BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034414
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P30313|DPO1F_THETH DNA polymerase I, thermostable OS=Thermus thermophilus GN=polA PE=1
SV=1
Length = 831
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y +YK R PTP+ + L +K + + + +EVPG EADDV+ LA R+
Sbjct: 71 SFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGLVRLEVPGFEADDVLATLAKRAEK 130
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGF 92
+G+++++++ ++D Q+LS + +L P G+
Sbjct: 131 EGYEVRILTADRDLYQLLSERIAILH--PEGY 160
>sp|Q55971|DPO1_SYNY3 DNA polymerase I OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=polA PE=3 SV=1
Length = 986
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 48/73 (65%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FRH +YK+NR TP+ + L YL+ ++A++++ I G EADD++G LA + D
Sbjct: 74 TFRHEADGAYKSNRQETPEDFAEDLSYLQQLLEALNLQTITYAGYEADDILGTLACQGSD 133
Query: 62 DGFKIQVVSPNKD 74
G++++++S ++D
Sbjct: 134 AGYQVKILSGDRD 146
>sp|Q1RH76|DPO1_RICBR DNA polymerase I OS=Rickettsia bellii (strain RML369-C) GN=polA
PE=3 SV=1
Length = 871
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRPP P+ ++ L ++ + ++ ++E G EADD+I A ++
Sbjct: 66 NFRHEIYPEYKANRPPPPEDLIAQLPLVRDVARNLNFPILEKNGFEADDIIATFAAKTAS 125
Query: 62 DGFKIQVVSPNKD 74
G ++ V+S +KD
Sbjct: 126 IGEEVVVISSDKD 138
>sp|P19821|DPO1_THEAQ DNA polymerase I, thermostable OS=Thermus aquaticus GN=polA PE=1
SV=1
Length = 832
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y YK R PTP+ + L +K + + + +EVPG EADDV+ LA ++
Sbjct: 72 SFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEK 131
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRGF 92
+G+++++++ +KD Q+LS + +L P G+
Sbjct: 132 EGYEVRILTADKDLYQLLSDRIHVLH--PEGY 161
>sp|P0A550|DPO1_MYCTU DNA polymerase I OS=Mycobacterium tuberculosis GN=polA PE=3 SV=1
Length = 904
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 79 FRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQAENE 138
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++D+ Q++S + +L
Sbjct: 139 GYRVLVVTGDRDALQLVSDDVTVL 162
>sp|P0A551|DPO1_MYCBO DNA polymerase I OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=polA PE=3 SV=1
Length = 904
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YP YK NR TPD + K + A+ I V+ PG EADD+I LA ++ ++
Sbjct: 79 FRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQAENE 138
Query: 63 GFKIQVVSPNKDS-QILSHSLCLL 85
G+++ VV+ ++D+ Q++S + +L
Sbjct: 139 GYRVLVVTGDRDALQLVSDDVTVL 162
>sp|P43741|DPO1_HAEIN DNA polymerase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=polA PE=3 SV=1
Length = 930
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR ++ YK++RPP PD + + +Q L I+A+ I ++ V G+EADDVIG LA+++
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQASSL 128
Query: 63 GFKIQVVSPNKD-SQILSHSLCLL 85
G K+ + + +KD +Q++ ++ L+
