Query 034422
Match_columns 95
No_of_seqs 104 out of 190
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 02:41:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02700 homoserine dehydrogen 99.7 1.9E-17 4.1E-22 133.9 8.5 79 4-82 1-79 (377)
2 PRK08374 homoserine dehydrogen 99.5 9.1E-14 2E-18 109.7 7.7 72 6-84 2-74 (336)
3 PRK06392 homoserine dehydrogen 99.4 7.4E-13 1.6E-17 104.9 6.8 58 7-69 1-58 (326)
4 KOG0455 Homoserine dehydrogena 99.3 1.1E-12 2.3E-17 104.5 5.5 68 4-71 1-68 (364)
5 PRK09466 metL bifunctional asp 99.3 9.3E-12 2E-16 108.4 7.7 70 2-75 454-524 (810)
6 PRK06813 homoserine dehydrogen 99.2 1.4E-11 3.1E-16 98.6 6.6 60 6-69 2-62 (346)
7 PRK06270 homoserine dehydrogen 99.2 4E-11 8.8E-16 94.5 7.6 60 6-69 2-62 (341)
8 PRK09436 thrA bifunctional asp 99.2 2.8E-11 6.1E-16 105.1 7.0 65 4-72 463-527 (819)
9 cd01076 NAD_bind_1_Glu_DH NAD( 99.2 5.3E-11 1.1E-15 89.9 6.1 66 3-84 28-93 (227)
10 COG0460 ThrA Homoserine dehydr 99.0 4.6E-10 1E-14 90.2 6.0 50 4-53 1-51 (333)
11 cd05313 NAD_bind_2_Glu_DH NAD( 99.0 1.3E-09 2.9E-14 84.4 6.1 71 4-87 36-107 (254)
12 PLN02477 glutamate dehydrogena 99.0 1.3E-09 2.7E-14 89.3 6.0 65 4-84 204-268 (410)
13 cd05211 NAD_bind_Glu_Leu_Phe_V 98.9 2.4E-09 5.2E-14 80.5 5.6 64 3-83 20-83 (217)
14 PRK09414 glutamate dehydrogena 98.9 1.8E-09 3.9E-14 89.3 5.2 68 4-87 230-298 (445)
15 PRK06349 homoserine dehydrogen 98.4 4.9E-07 1.1E-11 73.4 5.5 47 4-50 1-48 (426)
16 PRK14030 glutamate dehydrogena 98.4 6.5E-07 1.4E-11 74.4 6.1 64 4-80 226-289 (445)
17 PF00208 ELFV_dehydrog: Glutam 98.4 4.2E-07 9.1E-12 69.5 4.0 64 4-83 30-94 (244)
18 PTZ00079 NADP-specific glutama 98.3 1.1E-06 2.3E-11 73.3 6.4 68 4-84 235-303 (454)
19 PF03447 NAD_binding_3: Homose 98.2 2.5E-06 5.3E-11 57.0 4.0 36 13-54 1-36 (117)
20 PRK14031 glutamate dehydrogena 98.1 4.4E-06 9.5E-11 69.4 5.9 70 4-86 226-296 (444)
21 COG0334 GdhA Glutamate dehydro 98.0 7.6E-06 1.7E-10 67.7 5.1 63 5-83 206-268 (411)
22 KOG2250 Glutamate/leucine/phen 97.8 5.3E-05 1.1E-09 64.2 5.6 66 5-86 250-315 (514)
23 PTZ00324 glutamate dehydrogena 97.2 0.00053 1.1E-08 62.1 5.5 58 5-81 662-721 (1002)
24 PRK13302 putative L-aspartate 96.9 0.0012 2.5E-08 50.9 4.0 41 1-48 1-41 (271)
25 TIGR01921 DAP-DH diaminopimela 96.7 0.0015 3.2E-08 52.6 3.5 37 4-48 1-37 (324)
26 PF01408 GFO_IDH_MocA: Oxidore 95.7 0.015 3.3E-07 37.9 3.5 36 7-49 1-36 (120)
27 PF01113 DapB_N: Dihydrodipico 95.6 0.016 3.5E-07 39.6 3.6 35 7-49 1-36 (124)
28 PF00044 Gp_dh_N: Glyceraldehy 95.3 0.023 5E-07 40.9 3.7 33 7-47 1-33 (151)
29 PLN02358 glyceraldehyde-3-phos 95.3 0.025 5.5E-07 45.6 4.1 38 1-47 1-38 (338)
30 PRK04207 glyceraldehyde-3-phos 95.2 0.019 4.1E-07 45.7 3.1 34 7-48 2-35 (341)
31 PRK08300 acetaldehyde dehydrog 95.2 0.021 4.5E-07 45.6 3.2 37 3-47 1-37 (302)
32 PRK13303 L-aspartate dehydroge 94.8 0.031 6.8E-07 42.8 3.2 22 7-28 2-23 (265)
33 smart00846 Gp_dh_N Glyceraldeh 94.8 0.029 6.3E-07 40.1 2.8 32 7-46 1-32 (149)
34 PF01118 Semialdhyde_dh: Semia 94.7 0.036 7.7E-07 37.3 3.0 34 8-49 1-35 (121)
35 COG0673 MviM Predicted dehydro 94.6 0.04 8.6E-07 41.7 3.5 39 4-49 1-40 (342)
36 COG2344 AT-rich DNA-binding pr 94.4 0.026 5.6E-07 43.5 1.9 54 5-67 83-136 (211)
37 PLN03096 glyceraldehyde-3-phos 94.2 0.04 8.6E-07 45.6 2.7 34 7-46 61-94 (395)
38 PRK00048 dihydrodipicolinate r 94.0 0.054 1.2E-06 41.2 3.0 35 7-49 2-37 (257)
39 COG1712 Predicted dinucleotide 93.8 0.077 1.7E-06 41.9 3.7 35 7-48 1-35 (255)
40 PRK13304 L-aspartate dehydroge 93.7 0.081 1.7E-06 40.4 3.5 36 7-49 2-37 (265)
41 COG0057 GapA Glyceraldehyde-3- 93.7 0.068 1.5E-06 43.6 3.2 33 7-46 2-34 (335)
42 PTZ00434 cytosolic glyceraldeh 93.1 0.12 2.6E-06 42.4 3.8 40 4-47 1-40 (361)
43 PRK13301 putative L-aspartate 93.0 0.098 2.1E-06 41.4 3.0 38 6-49 2-39 (267)
44 PRK13535 erythrose 4-phosphate 93.0 0.12 2.7E-06 41.7 3.6 35 7-46 2-36 (336)
45 TIGR00036 dapB dihydrodipicoli 92.9 0.12 2.6E-06 39.7 3.3 33 7-47 2-35 (266)
46 PRK05472 redox-sensing transcr 92.9 0.082 1.8E-06 38.9 2.4 39 3-48 81-119 (213)
47 TIGR01532 E4PD_g-proteo D-eryt 92.6 0.16 3.4E-06 40.7 3.8 34 8-46 1-34 (325)
48 cd00755 YgdL_like Family of ac 92.5 0.051 1.1E-06 41.4 0.8 26 2-27 7-32 (231)
49 PTZ00023 glyceraldehyde-3-phos 92.3 0.15 3.3E-06 41.2 3.4 32 7-46 3-34 (337)
50 TIGR01546 GAPDH-II_archae glyc 92.2 0.15 3.3E-06 41.2 3.2 31 9-47 1-31 (333)
51 PF00899 ThiF: ThiF family; I 91.7 0.088 1.9E-06 35.8 1.2 23 6-28 2-24 (135)
52 PF03807 F420_oxidored: NADP o 91.6 0.12 2.7E-06 32.6 1.7 22 8-29 1-22 (96)
53 PRK07236 hypothetical protein; 91.6 0.21 4.6E-06 38.9 3.3 36 1-43 1-36 (386)
54 PRK07729 glyceraldehyde-3-phos 91.6 0.18 3.9E-06 41.0 3.0 32 7-46 3-34 (343)
55 PRK15425 gapA glyceraldehyde-3 91.6 0.21 4.5E-06 40.4 3.4 32 7-46 3-34 (331)
56 PRK07634 pyrroline-5-carboxyla 91.6 0.12 2.6E-06 37.8 1.9 24 4-27 2-25 (245)
57 TIGR03736 PRTRC_ThiF PRTRC sys 91.5 0.12 2.7E-06 39.9 2.0 24 5-28 10-33 (244)
58 PRK05671 aspartate-semialdehyd 91.4 0.24 5.3E-06 39.6 3.6 26 1-28 1-27 (336)
59 PRK15116 sulfur acceptor prote 91.4 0.09 2E-06 41.1 1.1 26 2-27 26-51 (268)
60 PLN02237 glyceraldehyde-3-phos 91.3 0.28 6E-06 41.3 3.9 36 4-46 74-109 (442)
61 PRK08773 2-octaprenyl-3-methyl 91.3 0.25 5.5E-06 38.4 3.5 27 1-27 1-27 (392)
62 cd01483 E1_enzyme_family Super 91.1 0.17 3.8E-06 34.5 2.1 20 8-27 1-20 (143)
63 PF10727 Rossmann-like: Rossma 91.0 0.14 3.1E-06 35.9 1.7 34 5-47 9-42 (127)
64 PLN02272 glyceraldehyde-3-phos 90.8 0.3 6.4E-06 40.9 3.7 33 7-47 86-118 (421)
65 TIGR03215 ac_ald_DH_ac acetald 90.7 0.28 6E-06 38.7 3.2 32 7-46 2-33 (285)
66 PTZ00353 glycosomal glyceralde 90.6 0.27 5.9E-06 40.0 3.1 32 7-46 3-34 (342)
67 PRK11579 putative oxidoreducta 90.5 0.3 6.5E-06 38.0 3.2 35 6-48 4-39 (346)
68 cd00757 ThiF_MoeB_HesA_family 90.3 0.17 3.6E-06 37.7 1.6 25 3-27 18-42 (228)
69 TIGR02356 adenyl_thiF thiazole 90.2 0.14 3E-06 37.7 1.1 25 3-27 18-42 (202)
70 PRK07403 glyceraldehyde-3-phos 89.9 0.42 9.1E-06 38.8 3.7 34 7-46 2-35 (337)
71 PRK00436 argC N-acetyl-gamma-g 89.7 0.4 8.7E-06 38.0 3.4 33 7-47 3-36 (343)
72 PRK08644 thiamine biosynthesis 89.5 0.15 3.3E-06 38.0 0.9 25 3-27 25-49 (212)
73 PRK07679 pyrroline-5-carboxyla 89.3 0.24 5.2E-06 37.6 1.8 25 4-28 1-25 (279)
74 PRK07502 cyclohexadienyl dehyd 89.0 0.33 7.2E-06 37.2 2.4 27 1-27 1-27 (307)
75 PRK08328 hypothetical protein; 88.9 0.17 3.8E-06 38.0 0.8 25 3-27 24-48 (231)
76 PRK06153 hypothetical protein; 88.6 0.27 6E-06 40.8 1.8 24 4-27 174-197 (393)
77 TIGR01534 GAPDH-I glyceraldehy 88.6 0.68 1.5E-05 37.3 4.0 33 8-46 1-33 (327)
78 TIGR02354 thiF_fam2 thiamine b 88.6 0.19 4.2E-06 37.2 0.9 25 3-27 18-42 (200)
79 PTZ00431 pyrroline carboxylate 88.1 0.32 6.9E-06 36.8 1.8 24 5-28 2-25 (260)
80 PRK05732 2-octaprenyl-6-methox 88.1 0.53 1.2E-05 36.2 3.0 25 4-28 1-25 (395)
81 PRK08013 oxidoreductase; Provi 87.9 0.6 1.3E-05 36.7 3.3 24 4-27 1-24 (400)
82 cd01075 NAD_bind_Leu_Phe_Val_D 87.7 0.36 7.8E-06 35.5 1.8 24 4-27 26-49 (200)
83 cd01487 E1_ThiF_like E1_ThiF_l 87.5 0.44 9.6E-06 34.3 2.2 20 8-27 1-20 (174)
84 PRK08850 2-octaprenyl-6-methox 87.5 0.65 1.4E-05 36.5 3.3 32 4-42 2-33 (405)
85 PRK08289 glyceraldehyde-3-phos 87.2 1.3 2.8E-05 37.9 5.0 41 5-49 126-166 (477)
86 PF02826 2-Hacid_dh_C: D-isome 87.0 0.39 8.4E-06 34.3 1.6 35 7-50 37-71 (178)
87 cd01485 E1-1_like Ubiquitin ac 86.9 0.38 8.3E-06 35.4 1.5 24 4-27 17-40 (198)
88 cd01491 Ube1_repeat1 Ubiquitin 86.5 0.29 6.3E-06 38.6 0.8 27 1-27 14-40 (286)
89 TIGR02355 moeB molybdopterin s 86.5 0.42 9.2E-06 36.3 1.6 25 3-27 21-45 (240)
90 TIGR01850 argC N-acetyl-gamma- 86.4 0.6 1.3E-05 37.2 2.5 34 7-48 1-35 (346)
91 PRK06184 hypothetical protein; 86.1 0.83 1.8E-05 37.2 3.3 32 4-42 1-32 (502)
92 PRK08849 2-octaprenyl-3-methyl 86.1 0.87 1.9E-05 35.6 3.3 24 4-27 1-24 (384)
93 PRK07878 molybdopterin biosynt 86.0 0.33 7.1E-06 39.3 0.9 25 3-27 39-63 (392)
94 PF02629 CoA_binding: CoA bind 86.0 0.88 1.9E-05 29.5 2.8 43 5-55 2-44 (96)
95 COG3804 Uncharacterized conser 85.9 0.6 1.3E-05 38.3 2.3 44 6-57 2-45 (350)
96 PRK06249 2-dehydropantoate 2-r 85.8 0.98 2.1E-05 34.8 3.4 24 4-27 3-26 (313)
97 PF09363 XFP_C: XFP C-terminal 85.7 3.6 7.8E-05 31.6 6.3 59 7-69 35-95 (203)
98 PRK06185 hypothetical protein; 85.6 1.1 2.4E-05 34.8 3.6 27 1-27 1-27 (407)
99 COG1179 Dinucleotide-utilizing 85.4 0.45 9.8E-06 37.8 1.4 25 3-27 27-51 (263)
100 TIGR03450 mycothiol_INO1 inosi 85.3 1.9 4E-05 35.6 4.9 54 7-67 1-68 (351)
101 PRK08955 glyceraldehyde-3-phos 85.3 1.1 2.4E-05 36.2 3.5 32 7-46 3-34 (334)
102 PLN02602 lactate dehydrogenase 85.2 0.57 1.2E-05 37.8 1.9 21 7-27 38-58 (350)
103 PRK07688 thiamine/molybdopteri 85.1 0.55 1.2E-05 37.5 1.8 25 3-27 21-45 (339)
104 cd05312 NAD_bind_1_malic_enz N 85.0 1.8 4E-05 34.3 4.6 49 3-54 22-74 (279)
105 PRK07494 2-octaprenyl-6-methox 84.8 1.1 2.3E-05 34.7 3.2 25 3-27 4-28 (388)
106 PRK08223 hypothetical protein; 84.7 0.42 9E-06 38.0 0.9 24 3-26 24-47 (287)
107 PRK12475 thiamine/molybdopteri 84.5 0.61 1.3E-05 37.2 1.8 25 3-27 21-45 (338)
108 PRK11863 N-acetyl-gamma-glutam 84.5 1.2 2.6E-05 35.6 3.4 39 6-52 2-41 (313)
109 PF13460 NAD_binding_10: NADH( 84.4 1.3 2.8E-05 30.4 3.2 32 9-49 1-33 (183)
110 PF03446 NAD_binding_2: NAD bi 84.3 1.6 3.5E-05 30.5 3.7 20 8-27 3-22 (163)
111 PRK05690 molybdopterin biosynt 84.3 0.61 1.3E-05 35.4 1.6 24 4-27 30-53 (245)
112 cd01484 E1-2_like Ubiquitin ac 84.1 0.77 1.7E-05 35.1 2.1 20 8-27 1-20 (234)
113 cd01488 Uba3_RUB Ubiquitin act 84.1 0.78 1.7E-05 36.4 2.2 20 8-27 1-20 (291)
114 PF02254 TrkA_N: TrkA-N domain 84.1 0.85 1.8E-05 29.5 2.0 20 9-28 1-20 (116)
115 COG2085 Predicted dinucleotide 83.7 0.98 2.1E-05 34.7 2.5 20 9-28 4-23 (211)
116 PRK05447 1-deoxy-D-xylulose 5- 83.7 1.4 3E-05 36.6 3.5 34 8-48 3-38 (385)
117 PRK08762 molybdopterin biosynt 83.6 0.49 1.1E-05 37.8 0.9 25 3-27 132-156 (376)
