoea agglomerans 299R]
gi|436427720|gb|ELP25393.1| DNA polymerase I [Pantoea agglomerans 299R]
Length = 928
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L ++AM + ++ V GVEADDVIG LA+ +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHEMVRAMGLPLLAVSGVEADDVIGTLALEAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 KGLSVLISTGDKDMAQLVTPAITLI 152
>gi|421484077|ref|ZP_15931649.1| DNA polymerase I [Achromobacter piechaudii HLE]
gi|400197784|gb|EJO30748.1| DNA polymerase I [Achromobacter piechaudii HLE]
Length = 905
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP YK++RPP P+ + + ++ + +++A+ V+ + GVEADDVIG LA R+ +
Sbjct: 65 FRDDLYPEYKSHRPPMPEDLAEQIEPIHRAVRALGWPVLAIEGVEADDVIGTLAKRAAEH 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
V + +KD +Q+++ + L+
Sbjct: 125 DVHTIVSTGDKDLAQLVNSHVTLV 148
>gi|383501239|ref|YP_005414598.1| DNA polymerase I [Rickettsia australis str. Cutlack]
gi|378932250|gb|AFC70755.1| DNA polymerase I [Rickettsia australis str. Cutlack]
Length = 872
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRPP P+ +V L ++ +++ ++E G EADD+I A ++
Sbjct: 66 NFRHHIYPEYKANRPPPPEDLVVQLPLVRDVASNLNLPILEKNGYEADDIIATFAAKTAA 125
Query: 62 DGFKIQVVSPNKD-SQILSHSL 82
G + V+S +KD Q++S ++
Sbjct: 126 LGEDVVVISSDKDLLQLMSENI 147
>gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB]
gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB]
Length = 928
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L ++AM + ++ V GVEADDVIG LA+ +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHEMVRAMGLPLLAVSGVEADDVIGTLALEAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 KGLSVLISTGDKDMAQLVTPAITLI 152
>gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893]
gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893]
Length = 911
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR+ LY YK RPP PD + +Q + ++AM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRNDLYEDYKATRPPMPDDLAVQIQPIHDMVRAMGLPLLIVSGVEADDVIGTLAHEATS 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q++S + L+
Sbjct: 128 KGIDVVVSTGDKDMAQLVSDHVTLI 152
>gi|340350278|ref|ZP_08673274.1| DNA-directed DNA polymerase I [Prevotella nigrescens ATCC 33563]
gi|339608807|gb|EGQ13691.1| DNA-directed DNA polymerase I [Prevotella nigrescens ATCC 33563]
Length = 942
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 6/99 (6%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FRH +P YK R TP+ + + Y+K ++AM I +++V G EADD+IG +A +
Sbjct: 84 LTFRHEAFPEYKAQREETPEDIKLSVPYIKQILEAMRIPILQVDGFEADDIIGTVATLAG 143
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ ++ + R PR G+++V
Sbjct: 144 SKGITTFMLTPDKDYGQLIRENVYMYR--PRHGGGYDVV 180
>gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202]
gi|387869289|ref|YP_005700758.1| DNA polymerase I [Edwardsiella tarda FL6-60]
gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202]
gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60]
Length = 930
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + + + L ++AM + ++ VPGVEADDVIG LA R+
Sbjct: 68 TFRDELFAEYKSHRPPMPDDLREQIAPLHQMVEAMGLPLLVVPGVEADDVIGTLARRAEL 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRHVLISTGDKDMAQLVTPNITLI 152
>gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
Length = 928
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTSNITLI 152
>gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
Length = 920
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 58/97 (59%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +P YK R TP+ + + +K ++AM I +++V G EADD+IG +A R D
Sbjct: 65 FRHDAFPEYKAQREETPEDIKLSVPLIKQVLEAMHIPILQVDGFEADDIIGTIATRFGAD 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ ++ + R PR G+E++
Sbjct: 125 GIDTFMLTPDKDYGQLIGPNVFMYR--PRHGGGYEIL 159
>gi|400405845|ref|YP_006588704.1| DNA polymerase I [secondary endosymbiont of Ctenarytaina eucalypti]
gi|400364208|gb|AFP85276.1| DNA polymerase I [secondary endosymbiont of Ctenarytaina eucalypti]
Length = 928
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ +YK++RPP P+ + + L +KAM + ++ V GVEADDVIG LA+ +V
Sbjct: 68 TFRDVLFENYKSHRPPMPENLRLQIAPLHKIVKAMGLPLLAVNGVEADDVIGTLALAAVK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G + + + +KD +Q++S + L+
Sbjct: 128 NGHYVLISTSDKDMAQLVSPKITLI 152
>gi|383307470|ref|YP_005360281.1| DNA polymerase I [Mycobacterium tuberculosis RGTB327]
gi|380721423|gb|AFE16532.1| DNA polymerase I [Mycobacterium tuberculosis RGTB327]
Length = 922
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 62 FRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQAENE 121
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++D+ Q++S + +L
Sbjct: 122 GYRVLVVTGDRDALQLVSDDVTVL 145
>gi|254550633|ref|ZP_05141080.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length = 814
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 62 FRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQAENE 121
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++D+ Q++S + +L
Sbjct: 122 GYRVLVVTGDRDALQLVSDDVTVL 145
>gi|385329229|ref|YP_005883532.1| DNA polymerase I [Neisseria meningitidis alpha710]
gi|385341173|ref|YP_005895044.1| DNA polymerase I [Neisseria meningitidis M01-240149]
gi|385856471|ref|YP_005902983.1| DNA polymerase I [Neisseria meningitidis NZ-05/33]
gi|416189242|ref|ZP_11615204.1| DNA polymerase I [Neisseria meningitidis M0579]
gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710]
gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579]
gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149]
gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33]
Length = 929
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++P YK RPP PD + + L ++ + V+ +P VEADDVIG LA + +
Sbjct: 66 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLIGWPVLVIPQVEADDVIGTLAAMAGE 125
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + V + +KD +Q+++ + L+
Sbjct: 126 AGWNVVVSTGDKDMAQLVNERVTLV 150
>gi|333897428|ref|YP_004471302.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
gi|38146977|gb|AAR11873.1| DNA polymerase I [Thermoanaerobacterium thermosulfurigenes]
gi|333112693|gb|AEF17630.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
Length = 867
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y +YK R P+ +++ + LK I A +IK IE+ G EADD+IG ++ + +
Sbjct: 64 FRHKEYSAYKGTRQSMPEELIEQVDILKDVINAFNIKTIEIEGFEADDIIGTVSKIASES 123
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
G + +V+ ++D+ L + ++I +G
Sbjct: 124 GMDVLIVTGDRDALQLVSANVKVKICKKG 152
>gi|222111840|ref|YP_002554104.1| DNA polymerase I [Acidovorax ebreus TPSY]
gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY]
Length = 922
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP YK +R P PD + ++ + ++ + V+ +PGVEADDVIG LA +
Sbjct: 71 FRDALYPEYKQHRAPMPDDLRAQIEPIHEVVRLLGWPVLCIPGVEADDVIGTLAATAAGQ 130
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G ++ + S +KD SQ+++ + ++
Sbjct: 131 GMQVVISSGDKDLSQLVNEHITII 154
>gi|390935243|ref|YP_006392748.1| DNA polymerase I [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570744|gb|AFK87149.1| DNA polymerase I [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 867
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y +YK R P+ +++ + LK I A +IK IE+ G EADD+IG ++ + +
Sbjct: 64 FRHKEYSAYKGTRQSMPEELIEQVDILKDVINAFNIKTIEIEGFEADDIIGTVSKIASES 123
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
G + +V+ ++D+ L + ++I +G
Sbjct: 124 GMDVLIVTGDRDALQLVSANVKVKICKKG 152
>gi|238921711|ref|YP_002935226.1| DNA polymerase I, putative [Edwardsiella ictaluri 93-146]
gi|238871280|gb|ACR70991.1| DNA polymerase I, putative [Edwardsiella ictaluri 93-146]
Length = 930
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + + + L ++AM + ++ VPGVEADDVIG LA R+
Sbjct: 68 TFRDELFAEYKSHRPPMPDDLREQIAPLHQMVEAMGLPLLVVPGVEADDVIGTLARRAEL 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRHVLISTGDKDMAQLVTPNITLI 152
>gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH]
gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH]
Length = 930
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA+++
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLALQASSL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDDNIMLI 152
>gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
Length = 899
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FR+ + P+YK NRP PD + ++ A+++ IE PGVEADDVI LA R+ +
Sbjct: 63 SFRNEIDPAYKANRPEAPDDLQVQFPLVREVADALAVPRIEEPGVEADDVIATLASRARE 122
Query: 62 DGFKIQVVSPNKD-SQILSHSLCL 84
G+++ VV+ +KD Q++ L L
Sbjct: 123 QGWEVVVVTGDKDFGQLVDERLSL 146
>gi|269958395|ref|YP_003328182.1| DNA polymerase I [Anaplasma centrale str. Israel]
gi|269848224|gb|ACZ48868.1| DNA polymerase I [Anaplasma centrale str. Israel]
Length = 849
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRP P+ +++ L+ ++ A+ I EV EADDVI L+ +
Sbjct: 63 NFRHAMYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVQNFEADDVIATLSTKYAS 122
Query: 62 DGFKIQVVSPNKD 74
++++V+ +KD
Sbjct: 123 QDVQVRIVTADKD 135
>gi|385998403|ref|YP_005916701.1| DNA polymerase I [Mycobacterium tuberculosis CTRI-2]
gi|344219449|gb|AEN00080.1| DNA polymerase I [Mycobacterium tuberculosis CTRI-2]
Length = 904
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 79 FRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQAENE 138
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++D+ Q++S + +L
Sbjct: 139 GYRVLVVTGDRDALQLVSDDVTVL 162
>gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
Length = 892
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH + YK NRPP + M + Y++ ++ ++ ++E G EADD+IG LAV++
Sbjct: 66 TFRHEIDREYKANRPPMAEDMAVQIPYIRKIVEGFNLPIVEQQGYEADDMIGTLAVKAEK 125
Query: 62 DGFKIQVVSPNKD 74
+GF +VS +KD
Sbjct: 126 EGFDTVIVSGDKD 138
>gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4]
gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4]
Length = 892
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR+ +Y YK NR PD + Q ++ +K +++A +I +E+ G EADD+IG +A +
Sbjct: 67 TFRNEIYADYKANRAAMPDDLRQQIEPIKEAVRAFNIPALELAGFEADDIIGTIARDCEE 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G VV+ +KD QI+S ++ LL
Sbjct: 127 KGMAAVVVTGDKDLMQIVSDNVTLL 151
>gi|438002756|ref|YP_007272499.1| DNA polymerase I [Tepidanaerobacter acetatoxydans Re1]
gi|432179550|emb|CCP26523.1| DNA polymerase I [Tepidanaerobacter acetatoxydans Re1]
Length = 347
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y +YK RP TPD ++ LK +KA++I IE G EADD++G ++ + +
Sbjct: 64 FRHDEYAAYKATRPKTPDELIGQFDILKEILKALNINFIEADGFEADDILGTISKKGEQE 123
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G +V+ +KD+ Q++S + +L
Sbjct: 124 GIFSIIVTGDKDALQLVSSNTNVL 147
>gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS]
gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS]
Length = 950
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH Y +YK NRP PD ++ L ++ I+A I +I +PG EADD+IG A R +
Sbjct: 98 TFRHEKYKAYKANRPAPPDDLINQLDNIRELIRACGIPLIIMPGFEADDLIGTTA-RKFE 156
Query: 62 DGFKIQVVSPNKDSQILSH 80
++ +V+P+KD L H
Sbjct: 157 ADCQVFIVTPDKDMSQLVH 175
>gi|218132195|ref|ZP_03460999.1| hypothetical protein BACPEC_00052 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992916|gb|EEC58916.1| DNA-directed DNA polymerase [[Bacteroides] pectinophilus ATCC
43243]
Length = 879
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 51/85 (60%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH ++ YK R P P+ + Q + +K ++AM I++++ G EADD++G +A S +
Sbjct: 64 FRHKMFAEYKGTRKPMPEELRQQVPLIKEVLEAMGIEIVQKEGYEADDILGTIAKHSEKN 123
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRI 87
G + +VS ++D ++ ++RI
Sbjct: 124 GLDVSIVSGDRDILQIATEHIMIRI 148
>gi|445116818|ref|ZP_21378649.1| DNA polymerase I [Prevotella nigrescens F0103]
gi|444839987|gb|ELX67031.1| DNA polymerase I [Prevotella nigrescens F0103]
Length = 942
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 6/99 (6%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FRH +P YK R TP+ + + Y+K ++AM I +++V G EADD+IG +A +
Sbjct: 84 LTFRHEAFPEYKAQREETPEDIKLSVPYIKQILEAMRIPILQVDGFEADDIIGTVATLAG 143
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ ++ + R PR G+++V
Sbjct: 144 SKGITTFMLTPDKDYGQLIRENVYMYR--PRHGGGYDVV 180
>gi|255693278|ref|ZP_05416953.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
gi|260620957|gb|EEX43828.1| DNA-directed DNA polymerase [Bacteroides finegoldii DSM 17565]
Length = 930
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + YK R TP+ + + +K I+A I ++EVPG EADDVIG LA +
Sbjct: 69 FRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGTLATEAGRQ 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++S + + R P+ GFE++
Sbjct: 129 GITTYMMTPDKDYGQLVSDKVFMYR--PKHTGGFEVM 163
>gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
Length = 933
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRP PD + +Q + + A+ I ++ + GVEADDVIG LA+++ D
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQAAAD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLSVTISTGDKD 134
>gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB 702]
gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB 4381]
Length = 933
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRP PD + +Q + + A+ I ++ + GVEADDVIG LA+++ D
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQAAAD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLSVTISTGDKD 134
>gi|205374551|ref|ZP_03227347.1| DNA polymerase I [Bacillus coahuilensis m4-4]
Length = 876
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + YK R TP + + +++ +KA I E+P EADD+IG L+ ++ D
Sbjct: 66 FRHETFTEYKGGRQKTPPELSEQFPFIRELLKAYGISHYELPNYEADDIIGTLSKKAEQD 125
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF ++V+S +KD L+ + I +G
Sbjct: 126 GFSVKVISGDKDLTQLASEHTTVMITKKG 154
>gi|333902486|ref|YP_004476359.1| DNA polymerase I [Pseudomonas fulva 12-X]
gi|333117751|gb|AEF24265.1| DNA polymerase I [Pseudomonas fulva 12-X]
Length = 951
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK NRPP PD + ++ L AS++ + + ++ V GVEADDVIG LA +S
Sbjct: 65 TFRDELFADYKANRPPMPDELRLQVEPLHASVRGLGLPLLCVEGVEADDVIGTLARQSAA 124
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G + + + +KD +Q++ + L+
Sbjct: 125 EGRDVVISTGDKDMAQLVCKHVTLV 149
>gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus]
Length = 834
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
++FRH Y +YK R PTP+ + L +K + + +EVPG EADDV+ LA ++
Sbjct: 72 LSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVLATLAKKAE 131
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+G+++++++ ++D Q++S C+ + P G
Sbjct: 132 KEGYEVRILTADRDLYQLVSD--CVAVLHPEG 161
>gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense
MSR-1]
Length = 925
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
++FR+ +YP YK +RPP P+ +V ++ + A ++ +E+ G EADD+I A ++V
Sbjct: 69 LSFRNDIYPEYKAHRPPAPEDLVPQFPLIRDVVAAFNVPSVEMEGFEADDLIATYATQAV 128
Query: 61 DDGFKIQVVSPNKD 74
G ++ +VS +KD
Sbjct: 129 ARGARVTIVSSDKD 142
>gi|423230541|ref|ZP_17216945.1| DNA polymerase I [Bacteroides dorei CL02T00C15]
gi|423244250|ref|ZP_17225325.1| DNA polymerase I [Bacteroides dorei CL02T12C06]
gi|392630685|gb|EIY24671.1| DNA polymerase I [Bacteroides dorei CL02T00C15]
gi|392642431|gb|EIY36197.1| DNA polymerase I [Bacteroides dorei CL02T12C06]
Length = 971
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A I ++EVPG EADDVIG LA +
Sbjct: 66 FRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGTLATEAGKR 125
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ ++ + R P+ GFE++
Sbjct: 126 GITTYMMTPDKDYGQLVGGNVFMYR--PKHTGGFEVM 160
>gi|423313082|ref|ZP_17291018.1| DNA polymerase I [Bacteroides vulgatus CL09T03C04]
gi|392686296|gb|EIY79602.1| DNA polymerase I [Bacteroides vulgatus CL09T03C04]
Length = 971
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A I ++EVPG EADDVIG LA +
Sbjct: 66 FRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGTLATEAGKR 125
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ ++ + R P+ GFE++
Sbjct: 126 GITTYMMTPDKDYGQLVGGNVFMYR--PKHTGGFEVM 160
>gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118]
gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118]
Length = 933
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRP PD + +Q + + A+ I ++ + GVEADDVIG LA++ D
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 63 GFKIQVVSPNKD 74
G ++ + + +KD
Sbjct: 123 GLQVTISTGDKD 134
>gi|433626721|ref|YP_007260350.1| Putative DNA polymerase I PolA [Mycobacterium canettii CIPT
140060008]
gi|432154327|emb|CCK51559.1| Putative DNA polymerase I PolA [Mycobacterium canettii CIPT
140060008]
Length = 904
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 79 FRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQAENE 138
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++D+ Q++S + +L
Sbjct: 139 GYRVLVVTGDRDALQLVSDDVTVL 162
>gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
gi|345517007|ref|ZP_08796487.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
Length = 971
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A I ++EVPG EADDVIG LA +
Sbjct: 66 FRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGTLATEAGKR 125
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ ++ + R P+ GFE++
Sbjct: 126 GITTYMMTPDKDYGQLVGGNVFMYR--PKHTGGFEVM 160
>gi|432878270|ref|ZP_20095680.1| DNA polymerase I [Escherichia coli KTE154]
gi|431417054|gb|ELG99524.1| DNA polymerase I [Escherichia coli KTE154]
Length = 928
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRSVLISTGDKDMAQLVTPNITLI 152
>gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
Length = 852
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 48/71 (67%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R + P+YK +R P+ +V ++ ++A+++ V+EVPG EADDVIG LA R+ +G
Sbjct: 26 RQKIDPNYKAHREGPPEDLVPQFALIRKVVEALNLPVLEVPGWEADDVIGTLAARAKAEG 85
Query: 64 FKIQVVSPNKD 74
F +QVV+ +KD
Sbjct: 86 FCVQVVTGDKD 96
>gi|387131167|ref|YP_006294057.1| DNA polymerase I [Methylophaga sp. JAM7]
gi|386272456|gb|AFJ03370.1| DNA polymerase I [Methylophaga sp. JAM7]
Length = 904
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH LY YK RPP PD + + + + + AM + ++ + GVEADDVIG LA ++
Sbjct: 67 TFRHDLYSEYKATRPPMPDDLREQVTPIHDIVTAMGLPLLVIDGVEADDVIGTLARQATQ 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G + + + +KD +Q++S + L+
Sbjct: 127 NGIETVISTGDKDMAQLVSEHVTLV 151
>gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
Length = 971
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A I ++EVPG EADDVIG LA +
Sbjct: 66 FRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGTLATEAGKR 125
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ ++ + R P+ GFE++
Sbjct: 126 GITTYMMTPDKDYGQLVGGNVFMYR--PKHTGGFEVM 160
>gi|227113276|ref|ZP_03826932.1| DNA polymerase I [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 929
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ +YK +RPP P+ + + ++ L +KAM + ++ V GVEADDVIG LAV++
Sbjct: 68 TFRDELFENYKAHRPPMPEDLREQIEPLHQMVKAMGLPLLAVSGVEADDVIGTLAVQAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ S+ L+
Sbjct: 128 AGKPVLISTGDKDMAQLVTPSVTLI 152
>gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17]
gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17]
Length = 926
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR+ LYP YK NRPP P+ + ++ + ++ M + ++ V GVEADDVIG LA +
Sbjct: 68 TFRNDLYPDYKANRPPMPEDLAVQIEPIHQIVRHMGLPLLIVDGVEADDVIGTLAHEATS 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q++S + L+
Sbjct: 128 KGIDVVVSTGDKDMAQLVSAHVTLI 152
>gi|108759777|ref|YP_631312.1| DNA polymerase I [Myxococcus xanthus DK 1622]
gi|108463657|gb|ABF88842.1| DNA polymerase I [Myxococcus xanthus DK 1622]
Length = 908
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 48/71 (67%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R + P+YK NR P+ +V ++ ++A+++ V+EV G EADDVIG LAV++ +G
Sbjct: 74 RQKIDPTYKANREGPPEDLVPQFALIRRVVEAINVPVLEVAGWEADDVIGTLAVKAKQEG 133
Query: 64 FKIQVVSPNKD 74
F +QVV+ +KD
Sbjct: 134 FCVQVVTGDKD 144
>gi|339631685|ref|YP_004723327.1| DNA polymerase I [Mycobacterium africanum GM041182]
gi|339331041|emb|CCC26713.1| putative DNA polymerase I POLA [Mycobacterium africanum GM041182]
Length = 904
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 79 FRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQAENE 138
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++D+ Q++S + +L
Sbjct: 139 GYRVLVVTGDRDALQLVSDDVTVL 162
>gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
Length = 971
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A I ++EVPG EADDVIG LA +
Sbjct: 66 FRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGTLATEAGKR 125
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ ++ + R P+ GFE++
Sbjct: 126 GITTYMMTPDKDYGQLVGGNVFMYR--PKHTGGFEVM 160
>gi|15608767|ref|NP_216145.1| Probable DNA polymerase I PolA [Mycobacterium tuberculosis H37Rv]
gi|15841084|ref|NP_336121.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
gi|31792815|ref|NP_855308.1| DNA polymerase I [Mycobacterium bovis AF2122/97]
gi|121637536|ref|YP_977759.1| DNA polymerase I [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|148661424|ref|YP_001282947.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
gi|148822836|ref|YP_001287590.1| DNA polymerase I [Mycobacterium tuberculosis F11]
gi|167968418|ref|ZP_02550695.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
gi|224990011|ref|YP_002644698.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
gi|253799333|ref|YP_003032334.1| DNA polymerase I [Mycobacterium tuberculosis KZN 1435]
gi|254231830|ref|ZP_04925157.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
gi|254364479|ref|ZP_04980525.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
gi|289447237|ref|ZP_06436981.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
gi|289574296|ref|ZP_06454523.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
gi|289761777|ref|ZP_06521155.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
gi|297634182|ref|ZP_06951962.1| DNA polymerase I [Mycobacterium tuberculosis KZN 4207]
gi|297731169|ref|ZP_06960287.1| DNA polymerase I [Mycobacterium tuberculosis KZN R506]
gi|306775815|ref|ZP_07414152.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
gi|306779627|ref|ZP_07417964.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
gi|306784359|ref|ZP_07422681.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
gi|306788727|ref|ZP_07427049.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
gi|306793064|ref|ZP_07431366.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
gi|306797446|ref|ZP_07435748.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
gi|306803324|ref|ZP_07439992.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
gi|306807906|ref|ZP_07444574.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
gi|306967723|ref|ZP_07480384.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
gi|306971921|ref|ZP_07484582.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
gi|307084209|ref|ZP_07493322.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
gi|313658501|ref|ZP_07815381.1| DNA polymerase I [Mycobacterium tuberculosis KZN V2475]
gi|375296578|ref|YP_005100845.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207]
gi|378771370|ref|YP_005171103.1| DNA polymerase I [Mycobacterium bovis BCG str. Mexico]
gi|392386300|ref|YP_005307929.1| polA [Mycobacterium tuberculosis UT205]
gi|392432789|ref|YP_006473833.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
gi|397673483|ref|YP_006515018.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
gi|422812615|ref|ZP_16860999.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A]
gi|449063687|ref|YP_007430770.1| DNA polymerase I [Mycobacterium bovis BCG str. Korea 1168P]
gi|61223052|sp|P0A550.1|DPO1_MYCTU RecName: Full=DNA polymerase I; Short=POL I
gi|61223053|sp|P0A551.1|DPO1_MYCBO RecName: Full=DNA polymerase I; Short=POL I
gi|416117|gb|AAB46393.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
gi|13881298|gb|AAK45935.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
gi|31618405|emb|CAD96323.1| DNA polymerase I polA [Mycobacterium bovis AF2122/97]
gi|121493183|emb|CAL71654.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|124600889|gb|EAY59899.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
gi|134149993|gb|EBA42038.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
gi|148505576|gb|ABQ73385.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
gi|148721363|gb|ABR05988.1| DNA polymerase I polA [Mycobacterium tuberculosis F11]
gi|224773124|dbj|BAH25930.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
gi|253320836|gb|ACT25439.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435]
gi|289420195|gb|EFD17396.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
gi|289538727|gb|EFD43305.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
gi|289709283|gb|EFD73299.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
gi|308215730|gb|EFO75129.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
gi|308327428|gb|EFP16279.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
gi|308330907|gb|EFP19758.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
gi|308334742|gb|EFP23593.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
gi|308338519|gb|EFP27370.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
gi|308342190|gb|EFP31041.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
gi|308345716|gb|EFP34567.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
gi|308350015|gb|EFP38866.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
gi|308354652|gb|EFP43503.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
gi|308358608|gb|EFP47459.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
gi|308366154|gb|EFP55005.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
gi|323719889|gb|EGB29002.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A]
gi|328459083|gb|AEB04506.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207]
gi|341601554|emb|CCC64227.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Moreau RDJ]
gi|356593691|gb|AET18920.1| DNA polymerase I [Mycobacterium bovis BCG str. Mexico]
gi|378544851|emb|CCE37126.1| polA [Mycobacterium tuberculosis UT205]
gi|379027852|dbj|BAL65585.1| DNA polymerase I [Mycobacterium tuberculosis str. Erdman = ATCC
35801]
gi|392054198|gb|AFM49756.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
gi|395138388|gb|AFN49547.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
gi|440581095|emb|CCG11498.1| putative DNA POLYMERASE I POLA [Mycobacterium tuberculosis 7199-99]
gi|444895137|emb|CCP44393.1| Probable DNA polymerase I PolA [Mycobacterium tuberculosis H37Rv]
gi|449032195|gb|AGE67622.1| DNA polymerase I [Mycobacterium bovis BCG str. Korea 1168P]
gi|740010|prf||2004291B DNA polymerase I
Length = 904
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 79 FRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQAENE 138
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++D+ Q++S + +L
Sbjct: 139 GYRVLVVTGDRDALQLVSDDVTVL 162
>gi|384425931|ref|YP_005635288.1| DNA polymerase I [Xanthomonas campestris pv. raphani 756C]
gi|341935031|gb|AEL05170.1| DNA polymerase I [Xanthomonas campestris pv. raphani 756C]
Length = 927
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRP PD + +Q + + A+ I ++ + GVEADDVIG LA++ D
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGASD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLAVTISTGDKD 134
>gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
Length = 971
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A I ++EVPG EADDVIG LA +
Sbjct: 66 FRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGTLATEAGKR 125
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ ++ + R P+ GFE++
Sbjct: 126 GITTYMMTPDKDYGQLVGGNVFMYR--PKHTGGFEVM 160
>gi|345514278|ref|ZP_08793791.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
Length = 971
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A I ++EVPG EADDVIG LA +
Sbjct: 66 FRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGTLATEAGKR 125
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ ++ + R P+ GFE++
Sbjct: 126 GITTYMMTPDKDYGQLVGGNVFMYR--PKHTGGFEVM 160
>gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100]
gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris]
Length = 927
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRP PD + +Q + + A+ I ++ + GVEADDVIG LA++ D
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGASD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLAVTISTGDKD 134
>gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE]
gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE]
Length = 930
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V G+EADDVIG LA+++
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQASRL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ +++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDNNIMLI 152
>gi|432871788|ref|ZP_20091782.1| DNA polymerase I [Escherichia coli KTE147]
gi|431407283|gb|ELG90495.1| DNA polymerase I [Escherichia coli KTE147]
Length = 928
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 SGRPVLISTGDKDMAQLVTPNITLI 152
>gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
Length = 927
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRP PD + +Q + + A+ I ++ + GVEADDVIG LA++ D
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGASD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLAVTISTGDKD 134
>gi|289443081|ref|ZP_06432825.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
gi|289569674|ref|ZP_06449901.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
gi|289416000|gb|EFD13240.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
gi|289543428|gb|EFD47076.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
Length = 904
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 79 FRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQAENE 138
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++D+ Q++S + +L
Sbjct: 139 GYRVLVVTGDRDALQLVSDDVTVL 162
>gi|289750174|ref|ZP_06509552.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
gi|289753716|ref|ZP_06513094.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
gi|289690761|gb|EFD58190.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
gi|289694303|gb|EFD61732.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
Length = 904
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 79 FRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQAENE 138
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++D+ Q++S + +L
Sbjct: 139 GYRVLVVTGDRDALQLVSDDVTVL 162
>gi|289745934|ref|ZP_06505312.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
gi|289757731|ref|ZP_06517109.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
gi|294996578|ref|ZP_06802269.1| DNA polymerase I [Mycobacterium tuberculosis 210]