Sbjct: 129 GKKVLISTGDKDMAQLVDDNIMLI 152
>sp|Q9RAA9|DPO1_RICFE DNA polymerase I OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=polA PE=3 SV=1
Length = 922
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRPP P+ +V L ++ ++ ++E G EADD+I A ++
Sbjct: 66 NFRHHIYPEYKANRPPPPEDLVVQLPLVRDVASNLNFPILEKNGYEADDIIATFAAKTAA 125
Query: 62 DGFKIQVVSPNKD 74
G + V+S +KD
Sbjct: 126 LGEDVVVISSDKD 138
>sp|P00582|DPO1_ECOLI DNA polymerase I OS=Escherichia coli (strain K12) GN=polA PE=1 SV=1
Length = 928
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 AGRPVLISTGDKDMAQLVTPNITLI 152
>sp|Q9RLB6|DPO1_RICHE DNA polymerase I OS=Rickettsia helvetica GN=polA PE=3 SV=1
Length = 921
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRPP P+ ++ L ++ ++ ++E G EADD+I A ++
Sbjct: 66 NFRHYIYPEYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADDIIATFATKTAA 125
Query: 62 DGFKIQVVSPNKD-SQILSHSL 82
G + ++S +KD Q++S ++
Sbjct: 126 LGENVVIISSDKDLLQLMSENI 147
>sp|Q92GB7|DPO1_RICCN DNA polymerase I OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=polA PE=3 SV=1
Length = 875
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +YP YK NRPP P+ ++ L ++ ++ ++E G EADD+I A ++
Sbjct: 66 NFRHQIYPDYKANRPPPPEDLIIQLPLVRDVASNLNFPILEKNGYEADDIIATFATKTAA 125
Query: 62 DGFKIQVVSPNKD 74
G + ++S +KD
Sbjct: 126 LGAHVVIISSDKD 138
>sp|P57506|EX53_BUCAI 5'-3' exonuclease OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=BU431 PE=3 SV=1
Length = 286
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR+ L+ YK NR PD +V +Q L +K + IK + +PG+EADDVIG L+ +
Sbjct: 70 FRNKLFKEYKKNRSSMPDLLVMQIQPLFEILKKIGIKTLTIPGIEADDVIGSLSYQLEKQ 129
Query: 63 GFKIQVVSPNKD 74
G KI ++S +KD
Sbjct: 130 GEKILILSHDKD 141
>sp|O67550|EX53_AQUAE 5'-3' exonuclease OS=Aquifex aeolicus (strain VF5) GN=aq_1628 PE=3
SV=1
Length = 289
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R +Y YK RP PD + + +K +K I ++E+PG EADDVI LA + G
Sbjct: 65 REKIYADYKKQRPKAPDPLKVQIPVIKEILKLAGIPLLELPGYEADDVIAYLAEKFSQKG 124
Query: 64 FKIQVVSPNKD-SQILSHSLCLL 85
FK+++ SP+KD Q++S ++ ++
Sbjct: 125 FKVKIYSPDKDLLQLVSENVLVI 147
>sp|P52028|DPO1T_THET8 DNA polymerase I, thermostable OS=Thermus thermophilus (strain HB8
/ ATCC 27634 / DSM 579) GN=polA PE=3 SV=2
Length = 834
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y +YK R PTP+ + L +K + + +EVPG EADDV+ LA ++
Sbjct: 73 SFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVLATLAKKAEK 132
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+G+++++++ ++D Q++S + +L P G
Sbjct: 133 EGYEVRILTADRDLYQLVSDRVAVLH--PEG 161
>sp|Q9F173|DPO1_SALTY DNA polymerase I OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=polA PE=3 SV=2
Length = 928
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR L+ YK++RPP PD + ++ L A +KAM + ++ V GVEADDVIG LA +
Sbjct: 68 TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
G + + + +KD +Q+++ ++ L+