118 cd01492 Aos1_SUMO Ubiquitin ac 83.3 0.67 1.4E-05 34.1 1.4 25 3-27 18-42 (197)
119 PLN02545 3-hydroxybutyryl-CoA 83.3 1.1 2.4E-05 34.1 2.6 25 1-27 1-25 (295)
120 PRK05597 molybdopterin biosynt 83.1 0.51 1.1E-05 37.7 0.8 25 3-27 25-49 (355)
121 PRK12825 fabG 3-ketoacyl-(acyl 83.1 1 2.2E-05 31.6 2.2 27 1-27 1-28 (249)
122 PRK07411 hypothetical protein; 83.0 0.73 1.6E-05 37.4 1.7 25 3-27 35-59 (390)
123 PF00056 Ldh_1_N: lactate/mala 82.8 0.84 1.8E-05 31.8 1.7 22 7-28 1-23 (141)
124 PRK06476 pyrroline-5-carboxyla 82.7 1.6 3.4E-05 32.6 3.3 20 8-27 2-21 (258)
125 PRK11880 pyrroline-5-carboxyla 82.5 0.9 2E-05 33.8 1.9 21 8-28 4-24 (267)
126 cd05191 NAD_bind_amino_acid_DH 82.3 1.4 3.1E-05 27.8 2.5 25 5-29 22-46 (86)
127 cd05311 NAD_bind_2_malic_enz N 82.1 2.2 4.7E-05 32.1 3.8 43 4-53 23-65 (226)
128 PRK11259 solA N-methyltryptoph 82.1 1.8 4E-05 33.0 3.5 25 4-28 1-25 (376)
129 cd01489 Uba2_SUMO Ubiquitin ac 81.9 1.1 2.3E-05 35.9 2.2 19 8-26 1-19 (312)
130 PRK08132 FAD-dependent oxidore 81.7 1.8 3.9E-05 35.7 3.5 35 1-42 18-52 (547)
131 PLN00198 anthocyanidin reducta 81.6 2.2 4.7E-05 32.5 3.7 22 7-28 10-32 (338)
132 PRK08664 aspartate-semialdehyd 81.4 0.95 2.1E-05 35.9 1.8 24 4-27 1-25 (349)
133 PRK09126 hypothetical protein; 81.1 1.9 4.2E-05 33.3 3.3 24 4-27 1-24 (392)
134 cd01490 Ube1_repeat2 Ubiquitin 81.0 1.2 2.5E-05 37.4 2.2 20 8-27 1-20 (435)
135 PLN02256 arogenate dehydrogena 80.4 1.2 2.7E-05 35.0 2.0 25 3-27 33-57 (304)
136 COG1748 LYS9 Saccharopine dehy 79.9 1.3 2.9E-05 36.6 2.2 22 8-29 3-24 (389)
137 TIGR01761 thiaz-red thiazoliny 79.7 1.9 4.1E-05 34.7 3.0 37 5-49 2-38 (343)
138 PF01210 NAD_Gly3P_dh_N: NAD-d 79.6 1.3 2.8E-05 31.0 1.8 22 8-29 1-22 (157)
139 PF00070 Pyr_redox: Pyridine n 79.6 2.9 6.3E-05 25.7 3.2 29 8-43 1-29 (80)
140 COG0569 TrkA K+ transport syst 79.6 1.4 2.9E-05 33.1 2.0 21 8-28 2-22 (225)
141 PRK07806 short chain dehydroge 79.4 1.7 3.7E-05 31.0 2.4 27 1-27 1-28 (248)
142 KOG3217 Protein tyrosine phosp 79.4 13 0.00028 27.7 7.0 76 1-86 1-78 (159)
143 PRK12742 oxidoreductase; Provi 79.3 1.7 3.7E-05 30.7 2.3 28 1-28 1-29 (237)
144 TIGR03570 NeuD_NnaD sugar O-ac 79.1 3.3 7.1E-05 28.6 3.7 35 8-51 1-35 (201)
145 PRK06545 prephenate dehydrogen 79.0 2.9 6.2E-05 33.2 3.7 31 8-45 2-32 (359)
146 PRK05808 3-hydroxybutyryl-CoA 78.8 1.4 3.1E-05 33.3 1.9 20 8-27 5-24 (282)
147 PRK06126 hypothetical protein; 78.8 2.7 5.9E-05 34.5 3.7 34 3-43 4-37 (545)
148 PRK12862 malic enzyme; Reviewe 78.8 3.5 7.6E-05 36.8 4.5 54 3-65 190-243 (763)
149 cd05291 HicDH_like L-2-hydroxy 78.7 1.5 3.1E-05 34.0 2.0 20 8-27 2-21 (306)
150 PRK05600 thiamine biosynthesis 78.7 1 2.2E-05 36.5 1.1 25 3-27 38-62 (370)
151 PRK08040 putative semialdehyde 78.5 2.3 5E-05 34.2 3.1 25 4-28 2-27 (336)
152 PRK06183 mhpA 3-(3-hydroxyphen 78.4 2.8 6.1E-05 34.6 3.6 24 4-27 8-31 (538)
153 PRK14619 NAD(P)H-dependent gly 78.3 2.7 5.8E-05 32.4 3.3 22 7-28 5-26 (308)
154 PTZ00082 L-lactate dehydrogena 78.3 1.7 3.7E-05 34.4 2.2 24 4-27 4-27 (321)
155 PRK13234 nifH nitrogenase redu 78.1 4.7 0.0001 31.1 4.6 45 1-51 1-46 (295)
156 PRK05708 2-dehydropantoate 2-r 78.0 2.7 5.9E-05 32.5 3.3 21 7-27 3-23 (305)
157 PRK07045 putative monooxygenas 77.8 2.9 6.2E-05 32.5 3.4 24 4-27 3-26 (388)
158 PRK06522 2-dehydropantoate 2-r 77.8 1.6 3.5E-05 32.6 1.9 20 8-27 2-21 (304)
159 PRK11064 wecC UDP-N-acetyl-D-m 77.6 1.7 3.7E-05 35.3 2.2 22 6-27 3-24 (415)
160 cd05290 LDH_3 A subgroup of L- 77.6 1.8 3.8E-05 34.2 2.2 20 8-27 1-20 (307)
161 PRK06834 hypothetical protein; 77.6 2.6 5.6E-05 34.8 3.2 24 4-27 1-24 (488)
162 cd05293 LDH_1 A subgroup of L- 77.5 1.5 3.4E-05 34.5 1.8 22 7-28 4-25 (312)
163 PRK10206 putative oxidoreducta 77.4 1.6 3.5E-05 34.4 1.9 36 6-48 1-37 (344)
164 PRK06130 3-hydroxybutyryl-CoA 77.1 2.2 4.8E-05 32.5 2.5 25 1-27 1-25 (311)
165 PRK14851 hypothetical protein; 76.7 1.4 3.1E-05 38.6 1.5 25 3-27 40-64 (679)
166 PRK08703 short chain dehydroge 76.6 2.3 5E-05 30.4 2.4 27 1-27 1-28 (239)
167 PRK08410 2-hydroxyacid dehydro 76.3 1.7 3.8E-05 34.1 1.8 21 6-26 145-165 (311)
168 PLN02688 pyrroline-5-carboxyla 76.2 1.9 4.1E-05 32.0 1.9 20 8-27 2-21 (266)
169 PRK06487 glycerate dehydrogena 76.2 1.7 3.7E-05 34.2 1.7 19 7-25 149-167 (317)
170 PRK07066 3-hydroxybutyryl-CoA 76.0 2.3 5E-05 33.9 2.4 26 1-26 1-27 (321)
171 cd01336 MDH_cytoplasmic_cytoso 75.9 2.4 5.2E-05 33.6 2.5 40 5-45 1-42 (325)
172 PLN00112 malate dehydrogenase 75.8 2.2 4.7E-05 35.8 2.3 40 5-44 99-139 (444)
173 smart00859 Semialdhyde_dh Semi 75.8 4.1 8.9E-05 26.9 3.3 32 8-47 1-33 (122)
174 PRK15438 erythronate-4-phospha 75.7 1.9 4E-05 35.4 1.9 21 6-26 116-136 (378)
175 PRK00094 gpsA NAD(P)H-dependen 75.7 3.8 8.3E-05 30.9 3.5 20 8-27 3-22 (325)
176 TIGR00978 asd_EA aspartate-sem 75.5 2.8 6E-05 33.2 2.8 34 7-48 1-35 (341)
177 PRK12827 short chain dehydroge 75.3 2.5 5.5E-05 29.8 2.3 28 1-28 1-29 (249)
178 PF00670 AdoHcyase_NAD: S-aden 75.1 2.2 4.7E-05 31.4 2.0 20 8-27 25-44 (162)
179 PRK13243 glyoxylate reductase; 75.1 2.1 4.5E-05 33.9 2.0 21 6-26 150-170 (333)
180 PRK07680 late competence prote 75.0 2.1 4.5E-05 32.3 1.9 20 8-27 2-21 (273)
181 PRK09496 trkA potassium transp 74.9 2.1 4.5E-05 34.0 1.9 20 8-27 2-21 (453)
182 cd01486 Apg7 Apg7 is an E1-lik 74.7 2.4 5.2E-05 34.3 2.2 20 8-27 1-20 (307)
183 PRK00683 murD UDP-N-acetylmura 74.7 2.5 5.4E-05 33.9 2.3 24 4-27 1-24 (418)
184 PRK06928 pyrroline-5-carboxyla 74.5 2.2 4.8E-05 32.6 1.9 21 8-28 3-23 (277)
185 COG1927 Mtd Coenzyme F420-depe 74.4 5.2 0.00011 31.8 3.9 37 6-44 2-39 (277)
186 PRK06932 glycerate dehydrogena 74.4 2 4.3E-05 33.8 1.7 20 7-26 148-167 (314)
187 PRK08229 2-dehydropantoate 2-r 74.4 2.4 5.1E-05 32.6 2.1 20 8-27 4-23 (341)
188 PRK12491 pyrroline-5-carboxyla 74.4 2.2 4.8E-05 32.8 1.9 20 8-27 4-23 (272)
189 PRK05653 fabG 3-ketoacyl-(acyl 74.2 2.7 5.7E-05 29.5 2.1 25 3-27 2-27 (246)
190 PRK07232 bifunctional malic en 74.1 5.2 0.00011 35.8 4.3 54 3-65 182-235 (752)
191 PRK05479 ketol-acid reductoiso 74.0 3.2 6.9E-05 33.5 2.8 24 4-27 15-38 (330)
192 KOG2013 SMT3/SUMO-activating c 73.9 2.8 6E-05 36.6 2.5 23 5-27 11-33 (603)
193 PRK06847 hypothetical protein; 73.8 4.9 0.00011 30.7 3.7 33 1-42 1-33 (375)
194 PRK12921 2-dehydropantoate 2-r 73.8 2.5 5.4E-05 31.7 2.0 21 8-28 2-22 (305)
195 TIGR01915 npdG NADPH-dependent 73.7 2.5 5.3E-05 31.0 1.9 21 8-28 2-23 (219)
196 PRK11559 garR tartronate semia 72.9 2.9 6.2E-05 31.6 2.2 20 8-27 4-23 (296)
197 PRK08163 salicylate hydroxylas 72.8 4.5 9.8E-05 31.2 3.3 30 6-42 4-33 (396)
198 PRK07530 3-hydroxybutyryl-CoA 72.6 2.5 5.5E-05 32.1 1.8 23 5-27 3-25 (292)
199 PRK00066 ldh L-lactate dehydro 72.5 2.8 6.2E-05 33.0 2.2 22 6-27 6-27 (315)
200 PF01488 Shikimate_DH: Shikima 72.5 1.9 4.2E-05 29.5 1.1 24 4-27 10-33 (135)
201 PF02558 ApbA: Ketopantoate re 72.4 2.9 6.3E-05 28.2 1.9 19 9-27 1-19 (151)
202 PRK07417 arogenate dehydrogena 72.2 3.1 6.8E-05 31.6 2.3 20 8-27 2-21 (279)
203 PRK12480 D-lactate dehydrogena 72.1 2.6 5.6E-05 33.5 1.9 20 7-26 147-166 (330)
204 PRK06035 3-hydroxyacyl-CoA deh 72.0 2.7 5.8E-05 32.0 1.8 21 7-27 4-24 (291)
205 PRK08293 3-hydroxybutyryl-CoA 72.0 2.7 6E-05 31.9 1.9 22 6-27 3-24 (287)
206 cd05292 LDH_2 A subgroup of L- 71.8 2.8 6E-05 32.7 1.9 21 8-28 2-22 (308)
207 PRK15409 bifunctional glyoxyla 71.7 2.7 5.9E-05 33.3 1.9 20 7-26 146-165 (323)
208 PRK05714 2-octaprenyl-3-methyl 71.5 4.2 9.1E-05 31.8 2.9 30 6-42 2-31 (405)
209 cd01065 NAD_bind_Shikimate_DH 71.5 2.9 6.2E-05 28.2 1.7 22 6-27 19-40 (155)
210 PRK08020 ubiF 2-octaprenyl-3-m 71.4 4.8 0.00011 31.1 3.2 23 5-27 4-26 (391)
211 PRK07364 2-octaprenyl-6-methox 71.2 5 0.00011 31.2 3.2 30 6-42 18-47 (415)
212 PRK08507 prephenate dehydrogen 71.0 3.1 6.6E-05 31.4 1.9 20 8-27 2-21 (275)
213 TIGR01759 MalateDH-SF1 malate 70.9 2.9 6.2E-05 33.3 1.9 39 5-44 2-42 (323)
214 PRK06436 glycerate dehydrogena 70.9 2.9 6.2E-05 33.0 1.8 20 6-25 122-141 (303)
215 PRK15469 ghrA bifunctional gly 70.9 2.9 6.2E-05 33.0 1.8 22 5-26 135-156 (312)
216 PLN02696 1-deoxy-D-xylulose-5- 70.7 4.9 0.00011 34.1 3.3 24 7-30 58-82 (454)
217 PRK12939 short chain dehydroge 70.6 3.7 8.1E-05 29.1 2.2 27 1-27 2-29 (250)
218 cd01337 MDH_glyoxysomal_mitoch 70.6 3 6.4E-05 33.2 1.9 21 7-27 1-22 (310)
219 PRK00257 erythronate-4-phospha 70.5 2.9 6.3E-05 34.2 1.9 20 7-26 117-136 (381)
220 PRK06617 2-octaprenyl-6-methox 70.4 5 0.00011 31.3 3.1 21 7-27 2-22 (374)
221 PRK13529 malate dehydrogenase; 70.4 8.7 0.00019 33.5 4.7 48 4-54 293-344 (563)
222 TIGR01989 COQ6 Ubiquinone bios 70.3 4.1 8.9E-05 32.7 2.6 33 7-42 1-33 (437)
223 TIGR01408 Ube1 ubiquitin-activ 70.2 2.5 5.5E-05 38.7 1.6 25 3-27 416-440 (1008)
224 PRK08294 phenol 2-monooxygenas 70.2 5 0.00011 34.4 3.3 33 5-43 31-63 (634)
225 PF03949 Malic_M: Malic enzyme 70.2 3.7 8.1E-05 32.2 2.3 55 4-64 23-81 (255)
226 PLN02819 lysine-ketoglutarate 70.1 4.4 9.6E-05 37.5 3.1 40 8-47 571-614 (1042)
227 PRK12746 short chain dehydroge 70.1 3.9 8.4E-05 29.3 2.3 27 1-27 1-28 (254)
228 PF03721 UDPG_MGDP_dh_N: UDP-g 69.9 4.2 9.1E-05 29.6 2.4 22 7-28 1-22 (185)
229 TIGR01408 Ube1 ubiquitin-activ 69.9 1.9 4.1E-05 39.5 0.7 27 1-27 19-45 (1008)
230 PRK06753 hypothetical protein; 69.9 5.2 0.00011 30.6 3.0 20 8-27 2-21 (373)
231 PLN02928 oxidoreductase family 69.7 3 6.5E-05 33.3 1.7 20 7-26 160-179 (347)
232 PRK12826 3-ketoacyl-(acyl-carr 69.6 4 8.6E-05 28.9 2.2 28 1-28 1-29 (251)
233 PRK06901 aspartate-semialdehyd 69.5 3.2 6.9E-05 33.7 1.9 24 6-30 3-27 (322)
234 TIGR01505 tartro_sem_red 2-hyd 69.3 4.4 9.5E-05 30.7 2.5 20 8-27 1-20 (291)
235 PTZ00317 NADP-dependent malic 69.1 11 0.00024 32.8 5.2 55 4-64 295-354 (559)
236 cd01875 RhoG RhoG subfamily. 69.0 4.8 0.0001 28.5 2.5 24 4-27 1-25 (191)
237 PRK10669 putative cation:proto 68.8 3.8 8.3E-05 34.2 2.2 20 8-27 419-438 (558)
