Query 034421
Match_columns 95
No_of_seqs 102 out of 153
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 03:39:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eqp_A Tumor necrosis factor r 74.0 0.9 3.1E-05 27.5 0.6 18 25-43 21-38 (50)
2 2kmz_A Tumor necrosis factor r 72.9 1.1 3.9E-05 27.3 0.9 18 25-43 14-31 (53)
3 2kog_A Vesicle-associated memb 59.3 11 0.00036 25.6 3.7 16 52-67 93-108 (119)
4 2kog_A Vesicle-associated memb 58.3 8.7 0.0003 26.0 3.2 25 50-74 94-118 (119)
5 2kn0_A FN14; tweak, TNF recept 48.8 7.1 0.00024 24.7 1.4 18 25-43 10-27 (66)
6 3hd7_A Vesicle-associated memb 38.5 32 0.0011 21.9 3.3 19 52-70 65-83 (91)
7 3s8f_B Cytochrome C oxidase su 33.0 51 0.0017 23.3 3.9 31 43-73 9-39 (168)
8 2dw3_A Intrinsic membrane prot 29.3 51 0.0018 21.3 3.1 20 55-74 33-52 (77)
9 2k1e_A Water soluble analogue 26.6 78 0.0027 19.7 3.7 27 52-78 4-30 (103)
10 3lb6_C IL-13, interleukin-13 r 23.7 17 0.00057 27.4 0.0 26 57-82 342-367 (380)
11 2nrg_A Intrinsic membrane prot 20.9 91 0.0031 20.3 3.1 20 55-74 34-53 (82)
12 2lat_A Dolichyl-diphosphooligo 20.9 97 0.0033 17.3 2.8 19 54-72 9-27 (37)
13 1p7b_A Integral membrane chann 20.3 97 0.0033 23.9 3.7 31 46-76 54-84 (333)
No 1
>2eqp_A Tumor necrosis factor receptor superfamily member 12A; STN_TNFRSF12A_TNFR domain; NMR {Homo sapiens} PDB: 2rpj_A
Probab=73.96 E-value=0.9 Score=27.45 Aligned_cols=18 Identities=39% Similarity=1.018 Sum_probs=16.2
Q ss_pred eeeCCCCcceecCcchhhH
Q 034421 25 QWGNDQMQLCYNCDSCKAG 43 (95)
Q Consensus 25 ~WsNd~~~LCy~CdSCKAG 43 (95)
.||-|-. +|-+|.||++.
T Consensus 21 swS~DLd-KCMdcssC~~r 38 (50)
T 2eqp_A 21 SWSADLD-KCMDCASCRAR 38 (50)
T ss_dssp EEETTTT-EEECHHHHHHC
T ss_pred ccchhhh-hhhccccCCCC
Confidence 8999976 99999999985
No 2
>2kmz_A Tumor necrosis factor receptor superfamily member; FN14, tweak, TNF receptor, CRD, tnfrsf12A, angiogenesis, APO cell adhesion; NMR {Homo sapiens}
Probab=72.86 E-value=1.1 Score=27.34 Aligned_cols=18 Identities=39% Similarity=1.018 Sum_probs=16.2
Q ss_pred eeeCCCCcceecCcchhhH
Q 034421 25 QWGNDQMQLCYNCDSCKAG 43 (95)
Q Consensus 25 ~WsNd~~~LCy~CdSCKAG 43 (95)
.||-|-. +|-+|.||++.
T Consensus 14 swS~DLd-KCmdcs~C~~~ 31 (53)
T 2kmz_A 14 SWSADLD-KCMDCASCRAR 31 (53)
T ss_dssp BCCTTTT-CCBCSTTCSSC
T ss_pred ccchhhh-hhhccccCCCC
Confidence 7999976 99999999985
No 3
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=59.33 E-value=11 Score=25.57 Aligned_cols=16 Identities=19% Similarity=0.837 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHHH
Q 034421 52 WRRVDIILIVTLVALI 67 (95)
Q Consensus 52 Wr~~ai~niv~lv~Li 67 (95)
|++..+..|+.+++++
T Consensus 93 wkn~K~~iii~~iv~i 108 (119)
T 2kog_A 93 WKNLKMMIILGVICAI 108 (119)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6665544444333333
No 4
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=58.33 E-value=8.7 Score=25.97 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=15.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhh
Q 034421 50 KEWRRVDIILIVTLVALILVYLIGC 74 (95)
Q Consensus 50 ~~Wr~~ai~niv~lv~Li~vy~vGC 74 (95)
++++-..++-++++++++++.+..|
T Consensus 94 kn~K~~iii~~iv~iii~iIi~~~c 118 (119)
T 2kog_A 94 KNLKMMIILGVICAIILIIIIVYFS 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhee
Confidence 3455556666666666666666666
No 5
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=48.82 E-value=7.1 Score=24.73 Aligned_cols=18 Identities=28% Similarity=0.750 Sum_probs=15.6
Q ss_pred eeeCCCCcceecCcchhhH
Q 034421 25 QWGNDQMQLCYNCDSCKAG 43 (95)
Q Consensus 25 ~WsNd~~~LCy~CdSCKAG 43 (95)
.||-|-+ .|-+|.+|++.