gi|298525125|ref|ZP_07012534.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
gi|385991028|ref|YP_005909326.1| DNA polymerase I [Mycobacterium tuberculosis CCDC5180]
gi|385994630|ref|YP_005912928.1| DNA polymerase I [Mycobacterium tuberculosis CCDC5079]
gi|424803966|ref|ZP_18229397.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148]
gi|424947349|ref|ZP_18363045.1| DNA polymerase I [Mycobacterium tuberculosis NCGM2209]
gi|289686462|gb|EFD53950.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
gi|289713295|gb|EFD77307.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
gi|298494919|gb|EFI30213.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
gi|326903242|gb|EGE50175.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148]
gi|339294584|gb|AEJ46695.1| DNA polymerase I [Mycobacterium tuberculosis CCDC5079]
gi|339298221|gb|AEJ50331.1| DNA polymerase I [Mycobacterium tuberculosis CCDC5180]
gi|358231864|dbj|GAA45356.1| DNA polymerase I [Mycobacterium tuberculosis NCGM2209]
Length = 904
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 79 FRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQAENE 138
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++D+ Q++S + +L
Sbjct: 139 GYRVLVVTGDRDALQLVSDDVTVL 162
>gi|145640969|ref|ZP_01796551.1| DNA polymerase I [Haemophilus influenzae R3021]
gi|145274483|gb|EDK14347.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
Length = 635
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V G+EADDVIG LA+++
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQASSL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDDNIMLI 152
>gi|88800524|ref|ZP_01116087.1| DNA polymerase I [Reinekea blandensis MED297]
gi|88776755|gb|EAR07967.1| DNA polymerase I [Reinekea sp. MED297]
Length = 933
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR+ +Y YK NRPP P+ + + ++ + ++AM + ++ +PGVEADDVIG LA ++
Sbjct: 67 TFRNEMYDQYKANRPPMPEELREQIEPIHDCVRAMGLPLLCIPGVEADDVIGTLAAQATS 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + +KD +Q++S + L+
Sbjct: 127 CGRDCVISTGDKDMAQLVSPHVTLI 151
>gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
Length = 921
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FR LYP+YK +RPP P+ +V ++ + +A S+ IE G+EADD+I + +++
Sbjct: 74 SFRQDLYPAYKAHRPPPPEDLVPQFPLIREATRAFSVPSIEQEGLEADDIIACYSRVALE 133
Query: 62 DGFKIQVVSPNKD 74
GF++ V S +KD
Sbjct: 134 RGFQVTVYSSDKD 146
>gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
Length = 971
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A I ++EVPG EADDVIG LA +
Sbjct: 66 FRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGTLATEAGKR 125
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ ++ + R P+ GFE++
Sbjct: 126 GITTYMMTPDKDYGQLVGGNVFMYR--PKHTGGFEVM 160
>gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4]
gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4]
Length = 922
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ LY YK +RPP PD + ++ L I+A+ + +I +PGVEADDVIG +A ++ +
Sbjct: 69 FRNDLYEEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGTIARQASRE 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
+ + + +KD +Q++ ++ L+
Sbjct: 129 NRAVLISTGDKDMAQLVDENITLI 152
>gi|260753224|ref|YP_003226117.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|258552587|gb|ACV75533.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
Length = 921
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FR LYP+YK +RPP P+ +V ++ + +A S+ IE G+EADD+I + +++
Sbjct: 74 SFRQDLYPAYKAHRPPPPEDLVPQFPLIREATRAFSVPSIEQEGLEADDIIACYSRVALE 133
Query: 62 DGFKIQVVSPNKD 74
GF++ V S +KD
Sbjct: 134 RGFQVTVYSSDKD 146
>gi|189183413|ref|YP_001937198.1| DNA polymerase I [Orientia tsutsugamushi str. Ikeda]
gi|189180184|dbj|BAG39964.1| DNA polymerase I (POL I) [Orientia tsutsugamushi str. Ikeda]
Length = 889
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YKN+RP P + ++ +K ++I IE+ GVEADDVI LA + +
Sbjct: 68 NFRHKIYPEYKNHRPELPSELKIQFPLVREIVKYLNISAIEMEGVEADDVIASLANKFGN 127
Query: 62 DGFKIQVVSPNKD 74
+I +VS +KD
Sbjct: 128 ASDEIIIVSSDKD 140
>gi|404494541|ref|YP_006718647.1| ribonuclease H [Pelobacter carbinolicus DSM 2380]
gi|77546537|gb|ABA90099.1| ribonuclease H [Pelobacter carbinolicus DSM 2380]
Length = 480
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK +R PD + + Y++ ++A++I +E PG EADDVI L R D
Sbjct: 68 FRREIYSEYKAHRDAMPDELAPQIPYIRQILQALNIPALEAPGFEADDVIATLGRRHAAD 127
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G ++ VV+ +KD QI+ + LL
Sbjct: 128 GLQVTVVTGDKDLMQIVGDRIELL 151
>gi|397676861|ref|YP_006518399.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 29191]
gi|395397550|gb|AFN56877.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 29191]
Length = 921
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FR LYP+YK +RPP P+ +V ++ + +A S+ IE G+EADD+I + +++
Sbjct: 74 SFRQDLYPAYKAHRPPPPEDLVPQFPLIREATRAFSVPSIEQEGLEADDIIACYSRVALE 133
Query: 62 DGFKIQVVSPNKD 74
GF++ V S +KD
Sbjct: 134 RGFQVTVYSSDKD 146
>gi|332799559|ref|YP_004461058.1| DNA polymerase I [Tepidanaerobacter acetatoxydans Re1]
gi|332697294|gb|AEE91751.1| DNA polymerase I [Tepidanaerobacter acetatoxydans Re1]
Length = 864
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y +YK RP TPD ++ LK +KA++I IE G EADD++G ++ + +
Sbjct: 64 FRHDEYAAYKATRPKTPDELIGQFDILKEILKALNINFIEADGFEADDILGTISKKGEQE 123
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G +V+ +KD+ Q++S + +L
Sbjct: 124 GIFSIIVTGDKDALQLVSSNTNVL 147
>gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134]
gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134]
Length = 941
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP+YK +RP P+ + + ++ + +++A+ ++ V GVEADDVIG LA ++ +
Sbjct: 67 TFRDEMYPAYKEHRPSMPEDLARQIEPIHEAVRALGWPIVVVEGVEADDVIGTLARQAAE 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 127 QGVRTVVSTGDKDLAQLVNDQVTLV 151
>gi|407452638|ref|YP_006724363.1| DNA polymerase I - 3'-5' exonuclease and polymerase
domain-containing protein [Riemerella anatipestifer
RA-CH-1]
gi|403313622|gb|AFR36463.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain protein
[Riemerella anatipestifer RA-CH-1]
Length = 935
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
N RH + YK NR TP+ + + Y+ +KAM I ++ V G EADDVIG +A ++
Sbjct: 70 NVRHEDFSDYKANRAETPEAIKIAVPYIHRILKAMHIPILGVEGYEADDVIGTIASKAEK 129
Query: 62 DGFKIQVVSPNKD 74
G+++ +V+P+KD
Sbjct: 130 QGYEVFMVTPDKD 142
>gi|319787968|ref|YP_004147443.1| 5'-3' exonuclease [Pseudoxanthomonas suwonensis 11-1]
gi|317466480|gb|ADV28212.1| 5'-3' exonuclease, N-terminal resolvase-like domain
[Pseudoxanthomonas suwonensis 11-1]
Length = 326
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +YP+YK NR P PD + + + KA A+ + V+ EADD+IG R+
Sbjct: 83 FRHRIYPAYKGNREPAPDELRRQFAHCKALCAALGLAVLAHTEYEADDLIGTALYRARPA 142
Query: 63 GFKIQVVSPNKD-SQIL 78
GF+ +VS +KD SQ+L
Sbjct: 143 GFRGVIVSADKDLSQLL 159
>gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127]
gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127]
Length = 930
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V G+EADDVIG LA+++
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQASRL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ +++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDNNIMLI 152
>gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3]
gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3]
Length = 922
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ LY YK +RPP PD + ++ L I+A+ + +I +PGVEADDVIG +A ++ +
Sbjct: 69 FRNDLYEEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGTIARQASRE 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
+ + + +KD +Q++ ++ L+
Sbjct: 129 NRAVLISTGDKDMAQLVDENITLI 152
>gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
gi|386266417|ref|YP_005829909.1| DNA polymerase I [Haemophilus influenzae R2846]
gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846]
Length = 930
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V G+EADDVIG LA+++
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQASRL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ +++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDNNIMLI 152
>gi|416892197|ref|ZP_11923627.1| DNA polymerase I [Aggregatibacter aphrophilus ATCC 33389]
gi|347814961|gb|EGY31605.1| DNA polymerase I [Aggregatibacter aphrophilus ATCC 33389]
Length = 458
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L ++A+ I ++ V GVEADDVIG LA ++ +
Sbjct: 113 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMVRALGIPLLVVEGVEADDVIGTLARQASQN 172
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 173 GQKVLISTGDKDMAQLVDDNIMLI 196
>gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6]
gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6]
Length = 934
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK RPP PD + ++ + ++ + V+EVPG+EADDVIG LA +
Sbjct: 70 FRDDWYPLYKAQRPPMPDDLRLQIEPIHEVVRLLGWPVLEVPGIEADDVIGTLAQLAEKS 129
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR 90
G ++ + + +KD +Q+++ + L+ R
Sbjct: 130 GHRVVISTGDKDLAQLVTEHVTLINTMSR 158
>gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
Length = 899
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 48/71 (67%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R + P+YK +R P+ +V ++ ++A+++ V+EVPG EADDVIG LA R+ +G
Sbjct: 73 RQKIDPNYKAHREGPPEDLVPQFALIRKVVEALNLPVLEVPGWEADDVIGTLAARAKAEG 132
Query: 64 FKIQVVSPNKD 74
F +QVV+ +KD
Sbjct: 133 FCVQVVTGDKD 143
>gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18]
gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18]
Length = 920
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 58/97 (59%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +P YK R TP+ + + +K ++AM I +++V G EADD+IG +A R D
Sbjct: 65 FRHDAFPEYKAQREETPEDIKLSVPLIKQVLEAMHIPILQVYGFEADDIIGTIATRFGAD 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ ++ + R PR G+E++
Sbjct: 125 GIDTFMLTPDKDYGQLIGPNVFMYR--PRHGGGYEIL 159
>gi|384411715|ref|YP_005621080.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|335932089|gb|AEH62629.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
Length = 921
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FR LYP+YK +RPP P+ +V ++ + +A S+ IE G+EADD+I + +++
Sbjct: 74 SFRQDLYPAYKAHRPPPPEDLVPQFPLIREATRAFSVPSIEQEGLEADDIIACYSRVALE 133
Query: 62 DGFKIQVVSPNKD 74
GF++ V S +KD
Sbjct: 134 RGFQVTVYSSDKD 146
>gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7]
gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7]
Length = 922
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ LY YK +RPP PD + ++ L I+A+ + +I +PGVEADDVIG +A ++ +
Sbjct: 69 FRNDLYEEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGTIARQASRE 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
+ + + +KD +Q++ ++ L+
Sbjct: 129 NRAVLISTGDKDMAQLVDENITLI 152
>gi|389757324|ref|ZP_10191642.1| DNA polymerase I, partial [Rhodanobacter sp. 115]
gi|388430940|gb|EIL88059.1| DNA polymerase I, partial [Rhodanobacter sp. 115]
Length = 315
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ +Y YK NRPP PD + ++ + A + A+ ++ V GVEADDVIG LAV++
Sbjct: 63 FRNDMYDQYKANRPPMPDDLRAQVEPMLAIVGALGFPILRVSGVEADDVIGTLAVQAHAQ 122
Query: 63 GFKIQVVSPNKD 74
G ++++ + +KD
Sbjct: 123 GIEVEISTGDKD 134
>gi|440730656|ref|ZP_20910734.1| DNA polymerase I [Xanthomonas translucens DAR61454]
gi|440378040|gb|ELQ14673.1| DNA polymerase I [Xanthomonas translucens DAR61454]
Length = 922
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRPP PD + ++ + + A+ I ++ GVEADDVIG LA++ D
Sbjct: 63 FRDDLYAQYKANRPPMPDELRAQVEPMCQIVHALGISILREGGVEADDVIGTLALQGAGD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLDVTISTGDKD 134
>gi|433677503|ref|ZP_20509476.1| DNA polymerase I [Xanthomonas translucens pv. translucens DSM
18974]
gi|430817375|emb|CCP39879.1| DNA polymerase I [Xanthomonas translucens pv. translucens DSM
18974]
Length = 922
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRPP PD + ++ + + A+ I ++ GVEADDVIG LA++ D
Sbjct: 63 FRDDLYAQYKANRPPMPDELRAQVEPMCQIVHALGISILREGGVEADDVIGTLALQGAGD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLDVTISTGDKD 134
>gi|428769057|ref|YP_007160847.1| DNA polymerase I [Cyanobacterium aponinum PCC 10605]
gi|428683336|gb|AFZ52803.1| DNA polymerase I [Cyanobacterium aponinum PCC 10605]
Length = 970
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 48/72 (66%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRHT +YK +R P PD ++ + L+ +KA++I+++ G EADDVIG LA ++V
Sbjct: 74 FRHTADSNYKGDRTPAPDDFIEDVNNLQILLKALNIQIVTAVGYEADDVIGTLATQAVKS 133
Query: 63 GFKIQVVSPNKD 74
+++++S ++D
Sbjct: 134 HCQVKILSGDRD 145
>gi|253690587|ref|YP_003019777.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
PC1]
gi|251757165|gb|ACT15241.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
PC1]
Length = 929
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ +YK +RPP P+ + + ++ L +KAM + ++ V GVEADDVIG LAV++
Sbjct: 68 TFRDELFENYKAHRPPMPEDLREQIEPLHNMVKAMGLPLLAVSGVEADDVIGTLAVQAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ S+ L+
Sbjct: 128 AGKPVLISTGDKDMAQLVTPSVTLI 152
>gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
Length = 930
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREAER 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPGITLI 152
>gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20]
gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
gi|1169402|sp|P43741.1|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I
gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20]
gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
Length = 930
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V G+EADDVIG LA+++
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQASSL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDDNIMLI 152
>gi|378976180|ref|YP_005224321.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae HS11286]
gi|421912334|ref|ZP_16342058.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|428152544|ref|ZP_19000203.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|364515591|gb|AEW58719.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae HS11286]
gi|410113702|emb|CCM84683.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|427537409|emb|CCM96341.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
Length = 892
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ VPGVEADDVIG LA +
Sbjct: 30 TFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREAER 89
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 90 AGRPVLISTGDKDMAQLVTPGITLI 114
>gi|386037302|ref|YP_005957215.1| DNA polymerase I [Klebsiella pneumoniae KCTC 2242]
gi|424833131|ref|ZP_18257859.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|425094967|ref|ZP_18498047.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|339764430|gb|AEK00651.1| DNA polymerase I [Klebsiella pneumoniae KCTC 2242]
gi|405609171|gb|EKB82051.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|414710580|emb|CCN32284.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
Length = 930
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREAER 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPGITLI 152
>gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
Length = 927
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREAER 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPGITLI 152
>gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
Length = 948
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R +Y YK NR TP+ + + Y+ +KAM I ++ G EADDVIG LA ++ +G
Sbjct: 70 RVEMYQEYKANRDETPEGIKTAVPYIYEILKAMHIPIMVKKGYEADDVIGTLAKKAEKEG 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLR 86
+K +V+P+KD +Q++S ++ + R
Sbjct: 130 YKTFMVTPDKDFAQLVSENIFMYR 153
>gi|428932828|ref|ZP_19006397.1| DNA polymerase I [Klebsiella pneumoniae JHCK1]
gi|426306738|gb|EKV68835.1| DNA polymerase I [Klebsiella pneumoniae JHCK1]
Length = 930
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREAER 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPGITLI 152
>gi|425083933|ref|ZP_18487030.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|405597853|gb|EKB71101.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
Length = 930
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREAER 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPGITLI 152
>gi|256850824|ref|ZP_05556213.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN]
gi|260661035|ref|ZP_05861949.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN]
gi|297205697|ref|ZP_06923092.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16]
gi|256615886|gb|EEU21074.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN]
gi|260547972|gb|EEX23948.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN]
gi|297148823|gb|EFH29121.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16]
Length = 885
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK R TP +++ + Y+K +K + IK E+ EADD+IG + D
Sbjct: 70 FRTKLYSDYKGGRQKTPSELLEQIPYIKEMLKDLGIKSYELANYEADDIIGTYSKMGEDA 129
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
G+++ VVS +KD L+ L + + G
Sbjct: 130 GYQVAVVSGDKDLTQLASDLTTVYVTKSG 158
>gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII]
gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII]
gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866]
Length = 935
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V G+EADDVIG LA+++
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQASSL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDDNIMLI 152
>gi|419840236|ref|ZP_14363632.1| DNA-directed DNA polymerase [Haemophilus haemolyticus HK386]
gi|386908057|gb|EIJ72756.1| DNA-directed DNA polymerase [Haemophilus haemolyticus HK386]
Length = 935
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA+++
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLALQASRL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDDNIMLI 152
>gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573]
gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573]
Length = 938
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK NRPP PD + ++ L I+AM + ++ + GVEADDVIG LA ++
Sbjct: 68 TFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 AGMPVLISTGDKDMAQLVDENITLI 152
>gi|433654694|ref|YP_007298402.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433292883|gb|AGB18705.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 867
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 53/89 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y +YK R P+ +++ + LK I A +IK IE+ G EADD+IG ++ + ++
Sbjct: 64 FRHKEYSAYKGTRQSMPEELIEQVDILKDVINAFNIKTIEIEGFEADDIIGTVSKIASEN 123
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
G K+ +V+ ++D+ L ++I +G
Sbjct: 124 GLKVLIVTGDRDALQLVSDDVKVKICKKG 152
>gi|365144392|ref|ZP_09348655.1| DNA polymerase I [Klebsiella sp. 4_1_44FAA]
gi|419975303|ref|ZP_14490715.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
gi|419981063|ref|ZP_14496342.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH2]
gi|419986392|ref|ZP_14501525.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH4]
gi|419991989|ref|ZP_14506949.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH5]
gi|419998392|ref|ZP_14513180.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH6]
gi|420004281|ref|ZP_14518920.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH7]
gi|420010026|ref|ZP_14524504.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH8]
gi|420016077|ref|ZP_14530372.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH9]
gi|420021547|ref|ZP_14535726.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH10]
gi|420027070|ref|ZP_14541067.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH11]
gi|420032990|ref|ZP_14546800.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH12]
gi|420038462|ref|ZP_14552108.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH14]
gi|420044576|ref|ZP_14558055.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH16]
gi|420050421|ref|ZP_14563720.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH17]
gi|420055809|ref|ZP_14568972.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH18]
gi|420060642|ref|ZP_14573639.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH19]
gi|420067350|ref|ZP_14580143.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH20]
gi|420073941|ref|ZP_14586560.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH21]
gi|420078532|ref|ZP_14590988.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH22]
gi|420084173|ref|ZP_14596439.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH23]
gi|421917949|ref|ZP_16347489.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|428940113|ref|ZP_19013206.1| DNA polymerase I [Klebsiella pneumoniae VA360]
gi|363648183|gb|EHL87366.1| DNA polymerase I [Klebsiella sp. 4_1_44FAA]
gi|397343546|gb|EJJ36691.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
gi|397344023|gb|EJJ37161.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH2]
gi|397348376|gb|EJJ41477.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH4]
gi|397360567|gb|EJJ53243.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH6]
gi|397361962|gb|EJJ54617.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH5]
gi|397366460|gb|EJJ59077.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH7]
gi|397375400|gb|EJJ67691.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH9]
gi|397379946|gb|EJJ72136.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH8]
gi|397386732|gb|EJJ78801.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH10]
gi|397394187|gb|EJJ85923.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH11]
gi|397396264|gb|EJJ87958.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH12]
gi|397404166|gb|EJJ95686.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH14]
gi|397411095|gb|EJK02359.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH17]
gi|397411690|gb|EJK02940.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH16]
gi|397421229|gb|EJK12254.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH18]
gi|397428163|gb|EJK18909.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH20]
gi|397432887|gb|EJK23542.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH19]
gi|397437148|gb|EJK27719.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH21]
gi|397444658|gb|EJK34925.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH22]
gi|397450498|gb|EJK40602.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH23]
gi|410119651|emb|CCM90114.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|426302813|gb|EKV65002.1| DNA polymerase I [Klebsiella pneumoniae VA360]
Length = 930
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREAER 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPGITLI 152
>gi|357055546|ref|ZP_09116614.1| hypothetical protein HMPREF9467_03586 [Clostridium clostridioforme
2_1_49FAA]
gi|355382665|gb|EHG29762.1| hypothetical protein HMPREF9467_03586 [Clostridium clostridioforme
2_1_49FAA]
Length = 935
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y +YK R P P + + + +K +KAM I ++ + G EADD++G +A R
Sbjct: 63 TFRHEMYDAYKGTRKPMPQELHEQIPVMKDVLKAMGIPIMTLEGFEADDILGTVAKRCQA 122
Query: 62 DGFKIQVVSPNKDSQILSHSLCLLRIAPR 90
G ++ VVS ++D L+ +RI PR
Sbjct: 123 QGIQVSVVSGDRDLLQLADEHIKIRI-PR 150
>gi|336313795|ref|ZP_08568717.1| DNA polymerase I [Rheinheimera sp. A13L]
gi|335881734|gb|EGM79611.1| DNA polymerase I [Rheinheimera sp. A13L]
Length = 925
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR+ +Y YK +RPP PD + + L I+AM + +I + GVEADDVIG LAV++
Sbjct: 68 TFRNEMYSEYKAHRPPMPDDLRSQIAPLHQIIEAMGLPLICISGVEADDVIGTLAVQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ + L+
Sbjct: 128 QGRHVLISTGDKDMAQLVDQHVTLI 152
>gi|385800354|ref|YP_005836758.1| DNA polymerase I [Halanaerobium praevalens DSM 2228]
gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228]
Length = 880
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH YP YK NR P+ +V + L+ +IK + I ++ G EADD++G L+ ++
Sbjct: 72 FRHQEYPEYKGNRKKMPEELVPQINLLQETIKKLEIPMVSKVGYEADDLLGTLSKQAEKK 131
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+K+ +V+ ++D+ Q++S ++ +L
Sbjct: 132 GYKVYIVTGDRDALQLVSENVNIL 155
>gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|424931031|ref|ZP_18349403.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|449059711|ref|ZP_21737397.1| DNA polymerase I [Klebsiella pneumoniae hvKP1]
gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|407805218|gb|EKF76469.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|448874596|gb|EMB09637.1| DNA polymerase I [Klebsiella pneumoniae hvKP1]
Length = 930
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREAER 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPGITLI 152
>gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
Length = 930
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V G+EADDVIG LA+++
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQASSL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDDNIMLI 152
>gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342]
gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22]
gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342]
gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22]
Length = 930
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREAER 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPGITLI 152
>gi|394991801|ref|ZP_10384599.1| DNA polymerase I [Bacillus sp. 916]
gi|393807346|gb|EJD68667.1| DNA polymerase I [Bacillus sp. 916]
Length = 879
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 52/89 (58%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH+ + YK R TP + + + +++ + A +I E+P EADD+IG LAV + +
Sbjct: 67 FRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYNISRYELPEYEADDIIGTLAVSAEKE 126
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF+++VVS +KD L+ + I +G
Sbjct: 127 GFEVKVVSGDKDLTQLATGKTTVAITRKG 155
>gi|372210229|ref|ZP_09498031.1| DNA polymerase I [Flavobacteriaceae bacterium S85]
Length = 935
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R + +YK NR TP+ + + Y++ ++AM+I +IE G EADD+IG LA ++ +G
Sbjct: 70 RTESFEAYKANRQETPEAIKIAVPYIQQILRAMNIPIIEKEGFEADDLIGTLAKQAEKEG 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
++ +V+P+KD +Q++S ++ + R A G
Sbjct: 130 CQVYMVTPDKDYAQLVSENIFMYRPARMG 158
>gi|119713448|gb|ABL97509.1| DNA polymerase A [uncultured marine bacterium HOT0_02H05]
Length = 970
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 49/72 (68%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +YK +R TP+ + +Q L+ ++A++I +I PG EADD++G +A R ++
Sbjct: 75 FRHEADVNYKADRKETPEDFIPDIQNLQRLLEALNITIITAPGYEADDILGTVANRGTEN 134
Query: 63 GFKIQVVSPNKD 74
G+++++V+ ++D
Sbjct: 135 GYRVKIVTGDRD 146
>gi|432516269|ref|ZP_19753482.1| DNA polymerase I [Escherichia coli KTE224]
gi|432701395|ref|ZP_19936537.1| DNA polymerase I [Escherichia coli KTE169]
gi|433146518|ref|ZP_20331645.1| DNA polymerase I [Escherichia coli KTE168]
gi|431037752|gb|ELD48727.1| DNA polymerase I [Escherichia coli KTE224]
gi|431239483|gb|ELF33960.1| DNA polymerase I [Escherichia coli KTE169]
gi|431656828|gb|ELJ23802.1| DNA polymerase I [Escherichia coli KTE168]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 TGRPVLISTGDKDMAQLVTPNITLI 152
>gi|425079111|ref|ZP_18482213.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|425084758|ref|ZP_18487851.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|405589110|gb|EKB62698.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|405608761|gb|EKB81700.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
Length = 930
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREAER 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPGITLI 152
>gi|342903660|ref|ZP_08725468.1| DNA polymerase I [Haemophilus haemolyticus M21621]
gi|341954911|gb|EGT81380.1| DNA polymerase I [Haemophilus haemolyticus M21621]
Length = 935
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA+++
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLALQASRL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDDNIMLI 152
>gi|417841860|ref|ZP_12487958.1| DNA polymerase I [Haemophilus haemolyticus M19501]
gi|341948234|gb|EGT74865.1| DNA polymerase I [Haemophilus haemolyticus M19501]
Length = 935
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA+++
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLALQASRL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDDNIMLI 152
>gi|422757343|ref|ZP_16811163.1| DNA polymerase I [Escherichia coli H263]
gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 TGRPVLISTGDKDMAQLVTPNITLI 152
>gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603]
gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603]
Length = 938
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK NRPP PD + ++ L I+AM + ++ + GVEADDVIG LA ++
Sbjct: 68 TFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 AGMPVLISTGDKDMAQLVDENITLI 152
>gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605]
gi|417664507|ref|ZP_12314086.1| DNA polymerase 1 [Escherichia coli AA86]
gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86]
gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 TGRPVLISTGDKDMAQLVTPNITLI 152
>gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
Length = 933
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ PGVEADDVIG LA +
Sbjct: 68 TFRDELFAEYKSHRPPMPDDLRAQIEPLHRMVKAMGLPLLVTPGVEADDVIGTLAQEAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGHAVLISTGDKDMAQLVTPNITLI 152
>gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
Length = 945
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ +Y YK RPP PD + ++ L I+A+ + ++ +PGVEADDVIG +A ++ +
Sbjct: 95 FRNDMYEEYKAQRPPMPDDLRTQIEPLHNIIRALGLPLVCIPGVEADDVIGTIATQASKE 154
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 155 GRAVLISTGDKDMAQLVDDNVTLI 178
>gi|67923259|ref|ZP_00516744.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
gi|67854885|gb|EAM50159.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
Length = 970
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 49/72 (68%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +YK +R TP+ + +Q L+ ++A++I +I PG EADD++G +A R ++
Sbjct: 75 FRHEADVNYKADRKETPEDFIPDIQNLQRLLEALNITIITAPGYEADDILGTVANRGTEN 134
Query: 63 GFKIQVVSPNKD 74
G+++++V+ ++D
Sbjct: 135 GYRVKIVTGDRD 146
>gi|402783202|ref|YP_006638748.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|402544037|gb|AFQ68186.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae 1084]
Length = 886
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ VPGVEADDVIG LA +
Sbjct: 24 TFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREAER 83
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 84 AGRPVLISTGDKDMAQLVTPGITLI 108
>gi|373468008|ref|ZP_09559294.1| DNA-directed DNA polymerase [Haemophilus sp. oral taxon 851 str.
