BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034414
         (95 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
          Length = 832

 Score = 65.5 bits (158), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 3/92 (3%)

Query: 2   NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
           +FRH  Y  YK  R PTP+   + L  +K  +  + +  +EVPG EADDV+  LA ++  
Sbjct: 72  SFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEK 131

Query: 62  DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGF 92
           +G+++++++ +KD  Q+LS  + +L   P G+
Sbjct: 132 EGYEVRILTADKDLYQLLSDRIHVLH--PEGY 161


>pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
 pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
          Length = 832

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 3/92 (3%)

Query: 2   NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
           +FRH  Y  YK  R PTP+   + L  +K  +  + +  +EVPG EADDV+  LA ++  
Sbjct: 72  SFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEK 131

Query: 62  DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGF 92
           +G+++++++ +KD  Q+LS  + +L   P G+
Sbjct: 132 EGYEVRILTADKDLYQLLSDRIHVLH--PEGY 161


>pdb|1COJ|A Chain A, Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic
           Bacterium
          Length = 212

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 3   FRHTLYPSYKNNRPPTPDTMVQGLQY 28
           + H  Y  YKN RPP  D   + + +
Sbjct: 165 YEHAYYVDYKNKRPPYIDAFFKNINW 190


>pdb|2QBU|A Chain A, Crystal Structure Of Methanothermobacter
           Thermautotrophicus Cbil
 pdb|2QBU|B Chain B, Crystal Structure Of Methanothermobacter
           Thermautotrophicus Cbil
          Length = 232

 Score = 26.9 bits (58), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 26  LQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDGFKIQVVSPNKDSQI 77
             YL+  I+ M  K   VPGV +       A R++ +G +I +V P  D + 
Sbjct: 111 FSYLQQRIEDMGFKTEMVPGVTSFTACAATAGRTLVEGDEILLVVPRVDDRF 162


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,818,037
Number of Sequences: 62578
Number of extensions: 92274
Number of successful extensions: 224
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 5
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)