238 PRK07190 hypothetical protein; 68.8 5.5 0.00012 32.9 3.2 31 5-42 4-34 (487)
239 cd01338 MDH_choloroplast_like 68.8 3.3 7.2E-05 32.9 1.8 23 5-27 1-24 (322)
240 PTZ00117 malate dehydrogenase; 68.7 3.4 7.4E-05 32.5 1.8 24 5-28 4-27 (319)
241 KOG4039 Serine/threonine kinas 68.6 2.7 5.9E-05 32.7 1.2 39 3-48 15-54 (238)
242 PRK06728 aspartate-semialdehyd 68.4 3.4 7.4E-05 33.6 1.8 26 5-30 4-30 (347)
243 PRK14852 hypothetical protein; 68.4 3 6.4E-05 38.5 1.6 25 3-27 329-353 (989)
244 KOG2336 Molybdopterin biosynth 68.2 3.3 7.1E-05 34.3 1.7 56 4-65 80-138 (422)
245 cd00762 NAD_bind_malic_enz NAD 68.2 5.8 0.00013 31.2 3.0 55 4-64 23-81 (254)
246 PRK08690 enoyl-(acyl carrier p 68.1 4.7 0.0001 29.7 2.4 27 1-27 1-30 (261)
247 PRK14620 NAD(P)H-dependent gly 68.1 3.6 7.9E-05 31.6 1.9 21 8-28 2-22 (326)
248 PRK13369 glycerol-3-phosphate 68.0 4.6 0.0001 33.2 2.5 28 1-28 1-28 (502)
249 PF01262 AlaDh_PNT_C: Alanine 67.9 3.1 6.7E-05 29.4 1.3 25 3-27 17-41 (168)
250 PRK14618 NAD(P)H-dependent gly 67.9 4.6 0.0001 31.2 2.4 20 8-27 6-25 (328)
251 COG1893 ApbA Ketopantoate redu 67.8 6.3 0.00014 31.0 3.2 21 8-28 2-22 (307)
252 PRK12861 malic enzyme; Reviewe 67.6 6.6 0.00014 35.3 3.6 51 4-64 187-238 (764)
253 TIGR02853 spore_dpaA dipicolin 67.6 3.7 8E-05 32.0 1.8 22 6-27 151-172 (287)
254 COG0287 TyrA Prephenate dehydr 67.3 6.2 0.00014 30.9 3.0 39 6-51 3-41 (279)
255 cd04116 Rab9 Rab9 subfamily. 67.1 6.6 0.00014 26.4 2.8 25 3-27 2-27 (170)
256 PRK06996 hypothetical protein; 67.1 4.4 9.5E-05 31.9 2.2 21 7-27 12-32 (398)
257 PRK08605 D-lactate dehydrogena 67.1 3.6 7.7E-05 32.5 1.7 21 6-26 146-166 (332)
258 PRK09496 trkA potassium transp 67.1 6.6 0.00014 31.1 3.2 21 7-27 232-252 (453)
259 PRK06223 malate dehydrogenase; 66.8 4.3 9.4E-05 31.0 2.0 21 7-27 3-23 (307)
260 PLN02712 arogenate dehydrogena 66.5 3.8 8.2E-05 35.8 1.8 21 7-27 53-73 (667)
261 PTZ00325 malate dehydrogenase; 66.3 4.2 9.2E-05 32.4 1.9 20 8-27 10-30 (321)
262 cd00704 MDH Malate dehydrogena 66.2 4.4 9.5E-05 32.2 2.0 39 7-46 1-41 (323)
263 COG0039 Mdh Malate/lactate deh 66.1 4.4 9.5E-05 32.7 2.0 33 8-45 2-34 (313)
264 TIGR01087 murD UDP-N-acetylmur 66.0 5.5 0.00012 31.7 2.6 20 8-27 1-20 (433)
265 KOG2018 Predicted dinucleotide 66.0 5.6 0.00012 33.3 2.6 19 9-27 77-95 (430)
266 TIGR03026 NDP-sugDHase nucleot 65.9 4.9 0.00011 32.3 2.3 20 8-27 2-21 (411)
267 PF03435 Saccharop_dh: Sacchar 65.9 4.2 9.1E-05 32.0 1.8 22 9-30 1-22 (386)
268 TIGR01772 MDH_euk_gproteo mala 65.8 4.9 0.00011 31.9 2.2 21 8-28 1-22 (312)
269 PRK06719 precorrin-2 dehydroge 65.6 7.8 0.00017 27.6 3.0 22 6-27 13-34 (157)
270 PRK03562 glutathione-regulated 65.5 5.1 0.00011 34.4 2.4 21 7-27 401-421 (621)
271 PRK15461 NADH-dependent gamma- 65.5 5.4 0.00012 30.7 2.3 20 8-27 3-22 (296)
272 TIGR01381 E1_like_apg7 E1-like 65.5 3.8 8.2E-05 36.4 1.6 24 4-27 336-359 (664)
273 PRK07774 short chain dehydroge 65.5 5.3 0.00012 28.4 2.2 28 1-28 1-29 (250)
274 PRK07574 formate dehydrogenase 65.4 4.2 9.1E-05 33.3 1.8 21 7-27 193-213 (385)
275 PRK09590 celB cellobiose phosp 65.2 16 0.00035 24.7 4.4 40 4-47 1-40 (104)
276 PRK13394 3-hydroxybutyrate deh 65.1 5.4 0.00012 28.5 2.2 28 1-28 2-30 (262)
277 PTZ00367 squalene epoxidase; P 64.8 8.2 0.00018 33.0 3.5 25 3-27 30-54 (567)
278 TIGR01745 asd_gamma aspartate- 64.7 5.2 0.00011 32.9 2.2 24 8-31 2-26 (366)
279 PRK06500 short chain dehydroge 64.6 5.9 0.00013 28.1 2.3 28 1-28 1-29 (249)
280 PRK07538 hypothetical protein; 64.5 7.7 0.00017 30.6 3.1 29 7-42 1-29 (413)
281 PF01494 FAD_binding_3: FAD bi 64.4 6.2 0.00013 29.0 2.4 22 6-27 1-22 (356)
282 PF02737 3HCDH_N: 3-hydroxyacy 64.2 5 0.00011 28.9 1.9 30 8-44 1-30 (180)
283 PF01266 DAO: FAD dependent ox 64.2 8.9 0.00019 28.1 3.2 28 8-42 1-28 (358)
284 PRK08306 dipicolinate synthase 63.9 5 0.00011 31.3 1.9 23 5-27 151-173 (296)
285 PLN02712 arogenate dehydrogena 63.7 4.8 0.0001 35.1 2.0 23 5-27 368-390 (667)
286 PLN00093 geranylgeranyl diphos 63.5 9.4 0.0002 31.4 3.5 22 6-27 39-60 (450)
287 PRK05261 putative phosphoketol 63.3 23 0.00049 32.1 6.1 58 7-69 614-674 (785)
288 PRK06194 hypothetical protein; 63.3 5.8 0.00013 29.1 2.1 27 1-27 1-28 (287)
289 TIGR03649 ergot_EASG ergot alk 63.2 6.5 0.00014 29.0 2.3 20 8-27 1-21 (285)
290 PLN02306 hydroxypyruvate reduc 63.2 4.9 0.00011 32.9 1.8 20 7-26 166-185 (386)
291 PF13241 NAD_binding_7: Putati 62.9 6.8 0.00015 25.6 2.2 35 4-45 5-39 (103)
292 TIGR02032 GG-red-SF geranylger 62.7 11 0.00024 27.2 3.4 21 7-27 1-21 (295)
293 PRK11728 hydroxyglutarate oxid 62.7 5.9 0.00013 31.0 2.2 22 7-28 3-24 (393)
294 TIGR01988 Ubi-OHases Ubiquinon 62.6 9.6 0.00021 28.9 3.2 20 8-27 1-20 (385)
295 PRK08244 hypothetical protein; 62.6 8.8 0.00019 31.1 3.2 30 7-43 3-32 (493)
296 PRK12936 3-ketoacyl-(acyl-carr 62.5 6.9 0.00015 27.6 2.3 27 1-27 1-28 (245)
297 COG0579 Predicted dehydrogenas 62.3 6 0.00013 33.1 2.2 26 4-29 1-26 (429)
298 PRK12549 shikimate 5-dehydroge 62.2 5.7 0.00012 30.8 2.0 20 8-27 129-148 (284)
299 PRK07531 bifunctional 3-hydrox 62.0 6.5 0.00014 32.7 2.4 20 8-27 6-25 (495)
300 PLN02596 hexokinase-like 62.0 9.7 0.00021 32.4 3.4 29 15-46 201-229 (490)
301 COG5310 Homospermidine synthas 61.9 1.3 2.9E-05 37.2 -1.7 20 8-27 15-34 (481)
302 PRK09599 6-phosphogluconate de 61.8 5.8 0.00013 30.4 1.9 20 8-27 2-21 (301)
303 COG0111 SerA Phosphoglycerate 61.8 5.8 0.00013 31.7 1.9 19 8-26 144-162 (324)
304 PRK06598 aspartate-semialdehyd 61.7 4.8 0.0001 33.1 1.5 25 7-31 2-27 (369)
305 PRK07576 short chain dehydroge 61.7 7.1 0.00015 28.6 2.3 27 1-27 1-31 (264)
306 PLN03139 formate dehydrogenase 61.6 6 0.00013 32.5 2.0 20 7-26 200-219 (386)
307 PRK11790 D-3-phosphoglycerate 61.4 5.5 0.00012 32.6 1.8 19 8-26 153-171 (409)
308 PRK08226 short chain dehydroge 61.0 7.3 0.00016 28.1 2.2 28 1-28 1-29 (263)
309 COG0654 UbiH 2-polyprenyl-6-me 61.0 5.8 0.00013 31.2 1.8 22 6-27 2-23 (387)
310 PLN00106 malate dehydrogenase 61.0 6 0.00013 31.6 1.9 22 6-27 18-40 (323)
311 PLN03129 NADP-dependent malic 60.9 18 0.00038 31.8 4.8 56 4-64 319-379 (581)
312 PRK07588 hypothetical protein; 60.8 10 0.00022 29.5 3.1 21 7-27 1-21 (391)
313 PRK00258 aroE shikimate 5-dehy 60.5 6.2 0.00014 30.1 1.9 21 7-27 124-144 (278)
314 PRK05993 short chain dehydroge 60.4 8.6 0.00019 28.4 2.6 19 9-27 7-26 (277)
315 PRK06180 short chain dehydroge 60.3 9 0.0002 28.2 2.6 19 9-27 7-26 (277)
316 COG0644 FixC Dehydrogenases (f 60.0 8.1 0.00018 30.6 2.5 25 4-28 1-25 (396)
317 PLN02463 lycopene beta cyclase 60.0 11 0.00024 31.1 3.4 24 4-27 26-49 (447)
318 PRK12439 NAD(P)H-dependent gly 59.9 7.3 0.00016 30.7 2.2 22 7-28 8-29 (341)
319 PF13454 NAD_binding_9: FAD-NA 59.8 7.5 0.00016 27.0 2.0 31 10-42 1-31 (156)
320 PRK06997 enoyl-(acyl carrier p 59.6 8.5 0.00018 28.4 2.4 27 1-27 1-30 (260)
321 PTZ00369 Ras-like protein; Pro 59.4 6.6 0.00014 27.5 1.7 26 1-27 1-27 (189)
322 PTZ00075 Adenosylhomocysteinas 58.8 6.5 0.00014 33.5 1.8 20 7-26 255-274 (476)
323 PRK05442 malate dehydrogenase; 58.6 8.4 0.00018 30.7 2.4 21 7-27 5-26 (326)
324 cd00300 LDH_like L-lactate deh 58.5 6.3 0.00014 30.6 1.6 19 9-27 1-19 (300)
325 PRK09260 3-hydroxybutyryl-CoA 58.5 7 0.00015 29.7 1.8 20 8-27 3-22 (288)
326 TIGR01984 UbiH 2-polyprenyl-6- 58.4 12 0.00026 28.7 3.1 20 8-27 1-20 (382)
327 TIGR00465 ilvC ketol-acid redu 58.3 7.8 0.00017 30.8 2.1 20 8-27 5-24 (314)
328 PRK07984 enoyl-(acyl carrier p 58.2 8.9 0.00019 28.6 2.3 27 1-27 1-30 (262)
329 PRK12490 6-phosphogluconate de 58.0 7.5 0.00016 29.9 2.0 20 8-27 2-21 (299)
330 PRK05086 malate dehydrogenase; 58.0 6.1 0.00013 31.1 1.5 21 7-27 1-22 (312)
331 PLN02985 squalene monooxygenas 57.9 12 0.00027 31.3 3.3 25 3-27 40-64 (514)
332 TIGR02023 BchP-ChlP geranylger 57.8 12 0.00026 29.3 3.1 21 7-27 1-21 (388)
333 PLN02427 UDP-apiose/xylose syn 57.8 7.9 0.00017 30.2 2.1 24 5-28 13-37 (386)
334 PTZ00245 ubiquitin activating 57.8 4.8 0.0001 32.5 0.9 25 3-27 23-47 (287)
335 PLN02240 UDP-glucose 4-epimera 57.8 8 0.00017 29.2 2.0 26 3-28 2-28 (352)
336 COG1100 GTPase SAR1 and relate 57.7 8.6 0.00019 27.0 2.1 24 4-27 3-27 (219)
337 PRK05257 malate:quinone oxidor 57.2 7.6 0.00016 32.4 2.0 25 4-28 3-27 (494)
338 PRK03659 glutathione-regulated 57.0 8.3 0.00018 32.9 2.2 21 7-27 401-421 (601)
339 PRK09135 pteridine reductase; 56.8 9.6 0.00021 26.8 2.2 24 4-27 4-28 (249)
340 COG0451 WcaG Nucleoside-diphos 56.8 19 0.0004 26.3 3.8 20 9-28 3-23 (314)
341 PRK10262 thioredoxin reductase 56.7 10 0.00022 28.8 2.5 27 1-27 1-27 (321)
342 TIGR00872 gnd_rel 6-phosphoglu 56.7 7.8 0.00017 29.8 1.8 20 8-27 2-21 (298)
343 PRK10675 UDP-galactose-4-epime 56.7 8.7 0.00019 28.8 2.1 21 8-28 2-23 (338)
344 PRK08017 oxidoreductase; Provi 56.6 9.4 0.0002 27.2 2.2 19 9-27 5-24 (256)
345 TIGR01763 MalateDH_bact malate 56.6 7.7 0.00017 30.4 1.8 20 8-27 3-22 (305)
346 TIGR03022 WbaP_sugtrans Undeca 56.5 19 0.00041 29.2 4.1 35 8-48 127-161 (456)
347 TIGR00518 alaDH alanine dehydr 56.4 9.3 0.0002 30.7 2.3 24 4-27 165-188 (370)
348 PRK08243 4-hydroxybenzoate 3-m 56.3 13 0.00028 29.1 3.1 22 6-27 2-23 (392)
349 PRK07326 short chain dehydroge 56.2 11 0.00023 26.6 2.4 25 3-27 3-28 (237)
350 KOG2380 Prephenate dehydrogena 56.2 9.7 0.00021 32.3 2.4 22 6-27 52-73 (480)
351 PRK12409 D-amino acid dehydrog 56.0 8.4 0.00018 30.1 2.0 20 8-27 3-22 (410)
352 PRK12266 glpD glycerol-3-phosp 56.0 9.8 0.00021 31.5 2.4 24 4-27 4-27 (508)
353 TIGR01373 soxB sarcosine oxida 56.0 8.8 0.00019 30.0 2.1 24 5-28 29-52 (407)
354 TIGR00936 ahcY adenosylhomocys 55.8 7.7 0.00017 32.2 1.8 21 7-27 196-216 (406)
355 PRK08589 short chain dehydroge 55.7 10 0.00022 27.9 2.3 27 1-27 1-28 (272)
356 PRK15059 tartronate semialdehy 55.4 9.5 0.00021 29.5 2.1 20 8-27 2-21 (292)