F0397]
gi|371757046|gb|EHO45845.1| DNA-directed DNA polymerase [Haemophilus sp. oral taxon 851 str.
F0397]
Length = 935
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA+++
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLALQASRL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDDNIMLI 152
>gi|424810745|ref|ZP_18236086.1| DNA polymerase I [Vibrio mimicus SX-4]
gi|342322117|gb|EGU17911.1| DNA polymerase I [Vibrio mimicus SX-4]
Length = 943
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK NRPP PD + ++ L I+AM + ++ + GVEADDVIG LA ++
Sbjct: 73 TFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQ 132
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 133 AGMPVLISTGDKDMAQLVDENITLI 157
>gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|383485028|ref|YP_005393940.1| DNA polymerase i [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|386322304|ref|YP_006018466.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
[Riemerella anatipestifer RA-GD]
gi|416111293|ref|ZP_11592550.1| DNA polymerase I [Riemerella anatipestifer RA-YM]
gi|442315114|ref|YP_007356417.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
[Riemerella anatipestifer RA-CH-2]
gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM]
gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
[Riemerella anatipestifer RA-GD]
gi|380459713|gb|AFD55397.1| DNA polymerase i [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|441484037|gb|AGC40723.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
[Riemerella anatipestifer RA-CH-2]
Length = 935
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
N RH + YK NR TP+ + + Y+ +KAM I ++ V G EADDVIG +A ++
Sbjct: 70 NVRHEDFSDYKANRAETPEAIKIAVPYIHRILKAMHIPILGVEGYEADDVIGTIAGKAEK 129
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
G+++ +V+P+KD +Q+++ + + + +G
Sbjct: 130 QGYEVFMVTPDKDFAQLVTEHIKIYKPGLKG 160
>gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101]
gi|432384792|ref|ZP_19627699.1| DNA polymerase I [Escherichia coli KTE16]
gi|432907725|ref|ZP_20116085.1| DNA polymerase I [Escherichia coli KTE194]
gi|432969455|ref|ZP_20158362.1| DNA polymerase I [Escherichia coli KTE207]
gi|433040897|ref|ZP_20228480.1| DNA polymerase I [Escherichia coli KTE113]
gi|433084808|ref|ZP_20271250.1| DNA polymerase I [Escherichia coli KTE133]
gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101]
gi|430911744|gb|ELC33013.1| DNA polymerase I [Escherichia coli KTE16]
gi|431425854|gb|ELH07900.1| DNA polymerase I [Escherichia coli KTE194]
gi|431489979|gb|ELH69602.1| DNA polymerase I [Escherichia coli KTE207]
gi|431547607|gb|ELI21903.1| DNA polymerase I [Escherichia coli KTE113]
gi|431597104|gb|ELI67017.1| DNA polymerase I [Escherichia coli KTE133]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 TGRPVLISTGDKDMAQLVTPNITLI 152
>gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55]
gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55]
Length = 930
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREAER 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPGITLI 152
>gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89]
gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1]
gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88]
gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
gi|386601905|ref|YP_006103411.1| DNA polymerase I [Escherichia coli IHE3034]
gi|386606456|ref|YP_006112756.1| DNA polymerase I [Escherichia coli UM146]
gi|419944324|ref|ZP_14460828.1| DNA polymerase I [Escherichia coli HM605]
gi|422356620|ref|ZP_16437300.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3]
gi|422751912|ref|ZP_16805818.1| DNA polymerase I [Escherichia coli H252]
gi|422841916|ref|ZP_16889884.1| DNA polymerase I [Escherichia coli H397]
gi|432360334|ref|ZP_19603544.1| DNA polymerase I [Escherichia coli KTE4]
gi|432365134|ref|ZP_19608286.1| DNA polymerase I [Escherichia coli KTE5]
gi|432576125|ref|ZP_19812591.1| DNA polymerase I [Escherichia coli KTE55]
gi|432590334|ref|ZP_19826683.1| DNA polymerase I [Escherichia coli KTE58]
gi|432598705|ref|ZP_19834979.1| DNA polymerase I [Escherichia coli KTE62]
gi|432756837|ref|ZP_19991379.1| DNA polymerase I [Escherichia coli KTE22]
gi|432781042|ref|ZP_20015256.1| DNA polymerase I [Escherichia coli KTE59]
gi|432789906|ref|ZP_20024031.1| DNA polymerase I [Escherichia coli KTE65]
gi|432818670|ref|ZP_20052390.1| DNA polymerase I [Escherichia coli KTE118]
gi|432824802|ref|ZP_20058464.1| DNA polymerase I [Escherichia coli KTE123]
gi|433002782|ref|ZP_20191289.1| DNA polymerase I [Escherichia coli KTE227]
gi|433010082|ref|ZP_20198491.1| DNA polymerase I [Escherichia coli KTE229]
gi|433156073|ref|ZP_20340994.1| DNA polymerase I [Escherichia coli KTE176]
gi|433165900|ref|ZP_20350621.1| DNA polymerase I [Escherichia coli KTE179]
gi|433170895|ref|ZP_20355507.1| DNA polymerase I [Escherichia coli KTE180]
gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89]
gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1]
gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Escherichia coli S88]
gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034]
gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146]
gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3]
gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252]
gi|371603613|gb|EHN92264.1| DNA polymerase I [Escherichia coli H397]
gi|388419205|gb|EIL78953.1| DNA polymerase I [Escherichia coli HM605]
gi|430872616|gb|ELB96214.1| DNA polymerase I [Escherichia coli KTE4]
gi|430882792|gb|ELC05862.1| DNA polymerase I [Escherichia coli KTE5]
gi|431104027|gb|ELE08634.1| DNA polymerase I [Escherichia coli KTE55]
gi|431117251|gb|ELE20513.1| DNA polymerase I [Escherichia coli KTE58]
gi|431130218|gb|ELE32327.1| DNA polymerase I [Escherichia coli KTE62]
gi|431299081|gb|ELF88657.1| DNA polymerase I [Escherichia coli KTE22]
gi|431323663|gb|ELG11135.1| DNA polymerase I [Escherichia coli KTE59]
gi|431334501|gb|ELG21659.1| DNA polymerase I [Escherichia coli KTE65]
gi|431373038|gb|ELG58698.1| DNA polymerase I [Escherichia coli KTE118]
gi|431377160|gb|ELG62293.1| DNA polymerase I [Escherichia coli KTE123]
gi|431520619|gb|ELH97940.1| DNA polymerase I [Escherichia coli KTE229]
gi|431521362|gb|ELH98608.1| DNA polymerase I [Escherichia coli KTE227]
gi|431669352|gb|ELJ35776.1| DNA polymerase I [Escherichia coli KTE176]
gi|431682917|gb|ELJ48562.1| DNA polymerase I [Escherichia coli KTE179]
gi|431683317|gb|ELJ48954.1| DNA polymerase I [Escherichia coli KTE180]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 TGRPVLISTGDKDMAQLVTPNITLI 152
>gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
Length = 930
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREAER 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPGITLI 152
>gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223]
gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223]
Length = 890
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK NRPP PD + ++ L I+AM + ++ + GVEADDVIG LA ++
Sbjct: 24 TFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQ 83
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 84 AGMPVLISTGDKDMAQLVDENITLI 108
>gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451]
gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451]
Length = 938
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK NRPP PD + ++ L I+AM + ++ + GVEADDVIG LA ++
Sbjct: 68 TFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 AGMPVLISTGDKDMAQLVDENITLI 152
>gi|432747854|ref|ZP_19982514.1| DNA polymerase I [Escherichia coli KTE43]
gi|431289005|gb|ELF79752.1| DNA polymerase I [Escherichia coli KTE43]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 TGRPVLISTGDKDMAQLVTPNITLI 152
>gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36]
gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36]
Length = 951
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A I ++EV G EADDVIG LA +
Sbjct: 69 FRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEADDVIGTLATEAGRQ 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++S ++ + R P+ GFE++
Sbjct: 129 GITTYMMTPDKDYGQLVSDNVFMYR--PKHTGGFEIM 163
>gi|308174603|ref|YP_003921308.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
gi|384160438|ref|YP_005542511.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
gi|384165377|ref|YP_005546756.1| DNA polymerase I [Bacillus amyloliquefaciens LL3]
gi|384169519|ref|YP_005550897.1| DNA polymerase I [Bacillus amyloliquefaciens XH7]
gi|307607467|emb|CBI43838.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
gi|328554526|gb|AEB25018.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
gi|328912932|gb|AEB64528.1| DNA polymerase I [Bacillus amyloliquefaciens LL3]
gi|341828798|gb|AEK90049.1| DNA polymerase I [Bacillus amyloliquefaciens XH7]
Length = 879
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH+ + YK R TP + + + +++ + A +I E+P EADD+IG LAV + D
Sbjct: 67 FRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYNISRYELPEYEADDIIGTLAVSAEKD 126
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF+++V S +KD L+ + I +G
Sbjct: 127 GFEVKVFSGDKDLTQLATGKTTVAITRKG 155
>gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8]
gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8]
Length = 905
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP YK++RPP P+ + ++ + ++++A+ V+ + GVEADDVIG LA R+ +
Sbjct: 65 FRDDLYPEYKSHRPPMPEDLAAQIEPIHSAVRALGWPVLAIEGVEADDVIGTLAKRAAEH 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
V + +KD +Q+++ + L+
Sbjct: 125 DVYTIVSTGDKDLAQLVNSHVTLV 148
>gi|445053310|ref|ZP_21368314.1| DNA polymerase I [Escherichia coli 95.0083]
gi|444659467|gb|ELW31882.1| DNA polymerase I [Escherichia coli 95.0083]
Length = 516
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 69 FRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 129 GRPVLISTGDKDMAQLVTPNITLI 152
>gi|432383777|ref|ZP_19626700.1| DNA polymerase I [Escherichia coli KTE15]
gi|432613883|ref|ZP_19850038.1| DNA polymerase I [Escherichia coli KTE72]
gi|432648551|ref|ZP_19884334.1| DNA polymerase I [Escherichia coli KTE86]
gi|432658116|ref|ZP_19893811.1| DNA polymerase I [Escherichia coli KTE93]
gi|432940725|ref|ZP_20138599.1| DNA polymerase I [Escherichia coli KTE183]
gi|432987726|ref|ZP_20176435.1| DNA polymerase I [Escherichia coli KTE215]
gi|433103479|ref|ZP_20289545.1| DNA polymerase I [Escherichia coli KTE145]
gi|433190687|ref|ZP_20374770.1| DNA polymerase I [Escherichia coli KTE88]
gi|430902779|gb|ELC24583.1| DNA polymerase I [Escherichia coli KTE15]
gi|431145805|gb|ELE47410.1| DNA polymerase I [Escherichia coli KTE72]
gi|431177261|gb|ELE77193.1| DNA polymerase I [Escherichia coli KTE86]
gi|431187165|gb|ELE86678.1| DNA polymerase I [Escherichia coli KTE93]
gi|431459417|gb|ELH39711.1| DNA polymerase I [Escherichia coli KTE183]
gi|431493006|gb|ELH72601.1| DNA polymerase I [Escherichia coli KTE215]
gi|431615557|gb|ELI84685.1| DNA polymerase I [Escherichia coli KTE145]
gi|431701147|gb|ELJ66067.1| DNA polymerase I [Escherichia coli KTE88]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 TGRPVLISTGDKDMAQLVTPNITLI 152
>gi|416396687|ref|ZP_11686470.1| DNA polymerase I [Crocosphaera watsonii WH 0003]
gi|357262941|gb|EHJ12014.1| DNA polymerase I [Crocosphaera watsonii WH 0003]
Length = 970
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 49/72 (68%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +YK +R TP+ + +Q L+ ++A++I +I PG EADD++G +A R ++
Sbjct: 75 FRHEADVNYKADRKETPEDFIPDIQNLQRLLEALNITIITAPGYEADDILGTVANRGTEN 134
Query: 63 GFKIQVVSPNKD 74
G+++++V+ ++D
Sbjct: 135 GYRVKIVTGDRD 146
>gi|417692309|ref|ZP_12341507.1| DNA polymerase I [Shigella boydii 5216-82]
gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGCPVLISTGDKDMAQLVTPNITLI 152
>gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655]
gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA]
gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655]
gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA]
Length = 935
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V G+EADDVIG LA+++
Sbjct: 69 FRDEMFEHYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQASRL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ +++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDNNIMLI 152
>gi|449145679|ref|ZP_21776481.1| DNA polymerase I [Vibrio mimicus CAIM 602]
gi|449078712|gb|EMB49644.1| DNA polymerase I [Vibrio mimicus CAIM 602]
Length = 938
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK NRPP PD + ++ L I+AM + ++ + GVEADDVIG LA ++
Sbjct: 68 TFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 AGMPVLISTGDKDMAQLVDENITLI 152
>gi|417843781|ref|ZP_12489847.1| DNA polymerase I [Haemophilus haemolyticus M21127]
gi|341948529|gb|EGT75155.1| DNA polymerase I [Haemophilus haemolyticus M21127]
Length = 935
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V GVEADDVIG LA+++
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLALQASRL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDDNIMLI 152
>gi|423082473|ref|ZP_17071065.1| DNA-directed DNA polymerase [Clostridium difficile 002-P50-2011]
gi|423087885|ref|ZP_17076271.1| DNA-directed DNA polymerase [Clostridium difficile 050-P50-2011]
gi|357544199|gb|EHJ26205.1| DNA-directed DNA polymerase [Clostridium difficile 050-P50-2011]
gi|357548799|gb|EHJ30659.1| DNA-directed DNA polymerase [Clostridium difficile 002-P50-2011]
Length = 882
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R PD + + LQ LK + I +E+ G EADD+IG ++ ++ ++
Sbjct: 65 FRHLEYKEYKAGRKGMPDELAEQLQPLKDLLDKFKINRLEIDGYEADDIIGTVSKKAENN 124
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
G+K+ +V+ +KD+ L+ I +G
Sbjct: 125 GYKVYIVTGDKDAIQLASDNTTTLITKKG 153
>gi|433630723|ref|YP_007264351.1| Putative DNA polymerase I PolA [Mycobacterium canettii CIPT
140070010]
gi|432162316|emb|CCK59692.1| Putative DNA polymerase I PolA [Mycobacterium canettii CIPT
140070010]
Length = 904
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA + ++
Sbjct: 79 FRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATEAENE 138
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++D+ Q++S + +L
Sbjct: 139 GYRVLVVTGDRDALQLVSDDVTVL 162
>gi|433641767|ref|YP_007287526.1| Putative DNA polymerase I PolA [Mycobacterium canettii CIPT
140070008]
gi|432158315|emb|CCK55606.1| Putative DNA polymerase I PolA [Mycobacterium canettii CIPT
140070008]
Length = 904
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA + ++
Sbjct: 79 FRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATEAENE 138
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++D+ Q++S + +L
Sbjct: 139 GYRVLVVTGDRDALQLVSDDVTVL 162
>gi|332283708|ref|YP_004415619.1| DNA polymerase I [Pusillimonas sp. T7-7]
gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7]
Length = 860
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK NRP P+ + + + ++ A+ V+ VPGVEADD+IG LA R+ +
Sbjct: 20 FRDDIYPLYKGNRPSMPEELAAQTEPIHRAVAALGWPVLAVPGVEADDIIGTLARRAAQE 79
Query: 63 GFKIQVVSPNKD 74
G V + +KD
Sbjct: 80 GVHTVVSTGDKD 91
>gi|405375773|ref|ZP_11029795.1| DNA polymerase I [Chondromyces apiculatus DSM 436]
gi|397085938|gb|EJJ17096.1| DNA polymerase I [Myxococcus sp. (contaminant ex DSM 436)]
Length = 909
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 48/71 (67%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R + P+YK NR P+ ++ ++ ++A+++ V+EV G EADDVIG LAV++ +G
Sbjct: 74 RQKIDPTYKANREGPPEDLIPQFALIRRVVEAINVPVLEVAGWEADDVIGTLAVKAKQEG 133
Query: 64 FKIQVVSPNKD 74
F +QVV+ +KD
Sbjct: 134 FCVQVVTGDKD 144
>gi|417305802|ref|ZP_12092746.1| DNA polymerase I [Rhodopirellula baltica WH47]
gi|327537894|gb|EGF24594.1| DNA polymerase I [Rhodopirellula baltica WH47]
Length = 975
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FR+ LYP YK NR PD + Q + ++ +I AM I +IE G EADD++ +A +
Sbjct: 136 VTFRNELYPEYKANRDSMPDELRQQIPLIRQAIDAMGIGIIEQSGFEADDLLATVAAKVE 195
Query: 61 DDGFKIQVVSPNKDSQIL 78
+ G + VV+ +KD + L
Sbjct: 196 EAGGRCLVVTSDKDCRQL 213
>gi|285017276|ref|YP_003374987.1| exonuclease [Xanthomonas albilineans GPE PC73]
gi|283472494|emb|CBA14999.1| putative exonuclease protein [Xanthomonas albilineans GPE PC73]
Length = 307
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH LYP+YK NR P PD + + + +A A+ + V+ EADD+IG R+ D
Sbjct: 73 FRHRLYPAYKANRAPAPDALRRQFAHCQALCAALGLCVLADHHYEADDLIGSALHRARGD 132
Query: 63 GFKIQVVSPNKD-SQIL 78
GF +VS +KD SQ+L
Sbjct: 133 GFHGVIVSADKDLSQLL 149
>gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586]
gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586]
Length = 938
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK NRPP PD + ++ L I+AM + ++ + GVEADDVIG LA ++
Sbjct: 68 TFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 128 AGMPVLISTGDKDMAQLVDENITLI 152
>gi|395005950|ref|ZP_10389805.1| DNA polymerase I [Acidovorax sp. CF316]
gi|394316070|gb|EJE52815.1| DNA polymerase I [Acidovorax sp. CF316]
Length = 941
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK R P PD + + + ++ + V+ +PGVEADDVIG LAV +
Sbjct: 71 FRDEIYPEYKAQRAPMPDDLRAQIDPIHEVVRMLGWTVLAIPGVEADDVIGTLAVTAASQ 130
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + V S +KD SQ++ + ++
Sbjct: 131 GVDVVVSSGDKDLSQLVDEHITII 154
>gi|347542053|ref|YP_004856689.1| DNA polymerase I [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346985088|dbj|BAK80763.1| DNA polymerase I [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 860
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 55/89 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y +YK R P+ + + ++ LK ++AM+I + E+ G EADD+IG L+ ++
Sbjct: 64 FRHLEYENYKAGRKSMPNELFEQIEPLKEILRAMNINIFELDGFEADDLIGTLSRIYEEN 123
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF+ +V+ +KD+ LS S+ + I +G
Sbjct: 124 GFEPIIVTGDKDALQLSSSITKVIITKKG 152
>gi|340626634|ref|YP_004745086.1| putative DNA polymerase I POLA [Mycobacterium canettii CIPT
140010059]
gi|340004824|emb|CCC43969.1| putative DNA polymerase I POLA [Mycobacterium canettii CIPT
140010059]
Length = 904
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA + ++
Sbjct: 79 FRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATEAENE 138
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++D+ Q++S + +L
Sbjct: 139 GYRVLVVTGDRDALQLVSDDVTVL 162
>gi|384227286|ref|YP_005619036.1| DNA polymerase I [Buchnera aphidicola str. LL01 (Acyrthosiphon
pisum)]
gi|311086162|gb|ADP66244.1| DNA polymerase I [Buchnera aphidicola str. LL01 (Acyrthosiphon
pisum)]
Length = 312
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ L+ YK NR PD +V +Q L +K + IK + +PG+EADDVIG L+ +
Sbjct: 70 FRNKLFKEYKKNRSSMPDLLVMQIQPLFEILKKIGIKTLTIPGIEADDVIGSLSYQLEKQ 129
Query: 63 GFKIQVVSPNKD 74
G KI ++S +KD
Sbjct: 130 GEKILILSHDKD 141
>gi|408421334|ref|YP_006762748.1| DNA polymerase I PolA [Desulfobacula toluolica Tol2]
gi|405108547|emb|CCK82044.1| PolA: DNA polymerase I [Desulfobacula toluolica Tol2]
Length = 911
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +Y YK NRPP P+ + + +K I+A +I + E G EADD++G A + +
Sbjct: 73 FRHQMYDQYKANRPPMPEDLAVQIPDIKRVIEAFNIPIEEKQGFEADDLVGTYAKLAREK 132
Query: 63 GFKIQVVSPNKDSQILSHSLCLL 85
GF++ +V+ +KD L C L
Sbjct: 133 GFEVVMVTGDKDFMQLVSDHCTL 155
>gi|417228878|ref|ZP_12030636.1| DNA-directed DNA polymerase [Escherichia coli 5.0959]
gi|386208213|gb|EII12718.1| DNA-directed DNA polymerase [Escherichia coli 5.0959]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|381403373|ref|ZP_09928057.1| DNA polymerase I [Pantoea sp. Sc1]
gi|380736572|gb|EIB97635.1| DNA polymerase I [Pantoea sp. Sc1]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L ++AM + ++ V GVEADDVIG LA+ +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHEMVRAMGLPLLAVSGVEADDVIGTLALEAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++S + L+
Sbjct: 128 KGRSVLISTGDKDMAQLVSPGITLI 152
>gi|378697057|ref|YP_005179015.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
exonuclease [Haemophilus influenzae 10810]
gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
exonuclease [Haemophilus influenzae 10810]
Length = 935
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V G+EADDVIG LA+++
Sbjct: 69 FRDEMFEHYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQASRL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ +++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDNNIMLI 152
>gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-2068]
Length = 870
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 VGRPVLISTGDKDMAQLVTQNITLI 152
>gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. CT18]
gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. E02-1180]
gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-3139]
gi|378961778|ref|YP_005219264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. P-stx-12]
gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|374355650|gb|AEZ47411.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. P-stx-12]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 VGRPVLISTGDKDMAQLVTQNITLI 152
>gi|346726843|ref|YP_004853512.1| DNA polymerase I [Xanthomonas axonopodis pv. citrumelo F1]
gi|346651590|gb|AEO44214.1| DNA polymerase I [Xanthomonas axonopodis pv. citrumelo F1]
Length = 933
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRP PD + +Q + + A+ I ++ + GVEADDVIG LA++ D
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLSVTISTGDKD 134
>gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
Length = 953
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A I ++EV G EADDVIG LA +
Sbjct: 69 FRHEAYEQYKAQREETPEAIRLSVPVIKDIIRAYRIPILEVSGYEADDVIGTLATEAGKQ 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++S ++ + R P+ GFE++
Sbjct: 129 GITTYMMTPDKDYGQLVSDNVFMYR--PKHTGGFEVM 163
>gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16]
gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16]
Length = 938
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP+YK +RP P+ + + ++ + +++AM ++ V GVEADDVIG L+ ++ +
Sbjct: 67 TFRDDMYPAYKEHRPSMPEDLARQIEPIHEAVRAMGWPIVVVDGVEADDVIGTLSRQATE 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 127 QGVRTVVSTGDKDLAQLVNDQVTLV 151
>gi|374375426|ref|ZP_09633084.1| DNA polymerase I [Niabella soli DSM 19437]
gi|373232266|gb|EHP52061.1| DNA polymerase I [Niabella soli DSM 19437]
Length = 947
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
RH Y YK NR TP+ ++ + +K IK ++ VIE PG EADD+IG L+ ++ +G
Sbjct: 68 RHMDYADYKANRQETPEDILIAVPDIKRIIKGFNVPVIEAPGFEADDIIGTLSKKAAAEG 127
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+++ +V+ +KD Q++S + + + +G
Sbjct: 128 YEVFMVTSDKDYGQLVSDKIKIYKPGYQG 156
>gi|338730077|ref|YP_004659469.1| DNA polymerase I [Thermotoga thermarum DSM 5069]
gi|335364428|gb|AEH50373.1| DNA polymerase I [Thermotoga thermarum DSM 5069]
Length = 893
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+RH + +YK R P PD M+Q + Y++ +++A+ +KV+ G EADDVI LA + D
Sbjct: 66 TYRHEILATYKAQRKPAPDAMIQQIPYIQRAVEALGVKVLAYEGCEADDVIATLAKKGRD 125
Query: 62 DGFKIQVVSPNKD 74
++ +VS +KD
Sbjct: 126 IFDEVIIVSGDKD 138
>gi|432566241|ref|ZP_19802795.1| DNA polymerase I [Escherichia coli KTE51]
gi|431089336|gb|ELD95155.1| DNA polymerase I [Escherichia coli KTE51]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|417844401|ref|ZP_12490445.1| DNA polymerase I [Haemophilus haemolyticus M21639]
gi|341956854|gb|EGT83270.1| DNA polymerase I [Haemophilus haemolyticus M21639]
Length = 935
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V G+EADDVIG LA+++
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQASRL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDDNIMLI 152
>gi|417116344|ref|ZP_11967205.1| DNA-directed DNA polymerase [Escherichia coli 1.2741]
gi|422803142|ref|ZP_16851632.1| DNA polymerase I [Escherichia coli M863]
gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863]
gi|386138888|gb|EIG80043.1| DNA-directed DNA polymerase [Escherichia coli 1.2741]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a]
gi|432443411|ref|ZP_19685741.1| DNA polymerase I [Escherichia coli KTE189]
gi|432448554|ref|ZP_19690848.1| DNA polymerase I [Escherichia coli KTE191]
gi|433016201|ref|ZP_20204523.1| DNA polymerase I [Escherichia coli KTE104]
gi|433025790|ref|ZP_20213753.1| DNA polymerase I [Escherichia coli KTE106]
gi|433326840|ref|ZP_20403528.1| DNA polymerase I [Escherichia coli J96]
gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Escherichia coli ED1a]
gi|430961855|gb|ELC79854.1| DNA polymerase I [Escherichia coli KTE189]
gi|430970239|gb|ELC87311.1| DNA polymerase I [Escherichia coli KTE191]
gi|431525713|gb|ELI02494.1| DNA polymerase I [Escherichia coli KTE104]
gi|431529957|gb|ELI06647.1| DNA polymerase I [Escherichia coli KTE106]
gi|432345234|gb|ELL39752.1| DNA polymerase I [Escherichia coli J96]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|339326741|ref|YP_004686434.1| DNA polymerase I [Cupriavidus necator N-1]
gi|338166898|gb|AEI77953.1| DNA polymerase I [Cupriavidus necator N-1]
Length = 938
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP+YK +RP P+ + + ++ + +++AM ++ V GVEADDVIG L+ ++ +
Sbjct: 67 TFRDDMYPAYKEHRPSMPEDLARQIEPIHEAVRAMGWPIVVVDGVEADDVIGTLSRQATE 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 127 QGVRTVVSTGDKDLAQLVNDQVTLV 151
>gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206]
gi|422367992|ref|ZP_16448412.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3]
gi|432901529|ref|ZP_20111548.1| DNA polymerase I [Escherichia coli KTE192]
gi|433030822|ref|ZP_20218664.1| DNA polymerase I [Escherichia coli KTE109]
gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3]
gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206]
gi|431421282|gb|ELH03495.1| DNA polymerase I [Escherichia coli KTE192]
gi|431539828|gb|ELI15466.1| DNA polymerase I [Escherichia coli KTE109]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536]
gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11]
gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
gi|419911928|ref|ZP_14430389.1| DNA polymerase I [Escherichia coli KD1]
gi|422376112|ref|ZP_16456365.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1]
gi|422381926|ref|ZP_16462089.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2]
gi|432395267|ref|ZP_19638064.1| DNA polymerase I [Escherichia coli KTE25]
gi|432408949|ref|ZP_19651649.1| DNA polymerase I [Escherichia coli KTE28]
gi|432468218|ref|ZP_19710293.1| DNA polymerase I [Escherichia coli KTE205]
gi|432473232|ref|ZP_19715266.1| DNA polymerase I [Escherichia coli KTE206]
gi|432556112|ref|ZP_19792825.1| DNA polymerase I [Escherichia coli KTE47]
gi|432585407|ref|ZP_19821796.1| DNA polymerase I [Escherichia coli KTE57]
gi|432715737|ref|ZP_19950760.1| DNA polymerase I [Escherichia coli KTE8]
gi|432725345|ref|ZP_19960257.1| DNA polymerase I [Escherichia coli KTE17]
gi|432729953|ref|ZP_19964824.1| DNA polymerase I [Escherichia coli KTE18]
gi|432734632|ref|ZP_19969452.1| DNA polymerase I [Escherichia coli KTE45]
gi|432743642|ref|ZP_19978354.1| DNA polymerase I [Escherichia coli KTE23]
gi|432761717|ref|ZP_19996203.1| DNA polymerase I [Escherichia coli KTE46]
gi|432988374|ref|ZP_20177051.1| DNA polymerase I [Escherichia coli KTE217]
gi|433075166|ref|ZP_20261797.1| DNA polymerase I [Escherichia coli KTE129]
gi|433080091|ref|ZP_20266604.1| DNA polymerase I [Escherichia coli KTE131]
gi|433113155|ref|ZP_20299000.1| DNA polymerase I [Escherichia coli KTE150]
gi|433122497|ref|ZP_20308149.1| DNA polymerase I [Escherichia coli KTE157]
gi|433185623|ref|ZP_20369853.1| DNA polymerase I [Escherichia coli KTE85]
gi|433200644|ref|ZP_20384523.1| DNA polymerase I [Escherichia coli KTE94]
gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536]
gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11]
gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2]
gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1]
gi|388392439|gb|EIL53857.1| DNA polymerase I [Escherichia coli KD1]
gi|430920118|gb|ELC41028.1| DNA polymerase I [Escherichia coli KTE25]
gi|430925757|gb|ELC46359.1| DNA polymerase I [Escherichia coli KTE28]
gi|430990375|gb|ELD06810.1| DNA polymerase I [Escherichia coli KTE205]
gi|430994985|gb|ELD11293.1| DNA polymerase I [Escherichia coli KTE206]
gi|431080073|gb|ELD86879.1| DNA polymerase I [Escherichia coli KTE47]
gi|431114039|gb|ELE17593.1| DNA polymerase I [Escherichia coli KTE57]
gi|431251139|gb|ELF45157.1| DNA polymerase I [Escherichia coli KTE8]
gi|431261652|gb|ELF53677.1| DNA polymerase I [Escherichia coli KTE17]
gi|431270346|gb|ELF61512.1| DNA polymerase I [Escherichia coli KTE45]
gi|431270396|gb|ELF61561.1| DNA polymerase I [Escherichia coli KTE18]
gi|431280671|gb|ELF71586.1| DNA polymerase I [Escherichia coli KTE23]
gi|431304983|gb|ELF93506.1| DNA polymerase I [Escherichia coli KTE46]
gi|431501567|gb|ELH80546.1| DNA polymerase I [Escherichia coli KTE217]
gi|431582029|gb|ELI54465.1| DNA polymerase I [Escherichia coli KTE129]
gi|431592627|gb|ELI63197.1| DNA polymerase I [Escherichia coli KTE131]
gi|431624098|gb|ELI92720.1| DNA polymerase I [Escherichia coli KTE150]
gi|431638293|gb|ELJ06331.1| DNA polymerase I [Escherichia coli KTE157]
gi|431701092|gb|ELJ66013.1| DNA polymerase I [Escherichia coli KTE85]
gi|431716480|gb|ELJ80592.1| DNA polymerase I [Escherichia coli KTE94]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|1097211|prf||2113329A DNA polymerase
Length = 834
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y +YK R PTP+ + L +K + + +EVPG EADDV+ LA ++
Sbjct: 73 SFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVLATLAKKAEK 132
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+G+++++++ ++D Q++S + +L P+G
Sbjct: 133 EGYEVRILTADRDLYQLVSDRVAVLH--PKG 161
>gi|67459631|ref|YP_247255.1| DNA polymerase I [Rickettsia felis URRWXCal2]
gi|14916559|sp|Q9RAA9.1|DPO1_RICFE RecName: Full=DNA polymerase I; Short=POL I
gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis]
gi|67005164|gb|AAY62090.1| DNA polymerase I (POL I) [Rickettsia felis URRWXCal2]
Length = 922
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRPP P+ +V L ++ ++ ++E G EADD+I A ++
Sbjct: 66 NFRHHIYPEYKANRPPPPEDLVVQLPLVRDVASNLNFPILEKNGYEADDIIATFAAKTAA 125
Query: 62 DGFKIQVVSPNKD 74
G + V+S +KD
Sbjct: 126 LGEDVVVISSDKD 138
>gi|417745487|ref|ZP_12394006.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Shigella flexneri 2930-71]
gi|332764614|gb|EGJ94846.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Shigella flexneri 2930-71]
Length = 884
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 25 FRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKA 84
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 85 GRPVLISTGDKDMAQLVTPNITLI 108
>gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354]
gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|194017403|ref|ZP_03056015.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061]
gi|194011271|gb|EDW20841.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061]
Length = 879
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + YK R TP + + + +++ + A +K E+P EADD+IG LAV + +
Sbjct: 67 FRHETFKEYKGGRQKTPPELSEQMPFIRELLDAYQVKRYELPQYEADDIIGTLAVEAEKN 126
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF++++ S +KD LS + I +G
Sbjct: 127 GFEVKIFSGDKDLTQLSTDHTTVAITKKG 155
>gi|114769975|ref|ZP_01447585.1| DNA polymerase I [Rhodobacterales bacterium HTCC2255]
gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255]
Length = 932
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK NRPP P+ ++ + + +A + IE G EADD++ LAV++ +
Sbjct: 74 FRSDIYPEYKMNRPPAPEDLIPQFPLTRDATRAFGLACIEQEGFEADDIMATLAVQAREA 133
Query: 63 GFKIQVVSPNKD 74
G ++ +VS +KD
Sbjct: 134 GGQVTIVSSDKD 145
>gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS]
gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|433050332|ref|ZP_20237648.1| DNA polymerase I [Escherichia coli KTE120]
gi|431561430|gb|ELI34800.1| DNA polymerase I [Escherichia coli KTE120]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|422784554|ref|ZP_16837333.1| DNA polymerase I [Escherichia coli TW10509]
gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145]
gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145]
Length = 931
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
RHT + +YK NR P+ + L Y+K I+ +I VI G EADDVIG LA ++ G
Sbjct: 67 RHTGFEAYKANRQAMPEDLAVALPYVKKLIEGFNIPVITSDGYEADDVIGTLAKQAEKVG 126
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRGFEL 94
+ + ++P+KD +Q++S ++ + + A G ++
Sbjct: 127 YTVYCMTPDKDFAQLVSENIFIYKPARMGNDM 158
>gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026]
gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412]
gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302]
gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
gi|419931853|ref|ZP_14449226.1| DNA polymerase I [Escherichia coli 576-1]
gi|422334909|ref|ZP_16415913.1| DNA polymerase I [Escherichia coli 4_1_47FAA]
gi|432355894|ref|ZP_19599153.1| DNA polymerase I [Escherichia coli KTE2]
gi|432404259|ref|ZP_19647000.1| DNA polymerase I [Escherichia coli KTE26]
gi|432428526|ref|ZP_19671004.1| DNA polymerase I [Escherichia coli KTE181]
gi|432463227|ref|ZP_19705356.1| DNA polymerase I [Escherichia coli KTE204]
gi|432478222|ref|ZP_19720205.1| DNA polymerase I [Escherichia coli KTE208]
gi|432491694|ref|ZP_19733551.1| DNA polymerase I [Escherichia coli KTE213]
gi|432520075|ref|ZP_19757252.1| DNA polymerase I [Escherichia coli KTE228]
gi|432540243|ref|ZP_19777132.1| DNA polymerase I [Escherichia coli KTE235]
gi|432633807|ref|ZP_19869722.1| DNA polymerase I [Escherichia coli KTE80]
gi|432643459|ref|ZP_19879278.1| DNA polymerase I [Escherichia coli KTE83]
gi|432663581|ref|ZP_19899189.1| DNA polymerase I [Escherichia coli KTE116]
gi|432768236|ref|ZP_20002625.1| DNA polymerase I [Escherichia coli KTE50]
gi|432772636|ref|ZP_20006945.1| DNA polymerase I [Escherichia coli KTE54]
gi|432841719|ref|ZP_20075172.1| DNA polymerase I [Escherichia coli KTE140]
gi|432882609|ref|ZP_20098331.1| DNA polymerase I [Escherichia coli KTE158]
gi|432915527|ref|ZP_20120782.1| DNA polymerase I [Escherichia coli KTE190]
gi|432964712|ref|ZP_20153737.1| DNA polymerase I [Escherichia coli KTE202]
gi|433021116|ref|ZP_20209190.1| DNA polymerase I [Escherichia coli KTE105]
gi|433055490|ref|ZP_20242640.1| DNA polymerase I [Escherichia coli KTE122]
gi|433065332|ref|ZP_20252231.1| DNA polymerase I [Escherichia coli KTE125]
gi|433070226|ref|ZP_20256985.1| DNA polymerase I [Escherichia coli KTE128]
gi|433161016|ref|ZP_20345828.1| DNA polymerase I [Escherichia coli KTE177]
gi|433180735|ref|ZP_20365104.1| DNA polymerase I [Escherichia coli KTE82]
gi|433205616|ref|ZP_20389355.1| DNA polymerase I [Escherichia coli KTE95]
gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Escherichia coli UMN026]
gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412]
gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302]
gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
gi|373244191|gb|EHP63681.1| DNA polymerase I [Escherichia coli 4_1_47FAA]
gi|388420338|gb|EIL80034.1| DNA polymerase I [Escherichia coli 576-1]
gi|430871724|gb|ELB95351.1| DNA polymerase I [Escherichia coli KTE2]
gi|430922333|gb|ELC43089.1| DNA polymerase I [Escherichia coli KTE26]
gi|430950049|gb|ELC69440.1| DNA polymerase I [Escherichia coli KTE181]
gi|430984932|gb|ELD01542.1| DNA polymerase I [Escherichia coli KTE204]
gi|431001523|gb|ELD17104.1| DNA polymerase I [Escherichia coli KTE208]
gi|431016941|gb|ELD30460.1| DNA polymerase I [Escherichia coli KTE213]
gi|431047187|gb|ELD57192.1| DNA polymerase I [Escherichia coli KTE228]
gi|431066391|gb|ELD75020.1| DNA polymerase I [Escherichia coli KTE235]
gi|431166622|gb|ELE66929.1| DNA polymerase I [Escherichia coli KTE80]
gi|431176614|gb|ELE76557.1| DNA polymerase I [Escherichia coli KTE83]
gi|431206194|gb|ELF04619.1| DNA polymerase I [Escherichia coli KTE116]
gi|431321500|gb|ELG09101.1| DNA polymerase I [Escherichia coli KTE50]
gi|431323058|gb|ELG10611.1| DNA polymerase I [Escherichia coli KTE54]
gi|431384771|gb|ELG68773.1| DNA polymerase I [Escherichia coli KTE140]
gi|431422951|gb|ELH05081.1| DNA polymerase I [Escherichia coli KTE158]
gi|431435129|gb|ELH16742.1| DNA polymerase I [Escherichia coli KTE190]
gi|431467009|gb|ELH47021.1| DNA polymerase I [Escherichia coli KTE202]
gi|431526282|gb|ELI03039.1| DNA polymerase I [Escherichia coli KTE105]
gi|431565150|gb|ELI38292.1| DNA polymerase I [Escherichia coli KTE122]
gi|431577389|gb|ELI50024.1| DNA polymerase I [Escherichia coli KTE125]
gi|431578256|gb|ELI50867.1| DNA polymerase I [Escherichia coli KTE128]
gi|431672917|gb|ELJ39150.1| DNA polymerase I [Escherichia coli KTE177]
gi|431697508|gb|ELJ62617.1| DNA polymerase I [Escherichia coli KTE82]
gi|431715344|gb|ELJ79509.1| DNA polymerase I [Escherichia coli KTE95]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012]
gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
exonuclease [Escherichia coli str. K-12 substr. MG1655]
gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046]
gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A]
gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739]
gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94]
gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638]
gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A]
gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22]
gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019]
gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171]
gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1]
gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11]
gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1]
gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989]
gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952]
gi|251787128|ref|YP_003001432.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5'
exonuclease [Escherichia coli BL21(DE3)]
gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606]
gi|254290565|ref|YP_003056313.1| DNA polymerase I [Escherichia coli BL21(DE3)]
gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088]
gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736]
gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718]
gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271]
gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280]
gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591]
gi|332282738|ref|ZP_08395151.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
exonuclease [Shigella sp. D9]
gi|383181120|ref|YP_005459125.1| DNA polymerase I [Shigella sonnei 53G]
gi|386282476|ref|ZP_10060127.1| DNA polymerase I [Escherichia sp. 4_1_40B]
gi|386597612|ref|YP_006094012.1| DNA polymerase I [Escherichia coli DH1]
gi|387623508|ref|YP_006131136.1| DNA polymerase I [Escherichia coli DH1]
gi|388479394|ref|YP_491586.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
3'->5' exonuclease [Escherichia coli str. K-12 substr.
W3110]
gi|415799665|ref|ZP_11498922.1| DNA polymerase I [Escherichia coli E128010]
gi|415810400|ref|ZP_11502807.1| DNA polymerase I [Escherichia coli LT-68]
gi|415838362|ref|ZP_11520340.1| DNA polymerase I [Escherichia coli RN587/1]
gi|415876603|ref|ZP_11542985.1| DNA polymerase I [Escherichia coli MS 79-10]
gi|416269221|ref|ZP_11642393.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112]
gi|417121886|ref|ZP_11971259.1| DNA-directed DNA polymerase [Escherichia coli 97.0246]
gi|417132273|ref|ZP_11977058.1| DNA-directed DNA polymerase [Escherichia coli 5.0588]
gi|417148809|ref|ZP_11988900.1| DNA-directed DNA polymerase [Escherichia coli 1.2264]
gi|417157845|ref|ZP_11995469.1| DNA-directed DNA polymerase [Escherichia coli 96.0497]
gi|417161211|ref|ZP_11997544.1| DNA-directed DNA polymerase [Escherichia coli 99.0741]
gi|417175027|ref|ZP_12004823.1| DNA-directed DNA polymerase [Escherichia coli 3.2608]
gi|417185465|ref|ZP_12010866.1| DNA-directed DNA polymerase [Escherichia coli 93.0624]
gi|417222352|ref|ZP_12025792.1| DNA-directed DNA polymerase [Escherichia coli 96.154]
gi|417241761|ref|ZP_12037518.1| DNA-directed DNA polymerase [Escherichia coli 9.0111]
gi|417249349|ref|ZP_12041133.1| DNA-directed DNA polymerase [Escherichia coli 4.0967]
gi|417273368|ref|ZP_12060715.1| DNA-directed DNA polymerase [Escherichia coli 2.4168]
gi|417279156|ref|ZP_12066466.1| DNA-directed DNA polymerase [Escherichia coli 3.2303]
gi|417281688|ref|ZP_12068988.1| DNA-directed DNA polymerase [Escherichia coli 3003]
gi|417293514|ref|ZP_12080793.1| DNA-directed DNA polymerase [Escherichia coli B41]
gi|417599297|ref|ZP_12249921.1| DNA polymerase I [Escherichia coli 3030-1]
gi|417604764|ref|ZP_12255325.1| DNA polymerase I [Escherichia coli STEC_94C]
gi|417615522|ref|ZP_12265969.1| DNA polymerase I [Escherichia coli STEC_EH250]
gi|417626036|ref|ZP_12276323.1| DNA polymerase I [Escherichia coli STEC_H.1.8]
gi|417636816|ref|ZP_12287020.1| DNA polymerase I [Escherichia coli STEC_S1191]
gi|417669451|ref|ZP_12318986.1| DNA polymerase I [Escherichia coli STEC_O31]
gi|417944988|ref|ZP_12588226.1| DNA polymerase I [Escherichia coli XH140A]
gi|417976886|ref|ZP_12617676.1| DNA polymerase I [Escherichia coli XH001]
gi|418305488|ref|ZP_12917282.1| DNA polymerase I [Escherichia coli UMNF18]
gi|418943606|ref|ZP_13496778.1| DNA polymerase I [Escherichia coli O157:H43 str. T22]
gi|418960257|ref|ZP_13512150.1| DNA-directed DNA polymerase [Escherichia coli J53]
gi|419144967|ref|ZP_13689692.1| DNA polymerase I [Escherichia coli DEC6A]
gi|419150986|ref|ZP_13695630.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC6B]
gi|419156374|ref|ZP_13700926.1| DNA polymerase I [Escherichia coli DEC6C]
gi|419177643|ref|ZP_13721448.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC7B]
gi|419292076|ref|ZP_13834157.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC11A]
gi|419297355|ref|ZP_13839388.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC11B]
gi|419302947|ref|ZP_13844936.1| DNA polymerase I [Escherichia coli DEC11C]
gi|419308892|ref|ZP_13850779.1| DNA polymerase I [Escherichia coli DEC11D]
gi|419313857|ref|ZP_13855711.1| DNA polymerase I [Escherichia coli DEC11E]
gi|419319356|ref|ZP_13861149.1| DNA polymerase I [Escherichia coli DEC12A]
gi|419325305|ref|ZP_13866990.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC12B]
gi|419331576|ref|ZP_13873166.1| DNA polymerase I [Escherichia coli DEC12C]
gi|419336747|ref|ZP_13878260.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC12D]
gi|419342444|ref|ZP_13883895.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC12E]
gi|419393813|ref|ZP_13934612.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15A]
gi|419399255|ref|ZP_13940013.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15B]
gi|419404501|ref|ZP_13945216.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15C]
gi|419409666|ref|ZP_13950346.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15D]
gi|419415224|ref|ZP_13955853.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15E]
gi|419804621|ref|ZP_14329775.1| DNA-directed DNA polymerase [Escherichia coli AI27]
gi|419812011|ref|ZP_14336882.1| DNA polymerase I [Escherichia coli O32:H37 str. P4]
gi|419866526|ref|ZP_14388885.1| DNA polymerase I [Escherichia coli O103:H25 str. CVM9340]
gi|419871483|ref|ZP_14393539.1| DNA polymerase I [Escherichia coli O103:H2 str. CVM9450]
gi|419927717|ref|ZP_14445450.1| DNA polymerase I [Escherichia coli 541-1]
gi|419938064|ref|ZP_14454907.1| DNA polymerase I [Escherichia coli 75]
gi|420361304|ref|ZP_14862244.1| DNA polymerase I [Shigella sonnei 3226-85]
gi|420393995|ref|ZP_14893238.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli EPEC C342-62]
gi|421684781|ref|ZP_16124563.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Shigella flexneri 1485-80]
gi|421777457|ref|ZP_16214053.1| DNA-directed DNA polymerase [Escherichia coli AD30]
gi|422352191|ref|ZP_16432985.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3]
gi|422773743|ref|ZP_16827425.1| DNA polymerase I [Escherichia coli E482]
gi|422789071|ref|ZP_16841804.1| DNA polymerase I [Escherichia coli H489]
gi|422793704|ref|ZP_16846398.1| DNA polymerase I [Escherichia coli TA007]
gi|422819009|ref|ZP_16867221.1| DNA polymerase I [Escherichia coli M919]
gi|422832065|ref|ZP_16880190.1| DNA polymerase I [Escherichia coli B093]
gi|423703380|ref|ZP_17677812.1| DNA polymerase I [Escherichia coli H730]
gi|423708167|ref|ZP_17682547.1| DNA polymerase I [Escherichia coli B799]
gi|425122204|ref|ZP_18523872.1| DNA polymerase I [Escherichia coli 8.0569]
gi|425291075|ref|ZP_18681881.1| DNA polymerase I [Escherichia coli 3006]
gi|432379093|ref|ZP_19622073.1| DNA polymerase I [Escherichia coli KTE12]
gi|432394529|ref|ZP_19637344.1| DNA polymerase I [Escherichia coli KTE21]
gi|432483272|ref|ZP_19725218.1| DNA polymerase I [Escherichia coli KTE210]
gi|432528715|ref|ZP_19765785.1| DNA polymerase I [Escherichia coli KTE233]
gi|432531649|ref|ZP_19768670.1| DNA polymerase I [Escherichia coli KTE234]
gi|432545697|ref|ZP_19782518.1| DNA polymerase I [Escherichia coli KTE236]
gi|432551175|ref|ZP_19787922.1| DNA polymerase I [Escherichia coli KTE237]
gi|432624231|ref|ZP_19860242.1| DNA polymerase I [Escherichia coli KTE76]
gi|432629480|ref|ZP_19865443.1| DNA polymerase I [Escherichia coli KTE77]
gi|432634762|ref|ZP_19870658.1| DNA polymerase I [Escherichia coli KTE81]
gi|432663105|ref|ZP_19898732.1| DNA polymerase I [Escherichia coli KTE111]
gi|432672950|ref|ZP_19908466.1| DNA polymerase I [Escherichia coli KTE119]
gi|432677037|ref|ZP_19912476.1| DNA polymerase I [Escherichia coli KTE142]
gi|432689186|ref|ZP_19924450.1| DNA polymerase I [Escherichia coli KTE161]
gi|432706590|ref|ZP_19941682.1| DNA polymerase I [Escherichia coli KTE171]
gi|432734904|ref|ZP_19969717.1| DNA polymerase I [Escherichia coli KTE42]
gi|432752313|ref|ZP_19986889.1| DNA polymerase I [Escherichia coli KTE29]
gi|432762720|ref|ZP_19997180.1| DNA polymerase I [Escherichia coli KTE48]
gi|432808104|ref|ZP_20042015.1| DNA polymerase I [Escherichia coli KTE91]
gi|432829476|ref|ZP_20063089.1| DNA polymerase I [Escherichia coli KTE135]
gi|432836870|ref|ZP_20070379.1| DNA polymerase I [Escherichia coli KTE136]
gi|432931655|ref|ZP_20131634.1| DNA polymerase I [Escherichia coli KTE184]
gi|432943551|ref|ZP_20140386.1| DNA polymerase I [Escherichia coli KTE196]
gi|432951137|ref|ZP_20144857.1| DNA polymerase I [Escherichia coli KTE197]
gi|433045393|ref|ZP_20232864.1| DNA polymerase I [Escherichia coli KTE117]
gi|433094254|ref|ZP_20280500.1| DNA polymerase I [Escherichia coli KTE138]
gi|433195916|ref|ZP_20379880.1| DNA polymerase I [Escherichia coli KTE90]
gi|442595830|ref|ZP_21013666.1| DNA polymerase I [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|442598570|ref|ZP_21016330.1| DNA polymerase I [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|450253059|ref|ZP_21902332.1| DNA polymerase I [Escherichia coli S17]
gi|118825|sp|P00582.1|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I
gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli]
gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli]
gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655]
gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
exonuclease [Escherichia coli str. K-12 substr. MG1655]
gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046]
gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
3'->5' exonuclease [Escherichia coli str. K12 substr.