Sbjct: 128 VGRPVLISTGDKDMAQLVTPNITLI 152
>sp|O52225|DPO1_THEFI DNA polymerase I, thermostable OS=Thermus filiformis GN=polA PE=1
SV=1
Length = 833
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y +YK R PTP+ + L +K + + + +E PG EADDV+G LA ++
Sbjct: 71 SFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVLGTLAKKAER 130
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLL 85
+G ++++++ ++D Q+LS + +L
Sbjct: 131 EGMEVRILTGDRDFFQLLSEKVSVL 155
>sp|C5BHA5|XNI_EDWI9 Protein Xni OS=Edwardsiella ictaluri (strain 93-146) GN=xni PE=3
SV=1
Length = 253
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
++RH L P YK R PD + Q ++ L+A+ A + PG EADD+ LA +
Sbjct: 57 SWRHRLLPGYKAGRQAMPDALAQEMESLRAAFTAQGVACWHSPGNEADDLAATLAYKVAQ 116
Query: 62 DGFKIQVVSPNKD-SQILS 79
G ++ +VS +K Q+LS
Sbjct: 117 GGHRVTIVSTDKGYCQLLS 135
>sp|P80194|DPO1_THECA DNA polymerase I, thermostable OS=Thermus caldophilus GN=polA PE=1
SV=2
Length = 834
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+FRH Y +YK R PTP+ + L +K + + +EVPG EADDV+ LA
Sbjct: 73 SFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVLATLAKNPEK 132
Query: 62 DGFKIQVVSPNKD-SQILSHSLCLLRIAPRG 91
+G+++++++ ++D Q++S + +L P G
Sbjct: 133 EGYEVRILTADRDLDQLVSDRVAVLH--PEG 161
>sp|P59199|DPO1_STRPN DNA polymerase I OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=polA PE=3 SV=1
Length = 877
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
FR +Y YK R TPD + +++ + M I+ ++ EADD+IG L +
Sbjct: 69 TFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYDLAQYEADDIIGTLDKLAEQ 128
Query: 62 DGFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
DGF I +VS +KD L+ ++ I+ +G
Sbjct: 129 DGFDITIVSGDKDLIQLTDEHTVVEISKKG 158
>sp|Q04957|DPO1_BACCA DNA polymerase I OS=Bacillus caldotenax GN=polA PE=1 SV=1
Length = 877
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + YK R TP + + L+ ++A I E+ EADD+IG LA R+ +
Sbjct: 65 FRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDIIGTLAARAEQE 124
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF+++V+S ++D L+ + I +G
Sbjct: 125 GFEVKVISGDRDLTQLASPHVTVDITKKG 153
>sp|Q8K9D0|EX53_BUCAP 5'-3' exonuclease OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=pol PE=3 SV=1
Length = 287
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFR+T++ YK+NR P+ + +Q L ++ + IK + + G+EADD+IG LA +
Sbjct: 69 NFRNTIFKEYKSNRSAMPNKLYVQIQPLFKILEEIGIKTLSILGIEADDIIGSLAYKLEQ 128
Query: 62 DGFKIQVVSPNKDS-QILSHSLCLLRIA 88
G ++ +VS +KD Q+++ ++ +L I+
Sbjct: 129 KGEQVLIVSHDKDMIQLITDNINVLNIS 156
>sp|A6TD79|XNI_KLEP7 Protein Xni OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC
700721 / MGH 78578) GN=xni PE=3 SV=1
Length = 251
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+RH P YK R P P+T+V + L+A+ + I+ PG EADD+ LAV+
Sbjct: 57 GWRHQRLPEYKAGRAPMPETLVAEMPALRAAFEQRGIRCWASPGSEADDLAATLAVKVAQ 116
Query: 62 DGFKIQVVSPNKD-SQILS 79