357 PRK14192 bifunctional 5,10-met 55.3 8.8 0.00019 30.1 2.0 37 8-44 161-210 (283)
358 TIGR02360 pbenz_hydroxyl 4-hyd 55.3 14 0.00029 29.2 3.0 30 7-43 3-32 (390)
359 TIGR01377 soxA_mon sarcosine o 55.2 16 0.00035 27.9 3.4 21 7-27 1-21 (380)
360 PLN00141 Tic62-NAD(P)-related 55.1 9 0.00019 27.9 1.9 21 8-28 19-40 (251)
361 COG1260 INO1 Myo-inositol-1-ph 55.1 13 0.00029 30.8 3.0 50 3-52 2-64 (362)
362 PRK07454 short chain dehydroge 54.8 13 0.00028 26.4 2.6 23 3-27 5-28 (241)
363 COG0345 ProC Pyrroline-5-carbo 54.6 9.5 0.00021 30.0 2.0 22 8-29 3-24 (266)
364 cd01493 APPBP1_RUB Ubiquitin a 54.6 5.3 0.00011 33.2 0.6 25 3-27 17-41 (425)
365 PLN02968 Probable N-acetyl-gam 54.5 13 0.00029 30.3 2.9 23 6-28 38-61 (381)
366 PRK03803 murD UDP-N-acetylmura 54.5 11 0.00023 30.4 2.4 19 9-27 9-27 (448)
367 PF07991 IlvN: Acetohydroxy ac 54.3 6.1 0.00013 29.4 0.9 33 8-47 6-38 (165)
368 PRK13230 nitrogenase reductase 54.2 8.4 0.00018 29.0 1.6 40 4-49 1-41 (279)
369 PRK04965 NADH:flavorubredoxin 54.1 17 0.00036 28.4 3.3 20 8-27 4-23 (377)
370 TIGR01214 rmlD dTDP-4-dehydror 54.0 11 0.00024 27.5 2.2 21 8-28 1-22 (287)
371 PRK08264 short chain dehydroge 54.0 11 0.00025 26.6 2.2 25 4-28 4-29 (238)
372 PRK06924 short chain dehydroge 53.9 12 0.00025 26.7 2.3 20 8-27 3-23 (251)
373 PRK05476 S-adenosyl-L-homocyst 53.8 8.8 0.00019 32.0 1.8 21 7-27 213-233 (425)
374 TIGR01757 Malate-DH_plant mala 53.7 9.1 0.0002 31.6 1.9 38 5-42 43-81 (387)
375 PRK13403 ketol-acid reductoiso 53.7 10 0.00022 31.1 2.1 23 4-26 14-36 (335)
376 PF01370 Epimerase: NAD depend 53.5 10 0.00022 26.5 1.8 20 9-28 1-21 (236)
377 cd04119 RJL RJL (RabJ-Like) su 53.4 12 0.00027 24.5 2.2 23 7-29 1-24 (168)
378 PTZ00318 NADH dehydrogenase-li 53.3 13 0.00028 29.8 2.7 41 2-51 6-46 (424)
379 TIGR01327 PGDH D-3-phosphoglyc 53.2 9.2 0.0002 32.2 1.9 20 7-26 139-158 (525)
380 PF07992 Pyr_redox_2: Pyridine 53.2 19 0.00042 24.6 3.2 28 8-42 1-28 (201)
381 cd04135 Tc10 TC10 subfamily. 52.8 12 0.00027 25.1 2.2 21 7-27 1-22 (174)
382 PRK06129 3-hydroxyacyl-CoA deh 52.8 10 0.00022 29.2 1.9 20 8-27 4-23 (308)
383 PRK06292 dihydrolipoamide dehy 52.7 11 0.00024 30.2 2.2 24 4-27 1-24 (460)
384 PRK11445 putative oxidoreducta 52.6 9.3 0.0002 29.6 1.7 21 7-27 2-22 (351)
385 TIGR01296 asd_B aspartate-semi 52.5 11 0.00025 29.9 2.2 20 8-27 1-21 (339)
386 PRK05868 hypothetical protein; 52.4 17 0.00037 28.5 3.2 28 8-42 3-30 (372)
387 PRK00141 murD UDP-N-acetylmura 52.4 10 0.00022 31.1 2.0 20 8-27 17-36 (473)
388 PF05368 NmrA: NmrA-like famil 52.3 17 0.00036 26.1 2.9 19 9-27 1-20 (233)
389 PRK08265 short chain dehydroge 52.3 13 0.00027 27.2 2.3 27 1-27 1-28 (261)
390 PRK02318 mannitol-1-phosphate 52.1 12 0.00027 29.9 2.4 20 8-27 2-21 (381)
391 cd01867 Rab8_Rab10_Rab13_like 52.1 14 0.00031 24.9 2.4 23 6-28 3-26 (167)
392 PRK12828 short chain dehydroge 51.8 14 0.00031 25.7 2.4 26 3-28 4-30 (239)
393 COG1486 CelF Alpha-galactosida 51.7 20 0.00043 30.5 3.6 64 4-67 1-96 (442)
394 PRK07889 enoyl-(acyl carrier p 51.4 13 0.00027 27.3 2.2 27 1-27 2-31 (256)
395 PRK06077 fabG 3-ketoacyl-(acyl 51.4 14 0.0003 26.2 2.3 25 3-27 3-28 (252)
396 PRK12935 acetoacetyl-CoA reduc 51.3 13 0.00028 26.5 2.2 27 1-27 1-28 (247)
397 PRK08217 fabG 3-ketoacyl-(acyl 51.1 13 0.00028 26.2 2.1 25 4-28 3-28 (253)
398 PRK15181 Vi polysaccharide bio 51.1 11 0.00025 29.0 2.0 25 4-28 13-38 (348)
399 PRK07608 ubiquinone biosynthes 51.1 20 0.00044 27.5 3.3 22 6-27 5-26 (388)
400 COG4091 Predicted homoserine d 51.0 19 0.00041 30.6 3.3 35 5-47 16-50 (438)
401 COG3640 CooC CO dehydrogenase 51.0 30 0.00065 27.6 4.3 29 7-36 1-29 (255)
402 PF00071 Ras: Ras family; Int 51.0 16 0.00035 24.1 2.4 22 8-29 1-23 (162)
403 PRK06475 salicylate hydroxylas 50.9 20 0.00043 28.2 3.3 30 7-43 3-32 (400)
404 PRK06953 short chain dehydroge 50.5 16 0.00035 25.8 2.5 19 9-27 4-23 (222)
405 COG0289 DapB Dihydrodipicolina 50.5 20 0.00044 28.5 3.3 37 6-50 2-39 (266)
406 PRK13581 D-3-phosphoglycerate 50.4 11 0.00023 31.8 1.8 20 7-26 141-160 (526)
407 TIGR01281 DPOR_bchL light-inde 50.2 34 0.00074 25.3 4.3 38 9-50 3-41 (268)
408 TIGR01758 MDH_euk_cyt malate d 50.2 13 0.00028 29.6 2.2 36 8-44 1-38 (324)
409 TIGR03219 salicylate_mono sali 50.2 18 0.0004 28.4 3.0 21 7-27 1-21 (414)
410 cd04101 RabL4 RabL4 (Rab-like4 49.9 15 0.00033 24.3 2.2 21 7-27 1-22 (164)
411 COG0476 ThiF Dinucleotide-util 49.8 13 0.00027 27.9 2.0 25 3-27 27-51 (254)
412 PRK04663 murD UDP-N-acetylmura 49.7 15 0.00032 29.7 2.4 28 1-28 1-29 (438)
413 PLN02662 cinnamyl-alcohol dehy 49.3 11 0.00024 28.0 1.6 20 8-27 6-26 (322)
414 TIGR01179 galE UDP-glucose-4-e 49.2 15 0.00032 26.9 2.2 21 8-28 1-22 (328)
415 PRK08177 short chain dehydroge 49.1 16 0.00035 25.8 2.4 19 9-27 4-23 (225)
416 PLN02494 adenosylhomocysteinas 49.1 12 0.00025 32.1 1.8 20 7-26 255-274 (477)
417 TIGR03376 glycerol3P_DH glycer 49.1 14 0.0003 29.8 2.2 21 8-28 1-21 (342)
418 PRK11101 glpA sn-glycerol-3-ph 48.9 16 0.00034 30.7 2.6 24 4-27 4-27 (546)
419 PRK14989 nitrite reductase sub 48.9 18 0.00038 32.5 3.0 22 6-27 3-24 (847)
420 cd01893 Miro1 Miro1 subfamily. 48.9 16 0.00035 24.7 2.2 22 7-28 1-23 (166)
421 PRK08010 pyridine nucleotide-d 48.8 14 0.0003 29.5 2.2 24 4-27 1-24 (441)
422 PRK07251 pyridine nucleotide-d 48.8 14 0.0003 29.5 2.1 24 4-27 1-24 (438)
423 TIGR01790 carotene-cycl lycope 48.7 23 0.00049 27.3 3.3 20 8-27 1-20 (388)
424 KOG1531 F0F1-type ATP synthase 48.7 19 0.00042 29.3 3.0 38 14-52 110-147 (304)
425 PRK12859 3-ketoacyl-(acyl-carr 48.6 17 0.00037 26.4 2.5 27 1-27 1-30 (256)
426 CHL00194 ycf39 Ycf39; Provisio 48.5 13 0.00028 28.2 1.9 20 8-27 2-22 (317)
427 PRK14806 bifunctional cyclohex 48.5 14 0.0003 31.8 2.2 20 8-27 5-24 (735)
428 TIGR01181 dTDP_gluc_dehyt dTDP 48.4 17 0.00036 26.5 2.4 21 8-28 1-22 (317)
429 PRK10015 oxidoreductase; Provi 48.4 24 0.00052 28.6 3.5 24 4-27 3-26 (429)
430 PLN02852 ferredoxin-NADP+ redu 48.4 28 0.00061 29.4 4.0 21 8-28 168-188 (491)
431 PRK11908 NAD-dependent epimera 48.3 16 0.00034 27.9 2.3 20 8-27 3-23 (347)
432 PRK02006 murD UDP-N-acetylmura 48.1 16 0.00034 30.0 2.4 20 8-27 9-28 (498)
433 COG3957 Phosphoketolase [Carbo 48.1 67 0.0015 29.4 6.4 58 8-69 625-684 (793)
434 TIGR00231 small_GTP small GTP- 47.9 16 0.00034 22.9 2.0 24 6-29 1-25 (161)
435 cd04139 RalA_RalB RalA/RalB su 47.9 17 0.00038 23.7 2.2 21 7-27 1-22 (164)
436 PRK05884 short chain dehydroge 47.7 17 0.00037 26.1 2.3 20 8-27 2-22 (223)
437 PRK07023 short chain dehydroge 47.7 17 0.00037 25.9 2.3 20 8-27 3-23 (243)
438 PRK15057 UDP-glucose 6-dehydro 47.5 13 0.00029 30.1 1.9 20 8-27 2-21 (388)
439 PRK09730 putative NAD(P)-bindi 47.4 18 0.00038 25.5 2.3 19 9-27 4-23 (247)
440 PF07994 NAD_binding_5: Myo-in 47.4 13 0.00029 29.6 1.9 23 7-29 1-24 (295)
441 PRK14106 murD UDP-N-acetylmura 47.3 14 0.0003 29.5 2.0 25 3-27 2-26 (450)
442 cd05213 NAD_bind_Glutamyl_tRNA 47.3 13 0.00028 28.9 1.8 23 5-27 177-199 (311)
443 cd04149 Arf6 Arf6 subfamily. 47.0 16 0.00034 25.2 2.0 25 3-27 6-31 (168)
444 PTZ00132 GTP-binding nuclear p 46.9 13 0.00028 26.5 1.6 25 1-25 4-29 (215)
445 PRK05249 soluble pyridine nucl 46.8 16 0.00035 29.2 2.3 25 3-27 2-26 (461)
446 PRK12829 short chain dehydroge 46.8 15 0.00033 26.2 1.9 26 3-28 8-34 (264)
447 PF00106 adh_short: short chai 46.7 15 0.00033 24.3 1.8 20 9-28 3-23 (167)
448 PRK01390 murD UDP-N-acetylmura 46.7 17 0.00038 29.3 2.5 19 8-26 11-29 (460)
449 cd01339 LDH-like_MDH L-lactate 46.6 13 0.00028 28.6 1.6 19 9-27 1-19 (300)
450 PF13809 Tubulin_2: Tubulin li 46.5 33 0.00071 27.2 3.9 40 10-49 1-43 (345)
451 KOG0069 Glyoxylate/hydroxypyru 46.5 13 0.00029 30.3 1.8 20 8-27 164-183 (336)
452 PLN02405 hexokinase 46.4 24 0.00052 30.1 3.3 30 15-47 201-230 (497)
453 PTZ00383 malate:quinone oxidor 46.3 17 0.00036 30.7 2.4 25 5-29 44-68 (497)
454 TIGR03169 Nterm_to_SelD pyridi 46.3 39 0.00084 25.9 4.2 34 8-44 147-180 (364)
455 cd01874 Cdc42 Cdc42 subfamily. 46.3 17 0.00037 25.2 2.1 22 7-28 2-24 (175)
456 PLN02697 lycopene epsilon cycl 46.3 22 0.00048 30.2 3.1 30 6-42 108-137 (529)
457 PLN02914 hexokinase 46.2 23 0.0005 30.2 3.2 30 15-47 201-230 (490)
458 PRK03806 murD UDP-N-acetylmura 46.1 18 0.00038 29.0 2.4 24 3-26 3-26 (438)
459 PRK10157 putative oxidoreducta 45.9 16 0.00034 29.5 2.1 23 5-27 4-26 (428)
460 PRK01438 murD UDP-N-acetylmura 45.8 14 0.00031 29.8 1.9 21 7-27 17-37 (480)
461 PRK07333 2-octaprenyl-6-methox 45.8 14 0.0003 28.6 1.7 22 7-28 2-23 (403)
462 PRK09009 C factor cell-cell si 45.8 18 0.00038 25.6 2.1 21 8-28 2-23 (235)
463 TIGR01809 Shik-DH-AROM shikima 45.8 16 0.00036 28.1 2.1 22 6-27 125-146 (282)
464 COG1052 LdhA Lactate dehydroge 45.8 14 0.0003 29.6 1.7 20 7-26 147-166 (324)
465 cd04145 M_R_Ras_like M-Ras/R-R 45.3 13 0.00029 24.4 1.4 23 5-27 1-24 (164)
466 KOG1430 C-3 sterol dehydrogena 45.2 28 0.00061 28.6 3.5 36 7-47 5-41 (361)
467 PF15141 DUF4574: Domain of un 45.2 1.1 2.4E-05 30.2 -3.9 27 1-27 1-29 (84)
468 PRK08655 prephenate dehydrogen 45.1 16 0.00036 30.0 2.1 20 8-27 2-22 (437)
469 PRK06718 precorrin-2 dehydroge 45.1 16 0.00035 26.9 1.9 22 6-27 10-31 (202)
470 PRK07666 fabG 3-ketoacyl-(acyl 45.1 19 0.00041 25.5 2.2 24 4-27 5-29 (239)
471 PRK15182 Vi polysaccharide bio 45.1 18 0.00039 29.8 2.3 23 5-27 5-27 (425)
472 PRK10217 dTDP-glucose 4,6-dehy 45.0 20 0.00043 27.3 2.4 21 8-28 3-24 (355)
473 smart00177 ARF ARF-like small 45.0 16 0.00034 25.3 1.7 25 3-27 10-35 (175)
474 TIGR03025 EPS_sugtrans exopoly 44.8 28 0.0006 28.1 3.4 36 7-48 126-161 (445)
475 PRK08268 3-hydroxy-acyl-CoA de 44.6 19 0.0004 30.4 2.4 20 8-27 9-28 (507)
476 PRK05693 short chain dehydroge 44.6 20 0.00044 26.1 2.4 19 9-27 4-23 (274)
477 PRK06198 short chain dehydroge 44.5 20 0.00043 25.7 2.3 28 1-28 1-29 (260)
478 PF01232 Mannitol_dh: Mannitol 44.4 19 0.00041 25.2 2.1 21 7-27 1-24 (151)