W3110]
gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A]
gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739]
gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94]
gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638]
gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A]
gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22]
gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019]
gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171]
gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1]
gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11]
gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Escherichia coli 55989]
gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Escherichia coli IAI1]
gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952]
gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5'
exonuclease [Escherichia coli BL21(DE3)]
gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606]
gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)]
gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1]
gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088]
gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1]
gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112]
gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010]
gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68]
gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1]
gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482]
gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489]
gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007]
gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3]
gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736]
gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718]
gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271]
gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280]
gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591]
gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
exonuclease [Shigella sp. D9]
gi|339417586|gb|AEJ59258.1| DNA polymerase I [Escherichia coli UMNF18]
gi|342363371|gb|EGU27480.1| DNA polymerase I [Escherichia coli XH140A]
gi|342928542|gb|EGU97264.1| DNA polymerase I [Escherichia coli MS 79-10]
gi|344193570|gb|EGV47650.1| DNA polymerase I [Escherichia coli XH001]
gi|345346869|gb|EGW79186.1| DNA polymerase I [Escherichia coli STEC_94C]
gi|345348793|gb|EGW81086.1| DNA polymerase I [Escherichia coli 3030-1]
gi|345357418|gb|EGW89613.1| DNA polymerase I [Escherichia coli STEC_EH250]
gi|345371340|gb|EGX03310.1| DNA polymerase I [Escherichia coli STEC_H.1.8]
gi|345384637|gb|EGX14498.1| DNA polymerase I [Escherichia coli STEC_S1191]
gi|359333988|dbj|BAL40435.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
exonuclease [Escherichia coli str. K-12 substr. MDS42]
gi|371615784|gb|EHO04170.1| DNA polymerase I [Escherichia coli B093]
gi|375321086|gb|EHS66959.1| DNA polymerase I [Escherichia coli O157:H43 str. T22]
gi|377988276|gb|EHV51455.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC6B]
gi|377988817|gb|EHV51988.1| DNA polymerase I [Escherichia coli DEC6A]
gi|377991817|gb|EHV54966.1| DNA polymerase I [Escherichia coli DEC6C]
gi|378028339|gb|EHV90958.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC7B]
gi|378124368|gb|EHW85776.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC11A]
gi|378137843|gb|EHW99105.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC11B]
gi|378143858|gb|EHX05039.1| DNA polymerase I [Escherichia coli DEC11D]
gi|378145657|gb|EHX06814.1| DNA polymerase I [Escherichia coli DEC11C]
gi|378154412|gb|EHX15486.1| DNA polymerase I [Escherichia coli DEC11E]
gi|378161850|gb|EHX22824.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC12B]
gi|378164380|gb|EHX25325.1| DNA polymerase I [Escherichia coli DEC12A]
gi|378165175|gb|EHX26112.1| DNA polymerase I [Escherichia coli DEC12C]
gi|378179479|gb|EHX40205.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC12D]
gi|378182119|gb|EHX42773.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC12E]
gi|378234204|gb|EHX94283.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15A]
gi|378239748|gb|EHX99727.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15B]
gi|378242417|gb|EHY02370.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15C]
gi|378250296|gb|EHY10201.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15D]
gi|378254981|gb|EHY14840.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15E]
gi|384377072|gb|EIE34970.1| DNA-directed DNA polymerase [Escherichia coli J53]
gi|384472339|gb|EIE56396.1| DNA-directed DNA polymerase [Escherichia coli AI27]
gi|385155230|gb|EIF17235.1| DNA polymerase I [Escherichia coli O32:H37 str. P4]
gi|385537437|gb|EIF84309.1| DNA polymerase I [Escherichia coli M919]
gi|385708228|gb|EIG45242.1| DNA polymerase I [Escherichia coli H730]
gi|385709080|gb|EIG46082.1| DNA polymerase I [Escherichia coli B799]
gi|386120525|gb|EIG69151.1| DNA polymerase I [Escherichia sp. 4_1_40B]
gi|386147961|gb|EIG94400.1| DNA-directed DNA polymerase [Escherichia coli 97.0246]
gi|386150127|gb|EIH01416.1| DNA-directed DNA polymerase [Escherichia coli 5.0588]
gi|386161030|gb|EIH22833.1| DNA-directed DNA polymerase [Escherichia coli 1.2264]
gi|386166595|gb|EIH33115.1| DNA-directed DNA polymerase [Escherichia coli 96.0497]
gi|386174350|gb|EIH46350.1| DNA-directed DNA polymerase [Escherichia coli 99.0741]
gi|386177719|gb|EIH55198.1| DNA-directed DNA polymerase [Escherichia coli 3.2608]
gi|386182765|gb|EIH65521.1| DNA-directed DNA polymerase [Escherichia coli 93.0624]
gi|386202154|gb|EII01145.1| DNA-directed DNA polymerase [Escherichia coli 96.154]
gi|386211878|gb|EII22329.1| DNA-directed DNA polymerase [Escherichia coli 9.0111]
gi|386219670|gb|EII36134.1| DNA-directed DNA polymerase [Escherichia coli 4.0967]
gi|386234545|gb|EII66523.1| DNA-directed DNA polymerase [Escherichia coli 2.4168]
gi|386237933|gb|EII74873.1| DNA-directed DNA polymerase [Escherichia coli 3.2303]
gi|386246017|gb|EII87747.1| DNA-directed DNA polymerase [Escherichia coli 3003]
gi|386251702|gb|EIJ01394.1| DNA-directed DNA polymerase [Escherichia coli B41]
gi|388334861|gb|EIL01442.1| DNA polymerase I [Escherichia coli O103:H25 str. CVM9340]
gi|388337025|gb|EIL03541.1| DNA polymerase I [Escherichia coli O103:H2 str. CVM9450]
gi|388406870|gb|EIL67252.1| DNA polymerase I [Escherichia coli 541-1]
gi|388410987|gb|EIL71180.1| DNA polymerase I [Escherichia coli 75]
gi|391277164|gb|EIQ35915.1| DNA polymerase I [Shigella sonnei 3226-85]
gi|391309398|gb|EIQ67068.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli EPEC C342-62]
gi|397782928|gb|EJK93791.1| DNA polymerase I [Escherichia coli STEC_O31]
gi|404335843|gb|EJZ62311.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Shigella flexneri 1485-80]
gi|408208645|gb|EKI33277.1| DNA polymerase I [Escherichia coli 3006]
gi|408457555|gb|EKJ81350.1| DNA-directed DNA polymerase [Escherichia coli AD30]
gi|408563865|gb|EKK39986.1| DNA polymerase I [Escherichia coli 8.0569]
gi|430895602|gb|ELC17864.1| DNA polymerase I [Escherichia coli KTE12]
gi|430913383|gb|ELC34505.1| DNA polymerase I [Escherichia coli KTE21]
gi|431003008|gb|ELD18495.1| DNA polymerase I [Escherichia coli KTE210]
gi|431059830|gb|ELD69177.1| DNA polymerase I [Escherichia coli KTE233]
gi|431066733|gb|ELD75356.1| DNA polymerase I [Escherichia coli KTE234]
gi|431070211|gb|ELD78517.1| DNA polymerase I [Escherichia coli KTE236]
gi|431075321|gb|ELD82843.1| DNA polymerase I [Escherichia coli KTE237]
gi|431155378|gb|ELE56134.1| DNA polymerase I [Escherichia coli KTE76]
gi|431159909|gb|ELE60452.1| DNA polymerase I [Escherichia coli KTE77]
gi|431175768|gb|ELE75758.1| DNA polymerase I [Escherichia coli KTE81]
gi|431196545|gb|ELE95471.1| DNA polymerase I [Escherichia coli KTE111]
gi|431207064|gb|ELF05372.1| DNA polymerase I [Escherichia coli KTE119]
gi|431209703|gb|ELF07774.1| DNA polymerase I [Escherichia coli KTE142]
gi|431234211|gb|ELF29618.1| DNA polymerase I [Escherichia coli KTE161]
gi|431239775|gb|ELF34245.1| DNA polymerase I [Escherichia coli KTE171]
gi|431289832|gb|ELF80563.1| DNA polymerase I [Escherichia coli KTE42]
gi|431293243|gb|ELF83623.1| DNA polymerase I [Escherichia coli KTE29]
gi|431315051|gb|ELG02979.1| DNA polymerase I [Escherichia coli KTE48]
gi|431352273|gb|ELG39051.1| DNA polymerase I [Escherichia coli KTE91]
gi|431380854|gb|ELG65490.1| DNA polymerase I [Escherichia coli KTE136]
gi|431381789|gb|ELG66140.1| DNA polymerase I [Escherichia coli KTE135]
gi|431458841|gb|ELH39160.1| DNA polymerase I [Escherichia coli KTE184]
gi|431466770|gb|ELH46787.1| DNA polymerase I [Escherichia coli KTE196]
gi|431477121|gb|ELH56892.1| DNA polymerase I [Escherichia coli KTE197]
gi|431551890|gb|ELI25854.1| DNA polymerase I [Escherichia coli KTE117]
gi|431606368|gb|ELI75745.1| DNA polymerase I [Escherichia coli KTE138]
gi|431712800|gb|ELJ77077.1| DNA polymerase I [Escherichia coli KTE90]
gi|441603992|emb|CCP98800.1| DNA polymerase I [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|441652787|emb|CCQ04105.1| DNA polymerase I [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|449314085|gb|EMD04264.1| DNA polymerase I [Escherichia coli S17]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|432604690|ref|ZP_19840915.1| DNA polymerase I [Escherichia coli KTE66]
gi|431136420|gb|ELE38288.1| DNA polymerase I [Escherichia coli KTE66]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|419926189|ref|ZP_14443990.1| DNA polymerase I [Escherichia coli 541-15]
gi|388383729|gb|EIL45478.1| DNA polymerase I [Escherichia coli 541-15]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|419702721|ref|ZP_14230308.1| DNA polymerase I [Escherichia coli SCI-07]
gi|380346091|gb|EIA34392.1| DNA polymerase I [Escherichia coli SCI-07]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|423090703|ref|ZP_17078989.1| DNA-directed DNA polymerase [Clostridium difficile 70-100-2010]
gi|357555818|gb|EHJ37440.1| DNA-directed DNA polymerase [Clostridium difficile 70-100-2010]
Length = 882
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R PD + + LQ LK + I +E+ G EADD+IG ++ ++ ++
Sbjct: 65 FRHLEYKDYKAGRKGMPDELAEQLQPLKDLLDKFRINRLEIDGYEADDIIGTVSKKAEEN 124
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
G+K+ +V+ +KD+ L+ I +G
Sbjct: 125 GYKVYIVTGDKDAIQLASDNTTTLITKKG 153
>gi|417829955|ref|ZP_12476495.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Shigella flexneri J1713]
gi|420322608|ref|ZP_14824428.1| DNA polymerase I [Shigella flexneri 2850-71]
gi|335573637|gb|EGM59988.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Shigella flexneri J1713]
gi|391245345|gb|EIQ04618.1| DNA polymerase I [Shigella flexneri 2850-71]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|417714586|ref|ZP_12363539.1| DNA polymerase I [Shigella flexneri K-272]
gi|332998506|gb|EGK18104.1| DNA polymerase I [Shigella flexneri K-272]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|424818148|ref|ZP_18243299.1| DNA polymerase I [Escherichia fergusonii ECD227]
gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|422807554|ref|ZP_16855984.1| DNA polymerase I [Escherichia fergusonii B253]
gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143]
gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|387831769|ref|YP_003351706.1| DNA polymerase I [Escherichia coli SE15]
gi|417142077|ref|ZP_11984652.1| DNA-directed DNA polymerase [Escherichia coli 97.0259]
gi|417311422|ref|ZP_12098158.1| DNA polymerase I [Escherichia coli PCN033]
gi|432502435|ref|ZP_19744182.1| DNA polymerase I [Escherichia coli KTE216]
gi|432696743|ref|ZP_19931932.1| DNA polymerase I [Escherichia coli KTE162]
gi|432923158|ref|ZP_20125853.1| DNA polymerase I [Escherichia coli KTE173]
gi|432929913|ref|ZP_20130789.1| DNA polymerase I [Escherichia coli KTE175]
gi|432983401|ref|ZP_20172150.1| DNA polymerase I [Escherichia coli KTE211]
gi|433098708|ref|ZP_20284871.1| DNA polymerase I [Escherichia coli KTE139]
gi|433108140|ref|ZP_20294095.1| DNA polymerase I [Escherichia coli KTE148]
gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15]
gi|338766999|gb|EGP21883.1| DNA polymerase I [Escherichia coli PCN033]
gi|386155101|gb|EIH11456.1| DNA-directed DNA polymerase [Escherichia coli 97.0259]
gi|431025507|gb|ELD38609.1| DNA polymerase I [Escherichia coli KTE216]
gi|431230514|gb|ELF26293.1| DNA polymerase I [Escherichia coli KTE162]
gi|431434104|gb|ELH15756.1| DNA polymerase I [Escherichia coli KTE173]
gi|431439286|gb|ELH20621.1| DNA polymerase I [Escherichia coli KTE175]
gi|431486754|gb|ELH66400.1| DNA polymerase I [Escherichia coli KTE211]
gi|431611837|gb|ELI81100.1| DNA polymerase I [Escherichia coli KTE139]
gi|431623190|gb|ELI91864.1| DNA polymerase I [Escherichia coli KTE148]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972]
gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
gi|386621499|ref|YP_006141079.1| DNA polymerase I [Escherichia coli NA114]
gi|386631826|ref|YP_006151546.1| exonuclease IX [Escherichia coli str. 'clone D i2']
gi|386636746|ref|YP_006156465.1| exonuclease IX [Escherichia coli str. 'clone D i14']
gi|386641513|ref|YP_006108311.1| DNA polymerase I [Escherichia coli ABU 83972]
gi|417287474|ref|ZP_12074760.1| DNA-directed DNA polymerase [Escherichia coli TW07793]
gi|422364493|ref|ZP_16445009.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1]
gi|432414174|ref|ZP_19656824.1| DNA polymerase I [Escherichia coli KTE39]
gi|432424282|ref|ZP_19666817.1| DNA polymerase I [Escherichia coli KTE178]
gi|432434136|ref|ZP_19676555.1| DNA polymerase I [Escherichia coli KTE187]
gi|432438837|ref|ZP_19681212.1| DNA polymerase I [Escherichia coli KTE188]
gi|432459022|ref|ZP_19701194.1| DNA polymerase I [Escherichia coli KTE201]
gi|432493131|ref|ZP_19734959.1| DNA polymerase I [Escherichia coli KTE214]
gi|432506772|ref|ZP_19748488.1| DNA polymerase I [Escherichia coli KTE220]
gi|432526353|ref|ZP_19763463.1| DNA polymerase I [Escherichia coli KTE230]
gi|432561148|ref|ZP_19797798.1| DNA polymerase I [Escherichia coli KTE49]
gi|432571154|ref|ZP_19807657.1| DNA polymerase I [Escherichia coli KTE53]
gi|432595133|ref|ZP_19831441.1| DNA polymerase I [Escherichia coli KTE60]
gi|432605317|ref|ZP_19841525.1| DNA polymerase I [Escherichia coli KTE67]
gi|432653533|ref|ZP_19889269.1| DNA polymerase I [Escherichia coli KTE87]
gi|432682655|ref|ZP_19918005.1| DNA polymerase I [Escherichia coli KTE143]
gi|432708272|ref|ZP_19943346.1| DNA polymerase I [Escherichia coli KTE6]
gi|432781201|ref|ZP_20015410.1| DNA polymerase I [Escherichia coli KTE63]
gi|432799771|ref|ZP_20033771.1| DNA polymerase I [Escherichia coli KTE84]
gi|432847117|ref|ZP_20079611.1| DNA polymerase I [Escherichia coli KTE141]
gi|432891500|ref|ZP_20104191.1| DNA polymerase I [Escherichia coli KTE165]
gi|432976103|ref|ZP_20164934.1| DNA polymerase I [Escherichia coli KTE209]
gi|432993083|ref|ZP_20181713.1| DNA polymerase I [Escherichia coli KTE218]
gi|433002280|ref|ZP_20190795.1| DNA polymerase I [Escherichia coli KTE223]
gi|433060405|ref|ZP_20247433.1| DNA polymerase I [Escherichia coli KTE124]
gi|433089610|ref|ZP_20275964.1| DNA polymerase I [Escherichia coli KTE137]
gi|433117813|ref|ZP_20303589.1| DNA polymerase I [Escherichia coli KTE153]
gi|433127515|ref|ZP_20313052.1| DNA polymerase I [Escherichia coli KTE160]
gi|433141588|ref|ZP_20326822.1| DNA polymerase I [Escherichia coli KTE167]
gi|433151540|ref|ZP_20336533.1| DNA polymerase I [Escherichia coli KTE174]
gi|433210033|ref|ZP_20393692.1| DNA polymerase I [Escherichia coli KTE97]
gi|433214912|ref|ZP_20398482.1| DNA polymerase I [Escherichia coli KTE99]
gi|442607185|ref|ZP_21021974.1| DNA polymerase I [Escherichia coli Nissle 1917]
gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972]
gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972]
gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1]
gi|333972000|gb|AEG38805.1| DNA polymerase I [Escherichia coli NA114]
gi|355422725|gb|AER86922.1| exonuclease IX [Escherichia coli str. 'clone D i2']
gi|355427645|gb|AER91841.1| exonuclease IX [Escherichia coli str. 'clone D i14']
gi|386248259|gb|EII94431.1| DNA-directed DNA polymerase [Escherichia coli TW07793]
gi|430932134|gb|ELC52567.1| DNA polymerase I [Escherichia coli KTE39]
gi|430941335|gb|ELC61488.1| DNA polymerase I [Escherichia coli KTE178]
gi|430949673|gb|ELC69100.1| DNA polymerase I [Escherichia coli KTE187]
gi|430959557|gb|ELC77874.1| DNA polymerase I [Escherichia coli KTE188]
gi|430978834|gb|ELC95628.1| DNA polymerase I [Escherichia coli KTE201]
gi|431030755|gb|ELD43761.1| DNA polymerase I [Escherichia coli KTE214]
gi|431034507|gb|ELD46438.1| DNA polymerase I [Escherichia coli KTE220]
gi|431047137|gb|ELD57143.1| DNA polymerase I [Escherichia coli KTE230]
gi|431088066|gb|ELD93971.1| DNA polymerase I [Escherichia coli KTE49]
gi|431096778|gb|ELE02238.1| DNA polymerase I [Escherichia coli KTE53]
gi|431125390|gb|ELE27805.1| DNA polymerase I [Escherichia coli KTE60]
gi|431143842|gb|ELE45556.1| DNA polymerase I [Escherichia coli KTE67]
gi|431186650|gb|ELE86190.1| DNA polymerase I [Escherichia coli KTE87]
gi|431216927|gb|ELF14519.1| DNA polymerase I [Escherichia coli KTE143]
gi|431254716|gb|ELF47984.1| DNA polymerase I [Escherichia coli KTE6]
gi|431333918|gb|ELG21094.1| DNA polymerase I [Escherichia coli KTE63]
gi|431353976|gb|ELG40727.1| DNA polymerase I [Escherichia coli KTE84]
gi|431391752|gb|ELG75358.1| DNA polymerase I [Escherichia coli KTE141]
gi|431429602|gb|ELH11527.1| DNA polymerase I [Escherichia coli KTE165]
gi|431485237|gb|ELH64901.1| DNA polymerase I [Escherichia coli KTE209]
gi|431503843|gb|ELH82577.1| DNA polymerase I [Escherichia coli KTE223]
gi|431513852|gb|ELH91931.1| DNA polymerase I [Escherichia coli KTE218]
gi|431565348|gb|ELI38481.1| DNA polymerase I [Escherichia coli KTE124]
gi|431600133|gb|ELI69809.1| DNA polymerase I [Escherichia coli KTE137]
gi|431630020|gb|ELI98362.1| DNA polymerase I [Escherichia coli KTE153]
gi|431639519|gb|ELJ07375.1| DNA polymerase I [Escherichia coli KTE160]
gi|431655070|gb|ELJ22111.1| DNA polymerase I [Escherichia coli KTE167]
gi|431666577|gb|ELJ33205.1| DNA polymerase I [Escherichia coli KTE174]
gi|431727834|gb|ELJ91569.1| DNA polymerase I [Escherichia coli KTE97]
gi|431731156|gb|ELJ94666.1| DNA polymerase I [Escherichia coli KTE99]
gi|441711644|emb|CCQ07951.1| DNA polymerase I [Escherichia coli Nissle 1917]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|222158571|ref|YP_002558710.1| DNA polymerase I [Escherichia coli LF82]
gi|387619172|ref|YP_006122194.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C]
gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82]
gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 str. EDL933]
gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000]
gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966]
gi|386616683|ref|YP_006136349.1| DNA polymerase I PolA [Escherichia coli UMNK88]
gi|387509307|ref|YP_006161563.1| DNA polymerase I [Escherichia coli O55:H7 str. RM12579]
gi|387614553|ref|YP_006117669.1| DNA polymerase I [Escherichia coli ETEC H10407]
gi|387885085|ref|YP_006315387.1| DNA polymerase I [Escherichia coli Xuzhou21]
gi|404377251|ref|ZP_10982388.1| DNA polymerase I [Escherichia sp. 1_1_43]
gi|416315402|ref|ZP_11659340.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044]
gi|416319691|ref|ZP_11662243.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212]
gi|416327969|ref|ZP_11667838.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125]
gi|416790193|ref|ZP_11881030.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89]
gi|416812817|ref|ZP_11890840.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97]
gi|416823301|ref|ZP_11895457.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905]
gi|416833614|ref|ZP_11900452.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61]
gi|419047993|ref|ZP_13594921.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3A]
gi|419053738|ref|ZP_13600602.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3B]
gi|419059774|ref|ZP_13606571.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3C]
gi|419065163|ref|ZP_13611869.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3D]
gi|419078095|ref|ZP_13623590.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3F]
gi|419089167|ref|ZP_13634514.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4B]
gi|419095008|ref|ZP_13640281.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4C]
gi|419100900|ref|ZP_13646084.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4D]
gi|419106496|ref|ZP_13651616.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4E]
gi|419111890|ref|ZP_13656938.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4F]
gi|419117425|ref|ZP_13662430.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC5A]
gi|419123152|ref|ZP_13668090.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC5B]
gi|419128646|ref|ZP_13673513.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC5C]
gi|419139223|ref|ZP_13684011.1| DNA polymerase I [Escherichia coli DEC5E]
gi|420277991|ref|ZP_14780268.1| DNA polymerase I [Escherichia coli PA40]
gi|420280179|ref|ZP_14782432.1| DNA polymerase I [Escherichia coli TW06591]
gi|420289423|ref|ZP_14791602.1| DNA polymerase I [Escherichia coli TW10246]
gi|420295048|ref|ZP_14797154.1| DNA polymerase I [Escherichia coli TW11039]
gi|420300999|ref|ZP_14803039.1| DNA polymerase I [Escherichia coli TW09109]
gi|420306942|ref|ZP_14808926.1| DNA polymerase I [Escherichia coli TW10119]
gi|420312224|ref|ZP_14814148.1| DNA polymerase I [Escherichia coli EC1738]
gi|420318013|ref|ZP_14819880.1| DNA polymerase I [Escherichia coli EC1734]
gi|421814930|ref|ZP_16250627.1| DNA polymerase I [Escherichia coli 8.0416]
gi|421820663|ref|ZP_16256144.1| DNA polymerase I [Escherichia coli 10.0821]
gi|421826640|ref|ZP_16261991.1| DNA polymerase I [Escherichia coli FRIK920]
gi|421827511|ref|ZP_16262850.1| DNA polymerase I [Escherichia coli PA7]
gi|422768942|ref|ZP_16822665.1| DNA polymerase I [Escherichia coli E1520]
gi|424080193|ref|ZP_17817130.1| DNA polymerase I [Escherichia coli FDA505]
gi|424086588|ref|ZP_17823056.1| DNA polymerase I [Escherichia coli FDA517]
gi|424112525|ref|ZP_17846734.1| DNA polymerase I [Escherichia coli 93-001]
gi|424118459|ref|ZP_17852276.1| DNA polymerase I [Escherichia coli PA3]
gi|424124658|ref|ZP_17857937.1| DNA polymerase I [Escherichia coli PA5]
gi|424150061|ref|ZP_17881419.1| DNA polymerase I [Escherichia coli PA15]
gi|424163789|ref|ZP_17886839.1| DNA polymerase I [Escherichia coli PA24]
gi|424489790|ref|ZP_17938309.1| DNA polymerase I [Escherichia coli TW09098]
gi|424496486|ref|ZP_17943998.1| DNA polymerase I [Escherichia coli TW09195]
gi|424509383|ref|ZP_17955732.1| DNA polymerase I [Escherichia coli EC4196]
gi|424516787|ref|ZP_17961353.1| DNA polymerase I [Escherichia coli TW14313]
gi|424553362|ref|ZP_17995171.1| DNA polymerase I [Escherichia coli EC4439]
gi|424559563|ref|ZP_18000939.1| DNA polymerase I [Escherichia coli EC4436]
gi|424565884|ref|ZP_18006869.1| DNA polymerase I [Escherichia coli EC4437]
gi|424583993|ref|ZP_18023622.1| DNA polymerase I [Escherichia coli EC1863]
gi|425100667|ref|ZP_18503386.1| DNA polymerase I [Escherichia coli 3.4870]
gi|425106741|ref|ZP_18509039.1| DNA polymerase I [Escherichia coli 5.2239]
gi|425134439|ref|ZP_18535274.1| DNA polymerase I [Escherichia coli 8.2524]
gi|425141033|ref|ZP_18541397.1| DNA polymerase I [Escherichia coli 10.0833]
gi|425152823|ref|ZP_18552420.1| DNA polymerase I [Escherichia coli 88.0221]
gi|425158722|ref|ZP_18557968.1| DNA polymerase I [Escherichia coli PA34]
gi|425195920|ref|ZP_18592674.1| DNA polymerase I [Escherichia coli NE1487]
gi|425208776|ref|ZP_18604557.1| DNA polymerase I [Escherichia coli FRIK2001]
gi|425227306|ref|ZP_18621756.1| DNA polymerase I [Escherichia coli PA49]
gi|425233463|ref|ZP_18627486.1| DNA polymerase I [Escherichia coli PA45]