G + +VS +K Q+LS
Sbjct: 117 AGHQATIVSTDKGYCQLLS 135
>sp|B5XUZ0|XNI_KLEP3 Protein Xni OS=Klebsiella pneumoniae (strain 342) GN=xni PE=3 SV=1
Length = 251
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+RH P YK R P P+T+V + L+A+ + I+ PG EADD+ LAV+
Sbjct: 57 GWRHQRLPEYKAGRAPMPETLVAEMPALRAAFEQRGIRCWASPGSEADDLAATLAVKVAQ 116
Query: 62 DGFKIQVVSPNKD-SQILS 79
G + +VS +K Q+LS
Sbjct: 117 AGHQATIVSTDKGYCQLLS 135
>sp|Q9RLA0|DPO1_RICTY DNA polymerase I OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=polA PE=3 SV=1
Length = 872
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +Y +YK NRP P+ ++ L ++ ++ ++E G EADD+I A +++
Sbjct: 66 NFRHKIYQNYKANRPTPPEDLIGQLPLIRDVASHLNFAILEKNGYEADDIIATFATKTIT 125
Query: 62 DGFKIQVVSPNKD-SQILSHSL 82
G ++ ++S +KD Q++S ++
Sbjct: 126 LGKEVIIISSDKDLLQLMSKNI 147
>sp|P52026|DPO1_GEOSE DNA polymerase I OS=Geobacillus stearothermophilus GN=polA PE=1
SV=2
Length = 876
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + YK R TP + + L+ +KA I E+ EADD+IG +A R+ +
Sbjct: 65 FRHETFQDYKGGRQQTPPELSEQFPLLRELLKAYRIPAYELDHYEADDIIGTMAARAERE 124
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF ++V+S ++D L+ + I +G
Sbjct: 125 GFAVKVISGDRDLTQLASPQVTVEITKKG 153
>sp|P59200|DPO1_STRR6 DNA polymerase I OS=Streptococcus pneumoniae (strain ATCC BAA-255 /
R6) GN=polA PE=3 SV=1
Length = 877
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR +Y YK R TPD + +++ + M I+ E+ EADD+IG L + D
Sbjct: 70 FRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDIIGTLDKLAEQD 129
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF I +VS +KD L+ ++ I+ +G
Sbjct: 130 GFDITIVSGDKDLIQLTDEHTVVEISKKG 158
>sp|Q59156|DPO1_CALBD DNA polymerase I OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=polA PE=3 SV=2
Length = 850
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDDG 63
R + Y YK NR P PD + + Y++ + A +I +IE G EADDVIG L + + G
Sbjct: 64 RKSEYEEYKANRKPMPDNLQVQIPYVREILYAFNIPIIEFEGYEADDVIGSLVNQFKNTG 123
Query: 64 FKIQVVSPNKDSQILSHSLCLLRIAPRGFE 93
I +++ ++D+ L +++I F+
Sbjct: 124 LDIVIITGDRDTLQLLDKNVVVKIVSTKFD 153
>sp|O51498|DPO1_BORBU DNA polymerase I OS=Borrelia burgdorferi (strain ATCC 35210 / B31 /
CIP 102532 / DSM 4680) GN=polA PE=3 SV=1
Length = 908
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR YPSYK R PD ++ + ++K + I + E+ G EADD++ A ++ +
Sbjct: 66 FRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLASFAKKAAKN 125
Query: 63 GFKIQVVSPNKD-SQILSHSLCLLRIAPRGF 92
+ ++SP+KD Q +S + +L+I F
Sbjct: 126 NYLTYIISPDKDLLQTMSEYVKILKIENNSF 156
>sp|O05949|DPO1_RICPR DNA polymerase I OS=Rickettsia prowazekii (strain Madrid E) GN=polA
PE=3 SV=1
Length = 867
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
NFRH +Y +YK NRP P ++ L ++ ++E G EADD+I A ++V
Sbjct: 66 NFRHKIYQNYKANRPLPPKDLIAQLPLVRDVASNFKFAILEKNGYEADDIIATFATKTVS 125
Query: 62 DGFKIQVVSPNKD-SQILSHSL 82