479 PRK06057 short chain dehydroge 44.4 19 0.00042 25.9 2.2 26 2-27 3-29 (255)
480 PRK02705 murD UDP-N-acetylmura 44.3 18 0.00038 29.0 2.1 20 8-27 2-21 (459)
481 PRK07453 protochlorophyllide o 44.2 20 0.00043 27.1 2.3 27 1-27 1-28 (322)
482 PRK06182 short chain dehydroge 43.8 18 0.00039 26.4 2.0 20 8-27 5-25 (273)
483 TIGR01035 hemA glutamyl-tRNA r 43.8 16 0.00034 29.8 1.8 23 5-27 179-201 (417)
484 PRK15204 undecaprenyl-phosphat 43.6 28 0.00061 28.9 3.3 35 7-47 147-181 (476)
485 smart00173 RAS Ras subfamily o 43.6 22 0.00048 23.5 2.2 21 7-27 1-22 (164)
486 cd04106 Rab23_lke Rab23-like s 43.0 21 0.00045 23.5 2.0 22 7-28 1-23 (162)
487 PRK13512 coenzyme A disulfide 42.9 28 0.00062 28.0 3.1 35 8-49 3-37 (438)
488 TIGR02028 ChlP geranylgeranyl 42.8 29 0.00062 27.6 3.1 21 7-27 1-21 (398)
489 PLN02172 flavin-containing mon 42.7 33 0.00071 28.4 3.5 36 4-46 8-43 (461)
490 cd04154 Arl2 Arl2 subfamily. 42.5 18 0.0004 24.5 1.8 26 3-28 11-37 (173)
491 PRK05876 short chain dehydroge 42.5 22 0.00047 26.5 2.3 28 1-28 1-29 (275)
492 PRK13232 nifH nitrogenase redu 42.5 16 0.00035 27.3 1.6 42 4-51 1-43 (273)
493 TIGR00853 pts-lac PTS system, 42.4 66 0.0014 21.1 4.4 39 7-48 4-43 (95)
494 COG0281 SfcA Malic enzyme [Ene 42.4 70 0.0015 27.3 5.4 45 3-54 196-240 (432)
495 PRK07877 hypothetical protein; 42.1 23 0.00051 31.6 2.7 23 4-27 105-127 (722)
496 cd00248 Mth938-like Mth938-lik 42.1 24 0.00053 23.7 2.3 33 7-42 53-85 (109)
497 PTZ00107 hexokinase; Provision 42.1 31 0.00066 29.2 3.3 30 14-46 189-218 (464)
498 PRK12744 short chain dehydroge 41.9 24 0.00051 25.5 2.3 20 8-27 10-30 (257)
499 PRK11199 tyrA bifunctional cho 41.8 22 0.00047 28.6 2.3 21 7-27 99-120 (374)
500 cd04110 Rab35 Rab35 subfamily. 41.7 26 0.00056 24.8 2.5 23 6-28 6-29 (199)
No 1
>PLN02700 homoserine dehydrogenase family protein
Probab=99.72 E-value=1.9e-17 Score=133.93 Aligned_cols=79 Identities=66% Similarity=1.071 Sum_probs=71.9
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCcccc
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTL 82 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l 82 (95)
|++|+|+|+|+|+||++|++||.+||++++++|+++|||||+||++++++++..++|||++.+.+....|+++..++++
T Consensus 1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~ 79 (377)
T PLN02700 1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSAL 79 (377)
T ss_pred CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhh
Confidence 8999999999999999999999999998888899999999999999999765556799999999977778888877766
No 2
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.48 E-value=9.1e-14 Score=109.73 Aligned_cols=72 Identities=21% Similarity=0.365 Sum_probs=63.5
Q ss_pred eeCEEEEeeccccHHHHHHHHhhhHHH-HhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCcccccC
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVSCRSLH-ANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLIG 84 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~-~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l~~ 84 (95)
.++|+|+|||+||++++++|.++++.+ +++|++++|++|+||+++++ + ++|+|++.+++. |++++++..++.
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~--~--~~Gid~~~l~~~---~~~~~~~~~~~~ 74 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIW--L--PEDIDLREAKEV---KENFGKLSNWGN 74 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCcccc--C--CCCCChHHHHHh---hhccCchhhccc
Confidence 589999999999999999999998865 55699999999999999998 5 889999988887 777787777653
No 3
>PRK06392 homoserine dehydrogenase; Provisional
Probab=99.39 E-value=7.4e-13 Score=104.89 Aligned_cols=58 Identities=26% Similarity=0.267 Sum_probs=54.0
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHH
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEI 69 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~ 69 (95)
++|+|+|||+||++++++|.++++. +++|++++||+|+||+++++ + ++|||++.+++.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~-~~~g~~l~VVaVsds~g~l~--~--~~Gldl~~l~~~ 58 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDD-RRNNNGISVVSVSDSKLSYY--N--ERGLDIGKIISY 58 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHh-HhcCCCeEEEEEEECCCccc--C--CcCCChHHHHHH
Confidence 3799999999999999999999888 78899999999999999998 5 889999998887
No 4
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=99.35 E-value=1.1e-12 Score=104.52 Aligned_cols=68 Identities=57% Similarity=0.961 Sum_probs=64.2
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICR 71 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~ 71 (95)
|+.++|+++|||+||++|++||..+|+++.+-++.++||+||||++.++.+|+.|+.|+.+-.-|+..
T Consensus 1 ~k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~ 68 (364)
T KOG0455|consen 1 MKKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIK 68 (364)
T ss_pred CccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999988877643
No 5
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=99.28 E-value=9.3e-12 Score=108.38 Aligned_cols=70 Identities=24% Similarity=0.310 Sum_probs=60.7
Q ss_pred CcceeeCEEEEeeccccHHHHHHHHhhhHHH-HhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcC
Q 034422 2 ATLKKIPSVLMGCGGVGRQLLQHIVSCRSLH-ANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAG 75 (95)
Q Consensus 2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~-~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~ 75 (95)
..|+.|+|+|+|||+||++|+++|.+|++.+ +++|++++|++|+||+++++ + ++|+|...+.+..+.+..
T Consensus 454 ~~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~--~--~~gi~~~~~~~~~~~~~~ 524 (810)
T PRK09466 454 RAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLL--N--YDGLDASRALAFFDDEAV 524 (810)
T ss_pred CcCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCcccc--C--ccCCCHHHHHhhHHhhcC
Confidence 4678999999999999999999999999965 55699999999999999999 5 889999888876554433
No 6
>PRK06813 homoserine dehydrogenase; Validated
Probab=99.25 E-value=1.4e-11 Score=98.57 Aligned_cols=60 Identities=25% Similarity=0.336 Sum_probs=53.3
Q ss_pred eeCEEEEeeccccHHHHHHHHhhhHHH-HhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHH
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVSCRSLH-ANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEI 69 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~-~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~ 69 (95)
+++|+|+|||+||++|+++|.++++.+ +++|++++|++|+||+++++ + ++|+|+..+++.
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~--~--~~gi~~~~~l~~ 62 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIH--N--EDGLSIHHLLRY 62 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhc--c--ccCCChhhhhhc
Confidence 489999999999999999999999865 56699999999999999998 5 789998876654
No 7
>PRK06270 homoserine dehydrogenase; Provisional
Probab=99.21 E-value=4e-11 Score=94.52 Aligned_cols=60 Identities=25% Similarity=0.485 Sum_probs=54.4
Q ss_pred eeCEEEEeeccccHHHHHHHHhhhHHH-HhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHH
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVSCRSLH-ANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEI 69 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~-~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~ 69 (95)
+++|+|+|||+||++++++|.++++.+ +++|++++||+|+||+++++ + ++|+|++++.+.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~--~--~~Gi~~~~~~~~ 62 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAI--D--PDGLDLELALKV 62 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCccc--C--cCCCCHHHHHHH
Confidence 689999999999999999999988855 55699999999999999999 5 789999988877
No 8
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=99.21 E-value=2.8e-11 Score=105.13 Aligned_cols=65 Identities=23% Similarity=0.393 Sum_probs=57.7
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRL 72 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~ 72 (95)
.++++|+|+|||+||++|+++|.++++.++++|++++|++|+||+++++ + ++|+|++.+.+....
T Consensus 463 ~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~--~--~~g~~~~~~~~~~~~ 527 (819)
T PRK09436 463 DQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLL--D--EHGIDLDNWREELAE 527 (819)
T ss_pred cccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCcccc--C--CCCCCHHHHHHHHhh
Confidence 4789999999999999999999999997766699999999999999998 5 889999887766543
No 9
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=99.17 E-value=5.3e-11 Score=89.88 Aligned_cols=66 Identities=24% Similarity=0.325 Sum_probs=57.9
Q ss_pred cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCcccc
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTL 82 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l 82 (95)
+|+..+++|.|||+||+.+++.+.+. ..+||+|+||+|.++ | |+|||++++++. |++.+.++.+
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~---------g~~vv~v~D~~g~~~--~--~~Gld~~~l~~~---~~~~g~l~~~ 91 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEA---------GAKVVAVSDSDGTIY--N--PDGLDVPALLAY---KKEHGSVLGF 91 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHC---------CCEEEEEECCCCeEE--C--CCCCCHHHHHHH---HHhcCCcccC
Confidence 46778999999999999999988764 489999999999999 6 999999999988 7777888877
Q ss_pred cC
Q 034422 83 IG 84 (95)
Q Consensus 83 ~~ 84 (95)
+.
T Consensus 92 ~~ 93 (227)
T cd01076 92 PG 93 (227)
T ss_pred CC
Confidence 64
No 10
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=99.03 E-value=4.6e-10 Score=90.16 Aligned_cols=50 Identities=28% Similarity=0.464 Sum_probs=46.1
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHh-cCCeEEEEEEEcCCcceec
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHAN-LGVHLRVVGVSDSKSLVVA 53 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k-~Gi~lrVvgVaDSk~~l~~ 53 (95)
|+.++|+|+|+|+||++|+++|.++++.+.+ .|++++|++|+||++.+..