gi|425239385|ref|ZP_18633089.1| DNA polymerase I [Escherichia coli TT12B]
gi|425245621|ref|ZP_18638911.1| DNA polymerase I [Escherichia coli MA6]
gi|425251815|ref|ZP_18644742.1| DNA polymerase I [Escherichia coli 5905]
gi|425257615|ref|ZP_18650093.1| DNA polymerase I [Escherichia coli CB7326]
gi|425263869|ref|ZP_18655844.1| DNA polymerase I [Escherichia coli EC96038]
gi|425269861|ref|ZP_18661471.1| DNA polymerase I [Escherichia coli 5412]
gi|425297333|ref|ZP_18687440.1| DNA polymerase I [Escherichia coli PA38]
gi|425314032|ref|ZP_18703182.1| DNA polymerase I [Escherichia coli EC1735]
gi|425320014|ref|ZP_18708774.1| DNA polymerase I [Escherichia coli EC1736]
gi|425326154|ref|ZP_18714463.1| DNA polymerase I [Escherichia coli EC1737]
gi|425338641|ref|ZP_18725963.1| DNA polymerase I [Escherichia coli EC1847]
gi|425344935|ref|ZP_18731807.1| DNA polymerase I [Escherichia coli EC1848]
gi|425362996|ref|ZP_18748627.1| DNA polymerase I [Escherichia coli EC1856]
gi|425395181|ref|ZP_18778270.1| DNA polymerase I [Escherichia coli EC1868]
gi|425401236|ref|ZP_18783925.1| DNA polymerase I [Escherichia coli EC1869]
gi|425413689|ref|ZP_18795434.1| DNA polymerase I [Escherichia coli NE098]
gi|425420087|ref|ZP_18801336.1| DNA polymerase I [Escherichia coli FRIK523]
gi|425431301|ref|ZP_18811893.1| DNA polymerase I [Escherichia coli 0.1304]
gi|428949708|ref|ZP_19021963.1| DNA polymerase I [Escherichia coli 88.1467]
gi|428955781|ref|ZP_19027554.1| DNA polymerase I [Escherichia coli 88.1042]
gi|428961911|ref|ZP_19033167.1| DNA polymerase I [Escherichia coli 89.0511]
gi|428968402|ref|ZP_19039089.1| DNA polymerase I [Escherichia coli 90.0091]
gi|428974153|ref|ZP_19044447.1| DNA polymerase I [Escherichia coli 90.0039]
gi|428980634|ref|ZP_19050423.1| DNA polymerase I [Escherichia coli 90.2281]
gi|428986354|ref|ZP_19055726.1| DNA polymerase I [Escherichia coli 93.0055]
gi|428992496|ref|ZP_19061467.1| DNA polymerase I [Escherichia coli 93.0056]
gi|428998393|ref|ZP_19066967.1| DNA polymerase I [Escherichia coli 94.0618]
gi|429010820|ref|ZP_19078199.1| DNA polymerase I [Escherichia coli 95.1288]
gi|429023160|ref|ZP_19089658.1| DNA polymerase I [Escherichia coli 96.0428]
gi|429035348|ref|ZP_19100854.1| DNA polymerase I [Escherichia coli 96.0939]
gi|429047360|ref|ZP_19112055.1| DNA polymerase I [Escherichia coli 96.0107]
gi|429052635|ref|ZP_19117190.1| DNA polymerase I [Escherichia coli 97.0003]
gi|429063710|ref|ZP_19127665.1| DNA polymerase I [Escherichia coli 97.0007]
gi|429075690|ref|ZP_19138931.1| DNA polymerase I [Escherichia coli 99.0678]
gi|429080938|ref|ZP_19144061.1| DNA polymerase I [Escherichia coli 99.0713]
gi|429829119|ref|ZP_19360096.1| DNA polymerase I [Escherichia coli 96.0109]
gi|432419382|ref|ZP_19661970.1| DNA polymerase I [Escherichia coli KTE44]
gi|432578131|ref|ZP_19814575.1| DNA polymerase I [Escherichia coli KTE56]
gi|444927604|ref|ZP_21246856.1| DNA polymerase I [Escherichia coli 09BKT078844]
gi|444933213|ref|ZP_21252208.1| DNA polymerase I [Escherichia coli 99.0814]
gi|444944331|ref|ZP_21262803.1| DNA polymerase I [Escherichia coli 99.0816]
gi|444955420|ref|ZP_21273473.1| DNA polymerase I [Escherichia coli 99.0848]
gi|444960786|ref|ZP_21278596.1| DNA polymerase I [Escherichia coli 99.1753]
gi|444966013|ref|ZP_21283563.1| DNA polymerase I [Escherichia coli 99.1775]
gi|444972048|ref|ZP_21289375.1| DNA polymerase I [Escherichia coli 99.1793]
gi|444977336|ref|ZP_21294400.1| DNA polymerase I [Escherichia coli 99.1805]
gi|444988088|ref|ZP_21304853.1| DNA polymerase I [Escherichia coli PA11]
gi|444993466|ref|ZP_21310095.1| DNA polymerase I [Escherichia coli PA19]
gi|445004189|ref|ZP_21320567.1| DNA polymerase I [Escherichia coli PA2]
gi|445009609|ref|ZP_21325826.1| DNA polymerase I [Escherichia coli PA47]
gi|445014687|ref|ZP_21330780.1| DNA polymerase I [Escherichia coli PA48]
gi|445026018|ref|ZP_21341829.1| DNA polymerase I [Escherichia coli 7.1982]
gi|445031425|ref|ZP_21347079.1| DNA polymerase I [Escherichia coli 99.1781]
gi|445042527|ref|ZP_21357887.1| DNA polymerase I [Escherichia coli PA35]
gi|445056353|ref|ZP_21371253.1| DNA polymerase I [Escherichia coli 99.0670]
gi|452969520|ref|ZP_21967747.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4009]
gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933]
gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli]
gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli]
gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli]
gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli]
gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli]
gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43]
gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407]
gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212]
gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89]
gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905]
gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61]
gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520]
gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044]
gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125]
gi|332345852|gb|AEE59186.1| DNA polymerase I PolA [Escherichia coli UMNK88]
gi|374361301|gb|AEZ43008.1| DNA polymerase I [Escherichia coli O55:H7 str. RM12579]
gi|377888897|gb|EHU53367.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3A]
gi|377888945|gb|EHU53413.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3B]
gi|377901734|gb|EHU66048.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3C]
gi|377905298|gb|EHU69569.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3D]
gi|377916848|gb|EHU80922.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3F]
gi|377926429|gb|EHU90363.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4B]
gi|377937173|gb|EHV00960.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4D]
gi|377937552|gb|EHV01328.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4C]
gi|377943526|gb|EHV07236.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4E]
gi|377953582|gb|EHV17151.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4F]
gi|377956905|gb|EHV20444.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC5A]
gi|377961429|gb|EHV24897.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC5B]
gi|377969137|gb|EHV32517.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC5C]
gi|377980081|gb|EHV43349.1| DNA polymerase I [Escherichia coli DEC5E]
gi|386798543|gb|AFJ31577.1| DNA polymerase I [Escherichia coli Xuzhou21]
gi|390637395|gb|EIN16944.1| DNA polymerase I [Escherichia coli FDA505]
gi|390638117|gb|EIN17634.1| DNA polymerase I [Escherichia coli FDA517]
gi|390656500|gb|EIN34366.1| DNA polymerase I [Escherichia coli 93-001]
gi|390673839|gb|EIN50054.1| DNA polymerase I [Escherichia coli PA3]
gi|390677169|gb|EIN53232.1| DNA polymerase I [Escherichia coli PA5]
gi|390697244|gb|EIN71668.1| DNA polymerase I [Escherichia coli PA15]
gi|390717323|gb|EIN90110.1| DNA polymerase I [Escherichia coli PA24]
gi|390755585|gb|EIO25121.1| DNA polymerase I [Escherichia coli PA40]
gi|390783322|gb|EIO50929.1| DNA polymerase I [Escherichia coli TW06591]
gi|390786697|gb|EIO54203.1| DNA polymerase I [Escherichia coli TW10246]
gi|390792927|gb|EIO60274.1| DNA polymerase I [Escherichia coli TW11039]
gi|390799843|gb|EIO66966.1| DNA polymerase I [Escherichia coli TW09098]
gi|390804256|gb|EIO71232.1| DNA polymerase I [Escherichia coli TW09109]
gi|390813439|gb|EIO80055.1| DNA polymerase I [Escherichia coli TW10119]
gi|390821898|gb|EIO88059.1| DNA polymerase I [Escherichia coli TW09195]
gi|390827420|gb|EIO93187.1| DNA polymerase I [Escherichia coli EC4196]
gi|390840599|gb|EIP04618.1| DNA polymerase I [Escherichia coli TW14313]
gi|390874701|gb|EIP35793.1| DNA polymerase I [Escherichia coli EC4439]
gi|390880139|gb|EIP40846.1| DNA polymerase I [Escherichia coli EC4436]
gi|390890043|gb|EIP49733.1| DNA polymerase I [Escherichia coli EC4437]
gi|390897733|gb|EIP57040.1| DNA polymerase I [Escherichia coli EC1738]
gi|390905743|gb|EIP64673.1| DNA polymerase I [Escherichia coli EC1734]
gi|390915696|gb|EIP74199.1| DNA polymerase I [Escherichia coli EC1863]
gi|408063511|gb|EKG98002.1| DNA polymerase I [Escherichia coli FRIK920]
gi|408064936|gb|EKG99416.1| DNA polymerase I [Escherichia coli PA34]
gi|408074406|gb|EKH08688.1| DNA polymerase I [Escherichia coli PA7]
gi|408105565|gb|EKH37716.1| DNA polymerase I [Escherichia coli NE1487]
gi|408118639|gb|EKH49763.1| DNA polymerase I [Escherichia coli FRIK2001]
gi|408136746|gb|EKH66481.1| DNA polymerase I [Escherichia coli PA49]
gi|408143598|gb|EKH72877.1| DNA polymerase I [Escherichia coli PA45]
gi|408151979|gb|EKH80433.1| DNA polymerase I [Escherichia coli TT12B]
gi|408157040|gb|EKH85213.1| DNA polymerase I [Escherichia coli MA6]
gi|408161157|gb|EKH89131.1| DNA polymerase I [Escherichia coli 5905]
gi|408170212|gb|EKH97430.1| DNA polymerase I [Escherichia coli CB7326]
gi|408177145|gb|EKI03964.1| DNA polymerase I [Escherichia coli EC96038]
gi|408180093|gb|EKI06724.1| DNA polymerase I [Escherichia coli 5412]
gi|408210477|gb|EKI35040.1| DNA polymerase I [Escherichia coli PA38]
gi|408223409|gb|EKI47182.1| DNA polymerase I [Escherichia coli EC1735]
gi|408234774|gb|EKI57772.1| DNA polymerase I [Escherichia coli EC1736]
gi|408237404|gb|EKI60260.1| DNA polymerase I [Escherichia coli EC1737]
gi|408251695|gb|EKI73415.1| DNA polymerase I [Escherichia coli EC1847]
gi|408255982|gb|EKI77390.1| DNA polymerase I [Escherichia coli EC1848]
gi|408274066|gb|EKI94094.1| DNA polymerase I [Escherichia coli EC1856]
gi|408303028|gb|EKJ20496.1| DNA polymerase I [Escherichia coli EC1868]
gi|408315686|gb|EKJ31990.1| DNA polymerase I [Escherichia coli EC1869]
gi|408322980|gb|EKJ38953.1| DNA polymerase I [Escherichia coli NE098]
gi|408333650|gb|EKJ48596.1| DNA polymerase I [Escherichia coli FRIK523]
gi|408341646|gb|EKJ56089.1| DNA polymerase I [Escherichia coli 0.1304]
gi|408544707|gb|EKK22156.1| DNA polymerase I [Escherichia coli 5.2239]
gi|408545062|gb|EKK22502.1| DNA polymerase I [Escherichia coli 3.4870]
gi|408575538|gb|EKK51196.1| DNA polymerase I [Escherichia coli 10.0833]
gi|408578277|gb|EKK53796.1| DNA polymerase I [Escherichia coli 8.2524]
gi|408593137|gb|EKK67465.1| DNA polymerase I [Escherichia coli 88.0221]
gi|408598787|gb|EKK72728.1| DNA polymerase I [Escherichia coli 8.0416]
gi|408608531|gb|EKK81921.1| DNA polymerase I [Escherichia coli 10.0821]
gi|427200910|gb|EKV71317.1| DNA polymerase I [Escherichia coli 89.0511]
gi|427201162|gb|EKV71558.1| DNA polymerase I [Escherichia coli 88.1042]
gi|427204449|gb|EKV74725.1| DNA polymerase I [Escherichia coli 88.1467]
gi|427217426|gb|EKV86488.1| DNA polymerase I [Escherichia coli 90.0091]
gi|427221188|gb|EKV90056.1| DNA polymerase I [Escherichia coli 90.2281]
gi|427224017|gb|EKV92739.1| DNA polymerase I [Escherichia coli 90.0039]
gi|427237702|gb|EKW05227.1| DNA polymerase I [Escherichia coli 93.0056]
gi|427237781|gb|EKW05304.1| DNA polymerase I [Escherichia coli 93.0055]
gi|427242367|gb|EKW09778.1| DNA polymerase I [Escherichia coli 94.0618]
gi|427257717|gb|EKW23834.1| DNA polymerase I [Escherichia coli 95.1288]
gi|427272955|gb|EKW37661.1| DNA polymerase I [Escherichia coli 96.0428]
gi|427280219|gb|EKW44584.1| DNA polymerase I [Escherichia coli 96.0939]
gi|427295744|gb|EKW58830.1| DNA polymerase I [Escherichia coli 96.0107]
gi|427297467|gb|EKW60501.1| DNA polymerase I [Escherichia coli 97.0003]
gi|427310639|gb|EKW72878.1| DNA polymerase I [Escherichia coli 97.0007]
gi|427324778|gb|EKW86238.1| DNA polymerase I [Escherichia coli 99.0678]
gi|427325913|gb|EKW87340.1| DNA polymerase I [Escherichia coli 99.0713]
gi|429250586|gb|EKY35238.1| DNA polymerase I [Escherichia coli 96.0109]
gi|430935615|gb|ELC55915.1| DNA polymerase I [Escherichia coli KTE44]
gi|431111217|gb|ELE15122.1| DNA polymerase I [Escherichia coli KTE56]
gi|444534786|gb|ELV14970.1| DNA polymerase I [Escherichia coli 99.0814]
gi|444536239|gb|ELV16269.1| DNA polymerase I [Escherichia coli 09BKT078844]
gi|444554136|gb|ELV31716.1| DNA polymerase I [Escherichia coli 99.0816]
gi|444559048|gb|ELV36296.1| DNA polymerase I [Escherichia coli 99.0848]
gi|444568750|gb|ELV45403.1| DNA polymerase I [Escherichia coli 99.1753]
gi|444572207|gb|ELV48652.1| DNA polymerase I [Escherichia coli 99.1775]
gi|444575638|gb|ELV51868.1| DNA polymerase I [Escherichia coli 99.1793]
gi|444587764|gb|ELV63173.1| DNA polymerase I [Escherichia coli 99.1805]
gi|444589141|gb|ELV64484.1| DNA polymerase I [Escherichia coli PA11]
gi|444603034|gb|ELV77750.1| DNA polymerase I [Escherichia coli PA19]
gi|444612198|gb|ELV86498.1| DNA polymerase I [Escherichia coli PA2]
gi|444618731|gb|ELV92802.1| DNA polymerase I [Escherichia coli PA47]
gi|444620084|gb|ELV94100.1| DNA polymerase I [Escherichia coli PA48]
gi|444634956|gb|ELW08398.1| DNA polymerase I [Escherichia coli 7.1982]
gi|444636943|gb|ELW10326.1| DNA polymerase I [Escherichia coli 99.1781]
gi|444651580|gb|ELW24381.1| DNA polymerase I [Escherichia coli PA35]
gi|444671741|gb|ELW43525.1| DNA polymerase I [Escherichia coli 99.0670]
Length = 928
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|433634680|ref|YP_007268307.1| Putative DNA polymerase I PolA [Mycobacterium canettii CIPT
140070017]
gi|432166273|emb|CCK63766.1| Putative DNA polymerase I PolA [Mycobacterium canettii CIPT
140070017]
Length = 906
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 81 FRSERYPEYKANRSSTPDEFHGQIDITKEVLGALGITVLAEPGFEADDLIATLATQAENE 140
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++D+ Q++S + +L
Sbjct: 141 GYRVLVVTGDRDALQLVSDDVTVL 164
>gi|432866921|ref|ZP_20089072.1| DNA polymerase I [Escherichia coli KTE146]
gi|431400647|gb|ELG84014.1| DNA polymerase I [Escherichia coli KTE146]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|432855927|ref|ZP_20083551.1| DNA polymerase I [Escherichia coli KTE144]
gi|431396612|gb|ELG80089.1| DNA polymerase I [Escherichia coli KTE144]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|432716490|ref|ZP_19951502.1| DNA polymerase I [Escherichia coli KTE9]
gi|432795121|ref|ZP_20029191.1| DNA polymerase I [Escherichia coli KTE78]
gi|432796632|ref|ZP_20030664.1| DNA polymerase I [Escherichia coli KTE79]
gi|431269612|gb|ELF60918.1| DNA polymerase I [Escherichia coli KTE9]
gi|431335078|gb|ELG22220.1| DNA polymerase I [Escherichia coli KTE78]
gi|431347590|gb|ELG34473.1| DNA polymerase I [Escherichia coli KTE79]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|432452124|ref|ZP_19694378.1| DNA polymerase I [Escherichia coli KTE193]
gi|433035787|ref|ZP_20223472.1| DNA polymerase I [Escherichia coli KTE112]
gi|430977274|gb|ELC94125.1| DNA polymerase I [Escherichia coli KTE193]
gi|431545537|gb|ELI20188.1| DNA polymerase I [Escherichia coli KTE112]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|432367332|ref|ZP_19610443.1| DNA polymerase I [Escherichia coli KTE10]
gi|430890567|gb|ELC13196.1| DNA polymerase I [Escherichia coli KTE10]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|425214533|ref|ZP_18609919.1| DNA polymerase I [Escherichia coli PA4]
gi|429004782|ref|ZP_19072824.1| DNA polymerase I [Escherichia coli 95.0183]
gi|429017283|ref|ZP_19084142.1| DNA polymerase I [Escherichia coli 95.0943]
gi|429029206|ref|ZP_19095160.1| DNA polymerase I [Escherichia coli 96.0427]
gi|429069914|ref|ZP_19133334.1| DNA polymerase I [Escherichia coli 99.0672]
gi|408124908|gb|EKH55551.1| DNA polymerase I [Escherichia coli PA4]
gi|427255635|gb|EKW21884.1| DNA polymerase I [Escherichia coli 95.0183]
gi|427257250|gb|EKW23381.1| DNA polymerase I [Escherichia coli 95.0943]
gi|427274650|gb|EKW39297.1| DNA polymerase I [Escherichia coli 96.0427]
gi|427315289|gb|EKW77293.1| DNA polymerase I [Escherichia coli 99.0672]
Length = 890
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 31 FRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKA 90
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 91 GRPVLISTGDKDMAQLVTPNITLI 114
>gi|422835409|ref|ZP_16883464.1| DNA polymerase I [Escherichia coli E101]
gi|371612389|gb|EHO00900.1| DNA polymerase I [Escherichia coli E101]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|422976191|ref|ZP_16977027.1| DNA polymerase I [Escherichia coli TA124]
gi|371594184|gb|EHN83055.1| DNA polymerase I [Escherichia coli TA124]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|366158352|ref|ZP_09458214.1| DNA polymerase I [Escherichia sp. TW09308]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRVQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTSNITLI 152
>gi|417631342|ref|ZP_12281572.1| DNA polymerase I [Escherichia coli STEC_MHI813]
gi|345368991|gb|EGX00980.1| DNA polymerase I [Escherichia coli STEC_MHI813]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|338534293|ref|YP_004667627.1| DNA polymerase I [Myxococcus fulvus HW-1]
gi|337260389|gb|AEI66549.1| DNA polymerase I [Myxococcus fulvus HW-1]
Length = 908
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 48/71 (67%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R + P+YK NR P+ +V ++ ++A+++ V+EV G EADDVIG LAV++ +G
Sbjct: 74 RQKIDPTYKANREGPPEDLVPQFALIRRVVEAINVPVLEVAGWEADDVIGTLAVKAKAEG 133
Query: 64 FKIQVVSPNKD 74
F +QVV+ +KD
Sbjct: 134 FCVQVVTGDKD 144
>gi|416298142|ref|ZP_11651859.1| DNA polymerase I [Shigella flexneri CDC 796-83]
gi|420327809|ref|ZP_14829548.1| DNA polymerase I [Shigella flexneri CCH060]
gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83]
gi|391246194|gb|EIQ05456.1| DNA polymerase I [Shigella flexneri CCH060]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W]
gi|378715226|ref|YP_005280119.1| DNA polymerase I [Escherichia coli KO11FL]
gi|386611232|ref|YP_006126718.1| DNA polymerase I [Escherichia coli W]
gi|386699364|ref|YP_006163201.1| DNA polymerase I [Escherichia coli KO11FL]
gi|386711766|ref|YP_006175487.1| DNA polymerase I [Escherichia coli W]
gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W]
gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W]
gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11FL]
gi|383390891|gb|AFH15849.1| DNA polymerase I [Escherichia coli KO11FL]
gi|383407458|gb|AFH13701.1| DNA polymerase I [Escherichia coli W]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
gi|419921133|ref|ZP_14439228.1| DNA polymerase I [Escherichia coli KD2]
gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
gi|388383196|gb|EIL44983.1| DNA polymerase I [Escherichia coli KD2]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|387609665|ref|YP_006098521.1| DNA polymerase I [Escherichia coli 042]
gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39]
gi|386626765|ref|YP_006146493.1| fused DNA polymerase I 5'-3' polymerase/3'-5' exonuclease/5'-3'
exonuclease [Escherichia coli O7:K1 str. CE10]
gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Escherichia coli IAI39]
gi|349740501|gb|AEQ15207.1| fused DNA polymerase I 5'-3' polymerase/3'-5' exonuclease/5'-3'
exonuclease [Escherichia coli O7:K1 str. CE10]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469]
gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Escherichia fergusonii ATCC 35469]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5]
gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227]
gi|420355446|ref|ZP_14856510.1| DNA polymerase I [Shigella boydii 4444-74]
gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227]
gi|391272350|gb|EIQ31204.1| DNA polymerase I [Shigella boydii 4444-74]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|418259220|ref|ZP_12882222.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Shigella flexneri 6603-63]
gi|397894872|gb|EJL11312.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Shigella flexneri 6603-63]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
gi|423240816|ref|ZP_17221930.1| DNA polymerase I [Bacteroides dorei CL03T12C01]
gi|212664838|gb|EEB25410.1| DNA-directed DNA polymerase [Bacteroides dorei DSM 17855]
gi|392643778|gb|EIY37527.1| DNA polymerase I [Bacteroides dorei CL03T12C01]
Length = 971
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK R TP+ + + +K I+A I ++E+PG EADDVIG LA +
Sbjct: 66 FRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEIPGYEADDVIGTLATEAGKR 125
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G +++P+KD Q++ ++ + R P+ GFE++
Sbjct: 126 GITTYMMTPDKDYGQLVGGNVFMYR--PKHTGGFEVM 160
>gi|449019992|dbj|BAM83394.1| bacterial DNA polymerase I [Cyanidioschyzon merolae strain 10D]
Length = 1451
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FR L+P YK NR PD + L Y+K +I + ++ E+ EADDVIG LA +
Sbjct: 363 SFRQLLFPKYKANRERMPDGVRDALPYVKRAIHQLGLQSFELESFEADDVIGTLAALANH 422
Query: 62 DGFKIQVVSPNKD 74
+G+++ +VS +KD
Sbjct: 423 NGYRVVIVSNDKD 435
>gi|432487613|ref|ZP_19729519.1| DNA polymerase I [Escherichia coli KTE212]
gi|433175750|ref|ZP_20360251.1| DNA polymerase I [Escherichia coli KTE232]
gi|431013445|gb|ELD27178.1| DNA polymerase I [Escherichia coli KTE212]
gi|431686990|gb|ELJ52543.1| DNA polymerase I [Escherichia coli KTE232]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197]
gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617]
gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197]
gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 929
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R ++ YK NR TP+ + + Y+ +KAM I +IE G EADD+IG LA ++ G
Sbjct: 67 RLAIFDQYKANREETPEAIRFAIPYIHQILKAMQIPIIEKEGYEADDIIGTLAKQAEKQG 126
Query: 64 FKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+ + +V+P+KD Q++S ++ + + A G
Sbjct: 127 YTVYMVTPDKDYGQLVSPNIFMYKPARGG 155
>gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|416801966|ref|ZP_11885918.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687]
gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D]
gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D]
Length = 937
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP+YK +R P PD + ++ + +++A+ ++ + GVEADDVIG LA R+ +
Sbjct: 68 FRDDLYPAYKEHRAPMPDDLRAQIEPIHEAVRALGWPILVIEGVEADDVIGTLAERAARE 127
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q+++ + L+
Sbjct: 128 GVRTIVSTGDKDLAQLVNDHVTLV 151
>gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69]
gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75]
gi|417758306|ref|ZP_12406365.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC2B]
gi|418999442|ref|ZP_13547016.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC1A]
gi|419004684|ref|ZP_13552190.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC1B]
gi|419010365|ref|ZP_13557771.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC1C]
gi|419016069|ref|ZP_13563401.1| DNA polymerase I [Escherichia coli DEC1D]
gi|419020994|ref|ZP_13568289.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC1E]
gi|419026447|ref|ZP_13573657.1| DNA polymerase I [Escherichia coli DEC2A]
gi|419031598|ref|ZP_13578735.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC2C]
gi|419037245|ref|ZP_13584314.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC2D]
gi|419042293|ref|ZP_13589306.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC2E]
gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5'
exonuclease [Escherichia coli O127:H6 str. E2348/69]
gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75]
gi|377838663|gb|EHU03773.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC1C]
gi|377838814|gb|EHU03923.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC1A]
gi|377841511|gb|EHU06576.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC1B]
gi|377852587|gb|EHU17503.1| DNA polymerase I [Escherichia coli DEC1D]
gi|377855678|gb|EHU20543.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC1E]
gi|377857526|gb|EHU22375.1| DNA polymerase I [Escherichia coli DEC2A]
gi|377870015|gb|EHU34709.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC2B]
gi|377871995|gb|EHU36649.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC2C]
gi|377873573|gb|EHU38206.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC2D]