G ++ ++S +KD Q++S ++
Sbjct: 126 LGEEVIIISSDKDLLQLMSKNI 147
>sp|Q9HT80|DPO1_PSEAE DNA polymerase I OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=polA PE=3 SV=1
Length = 913
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FR L+ YK NRP PD + ++ L AS++A+ + ++ V GVEADDVIG LA S
Sbjct: 66 FRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLARSSAAA 125
Query: 63 GFKIQVVSPNKD 74
+ + + +KD
Sbjct: 126 DRPVVISTGDKD 137
>sp|O34996|DPO1_BACSU DNA polymerase I OS=Bacillus subtilis (strain 168) GN=polA PE=3
SV=1
Length = 880
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH + YK R TP + + + +++ + A I E+ EADD+IG LA + D
Sbjct: 67 FRHGTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDIIGTLAKSAEKD 126
Query: 63 GFKIQVVSPNKDSQILSHSLCLLRIAPRG 91
GF+++V S +KD L+ + I +G
Sbjct: 127 GFEVKVFSGDKDLTQLATDKTTVAITRKG 155
>sp|Q6D8F6|XNI_ERWCT Protein Xni OS=Erwinia carotovora subsp. atroseptica (strain SCRI
1043 / ATCC BAA-672) GN=xni PE=3 SV=1
Length = 260
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
++RH L P YK R P PD + Q L +K + A+ ++ PG EADD+ LA +
Sbjct: 57 SWRHQLLPDYKAGRTPMPDNLKQELPQIKTAFAAVGVESWHSPGNEADDLAATLATKLSS 116
Query: 62 DGFKIQVVSPNK 73
G + ++S +K
Sbjct: 117 AGHQATIISTDK 128
>sp|Q7N8Q9|XNI_PHOLL Protein Xni OS=Photorhabdus luminescens subsp. laumondii (strain
TT01) GN=xni PE=3 SV=1
Length = 252
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
++RH + P YK R P PD + Q + ++AS + + G EADD+ LAV+
Sbjct: 56 SWRHQILPDYKAGRSPMPDNLQQEMPQIRASFEQQGVTCWHAKGHEADDLAATLAVKVTA 115
Query: 62 DGFKIQVVSPNKD-SQILS 79
G + +VS +K Q+LS
Sbjct: 116 AGHNVTIVSTDKGYCQLLS 134
>sp|B8EAT2|XNI_SHEB2 Protein Xni OS=Shewanella baltica (strain OS223) GN=xni PE=3 SV=1
Length = 262
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+++R LYP+YK R P P+ + QGL L+ + AM I I EADDVI LA+++
Sbjct: 58 ISWRKQLYPNYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI-YAAAEADDVIATLAIKTA 116
Query: 61 DDGFKIQVVSPNKDSQILSH 80
+ +VS +K L+H
Sbjct: 117 KAQGEAIIVSTDKGFSQLNH 136
>sp|A8GIF8|XNI_SERP5 Protein Xni OS=Serratia proteamaculans (strain 568) GN=xni PE=3
SV=1
Length = 251
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
++RH + P YK R P PD + Q + L+ + +++ + PG EADD+ L +
Sbjct: 57 SWRHQILPDYKAGRSPMPDNLQQEMPQLRQAFESLGVACWHSPGNEADDLAATLTAKVAG 116
Query: 62 DGFKIQVVSPNK 73
G ++ +VS +K
Sbjct: 117 GGHQVTIVSTDK 128
>sp|A1RLT6|XNI_SHESW Protein Xni OS=Shewanella sp. (strain W3-18-1) GN=xni PE=3 SV=1
Length = 262
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+++R LYP YK R P P+ + QGL+ L+ + ++I I EADDVI LAV++
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAQGLRALQEHLATLNIASI-YAAAEADDVIATLAVKTA 116
Query: 61 DDGFKIQVVSPNKDSQILSH 80
+ +VS +K L+H
Sbjct: 117 KAQGEAIIVSTDKGFSQLNH 136
>sp|A4Y4Y4|XNI_SHEPC Protein Xni OS=Shewanella putrefaciens (strain CN-32 / ATCC
BAA-453) GN=xni PE=3 SV=1
Length = 262