T Consensus 10 sws~dLd-kCM~Cs~C~~~ 27 (66)
T 2kn0_A 10 AYSQDLG-KCMECSVCKNS 27 (66)
T ss_dssp EEETTTT-EEEESTTCSSC
T ss_pred ccchhHH-hhcccCcCCCC
Confidence 7998875 99999999874
No 6
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=38.45 E-value=32 Score=21.89 Aligned_cols=19 Identities=16% Similarity=0.773 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 034421 52 WRRVDIILIVTLVALILVY 70 (95)
Q Consensus 52 Wr~~ai~niv~lv~Li~vy 70 (95)
|++.-+..++.+++++++|
T Consensus 65 wkn~K~~iii~~iv~~il~ 83 (91)
T 3hd7_A 65 WKNLKMMIILGVICAIILI 83 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6655444444333333333
No 7
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=33.02 E-value=51 Score=23.29 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=22.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 034421 43 GLLANLKKEWRRVDIILIVTLVALILVYLIG 73 (95)
Q Consensus 43 Gvl~~lk~~Wr~~ai~niv~lv~Li~vy~vG 73 (95)
-+++...|-|-.+++..+++++.+|.+-+++
T Consensus 9 ~~~~~~e~~w~~~~~~~~~~f~~~~~~~~~~ 39 (168)
T 3s8f_B 9 KAILAYEKGWLAFSLAMLFVFIALIAYTLAT 39 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4677788899888888888777666655554
No 8
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=29.31 E-value=51 Score=21.31 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 034421 55 VDIILIVTLVALILVYLIGC 74 (95)
Q Consensus 55 ~ai~niv~lv~Li~vy~vGC 74 (95)
++++.+..+++++..|.+|=
T Consensus 33 AAv~f~~~~~~lv~l~~iG~ 52 (77)
T 2dw3_A 33 AGGVFFGTLLLIGFFRVVGR 52 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777777888888898884
No 9
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=26.64 E-value=78 Score=19.68 Aligned_cols=27 Identities=7% Similarity=-0.178 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccc
Q 034421 52 WRRVDIILIVTLVALILVYLIGCCAFR 78 (95)
Q Consensus 52 Wr~~ai~niv~lv~Li~vy~vGCca~r 78 (95)
+.+..+..++++++++++.+.+-..+.
T Consensus 4 ~~r~~l~~~~~~~~~~~~~a~~~~~~E 30 (103)
T 2k1e_A 4 HEREAQKAEEELQKVLEEASKKAVEAE 30 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 444555555566666666666554443
No 10
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*
Probab=23.69 E-value=17 Score=27.35 Aligned_cols=26 Identities=0% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccccch
Q 034421 57 IILIVTLVALILVYLIGCCAFRNDKT 82 (95)
Q Consensus 57 i~niv~lv~Li~vy~vGCca~rn~r~ 82 (95)
++.++.++|++++..+++|.+...|+
T Consensus 342 ~~~~i~~~~~~~~~l~~~~~~~~k~~ 367 (380)
T 3lb6_C 342 LRFWLPFGFILILVIFVTGLLLRKPN 367 (380)
T ss_dssp --------------------------
T ss_pred EEEEhHHHHHHHHHHHHHHHHHhcch
Confidence 33344445555566666777765554
No 11
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=20.88 E-value=91 Score=20.35 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 034421 55 VDIILIVTLVALILVYLIGC 74 (95)
Q Consensus 55 ~ai~niv~lv~Li~vy~vGC 74 (95)
++++.+..+++++..|.+|=
T Consensus 34 AAv~fl~~~~~lv~l~~iG~ 53 (82)
T 2nrg_A 34 AGGVFFGTLLLIGFFRVVGR 53 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777777888888888884
No 12
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=20.86 E-value=97 Score=17.33 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034421 54 RVDIILIVTLVALILVYLI 72 (95)
Q Consensus 54 ~~ai~niv~lv~Li~vy~v 72 (95)
.++++.-++.++||+.|-.
T Consensus 9 ~lan~lG~~~~~LIVlYH~ 27 (37)
T 2lat_A 9 IFANMLGVSLFLLVVLYHY 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777743
No 13
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=20.26 E-value=97 Score=23.92 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=21.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 034421 46 ANLKKEWRRVDIILIVTLVALILVYLIGCCA 76 (95)
Q Consensus 46 ~~lk~~Wr~~ai~niv~lv~Li~vy~vGCca 76 (95)
..++..|+.+.++.+++++++++++++...+
T Consensus 54 ~~l~~~~~~ll~~~~~~~l~~~l~fally~~ 84 (333)
T 1p7b_A 54 WALKVSWPVFFASLAALFVVNNTLFALLYQL 84 (333)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468889998887777777766666665433
Done!