gi|377885554|gb|EHU50048.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC2E]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015]
gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015]
Length = 900
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ +Y YK NRPP PD + ++ + I+AM + ++ V GVEADDVIG LA ++ D
Sbjct: 52 FRNEIYAEYKANRPPMPDDLRVQIEPIHEIIRAMGLPLLIVDGVEADDVIGTLAKQATDS 111
Query: 63 GFKIQVVSPNKD-SQILS 79
G V + +KD +Q++S
Sbjct: 112 GQDALVSTGDKDMAQLVS 129
>gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
Length = 930
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK NRPP P+ + ++ L IKAM + VI GVEADDVIG LA + +
Sbjct: 69 FRDDIYKEYKANRPPMPEELRSQIEPLHTIIKAMGLPVIVESGVEADDVIGTLAKHATEK 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + +KD +Q+++ + L+
Sbjct: 129 GIDTLISTGDKDMAQLVNKHVTLI 152
>gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185]
gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627]
gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|432817650|ref|ZP_20051399.1| DNA polymerase I [Escherichia coli KTE115]
gi|431359693|gb|ELG46319.1| DNA polymerase I [Escherichia coli KTE115]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|432619180|ref|ZP_19855276.1| DNA polymerase I [Escherichia coli KTE75]
gi|431150112|gb|ELE51169.1| DNA polymerase I [Escherichia coli KTE75]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|432374190|ref|ZP_19617221.1| DNA polymerase I [Escherichia coli KTE11]
gi|430893612|gb|ELC15936.1| DNA polymerase I [Escherichia coli KTE11]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRVQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTSNITLI 152
>gi|429506198|ref|YP_007187382.1| DNA polymerase I [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|429487788|gb|AFZ91712.1| DNA polymerase I [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 879
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH+ + YK R TP + + + +++ + A I E+P EADD+IG LAV + +
Sbjct: 67 FRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYKISRYELPEYEADDIIGTLAVSAEKE 126
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF+++VVS +KD L+ + I +G
Sbjct: 127 GFEVKVVSGDKDLTQLATGKTTVAITRKG 155
>gi|427708986|ref|YP_007051363.1| DNA polymerase I [Nostoc sp. PCC 7107]
gi|427361491|gb|AFY44213.1| DNA polymerase I [Nostoc sp. PCC 7107]
Length = 972
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 48/73 (65%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH + +YK +RP TP+ V L+ L+ + +++K+ PG EADDV+G L+ ++
Sbjct: 79 TFRHEVDDTYKADRPGTPEDFVPDLKNLQELLTGLNLKIFTAPGYEADDVLGTLSQKATA 138
Query: 62 DGFKIQVVSPNKD 74
G+K+++++ ++D
Sbjct: 139 AGYKVKILTGDRD 151
>gi|419166823|ref|ZP_13711269.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC6E]
gi|378005954|gb|EHV68945.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC6E]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|422764510|ref|ZP_16818259.1| DNA polymerase I [Escherichia coli E1167]
gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42]
gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42]
Length = 879
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH+ + YK R TP + + + +++ + A I E+P EADD+IG LAV + +
Sbjct: 67 FRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYKISRYELPEYEADDIIGTLAVSAEKE 126
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF+++VVS +KD L+ + I +G
Sbjct: 127 GFEVKVVSGDKDLTQLATGKTTVAITRKG 155
>gi|452856558|ref|YP_007498241.1| DNA polymerase I [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|452080818|emb|CCP22583.1| DNA polymerase I [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 879
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH+ + YK R TP + + + +++ + A I E+P EADD+IG LAV + +
Sbjct: 67 FRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYKISRYELPEYEADDIIGTLAVSAEKE 126
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF+++VVS +KD L+ + I +G
Sbjct: 127 GFEVKVVSGDKDLTQLATGKTTVAITRKG 155
>gi|444353937|ref|YP_007390081.1| DNA polymerase I (EC 2.7.7.7) [Enterobacter aerogenes EA1509E]
gi|443904767|emb|CCG32541.1| DNA polymerase I (EC 2.7.7.7) [Enterobacter aerogenes EA1509E]
Length = 775
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ VPGVEADDVIG LA +
Sbjct: 30 TFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREAEK 89
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 90 VGRPVLISTGDKDMAQLVTPGITLI 114
>gi|440718089|ref|ZP_20898553.1| DNA polymerase I [Rhodopirellula baltica SWK14]
gi|436436631|gb|ELP30351.1| DNA polymerase I [Rhodopirellula baltica SWK14]
Length = 1071
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FR+ LYP YK NR PD + Q + ++ +I AM I +IE G EADD++ +A +
Sbjct: 232 VTFRNELYPEYKANRDSMPDELRQQIPLIRQAIDAMGIGIIEQSGFEADDLLATVAAKVE 291
Query: 61 DDGFKIQVVSPNKDSQIL 78
+ G + VV+ +KD + L
Sbjct: 292 EAGGRCLVVTSDKDCRQL 309
>gi|420338359|ref|ZP_14839915.1| exonuclease xni [Shigella flexneri K-315]
gi|391258473|gb|EIQ17572.1| exonuclease xni [Shigella flexneri K-315]
Length = 179
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 24 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 83
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 84 AGRPVLISTGDKDMAQLVTPNITLI 108
>gi|407466864|ref|YP_006786694.1| DNA polymerase I [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407484410|ref|YP_006781560.1| DNA polymerase I [Escherichia coli O104:H4 str. 2011C-3493]
gi|410484956|ref|YP_006772502.1| DNA polymerase I [Escherichia coli O104:H4 str. 2009EL-2050]
gi|417807549|ref|ZP_12454476.1| DNA polymerase I [Escherichia coli O104:H4 str. LB226692]
gi|417835288|ref|ZP_12481727.1| DNA polymerase I [Escherichia coli O104:H4 str. 01-09591]
gi|417867766|ref|ZP_12512800.1| polA [Escherichia coli O104:H4 str. C227-11]
gi|422990124|ref|ZP_16980896.1| DNA polymerase I [Escherichia coli O104:H4 str. C227-11]
gi|422997021|ref|ZP_16987783.1| DNA polymerase I [Escherichia coli O104:H4 str. C236-11]
gi|423002117|ref|ZP_16992868.1| DNA polymerase I [Escherichia coli O104:H4 str. 09-7901]
gi|423005772|ref|ZP_16996517.1| DNA polymerase I [Escherichia coli O104:H4 str. 04-8351]
gi|423012333|ref|ZP_17003065.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-3677]
gi|423021564|ref|ZP_17012269.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4404]
gi|423026721|ref|ZP_17017415.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4522]
gi|423032549|ref|ZP_17023235.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4623]
gi|423035424|ref|ZP_17026100.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423040545|ref|ZP_17031213.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423047230|ref|ZP_17037888.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423055768|ref|ZP_17044574.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423057772|ref|ZP_17046570.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C5]
gi|429721605|ref|ZP_19256518.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-9450]
gi|429773681|ref|ZP_19305693.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02030]
gi|429778865|ref|ZP_19310829.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02033-1]
gi|429782700|ref|ZP_19314623.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02092]
gi|429788093|ref|ZP_19319978.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02093]
gi|429794532|ref|ZP_19326371.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02281]
gi|429800492|ref|ZP_19332279.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02318]
gi|429804104|ref|ZP_19335859.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02913]
gi|429808752|ref|ZP_19340466.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-03439]
gi|429814694|ref|ZP_19346362.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-04080]
gi|429819654|ref|ZP_19351282.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-03943]
gi|429905973|ref|ZP_19371947.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-9990]
gi|429910107|ref|ZP_19376067.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-9941]
gi|429916006|ref|ZP_19381950.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-4984]
gi|429921055|ref|ZP_19386980.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-5604]
gi|429926861|ref|ZP_19392771.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-4986]
gi|429930792|ref|ZP_19396691.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-4987]
gi|429937334|ref|ZP_19403219.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-4988]
gi|429943013|ref|ZP_19408884.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-5603]
gi|429945693|ref|ZP_19411552.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-6006]
gi|429953257|ref|ZP_19419100.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec12-0465]
gi|429956601|ref|ZP_19422431.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec12-0466]
gi|340731868|gb|EGR61007.1| DNA polymerase I [Escherichia coli O104:H4 str. 01-09591]
gi|340737807|gb|EGR72061.1| DNA polymerase I [Escherichia coli O104:H4 str. LB226692]
gi|341921055|gb|EGT70658.1| polA [Escherichia coli O104:H4 str. C227-11]
gi|354856874|gb|EHF17331.1| DNA polymerase I [Escherichia coli O104:H4 str. C236-11]
gi|354861191|gb|EHF21631.1| DNA polymerase I [Escherichia coli O104:H4 str. C227-11]
gi|354861483|gb|EHF21922.1| DNA polymerase I [Escherichia coli O104:H4 str. 04-8351]
gi|354869897|gb|EHF30303.1| DNA polymerase I [Escherichia coli O104:H4 str. 09-7901]
gi|354875826|gb|EHF36189.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-3677]
gi|354885105|gb|EHF45413.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4404]
gi|354888414|gb|EHF48671.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4522]
gi|354891932|gb|EHF52148.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4623]
gi|354903965|gb|EHF64061.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354907492|gb|EHF67552.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354909499|gb|EHF69530.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354911776|gb|EHF71779.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C4]
gi|354919965|gb|EHF79902.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C5]
gi|406780118|gb|AFS59542.1| DNA polymerase I [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407056707|gb|AFS76758.1| DNA polymerase I [Escherichia coli O104:H4 str. 2011C-3493]
gi|407062899|gb|AFS83946.1| DNA polymerase I [Escherichia coli O104:H4 str. 2009EL-2071]
gi|429354859|gb|EKY91554.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02030]
gi|429355601|gb|EKY92288.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02033-1]
gi|429356432|gb|EKY93108.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02092]
gi|429370601|gb|EKZ07165.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02093]
gi|429371061|gb|EKZ07621.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02281]
gi|429375284|gb|EKZ11821.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02318]
gi|429386722|gb|EKZ23168.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02913]
gi|429389099|gb|EKZ25521.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-03439]
gi|429390208|gb|EKZ26623.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-03943]
gi|429399768|gb|EKZ36087.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-04080]
gi|429401695|gb|EKZ37992.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-9990]
gi|429404298|gb|EKZ40575.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-9450]
gi|429412555|gb|EKZ48748.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-4984]
gi|429415275|gb|EKZ51441.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-4986]
gi|429422791|gb|EKZ58902.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-4987]
gi|429427372|gb|EKZ63456.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-4988]
gi|429431632|gb|EKZ67678.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-5603]
gi|429437903|gb|EKZ73898.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-5604]
gi|429442252|gb|EKZ78210.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec12-0465]
gi|429447423|gb|EKZ83342.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-6006]
gi|429454111|gb|EKZ89976.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec12-0466]
gi|429458402|gb|EKZ94227.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-9941]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|417704317|ref|ZP_12353416.1| DNA polymerase I [Shigella flexneri K-218]
gi|417740406|ref|ZP_12388975.1| DNA polymerase I [Shigella flexneri 4343-70]
gi|420376423|ref|ZP_14876171.1| DNA polymerase I [Shigella flexneri 1235-66]
gi|332751661|gb|EGJ82060.1| DNA polymerase I [Shigella flexneri 4343-70]
gi|332998620|gb|EGK18217.1| DNA polymerase I [Shigella flexneri K-218]
gi|391303794|gb|EIQ61624.1| DNA polymerase I [Shigella flexneri 1235-66]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
exonuclease [Serratia symbiotica str. Tucson]
gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
exonuclease [Serratia symbiotica str. Tucson]
Length = 933
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ PGVEADDVIG LA+ +
Sbjct: 68 TFRDELFAEYKSHRPPMPDDLRTQIEPLHKMVKAMGLPLLVTPGVEADDVIGTLALEAEM 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGHPVLISTGDKDMAQLVTPNVTLI 152
>gi|428774052|ref|YP_007165840.1| DNA polymerase I [Cyanobacterium stanieri PCC 7202]
gi|428688331|gb|AFZ48191.1| DNA polymerase I [Cyanobacterium stanieri PCC 7202]
Length = 944
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 48/72 (66%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRHT +YK +R TPD ++ L L+ ++A++I ++ G EADDV+G LA+++ +
Sbjct: 70 FRHTADANYKGDRAETPDDFIEDLYNLQQLLQALNISIVTASGYEADDVLGTLALQAAQE 129
Query: 63 GFKIQVVSPNKD 74
+ +++VS ++D
Sbjct: 130 NYTVKIVSGDRD 141
>gi|420333477|ref|ZP_14835115.1| DNA polymerase I [Shigella flexneri K-1770]
gi|391245445|gb|EIQ04713.1| DNA polymerase I [Shigella flexneri K-1770]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|386707120|ref|YP_006170967.1| DNA polymerase I [Escherichia coli P12b]
gi|383105288|gb|AFG42797.1| DNA polymerase I [Escherichia coli P12b]
Length = 890
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 31 FRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKA 90
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 91 GRPVLISTGDKDMAQLVTPNITLI 114
>gi|213022529|ref|ZP_03336976.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. 404ty]
Length = 478
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 VGRPVLISTGDKDMAQLVTQNITLI 152
>gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
Length = 918
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ +Y YK RPP PD + ++ L IKA+ + ++ + GVEADDVIG +A ++ +
Sbjct: 69 FRNDMYSEYKAQRPPMPDDLRTQIEPLHRIIKALGLPLVSISGVEADDVIGTIATQASKE 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q++ ++ L+
Sbjct: 129 GRAVLISTGDKDMAQLVDENVTLI 152
>gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301]
gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5
exonuclease [Shigella flexneri 2a str. 301]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
gi|384545465|ref|YP_005729529.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease
[Shigella flexneri 2002017]
gi|417725276|ref|ZP_12374065.1| DNA polymerase I [Shigella flexneri K-304]
gi|417730558|ref|ZP_12379243.1| DNA polymerase I [Shigella flexneri K-671]
gi|417735536|ref|ZP_12384177.1| DNA polymerase I [Shigella flexneri 2747-71]
gi|420343956|ref|ZP_14845419.1| DNA polymerase I [Shigella flexneri K-404]
gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease
[Shigella flexneri 2002017]
gi|332751499|gb|EGJ81900.1| DNA polymerase I [Shigella flexneri K-671]
gi|332753203|gb|EGJ83586.1| DNA polymerase I [Shigella flexneri 2747-71]
gi|333013930|gb|EGK33292.1| DNA polymerase I [Shigella flexneri K-304]
gi|391263277|gb|EIQ22287.1| DNA polymerase I [Shigella flexneri K-404]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|385234002|ref|YP_005795344.1| DNA polymerase I [Ketogulonicigenium vulgare WSH-001]
gi|343462913|gb|AEM41348.1| DNA polymerase I [Ketogulonicigenium vulgare WSH-001]
Length = 945
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FR+ +YP YK +RPP P+ + +A+ A +I E+ G EADD+I LA +
Sbjct: 78 ITFRNDIYPEYKAHRPPLPEDLRPQFPLTRAATAAFNIAYKEIEGFEADDIIATLAREAA 137
Query: 61 DDGFKIQVVSPNKD-SQILSHSLCLL 85
+ G ++ V+S +KD Q++ ++C+
Sbjct: 138 EAGGRVTVISSDKDLMQLVGPAVCMF 163
>gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168]
gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|213580148|ref|ZP_03361974.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-0664]
Length = 281
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 VGRPVLISTGDKDMAQLVTQNITLI 152
>gi|253699464|ref|YP_003020653.1| 5'-3' exonuclease [Geobacter sp. M21]
gi|251774314|gb|ACT16895.1| 5'-3' exonuclease [Geobacter sp. M21]
Length = 474
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +YP YK R P+ +V L Y++ ++A++I ++E EADDVI LA R
Sbjct: 67 TFRREIYPEYKAQRDAAPEDLVSQLPYIRKILQALNIPILETSRFEADDVIATLATRFAA 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G + VV+ +KD QI++ + LL
Sbjct: 127 EGTDVTVVTGDKDLLQIVTGRISLL 151
>gi|340001439|ref|YP_004732323.1| DNA polymerase I [Salmonella bongori NCTC 12419]
gi|339514801|emb|CCC32571.1| DNA polymerase I [Salmonella bongori NCTC 12419]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299]
gi|450195819|ref|ZP_21892662.1| DNA polymerase I [Escherichia coli SEPT362]
gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299]
gi|449315924|gb|EMD06050.1| DNA polymerase I [Escherichia coli SEPT362]
Length = 928
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|32477714|ref|NP_870708.1| DNA polymerase I [Rhodopirellula baltica SH 1]
gi|32448268|emb|CAD77785.1| DNA polymerase I [Rhodopirellula baltica SH 1]
Length = 1027
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FR+ LYP YK NR PD + Q + ++ +I AM I +IE G EADD++ +A +
Sbjct: 188 VTFRNELYPEYKANRDSMPDELRQQIPLIRQAIDAMGIGIIEQSGFEADDLLATVAAKVE 247
Query: 61 DDGFKIQVVSPNKDSQIL 78
+ G + VV+ +KD + L
Sbjct: 248 EAGGRCLVVTSDKDCRQL 265
>gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1]
Length = 927
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP YK +R P PD + ++ + I+ + + V+ VP VEADDVIG LA +
Sbjct: 80 FREALYPQYKAHRAPMPDDLRVQIEPIDEVIRLLGLPVLRVPDVEADDVIGTLAKTAAAQ 139
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G+++ + S +KD SQ++ + ++
Sbjct: 140 GWRVVISSGDKDLSQLVDERITII 163
>gi|291550064|emb|CBL26326.1| DNA polymerase I [Ruminococcus torques L2-14]
Length = 871
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH ++ YK R P + + Q + +K ++AM I+VIE G+EADD++G L+ R +
Sbjct: 65 FRHEMFADYKGTRKPMAEELRQQVPVIKDVLRAMHIEVIEKAGLEADDLLGTLSHRCEEK 124
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRI 87
G + ++S ++D+ L+ +RI
Sbjct: 125 GMDVSIISGDRDTLQLATEHIKIRI 149
>gi|429058191|ref|ZP_19122432.1| DNA polymerase I, partial [Escherichia coli 97.1742]
gi|427307730|gb|EKW70162.1| DNA polymerase I, partial [Escherichia coli 97.1742]
Length = 268
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>gi|415709792|ref|ZP_11463371.1| DNA polymerase I [Gardnerella vaginalis 6420B]
gi|388055794|gb|EIK78679.1| DNA polymerase I [Gardnerella vaginalis 6420B]
Length = 1025
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+T+ P YK R P ++ L ++ +KA+ I IE PG E DDVIG LA +
Sbjct: 82 FRNTMLPQYKGTRDAAPQELLSQLPIIQQMLKALGITYIEKPGYEGDDVIGTLATMGANA 141
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G++ V+S ++D+ Q++ ++ +L
Sbjct: 142 GYRTLVLSGDRDAFQLIDDNITVL 165
>gi|350273909|ref|YP_004885222.1| DNA polymerase I [Rickettsia japonica YH]
gi|348593122|dbj|BAK97083.1| DNA polymerase I [Rickettsia japonica YH]
Length = 875
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRPP P+ ++ L ++ ++ ++E G EADD+I A ++
Sbjct: 66 NFRHQIYPDYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADDIIATFATKTAA 125
Query: 62 DGFKIQVVSPNKD 74
G + ++S +KD
Sbjct: 126 LGAHVVIISSDKD 138
>gi|336247956|ref|YP_004591666.1| DNA polymerase I [Enterobacter aerogenes KCTC 2190]
gi|334734012|gb|AEG96387.1| DNA polymerase I [Enterobacter aerogenes KCTC 2190]
Length = 926
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ VPGVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 VGRPVLISTGDKDMAQLVTPGITLI 152
>gi|378765067|ref|YP_005193526.1| DNA polymerase I [Pantoea ananatis LMG 5342]
gi|386017735|ref|YP_005936034.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
gi|386077330|ref|YP_005990855.1| DNA polymerase I PolA [Pantoea ananatis PA13]
gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
gi|354986511|gb|AER30635.1| DNA polymerase I PolA [Pantoea ananatis PA13]
gi|365184539|emb|CCF07489.1| DNA polymerase I [Pantoea ananatis LMG 5342]
Length = 928
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L ++AM + ++ V GVEADDVIG LA+ +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRSQIEPLHEMVRAMGLPLLAVSGVEADDVIGTLALEAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 KGHAVLISTGDKDMAQLVTPGITLI 152
>gi|419072205|ref|ZP_13617801.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3E]
gi|419083183|ref|ZP_13628623.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4A]
gi|419134157|ref|ZP_13678976.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC5D]
gi|425112742|ref|ZP_18514646.1| DNA polymerase I [Escherichia coli 6.0172]
gi|425128672|ref|ZP_18529825.1| DNA polymerase I [Escherichia coli 8.0586]
gi|425146707|ref|ZP_18546683.1| DNA polymerase I [Escherichia coli 10.0869]
gi|429041456|ref|ZP_19106527.1| DNA polymerase I [Escherichia coli 96.0932]
gi|429835584|ref|ZP_19365808.1| DNA polymerase I [Escherichia coli 97.0010]
gi|444938760|ref|ZP_21257479.1| DNA polymerase I [Escherichia coli 99.0815]
gi|444949746|ref|ZP_21268026.1| DNA polymerase I [Escherichia coli 99.0839]
gi|444982718|ref|ZP_21299612.1| DNA polymerase I [Escherichia coli ATCC 700728]
gi|444998644|ref|ZP_21315132.1| DNA polymerase I [Escherichia coli PA13]
gi|445020608|ref|ZP_21336561.1| DNA polymerase I [Escherichia coli PA8]
gi|445036896|ref|ZP_21352410.1| DNA polymerase I [Escherichia coli 99.1762]
gi|445047731|ref|ZP_21362967.1| DNA polymerase I [Escherichia coli 3.4880]
gi|377906185|gb|EHU70434.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3E]
gi|377922815|gb|EHU86790.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4A]
gi|377969840|gb|EHV33214.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC5D]
gi|408545643|gb|EKK23069.1| DNA polymerase I [Escherichia coli 6.0172]
gi|408563281|gb|EKK39418.1| DNA polymerase I [Escherichia coli 8.0586]
gi|408588188|gb|EKK62776.1| DNA polymerase I [Escherichia coli 10.0869]
gi|427288784|gb|EKW52385.1| DNA polymerase I [Escherichia coli 96.0932]
gi|429251051|gb|EKY35679.1| DNA polymerase I [Escherichia coli 97.0010]
gi|444545040|gb|ELV23997.1| DNA polymerase I [Escherichia coli 99.0815]
gi|444554468|gb|ELV32031.1| DNA polymerase I [Escherichia coli 99.0839]
gi|444588930|gb|ELV64287.1| DNA polymerase I [Escherichia coli ATCC 700728]
gi|444602936|gb|ELV77653.1| DNA polymerase I [Escherichia coli PA13]
gi|444626411|gb|ELW00205.1| DNA polymerase I [Escherichia coli PA8]
gi|444641769|gb|ELW14987.1| DNA polymerase I [Escherichia coli 99.1762]
gi|444656833|gb|ELW29341.1| DNA polymerase I [Escherichia coli 3.4880]
Length = 884
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 25 FRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKA 84
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 85 GRPVLISTGDKDMAQLVTPNITLI 108
>gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
Length = 905
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP YK++RPP P+ + ++ + +++A+ V+ + GVEADDVIG LA R+ +
Sbjct: 65 FRDDLYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGTLAKRAAEH 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
V + +KD +Q+++ + L+
Sbjct: 125 DVHTIVSTGDKDLAQLVNSHVTLV 148
>gi|418517767|ref|ZP_13083925.1| DNA polymerase I [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|410705480|gb|EKQ63952.1| DNA polymerase I [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 934