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+++R LYP YK R P P+ + QGL+ L+ + ++I I EADDVI LAV++
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAQGLRALQEHLATLNIASI-YAAAEADDVIATLAVKTA 116
Query: 61 DDGFKIQVVSPNKDSQILSH 80
+ +VS +K L+H
Sbjct: 117 KAQGEAIIVSTDKGFSQLNH 136
>sp|A9KTM9|XNI_SHEB9 Protein Xni OS=Shewanella baltica (strain OS195) GN=xni PE=3 SV=1
Length = 262
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+++R LYP YK R P P+ + QGL L+ + AM I I EADDVI LA+++
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI-YAAAEADDVIATLAIKTA 116
Query: 61 DDGFKIQVVSPNKDSQILSH 80
+ +VS +K L+H
Sbjct: 117 KAQGEAIIVSTDKGFSQLNH 136
>sp|A6WL18|XNI_SHEB8 Protein Xni OS=Shewanella baltica (strain OS185) GN=xni PE=3 SV=1
Length = 262
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+++R LYP YK R P P+ + QGL L+ + AM I I EADDVI LA+++
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI-YAAAEADDVIATLAIKTA 116
Query: 61 DDGFKIQVVSPNKDSQILSH 80
+ +VS +K L+H
Sbjct: 117 KAQGEAIIVSTDKGFSQLNH 136
>sp|A3D2C6|XNI_SHEB5 Protein Xni OS=Shewanella baltica (strain OS155 / ATCC BAA-1091)
GN=xni PE=3 SV=1
Length = 262
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
+++R LYP YK R P P+ + QGL L+ + AM I I EADDVI LA+++
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI-YAAAEADDVIATLAIKTA 116
Query: 61 DDGFKIQVVSPNKDSQILSH 80
+ +VS +K L+H
Sbjct: 117 KAQGEAIIVSTDKGFSQLNH 136
>sp|P52027|DPO1_DEIRA DNA polymerase I OS=Deinococcus radiodurans (strain ATCC 13939 /
DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB
9279 / R1 / VKM B-1422) GN=polA PE=3 SV=2
Length = 956
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVDD 62
FRH Y YK+ R TP+ + + ++A + A+ +E PG EADDVI L +
Sbjct: 108 FRHEQYEGYKSGRAQTPEDLPGQINRIRALVDALGFPRLEEPGYEADDVIASLTRMAEGK 167
Query: 63 GFKIQVVSPNKDS 75
G+++++V+ ++D+
Sbjct: 168 GYEVRIVTSDRDA 180
>sp|A7MR03|XNI_CROS8 Protein Xni OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=xni
PE=3 SV=1
Length = 251
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+RH L P YK RPP PD + Q + L+ + + V G EADD+ LAV+
Sbjct: 57 GWRHQLLPDYKAGRPPMPDDLHQEMPALRDAFTRRGVPCWHVEGNEADDLAATLAVKVAA 116
Query: 62 DGFKIQVVSPNK 73
G + +VS +K
Sbjct: 117 AGHEATIVSTDK 128
>sp|A0KZ94|XNI_SHESA Protein Xni OS=Shewanella sp. (strain ANA-3) GN=xni PE=3 SV=1
Length = 260
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSV 60
M++R LYP YK R P P+ + GL L+ +K++ I+ I EADDVI LA+++
Sbjct: 58 MSWRKQLYPDYKKGRKPMPEPLAAGLPALQEHLKSVQIQSI-YAAAEADDVIATLAMKTA 116
Query: 61 DDGFKIQVVSPNKDSQILSH 80
+ +VS +K L+H
Sbjct: 117 KAQGEAVIVSTDKGFSQLNH 136
>sp|Q87RT0|XNI_VIBPA Protein Xni OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD
2210633) GN=xni PE=3 SV=1
Length = 260
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+R + P YK NR P P+ ++QGL ++ + I + G EADD++ LA +