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~ 51 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR 51 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc
Confidence 8899999999999999999999999887655 4999999999999999883
No 11
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=98.96 E-value=1.3e-09 Score=84.42 Aligned_cols=71 Identities=30% Similarity=0.454 Sum_probs=57.1
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCC-cccc
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSS-LSTL 82 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~-l~~l 82 (95)
++-.+|+|-|||+||+.+++.+.+ .| .+||+|+||+|.++ | |+|||.++|.++.+.|++.++ ++.+
T Consensus 36 l~g~~vaIqGfGnVG~~~a~~L~e-------~G--akvvaVsD~~G~i~--~--~~Gld~~~l~~l~~~~~~~~~~v~~~ 102 (254)
T cd05313 36 LKGKRVAISGSGNVAQYAAEKLLE-------LG--AKVVTLSDSKGYVY--D--PDGFTGEKLAELKEIKEVRRGRVSEY 102 (254)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH-------CC--CEEEEEECCCceEE--C--CCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 445689999999999999998876 34 89999999999999 6 899999999766665765555 5666
Q ss_pred cCCCC
Q 034422 83 IGGFG 87 (95)
Q Consensus 83 ~~~~~ 87 (95)
...|+
T Consensus 103 ~~~~~ 107 (254)
T cd05313 103 AKKYG 107 (254)
T ss_pred hhcCC
Confidence 65554
No 12
>PLN02477 glutamate dehydrogenase
Probab=98.95 E-value=1.3e-09 Score=89.26 Aligned_cols=65 Identities=26% Similarity=0.271 Sum_probs=55.8
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCccccc
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLI 83 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l~ 83 (95)
++-.+|+|.|||+||+.+++++.+. | .+||||+||+|.++ | |+|||.++|++. |+++++++.++
T Consensus 204 l~g~~VaIqGfGnVG~~~A~~L~e~-------G--akVVaVsD~~G~iy--~--~~GLD~~~L~~~---k~~~g~l~~~~ 267 (410)
T PLN02477 204 IAGQTFVIQGFGNVGSWAAQLIHEK-------G--GKIVAVSDITGAVK--N--ENGLDIPALRKH---VAEGGGLKGFP 267 (410)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHc-------C--CEEEEEECCCCeEE--C--CCCCCHHHHHHH---HHhcCchhccc
Confidence 4456799999999999999988653 4 79999999999999 6 899999999998 87888888775
Q ss_pred C
Q 034422 84 G 84 (95)
Q Consensus 84 ~ 84 (95)
+
T Consensus 268 ~ 268 (410)
T PLN02477 268 G 268 (410)
T ss_pred c
Confidence 4
No 13
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=98.91 E-value=2.4e-09 Score=80.52 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=52.9
Q ss_pred cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCcccc
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTL 82 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l 82 (95)
+|+..+++|.|||+||+.+++++.++ ..++|+|+||++.++ | | |||.+++++. ++..+++..+
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~---------G~~vV~vsD~~g~i~--~--~-Gld~~~l~~~---~~~~~~~~~~ 82 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEE---------GGKVLAVSDPDGYIY--D--P-GITTEELINY---AVALGGSARV 82 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHc---------CCEEEEEEcCCCcEE--C--C-CCCHHHHHHH---HHhhCCcccc
Confidence 45667899999999999999999875 489999999999998 6 8 9999999887 4444555544
Q ss_pred c
Q 034422 83 I 83 (95)
Q Consensus 83 ~ 83 (95)
+
T Consensus 83 ~ 83 (217)
T cd05211 83 K 83 (217)
T ss_pred C
Confidence 3
No 14
>PRK09414 glutamate dehydrogenase; Provisional
Probab=98.90 E-value=1.8e-09 Score=89.26 Aligned_cols=68 Identities=29% Similarity=0.388 Sum_probs=56.1
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCC-CCcccc
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGH-SSLSTL 82 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~-g~l~~l 82 (95)
++-.+|+|.||||||+.+++++. +.| .+||+|+||+|.++ | |+|||.++|++. |++. ++++.+
T Consensus 230 l~g~rVaIqGfGnVG~~~A~~L~-------~~G--akVVavsDs~G~iy--n--~~GLD~~~L~~~---k~~~~~~l~~~ 293 (445)
T PRK09414 230 FEGKRVVVSGSGNVAIYAIEKAQ-------QLG--AKVVTCSDSSGYVY--D--EEGIDLEKLKEI---KEVRRGRISEY 293 (445)
T ss_pred cCCCEEEEECCCHHHHHHHHHHH-------HCC--CEEEEEEcCCceEE--C--CCCCCHHHHHHH---HHhcCCchhhh
Confidence 45578999999999999999883 344 89999999999999 6 899999999988 7665 578777
Q ss_pred cCCCC
Q 034422 83 IGGFG 87 (95)
Q Consensus 83 ~~~~~ 87 (95)
+..++
T Consensus 294 ~~~~~ 298 (445)
T PRK09414 294 AEEFG 298 (445)
T ss_pred hhhcC
Confidence 65443
No 15
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.40 E-value=4.9e-07 Score=73.41 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=41.4
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHH-hcCCeEEEEEEEcCCcc
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHA-NLGVHLRVVGVSDSKSL 50 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~-k~Gi~lrVvgVaDSk~~ 50 (95)
|+.|+|+|+|+|.||++++++|.++++.++ +.|.+++|++|+|++..
T Consensus 1 m~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~ 48 (426)
T PRK06349 1 MKPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE 48 (426)
T ss_pred CCeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh
Confidence 788999999999999999999999887654 56999999999998643
No 16
>PRK14030 glutamate dehydrogenase; Provisional
Probab=98.39 E-value=6.5e-07 Score=74.35 Aligned_cols=64 Identities=19% Similarity=0.315 Sum_probs=50.8
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCcc
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLS 80 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~ 80 (95)
++--+|+|-||||||+..++.+.+ .| .+||+|+||+|.+. | |+|||.+.+-.+.+.|++++++.
T Consensus 226 l~g~~vaIQGfGnVG~~aA~~L~e-------~G--akvVavSD~~G~i~--d--~~Gld~~~l~~l~~~k~~~~~~~ 289 (445)
T PRK14030 226 IKGKTVAISGFGNVAWGAATKATE-------LG--AKVVTISGPDGYIY--D--PDGISGEKIDYMLELRASGNDIV 289 (445)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH-------CC--CEEEEEEcCCceEE--C--CCCCCHHHHHHHHHHHHhcCccH
Confidence 344678999999999999997743 45 79999999999999 6 89999998544444487777663
No 17
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=98.36 E-value=4.2e-07 Score=69.54 Aligned_cols=64 Identities=28% Similarity=0.400 Sum_probs=53.6
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCC-cccc
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSS-LSTL 82 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~-l~~l 82 (95)
++--+++|=|||+||+.+++.+.+ +| -+||+|+|++|.++ | |+|||.++|+++ |++.+. +..+
T Consensus 30 l~g~~v~IqGfG~VG~~~a~~l~~-------~G--a~vv~vsD~~G~i~--~--~~Gld~~~l~~~---~~~~~~~v~~~ 93 (244)
T PF00208_consen 30 LEGKRVAIQGFGNVGSHAARFLAE-------LG--AKVVAVSDSSGAIY--D--PDGLDVEELLRI---KEERGSRVDDY 93 (244)
T ss_dssp STTCEEEEEESSHHHHHHHHHHHH-------TT--EEEEEEEESSEEEE--E--TTEEHHHHHHHH---HHHHSSHSTTG
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH-------cC--CEEEEEecCceEEE--c--CCCchHHHHHHH---HHHhCCccccc
Confidence 455678999999999999998876 35 88999999999999 6 999999999998 555565 7766
Q ss_pred c
Q 034422 83 I 83 (95)
Q Consensus 83 ~ 83 (95)
.
T Consensus 94 ~ 94 (244)
T PF00208_consen 94 P 94 (244)
T ss_dssp T
T ss_pred c
Confidence 6
No 18
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=98.34 E-value=1.1e-06 Score=73.33 Aligned_cols=68 Identities=24% Similarity=0.388 Sum_probs=54.2
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCC-CCcccc
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGH-SSLSTL 82 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~-g~l~~l 82 (95)
++--+|+|=|+||||+..++.+.+ .| -+||+|+||+|.++ | |+|||.++|..+.+.|+.. ++++.+
T Consensus 235 l~Gk~VaVqG~GnVg~~aa~~L~e-------~G--akVVavSD~~G~iy--~--~~Gld~~~l~~l~~~k~~~~g~i~~~ 301 (454)
T PTZ00079 235 LEGKTVVVSGSGNVAQYAVEKLLQ-------LG--AKVLTMSDSDGYIH--E--PNGFTKEKLAYLMDLKNVKRGRLKEY 301 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH-------CC--CEEEEEEcCCCcEE--C--CCCCCHHHHHHHHHHHhhcCCcHHhh
Confidence 344678999999999999987754 44 79999999999999 6 8999999986655557654 667766
Q ss_pred cC
Q 034422 83 IG 84 (95)
Q Consensus 83 ~~ 84 (95)
..
T Consensus 302 ~~ 303 (454)
T PTZ00079 302 AK 303 (454)
T ss_pred hh
Confidence 54
No 19
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=98.17 E-value=2.5e-06 Score=57.01 Aligned_cols=36 Identities=36% Similarity=0.696 Sum_probs=30.9
Q ss_pred eeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecc
Q 034422 13 GCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVAS 54 (95)
Q Consensus 13 G~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~ 54 (95)
|||+||++|+++|.++++. ++++|++|+||+ +++..
T Consensus 1 G~G~VG~~l~~~l~~~~~~-----~~~~v~~v~~~~-~~~~~ 36 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-----IDLEVVGVADRS-MLISK 36 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-----CEEEEEEEEESS-EEEET
T ss_pred CCCHHHHHHHHHHHhCccc-----CCEEEEEEEECC-chhhh
Confidence 8999999999999998877 899999999999 77743
No 20
>PRK14031 glutamate dehydrogenase; Provisional
Probab=98.15 E-value=4.4e-06 Score=69.42 Aligned_cols=70 Identities=24% Similarity=0.357 Sum_probs=53.1
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcC-CCCcccc
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAG-HSSLSTL 82 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~-~g~l~~l 82 (95)
++--+|+|.||||||+..++.+.+ .| -+||+|+||+|.+. + ++|||.+++.-+...|+. ++++..+
T Consensus 226 l~g~rVaVQGfGNVG~~aA~~L~e-------~G--AkVVaVSD~~G~iy--~--~~Gld~~~l~~~~~~k~~~~~~v~~~ 292 (444)
T PRK14031 226 LKGKVCLVSGSGNVAQYTAEKVLE-------LG--GKVVTMSDSDGYIY--D--PDGIDREKLDYIMELKNLYRGRIREY 292 (444)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH-------CC--CEEEEEECCCCeEE--C--CCCCCHHHHHHHHHHHhhcCCchhhh
Confidence 344678999999999999987754 45 78999999999998 5 899999988733333554 5566666
Q ss_pred cCCC
Q 034422 83 IGGF 86 (95)
Q Consensus 83 ~~~~ 86 (95)
...+
T Consensus 293 ~~~~ 296 (444)
T PRK14031 293 AEKY 296 (444)
T ss_pred Hhhc
Confidence 5433
No 21
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=98.03 E-value=7.6e-06 Score=67.70 Aligned_cols=63 Identities=29% Similarity=0.403 Sum_probs=50.5
Q ss_pred eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCccccc
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLI 83 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l~ 83 (95)
+-.+|+|=|+||||+.+++.+.+ .| -+||+++||+|.++ | ++|||.+.|++. |++.+++..+.
T Consensus 206 ~G~rVaVQG~GNVg~~aa~~l~~-------~G--Akvva~sds~g~i~--~--~~Gld~~~l~~~---~~~~~~v~~~~ 268 (411)
T COG0334 206 EGARVAVQGFGNVGQYAAEKLHE-------LG--AKVVAVSDSKGGIY--D--EDGLDVEALLEL---KERRGSVAEYA 268 (411)
T ss_pred CCCEEEEECccHHHHHHHHHHHH-------cC--CEEEEEEcCCCcee--c--CCCCCHHHHHHH---hhhhhhHHhhc
Confidence 44678999999999999988763 25 68999999999998 6 899999999965 75555555443
No 22
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=97.75 E-value=5.3e-05 Score=64.19 Aligned_cols=66 Identities=24% Similarity=0.361 Sum_probs=53.3
Q ss_pred eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCcccccC
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLIG 84 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l~~ 84 (95)
+--++++=||||||+.-++.+.+.- =++++|.||+|.++ | |+|||..+|.++.+.| ..+++++.
T Consensus 250 kgkr~~i~G~Gnv~~~aa~~l~~~G---------~kvvavsD~~G~l~--n--p~Gid~~eL~~~~~~k---~~i~~f~~ 313 (514)
T KOG2250|consen 250 KGKRVVIQGFGNVGGHAAKKLSEKG---------AKVVAVSDSKGVLI--N--PDGIDIEELLDLADEK---KTIKSFDG 313 (514)
T ss_pred CceEEEEeCCCchHHHHHHHHHhcC---------CEEEEEEcCceeEE--C--CCCCCHHHHHHHHHhh---cccccccc
Confidence 3457899999999998888776643 47999999999999 6 8899999999997777 66666655
Q ss_pred CC
Q 034422 85 GF 86 (95)
Q Consensus 85 ~~ 86 (95)
+-
T Consensus 314 ~~ 315 (514)
T KOG2250|consen 314 AK 315 (514)
T ss_pred cc
Confidence 43
No 23
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=97.24 E-value=0.00053 Score=62.07 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=47.8
Q ss_pred eeeCEEEEe--eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCccc
Q 034422 5 KKIPSVLMG--CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLST 81 (95)
Q Consensus 5 k~I~v~LiG--~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~ 81 (95)
+.+.+++.| +|+||..-+.+.. .+||||+|++|.++ | |+|||.++|.++ ++.+++++.
T Consensus 662 ~~~Tv~~~Ggp~GDVGgN~~lls~------------~klVAv~D~~G~~~--D--P~GLd~~EL~rl---~~~~~s~~~ 721 (1002)
T PTZ00324 662 EEVTKFQTGGPDGDLGSNELLLSK------------EKTVGIVDGSGVLH--D--PEGLNREELRRL---AHHRLPARE 721 (1002)
T ss_pred cCCEEEEECCCCchHHHHHHHHhC------------CEEEEEEcCCCEEE--C--CCCCCHHHHHHH---HHcCCCccc
Confidence 456789999 9999999887631 49999999999999 7 999999999998 444555653
No 24
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.92 E-value=0.0012 Score=50.93 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=33.5
Q ss_pred CCcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422 1 MATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK 48 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk 48 (95)
|.+|+.++|.|||+|.+|+.+++.+.+.. -++++++|+|+.