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRP PD + +Q + + A+ I ++ + GVEADDVIG LA++ D
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLAVTISTGDKD 134
>gi|419959557|ref|ZP_14475609.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae GS1]
gi|388605455|gb|EIM34673.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae GS1]
Length = 930
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPGITLI 152
>gi|417265202|ref|ZP_12052581.1| DNA-directed DNA polymerase [Escherichia coli 2.3916]
gi|417269615|ref|ZP_12056975.1| DNA-directed DNA polymerase [Escherichia coli 3.3884]
gi|418269932|ref|ZP_12888109.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Shigella sonnei str. Moseley]
gi|420365930|ref|ZP_14866787.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Shigella sonnei 4822-66]
gi|425117487|ref|ZP_18519257.1| DNA polymerase I [Escherichia coli 8.0566]
gi|386221384|gb|EII43828.1| DNA-directed DNA polymerase [Escherichia coli 2.3916]
gi|386228420|gb|EII55776.1| DNA-directed DNA polymerase [Escherichia coli 3.3884]
gi|391291565|gb|EIQ49957.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Shigella sonnei 4822-66]
gi|397894964|gb|EJL11400.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Shigella sonnei str. Moseley]
gi|408562761|gb|EKK38913.1| DNA polymerase I [Escherichia coli 8.0566]
Length = 884
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 25 FRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKA 84
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 85 GRPVLISTGDKDMAQLVTPNITLI 108
>gi|419161731|ref|ZP_13706219.1| DNA polymerase I [Escherichia coli DEC6D]
gi|378003444|gb|EHV66486.1| DNA polymerase I [Escherichia coli DEC6D]
Length = 884
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 25 FRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKA 84
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 85 GRPVLISTGDKDMAQLVTPNITLI 108
>gi|416778887|ref|ZP_11876137.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101]
gi|320639201|gb|EFX08828.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101]
Length = 916
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 57 FRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKA 116
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 117 GRPVLISTGDKDMAQLVTPNITLI 140
>gi|416279847|ref|ZP_11644992.1| DNA polymerase I [Shigella boydii ATCC 9905]
gi|320182134|gb|EFW57037.1| DNA polymerase I [Shigella boydii ATCC 9905]
Length = 884
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 25 FRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKA 84
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 85 GRPVLISTGDKDMAQLVTPNITLI 108
>gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 934
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRP PD + +Q + + A+ I ++ + GVEADDVIG LA++ D
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLAVTISTGDKD 134
>gi|254417961|ref|ZP_05031685.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
gi|196184138|gb|EDX79114.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
Length = 971
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+TLY YK +RPP P+ +V ++ + A + +E+PG EADD+I A ++ D
Sbjct: 91 FRNTLYDQYKAHRPPAPEDLVPQFPLVREATAAFGVHCVELPGYEADDLIATYACKARDA 150
Query: 63 GFKIQVVSPNKD 74
G + +VS +KD
Sbjct: 151 GGEAVIVSSDKD 162
>gi|145220238|ref|YP_001130947.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265]
gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265]
Length = 940
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH LY YK NR P+ M+ ++ L ++A+ I +++ PG EADD+IG A R +D
Sbjct: 91 FRHDLYDQYKANRQAPPEDMLAQIEPLFKLLEALGIPILKTPGYEADDLIGS-AARLFED 149
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRGFEL 94
I +V+P+KD +Q++ + +LR EL
Sbjct: 150 QCNIFIVTPDKDLAQLVHGGVSMLRPTKNDSEL 182
>gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 934
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRP PD + +Q + + A+ I ++ + GVEADDVIG LA++ D
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLAVTISTGDKD 134
>gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
NRL30031/H210]
gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
NRL30031/H210]
Length = 937
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++ YK RPP PD + + L ++ M V+ +P VEADDVIG LA + +
Sbjct: 67 NFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMAGE 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + V + +KD +Q+++ + L+
Sbjct: 127 AGWNVVVSTGDKDMAQLVNERVTLV 151
>gi|219681782|ref|YP_002468168.1| DNA polymerase I [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
gi|219682337|ref|YP_002468721.1| DNA polymerase I [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
pisum)]
gi|257471484|ref|ZP_05635483.1| DNA polymerase I [Buchnera aphidicola str. LSR1 (Acyrthosiphon
pisum)]
gi|384226227|ref|YP_005617390.1| DNA polymerase I [Buchnera aphidicola str. TLW03 (Acyrthosiphon
pisum)]
gi|384226733|ref|YP_005618484.1| DNA polymerase I [Buchnera aphidicola str. JF98 (Acyrthosiphon
pisum)]
gi|219622070|gb|ACL30226.1| DNA polymerase I [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
pisum)]
gi|219624625|gb|ACL30780.1| DNA polymerase I [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
gi|311086734|gb|ADP66815.1| DNA polymerase I [Buchnera aphidicola str. TLW03 (Acyrthosiphon
pisum)]
gi|311087830|gb|ADP67909.1| DNA polymerase I [Buchnera aphidicola str. JF98 (Acyrthosiphon
pisum)]
Length = 286
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ L+ YK NR PD +V +Q L +K + IK + +PG+EADDVIG L+ +
Sbjct: 70 FRNKLFKEYKKNRSSMPDLLVMQIQPLFEILKKIGIKTLTIPGIEADDVIGSLSYQLEKQ 129
Query: 63 GFKIQVVSPNKD 74
G KI ++S +KD
Sbjct: 130 GEKILILSHDKD 141
>gi|402703044|ref|ZP_10851023.1| DNA polymerase I [Rickettsia helvetica C9P9]
gi|14916560|sp|Q9RLB6.1|DPO1_RICHE RecName: Full=DNA polymerase I; Short=POL I
gi|5912332|emb|CAB56073.1| DNA polymerase I [Rickettsia helvetica]
Length = 921
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRPP P+ ++ L ++ ++ ++E G EADD+I A ++
Sbjct: 66 NFRHYIYPEYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADDIIATFATKTAA 125
Query: 62 DGFKIQVVSPNKD-SQILSHSL 82
G + ++S +KD Q++S ++
Sbjct: 126 LGENVVIISSDKDLLQLMSENI 147
>gi|421611872|ref|ZP_16053001.1| DNA polymerase I [Rhodopirellula baltica SH28]
gi|408497339|gb|EKK01869.1| DNA polymerase I [Rhodopirellula baltica SH28]
Length = 1071
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+ FR+ LYP YK NR PD + Q + ++ +I AM I +IE G EADD++ +A +
Sbjct: 232 VTFRNELYPEYKANRDSMPDELRQQIPLIRQAIDAMGIGIIEQSGFEADDLLATVAAKVE 291
Query: 61 DDGFKIQVVSPNKDSQIL 78
+ G + VV+ +KD + L
Sbjct: 292 EAGGRCLVVTSDKDCRQL 309
>gi|381172148|ref|ZP_09881282.1| DNA polymerase I [Xanthomonas citri pv. mangiferaeindicae LMG 941]
gi|380687415|emb|CCG37769.1| DNA polymerase I [Xanthomonas citri pv. mangiferaeindicae LMG 941]
Length = 934
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRP PD + +Q + + A+ I ++ + GVEADDVIG LA++ D
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLAVTISTGDKD 134
>gi|416334848|ref|ZP_11671590.1| DNA polymerase I [Escherichia coli WV_060327]
gi|320196914|gb|EFW71536.1| DNA polymerase I [Escherichia coli WV_060327]
Length = 884
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 25 FRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKA 84
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 85 GRPVLISTGDKDMAQLVTPNITLI 108
>gi|298253854|ref|ZP_06977441.1| DNA polymerase I [Gardnerella vaginalis 5-1]
gi|297531997|gb|EFH70972.1| DNA polymerase I [Gardnerella vaginalis 5-1]
Length = 1015
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+T+ P YK R P ++ L ++ +KA+ + IE PG E DDVIG LAV +
Sbjct: 82 FRNTMLPQYKGTRDAAPQELLSQLPIIQQMLKALGVTYIEKPGYEGDDVIGTLAVMGSNA 141
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G++ V+S ++D+ Q++ ++ +L
Sbjct: 142 GYRTLVLSGDRDAFQLIDDNITVL 165
>gi|442804423|ref|YP_007372572.1| DNA polymerase I [Clostridium stercorarium subsp. stercorarium DSM
8532]
gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium]
gi|442740273|gb|AGC67962.1| DNA polymerase I [Clostridium stercorarium subsp. stercorarium DSM
8532]
Length = 898
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH LY YK R PD + + K ++AM+I +IE G EADD+IG L++++ +
Sbjct: 68 FRHGLYEGYKAQRKGMPDELAMQIPLAKEVLRAMNIAIIEHEGYEADDIIGSLSLKAEKE 127
Query: 63 GFKIQVVSPNKDS-QILS 79
F + +++ ++DS Q++S
Sbjct: 128 NFDVIILTGDRDSFQLIS 145
>gi|365847528|ref|ZP_09388015.1| DNA-directed DNA polymerase [Yokenella regensburgei ATCC 43003]
gi|364572307|gb|EHM49862.1| DNA-directed DNA polymerase [Yokenella regensburgei ATCC 43003]
Length = 928
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEDYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLMAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPGITLI 152
>gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103]
gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103]
Length = 928
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L ++AM + ++ V GVEADDVIG LA+ +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRSQIEPLHEMVRAMGLPLLAVSGVEADDVIGTLALEAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 KGHAVLISTGDKDMAQLVTPGITLI 152
>gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40]
gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40]
Length = 926
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK NRPP PD + ++ L I+AM + +I GVEADDVIG A ++ +
Sbjct: 67 TFRDDIYSDYKANRPPMPDDLRAQIEPLHTIIRAMGLPLIIQDGVEADDVIGTYAQQATE 126
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + V + +KD +Q++S + L+
Sbjct: 127 KGIPVVVSTGDKDMAQLVSEHVTLV 151
>gi|392965204|ref|ZP_10330624.1| DNA polymerase I [Fibrisoma limi BUZ 3]
gi|387846587|emb|CCH52670.1| DNA polymerase I [Fibrisoma limi BUZ 3]
Length = 1034
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +P YK R P+ + Y++ I+AM I ++++ G EADDVIG LA ++
Sbjct: 69 TFRHEQFPMYKATRQSQPEDISIAKPYIRQIIEAMQIPILQLDGFEADDVIGTLAKKAAL 128
Query: 62 DGFKIQVVSPNKD 74
GF++ +++P+KD
Sbjct: 129 AGFEVYMMTPDKD 141
>gi|297243661|ref|ZP_06927592.1| DNA polymerase I [Gardnerella vaginalis AMD]
gi|296888412|gb|EFH27153.1| DNA polymerase I [Gardnerella vaginalis AMD]
Length = 1025
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+T+ P YK R P ++ L ++ +KA+ I IE PG E DDVIG LA +
Sbjct: 82 FRNTMLPQYKGTRDAAPQELLSQLPIIQQMLKALGITYIEKPGYEGDDVIGTLATMGANA 141
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G++ V+S ++D+ Q++ ++ +L
Sbjct: 142 GYRTLVLSGDRDAFQLIDDNITVL 165
>gi|283783098|ref|YP_003373852.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05]
gi|283441155|gb|ADB13621.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05]
Length = 1025
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+T+ P YK R P ++ L ++ +KA+ + IE PG E DDVIG LAV +
Sbjct: 82 FRNTMLPQYKGTRDAAPQELLSQLPIIQQMLKALGVTYIEKPGYEGDDVIGTLAVMGSNA 141
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G++ V+S ++D+ Q++ ++ +L
Sbjct: 142 GYRTLVLSGDRDAFQLIDDNITVL 165
>gi|160938046|ref|ZP_02085403.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC
BAA-613]
gi|158439040|gb|EDP16795.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC
BAA-613]
Length = 930
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +Y +YK R P P + + + +K +KAM I ++ + G EADD++G +A R
Sbjct: 63 TFRHEMYDAYKGTRKPMPQELHEQVPVMKDVLKAMGIPIMTLKGFEADDILGTVAKRCQA 122
Query: 62 DGFKIQVVSPNKDSQILSHSLCLLRIAPR 90
G ++ VVS ++D L+ +RI PR
Sbjct: 123 KGIQVSVVSGDRDLLQLADEHIKIRI-PR 150
>gi|390953723|ref|YP_006417481.1| DNA polymerase I [Aequorivita sublithincola DSM 14238]
gi|390419709|gb|AFL80466.1| DNA polymerase I [Aequorivita sublithincola DSM 14238]
Length = 952
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R+ ++P YK NR TPD + + ++ ++AM I ++ G EADDVIG LA ++ +G
Sbjct: 70 RNEMFPDYKANRDETPDAIRFAIPHIYNILEAMKIPIMVKEGFEADDVIGTLAKKAEKEG 129
Query: 64 FKIQVVSPNKD-SQILSHSLCLLR 86
+ +V+P+KD +Q++S ++ + R
Sbjct: 130 YTTFMVTPDKDFAQLVSENIFMYR 153
>gi|334121891|ref|ZP_08495935.1| DNA-directed DNA polymerase I [Enterobacter hormaechei ATCC 49162]
gi|333392672|gb|EGK63773.1| DNA-directed DNA polymerase I [Enterobacter hormaechei ATCC 49162]
Length = 944
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 82 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 141
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 142 AGRPVLISTGDKDMAQLVTPGITLI 166
>gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
domains [Magnetospirillum magnetotacticum MS-1]
Length = 926
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +YP YK +RPP PD +V ++ + +A + IE+ G EADD+I A +V+
Sbjct: 67 FRSEIYPEYKAHRPPAPDELVPQFPLVREATRAFDLPAIELEGFEADDLIATYARLAVEA 126
Query: 63 GFKIQVVSPNKD 74
G + +VS +KD
Sbjct: 127 GASVTIVSSDKD 138
>gi|34581200|ref|ZP_00142680.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica]
gi|28262585|gb|EAA26089.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
Length = 875
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRPP P+ ++ L ++ ++ ++E G EADD+I A ++
Sbjct: 66 NFRHQIYPDYKANRPPPPEDLIIQLPLVRDVASNLNFPILEKNGYEADDIIATFATKTAA 125
Query: 62 DGFKIQVVSPNKD 74
G + ++S +KD
Sbjct: 126 LGAHVVIISSDKD 138
>gi|383484503|ref|YP_005393416.1| DNA polymerase I [Rickettsia parkeri str. Portsmouth]
gi|378936857|gb|AFC75357.1| DNA polymerase I [Rickettsia parkeri str. Portsmouth]
Length = 875
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRPP P+ ++ L ++ ++ ++E G EADD+I A ++
Sbjct: 66 NFRHQIYPDYKANRPPPPEDLIIQLPLVRDVASNLNFPILEKNGYEADDIIATFATKTAA 125
Query: 62 DGFKIQVVSPNKD 74
G + ++S +KD
Sbjct: 126 LGAHVVIISSDKD 138
>gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
Length = 920
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 58/97 (59%), Gaps = 6/97 (6%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH +P YK R P+ + + +K + A I ++EV G EADDVIG LA ++ ++
Sbjct: 65 FRHEAFPPYKAQRQEPPEDIALSVPIIKEILHAFHIPILEVEGFEADDVIGTLATKAGNE 124
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPR---GFELV 95
G + +++P+KD Q++ ++ + R PR G+++V
Sbjct: 125 GVETYMLTPDKDYGQLIRKNVFMYR--PRHGGGYDIV 159
>gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A]
gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A]
Length = 955
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH SYK RP TP+ + ++ L+ ++ +++ I +PG EADD++G LA + +
Sbjct: 75 FRHKFDVSYKAGRPETPENFIVDIKNLQKVLEILNLFTITMPGYEADDILGTLATEASNK 134
Query: 63 GFKIQVVSPNKDS-QILS 79
G++++++S +KD+ Q++S
Sbjct: 135 GYRVKILSGDKDTFQLIS 152
>gi|157964926|ref|YP_001499750.1| DNA polymerase I [Rickettsia massiliae MTU5]
gi|157844702|gb|ABV85203.1| DNA polymerase I [Rickettsia massiliae MTU5]
Length = 875
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRPP P+ ++ L ++ ++ ++E G EADD+I A ++
Sbjct: 66 NFRHQIYPDYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKKGYEADDIIATFATKTAA 125
Query: 62 DGFKIQVVSPNKD 74
G + ++S +KD
Sbjct: 126 LGEHVVIISSDKD 138
>gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG]
gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG]
Length = 930
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V G+EADDVIG LA+++
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQASRL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDDNIMLI 152
>gi|15893129|ref|NP_360843.1| DNA polymerase I [Rickettsia conorii str. Malish 7]
gi|81527867|sp|Q92GB7.1|DPO1_RICCN RecName: Full=DNA polymerase I; Short=POL I
gi|15620336|gb|AAL03744.1| DNA polymerase I (POL I) [Rickettsia conorii str. Malish 7]
Length = 875
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRPP P+ ++ L ++ ++ ++E G EADD+I A ++
Sbjct: 66 NFRHQIYPDYKANRPPPPEDLIIQLPLVRDVASNLNFPILEKNGYEADDIIATFATKTAA 125
Query: 62 DGFKIQVVSPNKD 74
G + ++S +KD
Sbjct: 126 LGAHVVIISSDKD 138
>gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
Length = 930
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V G+EADDVIG LA+++
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQASRL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDDNIMLI 152
>gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
Length = 930
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH L+P YK RPP PD + L ++ M KV+++ VEADDVIG LA ++
Sbjct: 70 NFRHALFPDYKATRPPMPDDLRPQADMLPDLVELMGWKVLKISDVEADDVIGTLAKQAES 129
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+ + + +KD +Q++S + L+
Sbjct: 130 ADMNVIISTGDKDMAQLVSERITLV 154
>gi|390990081|ref|ZP_10260372.1| DNA polymerase I [Xanthomonas axonopodis pv. punicae str. LMG 859]
gi|372555183|emb|CCF67347.1| DNA polymerase I [Xanthomonas axonopodis pv. punicae str. LMG 859]
Length = 934
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRP PD + +Q + + A+ I ++ + GVEADDVIG LA++ D
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLAVTISTGDKD 134
>gi|238927513|ref|ZP_04659273.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
gi|238884795|gb|EEQ48433.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
Length = 874
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP YK R TP+ ++ + LK +A+ I +E+ EADD+IG LAV++ +
Sbjct: 66 FRTALYPDYKGTRDKTPEELIAQIPLLKELAEALGISFLELDDYEADDIIGTLAVQAAAE 125
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G + +V++ ++D+ Q++ L +L
Sbjct: 126 GVETRVITGDRDALQLIRPQLTVL 149
>gi|414562786|ref|YP_005617977.1| DNA polymerase I [Buchnera aphidicola str. JF99 (Acyrthosiphon
pisum)]
gi|311087322|gb|ADP67402.1| DNA polymerase I [Buchnera aphidicola str. JF99 (Acyrthosiphon
pisum)]
Length = 286
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ L+ YK NR PD +V +Q L +K + IK + +PG+EADDVIG L+ +
Sbjct: 70 FRNKLFKEYKKNRSSMPDLLVMQIQPLFEILKKIGIKTLTIPGIEADDVIGSLSYQLEKQ 129
Query: 63 GFKIQVVSPNKD 74
G KI ++S +KD
Sbjct: 130 GEKILILSHDKD 141
>gi|289811950|ref|ZP_06542579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. AG3]
Length = 172
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 VGRPVLISTGDKDMAQLVTQNITLI 152
>gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H]
gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H]
Length = 936
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR+ ++P YK NRPP PD + + + I AM + ++ +PGVEADDVIG LA ++ +
Sbjct: 78 TFRNDMFPEYKANRPPMPDDLRTQIAPIHEIITAMGLPLLVIPGVEADDVIGTLAKQADE 137
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 138 LGIETVISTGDKDMAQLVTKHVRLI 162
>gi|404421596|ref|ZP_11003310.1| DNA polymerase I [Mycobacterium fortuitum subsp. fortuitum DSM
46621]
gi|403658824|gb|EJZ13522.1| DNA polymerase I [Mycobacterium fortuitum subsp. fortuitum DSM
46621]
Length = 908
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK R TPD + K + A+ I V+ PG EADD+I LA + D
Sbjct: 84 FRKEKYPEYKEGRSATPDEFRGQIDITKEVLGALGITVLAEPGFEADDIIATLATQGEDA 143
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++DS Q++S + +L
Sbjct: 144 GYRVLVVTGDRDSLQLVSDDVTVL 167
>gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602]
gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602]
Length = 934
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L +KAM + ++ V GVEADDVIG LA+ +
Sbjct: 68 TFRDELFEQYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLALEAEQ 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGHAVLISTGDKDMAQLVTPGVTLI 152
>gi|304437426|ref|ZP_07397385.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304369682|gb|EFM23348.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 874
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LYP YK R TP+ ++ + LK +A+ I +E+ EADD+IG LAV++ +
Sbjct: 66 FRTALYPDYKGTRDKTPEELIAQIPLLKELAEALGISFLELDDYEADDIIGTLAVQAAAE 125
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G + +V++ ++D+ Q++ L +L
Sbjct: 126 GVETRVITGDRDALQLIRPQLTVL 149
>gi|195940271|ref|ZP_03085653.1| DNA polymerase I, partial [Escherichia coli O157:H7 str. EC4024]
Length = 881
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 69 FRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKA 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 129 GRPVLISTGDKDMAQLVTPNITLI 152
>gi|429744545|ref|ZP_19278023.1| DNA-directed DNA polymerase [Neisseria sp. oral taxon 020 str.
F0370]
gi|429162539|gb|EKY04852.1| DNA-directed DNA polymerase [Neisseria sp. oral taxon 020 str.
F0370]
Length = 932
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH ++ YK RPP PD + + L ++ M V+ VP VEADDVIG LA + +
Sbjct: 68 NFRHEMFADYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVVPQVEADDVIGTLAAQGGE 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G+ + + + +KD +Q+++ + L+
Sbjct: 128 AGWDVVISTGDKDMAQLVNERVTLV 152
>gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110]
gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110]
Length = 940
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR LYP YK NR P PD + + + +K M V+ VP +EADDVIG LA +
Sbjct: 70 TFRDDLYPEYKANRSPMPDDLRSQIDPIHEVVKLMGWPVLCVPDIEADDVIGTLAKTAAQ 129
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G ++ V S +KD SQ++ + ++
Sbjct: 130 QGIEVIVSSGDKDLSQLVDEHITII 154
>gi|15617030|ref|NP_240243.1| DNA polymerase I [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|17366258|sp|P57506.1|EX53_BUCAI RecName: Full=5'-3' exonuclease
gi|25331616|pir||A84980 DNA-directed DNA polymerase (EC 2.7.7.7) [imported] - Buchnera sp.
(strain APS)
gi|10039095|dbj|BAB13129.1| DNA polymerase I [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
Length = 286
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ L+ YK NR PD +V +Q L +K + IK + +PG+EADDVIG L+ +
Sbjct: 70 FRNKLFKEYKKNRSSMPDLLVMQIQPLFEILKKIGIKTLTIPGIEADDVIGSLSYQLEKQ 129
Query: 63 GFKIQVVSPNKD 74
G KI ++S +KD
Sbjct: 130 GEKILILSHDKD 141
>gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
Length = 934
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRP PD + +Q + + A+ I ++ + GVEADDVIG LA++ D
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLAVTISTGDKD 134
>gi|377578488|ref|ZP_09807465.1| DNA polymerase I [Escherichia hermannii NBRC 105704]
gi|377540074|dbj|GAB52630.1| DNA polymerase I [Escherichia hermannii NBRC 105704]
Length = 928
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ + L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPDITLI 152
>gi|145629928|ref|ZP_01785710.1| DNA polymerase I [Haemophilus influenzae R3021]
gi|144984209|gb|EDJ91632.1| DNA polymerase I [Haemophilus influenzae R3021]
Length = 255
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V G+EADDVIG LA+++
Sbjct: 68 TFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQASR 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 128 LGKKVLISTGDKDMAQLVDDNIMLI 152
>gi|418522210|ref|ZP_13088248.1| DNA polymerase I [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410701574|gb|EKQ60095.1| DNA polymerase I [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
Length = 934
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRP PD + +Q + + A+ I ++ + GVEADDVIG LA++ D
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 63 GFKIQVVSPNKD 74
G + + + +KD
Sbjct: 123 GLAVTISTGDKD 134
>gi|389811664|ref|ZP_10206203.1| DNA polymerase I [Rhodanobacter thiooxydans LCS2]
gi|388440171|gb|EIL96577.1| DNA polymerase I [Rhodanobacter thiooxydans LCS2]
Length = 915
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 46/72 (63%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR LY YK NRPP P+ + ++ + A++ A+ ++ V GVE DDVIG LA+++
Sbjct: 63 FRDALYDRYKANRPPMPEELRSQVEPMLATVGALGFPILRVGGVEGDDVIGTLALQAQAL 122
Query: 63 GFKIQVVSPNKD 74
G +++V + +KD
Sbjct: 123 GIEVEVSTSDKD 134
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,498,921,386
Number of Sequences: 23463169
Number of extensions: 48558829
Number of successful extensions: 124511
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5341
Number of HSP's successfully gapped in prelim test: 220
Number of HSP's that attempted gapping in prelim test: 118943
Number of HSP's gapped (non-prelim): 5593
length of query: 95
length of database: 8,064,228,071
effective HSP length: 64
effective length of query: 31
effective length of database: 6,562,585,255
effective search space: 203440142905
effective search space used: 203440142905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)