Sbjct: 62 GWRAEILPDYKQNRKPMPEPLMQGLDAIQQAWWEQGIDSLLSEGDEADDLVATLATKVAS 121
Query: 62 DGFKIQVVSPNKD-SQILSHSL 82
G K+ +VS +K Q+LS +L
Sbjct: 122 HGEKVTIVSTDKGYCQLLSPTL 143
>sp|A7MYB8|XNI_VIBHB Protein Xni OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=xni
PE=3 SV=1
Length = 260
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+R + P YK NR P P+ +++GL L+ + I + G EADD++ LA +
Sbjct: 62 GWRAEILPDYKQNRKPMPEPLIKGLDALQQAWWEQGIDSLLSEGDEADDLVATLATKVAS 121
Query: 62 DGFKIQVVSPNKD-SQILSHSL 82
G K+ +VS +K Q+LS +L
Sbjct: 122 HGEKVTIVSTDKGYCQLLSPTL 143
>sp|B5RDV0|XNI_SALG2 Protein Xni OS=Salmonella gallinarum (strain 287/91 / NCTC 13346)
GN=xni PE=3 SV=2
Length = 251
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+RH P YK RPP PD + + L+A+ + I+ G EADD+ LA++ +
Sbjct: 57 GWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGIRCWASDGNEADDLAATLALKVTE 116
Query: 62 DGFKIQVVSPNKD-SQILSHSL 82
G + +VS +K Q+LS L
Sbjct: 117 AGHQATIVSTDKGYCQLLSPGL 138
>sp|B5QWQ6|XNI_SALEP Protein Xni OS=Salmonella enteritidis PT4 (strain P125109) GN=xni
PE=3 SV=2
Length = 251
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+RH P YK RPP PD + + L+A+ + I+ G EADD+ LA++ +
Sbjct: 57 GWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGIRCWASDGNEADDLAATLALKVTE 116
Query: 62 DGFKIQVVSPNKD-SQILSHSL 82
G + +VS +K Q+LS L
Sbjct: 117 AGHQATIVSTDKGYCQLLSPGL 138
>sp|B5FTX5|XNI_SALDC Protein Xni OS=Salmonella dublin (strain CT_02021853) GN=xni PE=3
SV=1
Length = 251
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+RH P YK RPP PD + + L+A+ + I+ G EADD+ LA++ +
Sbjct: 57 GWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGIRCWASDGNEADDLAATLALKVTE 116
Query: 62 DGFKIQVVSPNKD-SQILSHSL 82
G + +VS +K Q+LS L
Sbjct: 117 AGHQATIVSTDKGYCQLLSPGL 138
>sp|B7LVW5|XNI_ESCF3 Protein Xni OS=Escherichia fergusonii (strain ATCC 35469 / DSM
13698 / CDC 0568-73) GN=xni PE=3 SV=2
Length = 251
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
+RH P YK RPP PD + + L+A+ + + G EADD+ LAV+
Sbjct: 57 GWRHQRLPDYKAGRPPMPDELHNEMPTLRAAFEQRGVPCWSATGNEADDLAATLAVKVTQ 116
Query: 62 DGFKIQVVSPNKD-SQILSHSL 82
G + +VS +K Q+LS +L
Sbjct: 117 AGHQATIVSTDKGYCQLLSPTL 138
>sp|B1KQX1|XNI_SHEWM Protein Xni OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=xni
PE=3 SV=1
Length = 252
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEVPGVEADDVIGKLAVRSVD 61
++R TLY YK R P P+ + + L LK + +++ I+ EADDVI LA + V+
Sbjct: 59 SWRKTLYEDYKKGRKPMPEALAKSLPALKTHLSELNVNSIDAE-AEADDVIATLATKLVN 117
Query: 62 DGFKIQVVSPNKDSQILSHS 81
+ K +VS +K L+H+
Sbjct: 118 NQGKAIIVSTDKGFTQLTHT 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,043,172
Number of Sequences: 539616
Number of extensions: 1190252
Number of successful extensions: 3715
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 3560
Number of HSP's gapped (non-prelim): 162
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)