T Consensus 1 ~~~m~~irIGIIG~G~IG~~~a~~L~~~~-------~~~el~aV~dr~ 41 (271)
T PRK13302 1 MSSRPELRVAIAGLGAIGKAIAQALDRGL-------PGLTLSAVAVRD 41 (271)
T ss_pred CCCCCeeEEEEECccHHHHHHHHHHHhcC-------CCeEEEEEECCC
Confidence 78999999999999999999998876531 136788888864
No 25
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.74 E-value=0.0015 Score=52.58 Aligned_cols=37 Identities=27% Similarity=0.535 Sum_probs=30.7
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK 48 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk 48 (95)
|+.|+|+++|+|++|+..++.+.+.. ++++|||.|++
T Consensus 1 M~kIRVgIVG~GnIGr~~a~al~~~p--------d~ELVgV~dr~ 37 (324)
T TIGR01921 1 MSKIRAAIVGYGNLGRSVEKAIQQQP--------DMELVGVFSRR 37 (324)
T ss_pred CCCcEEEEEeecHHHHHHHHHHHhCC--------CcEEEEEEcCC
Confidence 67899999999999999888776422 47899998876
No 26
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=95.69 E-value=0.015 Score=37.86 Aligned_cols=36 Identities=28% Similarity=0.567 Sum_probs=28.9
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS 49 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~ 49 (95)
|+|.+||+|..|+..++.+.+..+ +.+++||+|.+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~-------~~~v~~v~d~~~ 36 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSP-------DFEVVAVCDPDP 36 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTT-------TEEEEEEECSSH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCC-------CcEEEEEEeCCH
Confidence 689999999999998877766533 259999999754
No 27
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.63 E-value=0.016 Score=39.58 Aligned_cols=35 Identities=26% Similarity=0.523 Sum_probs=30.9
Q ss_pred eCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422 7 IPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS 49 (95)
Q Consensus 7 I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~ 49 (95)
|+|+|+|+ |..|+.+++.+.+.. +++++++.|++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~--------~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESP--------GFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHST--------TEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC--------CcEEEEEEecCC
Confidence 68999999 999999999988744 389999999987
No 28
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=95.35 E-value=0.023 Score=40.94 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=28.1
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS 47 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS 47 (95)
|+|.|-|||-+||.+++.+..+. +++||+|.|.
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~--------~~evvaInd~ 33 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQP--------DIEVVAINDP 33 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTST--------TEEEEEEEES
T ss_pred CEEEEECCCcccHHHHHhhcccc--------eEEEEEEecc
Confidence 68999999999999999998332 4899999883
No 29
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=95.27 E-value=0.025 Score=45.59 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=30.0
Q ss_pred CCcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422 1 MATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS 47 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS 47 (95)
|+..+ ++|+|+|||.+|+..++.+.+. =++++|+|+|+
T Consensus 1 ~~~~~-lrVaI~G~GrIGr~~~r~~~~~--------~~velvaI~D~ 38 (338)
T PLN02358 1 MADKK-IRIGINGFGRIGRLVARVVLQR--------DDVELVAVNDP 38 (338)
T ss_pred CCCCc-eEEEEEeecHHHHHHHHHHhhC--------CCcEEEEEeCC
Confidence 45553 8999999999999999887541 15899999984
No 30
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.17 E-value=0.019 Score=45.70 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=28.5
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK 48 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk 48 (95)
++|+|+|+|.+|+.+++.+.++. +++|+||+|++
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~--------d~eLvav~d~~ 35 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQP--------DMELVGVAKTK 35 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCC--------CcEEEEEECCC
Confidence 68999999999999999887631 48899999864
No 31
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.15 E-value=0.021 Score=45.63 Aligned_cols=37 Identities=22% Similarity=0.445 Sum_probs=29.9
Q ss_pred cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS 47 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS 47 (95)
.|+.+++.|||+|++|+.++..+.+. . ++++++|+|.
T Consensus 1 ~m~klrVAIIGtG~IGt~hm~~l~~~------~--~velvAVvdi 37 (302)
T PRK08300 1 MMSKLKVAIIGSGNIGTDLMIKILRS------E--HLEPGAMVGI 37 (302)
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHhcC------C--CcEEEEEEeC
Confidence 37889999999999999988877651 1 4788999864
No 32
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=94.75 E-value=0.031 Score=42.76 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=19.6
Q ss_pred eCEEEEeeccccHHHHHHHHhh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
++|.|+|||.+|+.++++|.+.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~ 23 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD 23 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC
Confidence 5899999999999999998763
No 33
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=94.75 E-value=0.029 Score=40.06 Aligned_cols=32 Identities=28% Similarity=0.530 Sum_probs=26.8
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD 46 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD 46 (95)
++|+|+|||.+|+.+++++.+. -++++++|.|
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~--------~~~~lvai~d 32 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLER--------PDIEVVAIND 32 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--------CCCEEEEeec
Confidence 4789999999999999987752 1588999988
No 34
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=94.67 E-value=0.036 Score=37.32 Aligned_cols=34 Identities=26% Similarity=0.504 Sum_probs=27.0
Q ss_pred CEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422 8 PSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS 49 (95)
Q Consensus 8 ~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~ 49 (95)
||+|+| .|.||+.|+++|.+ .+ ++.++.++.++.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~-hp-------~~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAE-HP-------DFELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-TS-------TEEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhc-CC-------CccEEEeeeecc
Confidence 589999 99999999998877 22 367777777655
No 35
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.64 E-value=0.04 Score=41.71 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=27.6
Q ss_pred ceeeCEEEEeeccccHH-HHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422 4 LKKIPSVLMGCGGVGRQ-LLQHIVSCRSLHANLGVHLRVVGVSDSKS 49 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~-Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~ 49 (95)
|+.+++.|||+|++++. .+..+.+.... +++++|+|++.
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~-------~~~vav~d~~~ 40 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGG-------LELVAVVDRDP 40 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCc-------eEEEEEecCCH
Confidence 78999999999977753 55555442222 88999988644
No 36
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=94.38 E-value=0.026 Score=43.48 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=39.0
Q ss_pred eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHH
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLS 67 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll 67 (95)
+..+++|||+||.|+||+.-... ++.| .+++++.|.....++.- ..++.-..+-
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~-----~~~~--~~iv~~FDv~~~~VG~~--~~~v~V~~~d 136 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFS-----KKNG--MKIVAAFDVDPDKVGTK--IGDVPVYDLD 136 (211)
T ss_pred cceeEEEEccChHHHHHhcCcch-----hhcC--ceEEEEecCCHHHhCcc--cCCeeeechH
Confidence 56889999999999999975443 4444 88999999987777654 3335444333
No 37
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=94.16 E-value=0.04 Score=45.60 Aligned_cols=34 Identities=29% Similarity=0.497 Sum_probs=27.5
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD 46 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD 46 (95)
++|+|.|||.|||.++|.+.+++ .=.++|++|-|
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~------~~~~evvaINd 94 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRK------DSPLDVVAIND 94 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCC------CCCeEEEEEcC
Confidence 79999999999999999987632 11478898876
No 38
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=94.01 E-value=0.054 Score=41.21 Aligned_cols=35 Identities=26% Similarity=0.531 Sum_probs=28.2
Q ss_pred eCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422 7 IPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS 49 (95)
Q Consensus 7 I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~ 49 (95)
++|+|+|+ |.+|+.+++.+.+.. ++++++++|++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~--------~~elvav~d~~~ 37 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAE--------DLELVAAVDRPG 37 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCC--------CCEEEEEEecCC
Confidence 68999999 999999998876531 378889888754
No 39
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=93.85 E-value=0.077 Score=41.91 Aligned_cols=35 Identities=31% Similarity=0.646 Sum_probs=28.6
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK 48 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk 48 (95)
++|.+||||++|+.+++.+..-+ .++..++|.|++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~-------~~~e~v~v~D~~ 35 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR-------VDFELVAVYDRD 35 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCC-------cceeEEEEecCC
Confidence 36899999999999999998744 367888888864
No 40
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=93.69 E-value=0.081 Score=40.44 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=28.2
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS 49 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~ 49 (95)
++|.|||+|.+|+.+++.+.+.. .++++++|+|++.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~-------~~~elv~v~d~~~ 37 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGR-------INAELYAFYDRNL 37 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCC-------CCeEEEEEECCCH
Confidence 47899999999999998886532 2578888888753
No 41
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=93.66 E-value=0.068 Score=43.60 Aligned_cols=33 Identities=24% Similarity=0.479 Sum_probs=30.0
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD 46 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD 46 (95)
++|+|=|||-+||-+++.+.+|.. +++||||.|
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~-------dieVVaInd 34 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDG-------DIEVVAIND 34 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCC-------CeEEEEEec
Confidence 689999999999999999988654 799999999
No 42
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=93.12 E-value=0.12 Score=42.43 Aligned_cols=40 Identities=33% Similarity=0.521 Sum_probs=30.6
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS 47 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS 47 (95)
|..++|+|=|||-+||.++|.+.++. . .+=+++||||-|.
T Consensus 1 ~m~ikVgINGFGRIGR~v~R~~~~~~-~---~~~~ievVAINd~ 40 (361)
T PTZ00434 1 MAPIKVGINGFGRIGRMVFQAICDQG-L---IGTEIDVVAVVDM 40 (361)
T ss_pred CCceEEEEECcChHHHHHHHHHHHcc-c---CCCCeEEEEEeCC
Confidence 44589999999999999999876521 0 1235999999983
No 43
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=92.98 E-value=0.098 Score=41.35 Aligned_cols=38 Identities=5% Similarity=0.196 Sum_probs=29.4
Q ss_pred eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS 49 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~ 49 (95)
+.+|.|||||.+|+.+++.|.+.. ...+++++|.|+..
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~------~~~~~l~~V~~~~~ 39 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADA------AQPCQLAALTRNAA 39 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCC------CCceEEEEEecCCH
Confidence 468899999999999999986532 22578888887653
No 44
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=92.96 E-value=0.12 Score=41.69 Aligned_cols=35 Identities=23% Similarity=0.503 Sum_probs=27.7
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD 46 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD 46 (95)
++|+|.|||.|||.++|.+.++.. .=++++++|-|
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~-----~~~l~vvaind 36 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGR-----RAEITVVAINE 36 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCC-----CCceEEEEecC
Confidence 578999999999999999776321 12589999975
No 45
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=92.92 E-value=0.12 Score=39.69 Aligned_cols=33 Identities=24% Similarity=0.516 Sum_probs=27.6
Q ss_pred eCEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422 7 IPSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS 47 (95)
Q Consensus 7 I~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS 47 (95)
++|+|+| +|..|+.+++++.+.. ++++++++|+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~--------~~elvav~d~ 35 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAE--------GLQLVAAFER 35 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC--------CCEEEEEEec
Confidence 6899999 6999999999987642 3788999984
No 46
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=92.92 E-value=0.082 Score=38.94 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=29.5
Q ss_pred cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK 48 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk 48 (95)
.....+|+|+|+|.+|+++++.+. +...| ++++|++|.+
T Consensus 81 ~~~~~rV~IIGaG~iG~~l~~~~~-----~~~~g--~~ivgv~D~d 119 (213)
T PRK05472 81 LDRTWNVALVGAGNLGRALLNYNG-----FEKRG--FKIVAAFDVD 119 (213)
T ss_pred CCCCcEEEEECCCHHHHHHHHhhh-----cccCC--cEEEEEEECC
Confidence 345678999999999999988642 12334 7899999864
No 47
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=92.64 E-value=0.16 Score=40.68 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=27.0
Q ss_pred CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD 46 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD 46 (95)
+|+|.|||.|||.+++.+.++.. +-+++|++|.|
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~-----~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGE-----RLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCC-----CCCeEEEEEec
Confidence 58999999999999999775321 12588999987
No 48
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.48 E-value=0.051 Score=41.39 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.2
Q ss_pred CcceeeCEEEEeeccccHHHHHHHHh
Q 034422 2 ATLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.+++.-+|+|+|+|+||...++.+.+
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar 32 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALAR 32 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHH
Confidence 35677899999999999999988765
No 49
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=92.33 E-value=0.15 Score=41.24 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=27.1
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD 46 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD 46 (95)
++|+|=|||-+||.++|.+.++ . +++||+|-|
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~------~--~~~vvaiNd 34 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALER------E--DVEVVAIND 34 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhc------C--CeEEEEecC
Confidence 6899999999999999986642 1 589999987
No 50
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=92.19 E-value=0.15 Score=41.17 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=25.8
Q ss_pred EEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422 9 SVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS 47 (95)
Q Consensus 9 v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS 47 (95)
|+|+|||.+|+.+++.+.++ . +++||||+|.
T Consensus 1 VaInG~GrIGr~varav~~~------~--d~elVaVnD~ 31 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ------D--DMKLVGVTKT 31 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC------C--CcEEEEEecC
Confidence 58999999999999997663 1 4789999994
No 51
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.71 E-value=0.088 Score=35.79 Aligned_cols=23 Identities=22% Similarity=0.606 Sum_probs=19.4
Q ss_pred eeCEEEEeeccccHHHHHHHHhh
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
.-+|+|+|+|++|..+++.+.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~ 24 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS 24 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHh
Confidence 35789999999999999998773
No 52
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=91.65 E-value=0.12 Score=32.60 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=19.0
Q ss_pred CEEEEeeccccHHHHHHHHhhh
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCR 29 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~ 29 (95)
+|.+||+|++|+++++-+.+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g 22 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASG 22 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHHHCC
Confidence 5789999999999999887753
No 53
>PRK07236 hypothetical protein; Provisional
Probab=91.58 E-value=0.21 Score=38.93 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=29.4
Q ss_pred CCcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEE
Q 034422 1 MATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVG 43 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvg 43 (95)
|-.|+..+|+|||-|-+|.+++..+.+ .|+++.|+=
T Consensus 1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~-------~G~~v~v~E 36 (386)
T PRK07236 1 MTHMSGPRAVVIGGSLGGLFAALLLRR-------AGWDVDVFE 36 (386)
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHh-------CCCCEEEEe
Confidence 778999999999999999999988876 455555543
No 54
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=91.57 E-value=0.18 Score=41.00 Aligned_cols=32 Identities=16% Similarity=0.405 Sum_probs=26.9
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD 46 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD 46 (95)
++|.|-|||-+||.+++.+.++ . +++||+|-|
T Consensus 3 ~ki~INGfGRIGR~~~r~~~~~------~--~~~vvaINd 34 (343)
T PRK07729 3 TKVAINGFGRIGRMVFRKAIKE------S--AFEIVAINA 34 (343)
T ss_pred eEEEEECcChHHHHHHHHHhhc------C--CcEEEEecC
Confidence 6899999999999999986641 1 488999977
No 55
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=91.57 E-value=0.21 Score=40.38 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=26.9
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD 46 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD 46 (95)
++|.|=|||-+||.++|.+.++ . +++||+|-|
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~------~--~~~vvaiNd 34 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKR------S--DIEIVAIND 34 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHC------C--CCEEEEEec
Confidence 6899999999999999986541 1 589999977
No 56
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.55 E-value=0.12 Score=37.83 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=20.7
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|+.++|.+||+|++|+++++.+.+
T Consensus 2 m~~~kI~iIG~G~mg~ala~~l~~ 25 (245)
T PRK07634 2 LKKHRILFIGAGRMAEAIFSGLLK 25 (245)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHh
Confidence 556789999999999999988764
No 57
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.52 E-value=0.12 Score=39.92 Aligned_cols=24 Identities=29% Similarity=0.656 Sum_probs=21.6
Q ss_pred eeeCEEEEeeccccHHHHHHHHhh
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
+..+|+|+|+|++|..+++.+++-
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~ 33 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARL 33 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHc
Confidence 467899999999999999999874
No 58
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=91.43 E-value=0.24 Score=39.64 Aligned_cols=26 Identities=27% Similarity=0.449 Sum_probs=22.0
Q ss_pred CCcceeeCEEEEee-ccccHHHHHHHHhh
Q 034422 1 MATLKKIPSVLMGC-GGVGRQLLQHIVSC 28 (95)
Q Consensus 1 ~~~mk~I~v~LiG~-G~VG~~Ll~~I~~~ 28 (95)
|.+| ++|+|+|- |.||++|++++.++
T Consensus 1 m~~~--~~IaIvGATG~vG~eLlrlL~~~ 27 (336)
T PRK05671 1 MSQP--LDIAVVGATGTVGEALVQILEER 27 (336)
T ss_pred CCCC--CEEEEEccCCHHHHHHHHHHhhC
Confidence 5555 78899996 99999999999963
No 59
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.37 E-value=0.09 Score=41.14 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.6
Q ss_pred CcceeeCEEEEeeccccHHHHHHHHh
Q 034422 2 ATLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.+++.-+|+|+|+|+||...++.+++
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar 51 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALAR 51 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHH
Confidence 35677899999999999999998876
No 60
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=91.28 E-value=0.28 Score=41.35 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=28.9
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD 46 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD 46 (95)
|+ ++|.|=|||-|||.++|.+.++ .+=+++||+|-|
T Consensus 74 ~~-ikVgINGFGRIGR~vlR~~~~~------~~~~ievVaINd 109 (442)
T PLN02237 74 AK-LKVAINGFGRIGRNFLRCWHGR------KDSPLDVVVVND 109 (442)
T ss_pred ce-EEEEEECCChHHHHHHHHHHHc------cCCCeEEEEECC
Confidence 54 7999999999999999986642 123589999977
No 61
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=91.27 E-value=0.25 Score=38.41 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.9
Q ss_pred CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|.+|...+|+|||-|.+|.+++-.+.+
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~ 27 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALAD 27 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhc
Confidence 777888999999999999999987654
No 62
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=91.06 E-value=0.17 Score=34.48 Aligned_cols=20 Identities=25% Similarity=0.627 Sum_probs=18.0
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|+|+|+|++|.++++.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~ 20 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR 20 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 58999999999999998866
No 63
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=91.01 E-value=0.14 Score=35.90 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=24.2
Q ss_pred eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS 47 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS 47 (95)
.+++|.+||.|+||++|.+.+.+ .| ..|++|.+.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~-------ag--~~v~~v~sr 42 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALAR-------AG--HEVVGVYSR 42 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHH-------TT--SEEEEESSC
T ss_pred CccEEEEECCCHHHHHHHHHHHH-------CC--CeEEEEEeC
Confidence 46889999999999999998865 24 356666554
No 64
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=90.84 E-value=0.3 Score=40.89 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=27.0
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS 47 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS 47 (95)
++|.|.|||.+||.+++.... + .+++||+|-|.
