Query 034421
Match_columns 95
No_of_seqs 102 out of 153
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 03:39:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034421.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034421hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oeda_ f.36.1.1 (A:) Acetylch 54.3 2.3 0.00017 28.2 1.4 30 47-76 184-217 (227)
2 d2axtm1 f.23.35.1 (M:1-36) Pho 40.4 19 0.0014 19.0 3.5 17 56-72 12-28 (36)
3 d1oedc_ f.36.1.1 (C:) Acetylch 39.8 4.1 0.0003 27.0 0.8 14 46-59 216-229 (260)
4 d1oede_ f.36.1.1 (E:) Acetylch 35.0 7.2 0.00053 25.9 1.5 12 46-57 216-227 (260)
5 d1m56d_ f.23.8.1 (D:) Bacteria 28.4 24 0.0017 19.2 2.7 13 56-68 27-39 (42)
6 d1qled_ f.23.8.1 (D:) Bacteria 26.9 20 0.0014 19.6 2.2 14 55-68 27-40 (43)
7 d1v54g_ f.23.2.1 (G:) Mitochon 20.9 37 0.0027 20.5 2.9 22 50-71 14-35 (84)
8 d1oedb_ f.36.1.1 (B:) Acetylch 19.8 30 0.0022 22.5 2.4 12 47-58 207-218 (250)
9 d2h8pc1 f.14.1.1 (C:22-78) Pot 18.6 51 0.0037 18.2 2.9 17 51-67 4-20 (57)
10 d1vj0a1 b.35.1.2 (A:2-155,A:33 16.9 12 0.00085 24.5 -0.3 14 31-44 96-109 (184)
No 1
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=54.26 E-value=2.3 Score=28.24 Aligned_cols=30 Identities=20% Similarity=0.527 Sum_probs=9.4
Q ss_pred HHHhhhhHHHHH----HHHHHHHHHHHHHHhhcc
Q 034421 47 NLKKEWRRVDII----LIVTLVALILVYLIGCCA 76 (95)
Q Consensus 47 ~lk~~Wr~~ai~----niv~lv~Li~vy~vGCca 76 (95)
.++++|+.+|.+ ..++++++.+++.++..+
T Consensus 184 ~~~~eW~~vA~viDRi~~~~F~l~~ii~~i~if~ 217 (227)
T d1oeda_ 184 NAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFA 217 (227)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346689999852 223333334455555444
No 2
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=40.41 E-value=19 Score=18.97 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034421 56 DIILIVTLVALILVYLI 72 (95)
Q Consensus 56 ai~niv~lv~Li~vy~v 72 (95)
+.|-++=.+||++.|.-
T Consensus 12 ~LFilvPt~FLliLyvq 28 (36)
T d2axtm1 12 ALFVLVPSVFLIILYVQ 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhee
Confidence 45555666888888864
No 3
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=39.76 E-value=4.1 Score=27.00 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=1.9
Q ss_pred HHHHhhhhHHHHHH
Q 034421 46 ANLKKEWRRVDIIL 59 (95)
Q Consensus 46 ~~lk~~Wr~~ai~n 59 (95)
+.+++||+.+|.+-
T Consensus 216 ~~~~~EWk~vA~Vi 229 (260)
T d1oedc_ 216 DEEVGNWNLVGQTI 229 (260)
T ss_dssp ----------CCSH
T ss_pred HHHHHHHHHHHHHH
Confidence 44667899886543
No 4
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=35.05 E-value=7.2 Score=25.90 Aligned_cols=12 Identities=8% Similarity=0.351 Sum_probs=1.0
Q ss_pred HHHHhhhhHHHH
Q 034421 46 ANLKKEWRRVDI 57 (95)
Q Consensus 46 ~~lk~~Wr~~ai 57 (95)
+.+++||+.+|.
T Consensus 216 ~~~~~eW~~vA~ 227 (260)
T d1oede_ 216 GSENENWVLIGK 227 (260)
T ss_dssp ----------CC
T ss_pred HHHHHHHHHHHH
Confidence 456778987754
No 5
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=28.42 E-value=24 Score=19.15 Aligned_cols=13 Identities=23% Similarity=0.628 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 034421 56 DIILIVTLVALIL 68 (95)
Q Consensus 56 ai~niv~lv~Li~ 68 (95)
+|+.|++++||-+
T Consensus 27 ~i~~i~~liflAi 39 (42)
T d1m56d_ 27 AVVIVAALIFLAL 39 (42)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555543
No 6
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=26.85 E-value=20 Score=19.57 Aligned_cols=14 Identities=50% Similarity=0.596 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 034421 55 VDIILIVTLVALIL 68 (95)
Q Consensus 55 ~ai~niv~lv~Li~ 68 (95)
.+|+.|++++||-+
T Consensus 27 ~~i~~i~~liflAi 40 (43)
T d1qled_ 27 VSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35555555555543
No 7
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.90 E-value=37 Score=20.46 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 034421 50 KEWRRVDIILIVTLVALILVYL 71 (95)
Q Consensus 50 ~~Wr~~ai~niv~lv~Li~vy~ 71 (95)
+-||+++++-++-.++|..+.+
T Consensus 14 ~lWkkis~~va~P~i~l~~~n~ 35 (84)
T d1v54g_ 14 RTWRFLTFGLALPSVALCTLNS 35 (84)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999877666666555544
No 8
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=19.84 E-value=30 Score=22.50 Aligned_cols=12 Identities=42% Similarity=1.052 Sum_probs=1.6
Q ss_pred HHHhhhhHHHHH
Q 034421 47 NLKKEWRRVDII 58 (95)
Q Consensus 47 ~lk~~Wr~~ai~ 58 (95)
.+++||+.+|.+
T Consensus 207 ~~~~EW~~vA~V 218 (250)
T d1oedb_ 207 DLKKDWQYVAMV 218 (250)
T ss_dssp ---------CHH
T ss_pred HHHHHHHHHHHH
Confidence 345689988654
No 9
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=18.63 E-value=51 Score=18.22 Aligned_cols=17 Identities=18% Similarity=0.616 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHHHHHH
Q 034421 51 EWRRVDIILIVTLVALI 67 (95)
Q Consensus 51 ~Wr~~ai~niv~lv~Li 67 (95)
+||.+....++++++++
T Consensus 4 ~~R~~~~~~~~~~i~i~ 20 (57)
T d2h8pc1 4 HWRAAGAATVLLVIVLL 20 (57)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57777665554444443
No 10
>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}
Probab=16.88 E-value=12 Score=24.54 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=11.6
Q ss_pred CcceecCcchhhHH
Q 034421 31 MQLCYNCDSCKAGL 44 (95)
Q Consensus 31 ~~LCy~CdSCKAGv 44 (95)
..-|.+|+.|+.|-
T Consensus 96 ~~~Cg~C~~C~~g~ 109 (184)
T d1vj0a1 96 GITCGECYWCKVSK 109 (184)
T ss_dssp EECCSSSHHHHTSC
T ss_pred ccccccChhHhCcc
Confidence 35799999999885
Done!