BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034422
(95 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ING|A Chain A, Crystal Structure Of Homoserine Dehydrogenase
(Np_394635.1) From Thermoplasma Acidophilum At 1.95 A
Resolution
Length = 325
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS 49
K+I +L G G VG +L+ I + + + +VVGVSDS+S
Sbjct: 3 KEIRIILXGTGNVGLNVLRIIDASNRRRSAFSI--KVVGVSDSRS 45
>pdb|3HCW|A Chain A, Crystal Structure Of Probable Maltose Operon
Transcriptional Repressor Malr From Staphylococcus Areus
pdb|3HCW|B Chain B, Crystal Structure Of Probable Maltose Operon
Transcriptional Repressor Malr From Staphylococcus Areus
Length = 295
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 37 VHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEI 69
+HL ++ V ++ + DV T FND+ L+EI
Sbjct: 203 LHLAILSVLYELNIEIPKDVMTATFNDSYLTEI 235
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 15 GGVGRQLL--QHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTK--EFNDNLLSEIC 70
GGV + L +++ + R ANL H+ +G + VVA + F E NLL E+C
Sbjct: 341 GGVPKSDLATENLEALREGFANLEKHIENIGKFGVPA-VVAINAFPTDTEAELNLLYELC 399
Query: 71 RLKAGHSSLSTLIGGFGG 88
+LS GG GG
Sbjct: 400 AKAGAEVALSWAKGGEGG 417
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
Length = 557
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 15 GGVGRQLL--QHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTK--EFNDNLLSEIC 70
GGV + L +++ + R ANL H+ +G + VVA + F E NLL E+C
Sbjct: 341 GGVPKSDLATENLEALREGFANLEKHIENIGKFGVPA-VVAINAFPTDTEAELNLLYELC 399
Query: 71 RLKAGHSSLSTLIGGFGG 88
+LS GG GG
Sbjct: 400 AKAGAEVALSWAKGGEGG 417
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 23 QHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLK 73
+ +V+ HA HL+ G + A++VFT EF NLL+E +L+
Sbjct: 163 REVVALMGAHALGKTHLKNSGYEGPQG--AANNVFTNEFYLNLLNEDWKLE 211
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 23 QHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLK 73
+ +V+ HA HL+ G + A++VFT EF NLL+E +L+
Sbjct: 168 REVVALMGAHALGKTHLKNSGYEGPQG--AANNVFTNEFYLNLLNEDWKLE 216
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 23 QHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLK 73
+ +V+ + HA HL+ G A++VFT EF NLL+E +L+
Sbjct: 163 REVVALKGAHALGKTHLKNSGYEGPWG--AANNVFTNEFYLNLLNEDWKLE 211
>pdb|3K4H|A Chain A, Crystal Structure Of Putative Transcriptional Regulator
Laci From Bacillus Cereus Subsp. Cytotoxis Nvh 391-98
pdb|3K4H|B Chain B, Crystal Structure Of Putative Transcriptional Regulator
Laci From Bacillus Cereus Subsp. Cytotoxis Nvh 391-98
Length = 292
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 37 VHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEI 69
+ L V+ K VV DV FN+ LLSEI
Sbjct: 203 IGLGVLSALSKKGFVVPKDVSIVSFNNALLSEI 235
>pdb|1M6Y|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam-
Dependent Methyltransferase, Complexed With Sah
pdb|1M6Y|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam-
Dependent Methyltransferase, Complexed With Sah
pdb|1N2X|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam-
Dependent Methyltransferase, Complexed With Sam
pdb|1N2X|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam-
Dependent Methyltransferase, Complexed With Sam
Length = 301
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 13/62 (20%)
Query: 5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVS-DSKSLVVASDVFTKEFND 63
K I +G GG R +L+H C R++G+ DS+ L +A + KEF+D
Sbjct: 28 KIILDCTVGEGGHSRAILEHCPGC-----------RIIGIDVDSEVLRIAEEKL-KEFSD 75
Query: 64 NL 65
+
Sbjct: 76 RV 77
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 23 QHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLK 73
+ +V+ HA HL+ G A++VFT EF NLL+E +L+
Sbjct: 166 REVVALMGAHALGKTHLKNSGYEGPGG--AANNVFTNEFYLNLLNEDWKLE 214
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 23 QHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLK 73
+ +V+ HA HL+ G A++VFT EF NLL+E +L+
Sbjct: 166 REVVALMGAHALGKTHLKNSGYEGPGG--AANNVFTNEFYLNLLNEDWKLE 214
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 23 QHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLK 73
+ +V+ HA HL+ G A++VFT EF NLL+E +L+
Sbjct: 164 REVVALMGAHALGKTHLKNSGYEGPGG--AANNVFTNEFYLNLLNEDWKLE 212
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 23 QHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLK 73
+ +V+ HA HL+ G A++VFT EF NLL+E +L+
Sbjct: 166 REVVALMGAHALGKTHLKNSGYEGPGG--AANNVFTNEFYLNLLNEDWKLE 214
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 23 QHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLK 73
+ +V+ HA HL+ G A++VFT EF NLL+E +L+
Sbjct: 168 REVVALMGAHALGKTHLKNSGYEGPGG--AANNVFTNEFYLNLLNEDWKLE 216
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 23 QHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLK 73
+ +V+ HA HL+ G A++VFT EF NLL+E +L+
Sbjct: 163 REVVALMGAHALGKTHLKNSGYEGPGG--AANNVFTNEFYLNLLNEDWKLE 211
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 25.0 bits (53), Expect = 9.7, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 23 QHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLK 73
+ +V+ HA HL+ G A++VFT EF NLL+E +L+
Sbjct: 163 REVVALMGAHALGKTHLKNSGYEGPYG--AANNVFTNEFYLNLLNEDWKLE 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,625,491
Number of Sequences: 62578
Number of extensions: 85270
Number of successful extensions: 286
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 22
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)