BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034422
         (95 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6P5U7|K1239_MOUSE Leucine-rich repeat and WD repeat-containing protein KIAA1239 OS=Mus
            musculus GN=Kiaa1239 PE=2 SV=2
          Length = 1742

 Score = 33.1 bits (74), Expect = 0.51,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 10/72 (13%)

Query: 19   RQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDN----LLSEICRLKA 74
            RQLL+ I + +S+   LG+ L     SD K LVVA+   T    DN    LLSE+     
Sbjct: 999  RQLLRQITTAQSV--ILGMKLS----SDEKYLVVATTNNTLLIYDNVNSCLLSEVEIKGT 1052

Query: 75   GHSSLSTLIGGF 86
             H S ST I GF
Sbjct: 1053 KHGSGSTYINGF 1064


>sp|Q9ULI1|K1239_HUMAN Leucine-rich repeat and WD repeat-containing protein KIAA1239 OS=Homo
            sapiens GN=KIAA1239 PE=2 SV=3
          Length = 1742

 Score = 32.7 bits (73), Expect = 0.65,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 10/72 (13%)

Query: 19   RQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDN----LLSEICRLKA 74
            RQLL+ I + +S+   LG+ L     SD K LVVA+   T    DN    LLSE+     
Sbjct: 999  RQLLRQITTAQSV--ILGMKL----TSDEKYLVVATTNNTLLIYDNVNSCLLSEVEIKGT 1052

Query: 75   GHSSLSTLIGGF 86
             H S +T I GF
Sbjct: 1053 KHGSSATYINGF 1064


>sp|P57290|AKH_BUCAI Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera
           aphidicola subsp. Acyrthosiphon pisum (strain APS)
           GN=thrA PE=3 SV=1
          Length = 816

 Score = 31.2 bits (69), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 14/91 (15%)

Query: 5   KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDV-------- 56
           K I   L+G GG+G  LL  I+  +       + +++  +++SK +++  +         
Sbjct: 465 KTIHMFLIGIGGIGSTLLNQILKQKQFLDKKNIEIKICAIANSKKILLLDNTNDLSNWKN 524

Query: 57  ----FTKEFNDNLLSEICRLKAGHSSLSTLI 83
                T++FN  LL+ +  +K  H S S ++
Sbjct: 525 DFKKSTQKFNLELLNNL--IKNNHFSNSVIV 553


>sp|Q8N5I4|DHRSX_HUMAN Dehydrogenase/reductase SDR family member on chromosome X OS=Homo
           sapiens GN=DHRSX PE=2 SV=2
          Length = 330

 Score = 31.2 bits (69), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 6   KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNL 65
           ++  V  G  G+G    +H+       A LG+H+ + G +DSK+  V S +  +  ND +
Sbjct: 44  RVAIVTGGTDGIGYSTAKHL-------ARLGMHVIIAGNNDSKAKQVVSKIKEETLNDKV 96

Query: 66  LSEICRLKAGHSSLSTLIGGF 86
               C L A  +S+   +  F
Sbjct: 97  EFLYCDL-ASMTSIRQFVQKF 116


>sp|Q89AR4|AKH_BUCBP Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera
           aphidicola subsp. Baizongia pistaciae (strain Bp)
           GN=thrA PE=3 SV=1
          Length = 816

 Score = 30.0 bits (66), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 28/45 (62%)

Query: 11  LMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASD 55
           L+G G VG+  L+ I+  ++   +  + L++ G+++SK+ ++  D
Sbjct: 471 LIGIGRVGQTFLKQIIEQKNWLKSKNIDLKICGIANSKNFILNLD 515


>sp|P03754|EA59_LAMBD Protein ea59 OS=Enterobacteria phage lambda GN=ea59 PE=4 SV=1
          Length = 525

 Score = 29.3 bits (64), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 52  VASDVFTKEFNDNLLSEICRLKAGHS----SLSTLIGGFGGNPLILY 94
           V  D FTK F DN+   + R+ +GH+    +++ L+   G   L+L+
Sbjct: 344 VDDDKFTKLFYDNIQKYLLRMSSGHAIVLFTITRLVDVVGEKSLVLF 390


>sp|Q9VQ26|RB3GP_DROME Rab3 GTPase-activating protein catalytic subunit OS=Drosophila
           melanogaster GN=CG31935 PE=1 SV=2
          Length = 916

 Score = 29.3 bits (64), Expect = 7.7,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 24  HIVSCRSLHA--NLGV----HLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHS 77
           H +  R +H   NL V    H  ++ ++D  S     D+F+ +  + LLS++CRL   HS
Sbjct: 723 HYLETRKMHEIYNLTVIPLLHSAILKLADILSNAELEDLFSSQI-EKLLSDLCRLSRSHS 781


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.140    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,228,643
Number of Sequences: 539616
Number of extensions: 1118745
Number of successful extensions: 2796
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2792
Number of HSP's gapped (non-prelim): 10
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)