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~------~--~~i~vvaINdp 118 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATS------R--DDIEVVAVNDP 118 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhh------c--CCcEEEEecCC
Confidence 799999999999999998553 2 24789999873
No 65
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=90.68 E-value=0.28 Score=38.73 Aligned_cols=32 Identities=22% Similarity=0.607 Sum_probs=25.8
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD 46 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD 46 (95)
++|+|||.|++|+.++..+.+.+ ++++++|+|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~--------~~elvaV~d 33 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSE--------HLEMVAMVG 33 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCC--------CcEEEEEEe
Confidence 68999999999998877776522 478888887
No 66
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=90.56 E-value=0.27 Score=39.97 Aligned_cols=32 Identities=31% Similarity=0.398 Sum_probs=27.1
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD 46 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD 46 (95)
++|.|-|||-+||.++|.+.++ . +++||+|-|
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~------~--~~~ivaiNd 34 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTD------P--LVTVVAVND 34 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhc------C--CcEEEEecC
Confidence 6899999999999999986642 1 489999987
No 67
>PRK11579 putative oxidoreductase; Provisional
Probab=90.48 E-value=0.3 Score=38.03 Aligned_cols=35 Identities=29% Similarity=0.298 Sum_probs=25.2
Q ss_pred eeCEEEEeeccccHH-HHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422 6 KIPSVLMGCGGVGRQ-LLQHIVSCRSLHANLGVHLRVVGVSDSK 48 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~-Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk 48 (95)
.++|.|||+|.+|+. .++.+.+. . +++++||+|.+
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~------~--~~~l~av~d~~ 39 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGT------P--GLELAAVSSSD 39 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhC------C--CCEEEEEECCC
Confidence 489999999999974 34443321 1 37999999975
No 68
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.32 E-value=0.17 Score=37.70 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=21.6
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++.-+|+|+|+|++|.++++.+.+
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~ 42 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAA 42 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHH
Confidence 4566789999999999999999865
No 69
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.19 E-value=0.14 Score=37.68 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.0
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++.-+|+|+|+|++|..+++.+.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~ 42 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAG 42 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHH
Confidence 4567789999999999999998876
No 70
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=89.89 E-value=0.42 Score=38.75 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=27.6
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD 46 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD 46 (95)
++|.|=|||-|||.+++.+.++ .+-+++||+|-|
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~------~~~~~~vvaind 35 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGR------ENSQLELVAIND 35 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhc------cCCCeEEEEecC
Confidence 5889999999999999986652 123599999977
No 71
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=89.69 E-value=0.4 Score=38.04 Aligned_cols=33 Identities=24% Similarity=0.481 Sum_probs=25.7
Q ss_pred eCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422 7 IPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS 47 (95)
Q Consensus 7 I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS 47 (95)
++|+|+|. |.||+.+++++.+. + +.+++++++.
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~-p-------~~elv~v~~~ 36 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNH-P-------EVEIVAVTSR 36 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcC-C-------CceEEEEECc
Confidence 68999997 99999999999742 1 3567777763
No 72
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=89.49 E-value=0.15 Score=37.97 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.1
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++.-+|+|+|+|++|..+++.+.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~ 49 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALAR 49 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHH
Confidence 4677899999999999999999865
No 73
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.28 E-value=0.24 Score=37.60 Aligned_cols=25 Identities=8% Similarity=0.348 Sum_probs=20.4
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
|+..+|.+||+|++|+++++.+.++
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~ 25 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHA 25 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHC
Confidence 3344689999999999999988754
No 74
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=89.01 E-value=0.33 Score=37.25 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|..|..-+|.|||+|.+|..++..+.+
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~ 27 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRR 27 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHh
Confidence 566766789999999999999998865
No 75
>PRK08328 hypothetical protein; Provisional
Probab=88.86 E-value=0.17 Score=38.00 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=20.9
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++.-+|+|+|+|++|.++++.+.+
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~ 48 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAA 48 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHH
Confidence 3455689999999999999988865
No 76
>PRK06153 hypothetical protein; Provisional
Probab=88.61 E-value=0.27 Score=40.81 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.2
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.+.-+|+|+||||+|..+++++++
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR 197 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAK 197 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHH
Confidence 355689999999999999999887
No 77
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=88.58 E-value=0.68 Score=37.26 Aligned_cols=33 Identities=33% Similarity=0.578 Sum_probs=26.8
Q ss_pred CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD 46 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD 46 (95)
+|.|-|||-+||.+++.+.++ .+-+++||+|-|
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~------~~~~~~ivaind 33 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEK------QGLDLEVVAIND 33 (327)
T ss_pred CEEEEccChHHHHHHHHHHhc------cCCceEEEEEec
Confidence 589999999999999987652 123689999988
No 78
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=88.57 E-value=0.19 Score=37.17 Aligned_cols=25 Identities=20% Similarity=0.493 Sum_probs=21.8
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++.-+|+|+|+|++|+.+++.+.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~ 42 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLAR 42 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHH
Confidence 4567789999999999999998865
No 79
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=88.15 E-value=0.32 Score=36.79 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.3
Q ss_pred eeeCEEEEeeccccHHHHHHHHhh
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
++++|.+||+|+.|.++++-+.+.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~ 25 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENS 25 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhC
Confidence 334589999999999999999864
No 80
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=88.08 E-value=0.53 Score=36.21 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=22.6
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
|+.++|+|||-|-.|.+++-.+.++
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~ 25 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRL 25 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhc
Confidence 7889999999999999999888764
No 81
>PRK08013 oxidoreductase; Provisional
Probab=87.85 E-value=0.6 Score=36.74 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.9
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|+..+|+|+|.|.+|.+++-.+.+
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~ 24 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQG 24 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhh
Confidence 677899999999999999877654
No 82
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.73 E-value=0.36 Score=35.54 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=20.1
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|+--++.|+|+|+||+.+++.+.+
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~ 49 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLE 49 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH
Confidence 444568999999999999998765
No 83
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.55 E-value=0.44 Score=34.33 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=18.2
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|+|+|+|++|..+++.+.+
T Consensus 1 ~VlViG~GglGs~ia~~La~ 20 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR 20 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 58999999999999999876
No 84
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=87.53 E-value=0.65 Score=36.45 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=25.0
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV 42 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv 42 (95)
|...+|+|+|.|.+|.+++-.+. ++|+++.|+
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~-------~~G~~v~vi 33 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALK-------ESDLRIAVI 33 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHH-------hCCCEEEEE
Confidence 66789999999999999997654 357665544
No 85
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=87.15 E-value=1.3 Score=37.85 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=31.0
Q ss_pred eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS 49 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~ 49 (95)
..-+|+|-|||-+||.++|.+.++. ..|=+++||||.+.++
T Consensus 126 ~~~~V~InGFGRIGR~v~R~~~~~~----~~~~~l~lvAIn~~~n 166 (477)
T PRK08289 126 EPRDVVLYGFGRIGRLLARLLIEKT----GGGNGLRLRAIVVRKG 166 (477)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcc----CCCCCeEEEEEecCCC
Confidence 4568999999999999999976511 1245799999976443
No 86
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=87.00 E-value=0.39 Score=34.34 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=25.4
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcc
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSL 50 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~ 50 (95)
-.|.|+|+|.||+++++.+.. +..+|++...+...
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~---------fG~~V~~~d~~~~~ 71 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKA---------FGMRVIGYDRSPKP 71 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHH---------TT-EEEEEESSCHH
T ss_pred CEEEEEEEcCCcCeEeeeeec---------CCceeEEecccCCh
Confidence 467999999999999987643 33577777766543
No 87
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=86.86 E-value=0.38 Score=35.36 Aligned_cols=24 Identities=21% Similarity=0.606 Sum_probs=20.7
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
++.-+|+++|+|++|.++++.+..
T Consensus 17 L~~s~VlviG~gglGsevak~L~~ 40 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVL 40 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHH
Confidence 456789999999999999998865
No 88
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=86.53 E-value=0.29 Score=38.63 Aligned_cols=27 Identities=26% Similarity=0.577 Sum_probs=22.8
Q ss_pred CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|.+|+.-+|+|+|+|++|.+.++.|..
T Consensus 14 q~kL~~s~VLIvG~gGLG~EiaKnLal 40 (286)
T cd01491 14 MKKLQKSNVLISGLGGLGVEIAKNLIL 40 (286)
T ss_pred HHHHhcCcEEEEcCCHHHHHHHHHHHH
Confidence 346778899999999999999987753
No 89
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=86.45 E-value=0.42 Score=36.31 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.4
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++.-+|+|+|+|++|..+++.+.+
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~ 45 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAA 45 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHH
Confidence 3466789999999999999998875
No 90
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=86.40 E-value=0.6 Score=37.17 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=25.3
Q ss_pred eCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422 7 IPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK 48 (95)
Q Consensus 7 I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk 48 (95)
++|+|+|. |.||+.+++++.+. + .++++++++|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-P-------~~el~~l~~s~ 35 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-P-------EVEITYLVSSR 35 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-C-------CceEEEEeccc
Confidence 47899999 99999999999842 1 24566665554
No 91
>PRK06184 hypothetical protein; Provisional
Probab=86.10 E-value=0.83 Score=37.19 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=25.5
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV 42 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv 42 (95)
|+..+|+|||.|.+|..++-.+.+ +|+++.|+
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~-------~Gi~v~vi 32 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELAR-------RGVSFRLI 32 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHH-------CCCcEEEE
Confidence 678899999999999999977654 46665544
No 92
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=86.05 E-value=0.87 Score=35.56 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.0
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|+..+|+|+|-|.+|.+++-.+.+
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~ 24 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAK 24 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHh
Confidence 667899999999999999987754
No 93
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=86.04 E-value=0.33 Score=39.27 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=21.6
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++.-+|+|+|+|++|..+++.+..
T Consensus 39 ~L~~~~VlviG~GGlGs~va~~La~ 63 (392)
T PRK07878 39 RLKNARVLVIGAGGLGSPTLLYLAA 63 (392)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHH
Confidence 4567899999999999999998865
No 94
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=86.02 E-value=0.88 Score=29.55 Aligned_cols=43 Identities=28% Similarity=0.465 Sum_probs=28.7
Q ss_pred eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceeccc
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASD 55 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d 55 (95)
|..+++|+|.|+.|++++.... ..+| +++++++|...-.+...
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~------~~~g--~~i~~~~dv~~~~~G~~ 44 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGF------SMRG--FGIVAVFDVDPEKIGKE 44 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHH------HHHC--ECEEEEEEECTTTTTSE
T ss_pred CCCeEEEECCCCcHHHHHHhHH------HHcC--CCCEEEEEcCCCccCcE
Confidence 4568999999999999983322 2234 56668887655554433
No 95
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=85.86 E-value=0.6 Score=38.26 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=35.2
Q ss_pred eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCC
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVF 57 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~ 57 (95)
.+++++-|+|+||.+.++-+.++++ +.+||.-|++.....+|+.
T Consensus 2 ~~~vvqyGtG~vGv~air~l~akpe--------~elvgawv~s~ak~Gkdlg 45 (350)
T COG3804 2 SLRVVQYGTGSVGVAAIRGLLAKPE--------LELVGAWVHSAAKSGKDLG 45 (350)
T ss_pred CceeEEeccchHHHHHHHHHHcCCC--------CceEEEEecCcccccccHH
Confidence 5789999999999988877665543 6789999998888777643
No 96
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=85.81 E-value=0.98 Score=34.83 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=20.5
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|+..+|.|+|.|.||..++-.+.+
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~ 26 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLAR 26 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHH
Confidence 344578999999999999998876
No 97
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=85.71 E-value=3.6 Score=31.58 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=37.9
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhc--CCeEEEEEEEcCCcceecccCCCCCCCHHHHHHH
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANL--GVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEI 69 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~--Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~ 69 (95)
-+|++.++|-|= -.|.|+. -++++++ ++++|+|-|.|--.+- ..+.+|.||++++.-++
T Consensus 35 PDVVlA~aGd~p--T~E~lAA-~~lLr~~~P~lkiRvVNVvDLm~L~-~~~~hPhglsd~~Fd~l 95 (203)
T PF09363_consen 35 PDVVLACAGDVP--TLEVLAA-ASLLREHFPELKIRVVNVVDLMKLQ-PPSEHPHGLSDEEFDAL 95 (203)
T ss_dssp -SEEEEEESHHH--HHHHHHH-HHHHHHT--T--EEEEEESBGGGGS--TTT-TTS--HHHHHHH
T ss_pred CCEEEEecCchh--hHHHHHH-HHHHHHhccCceEEEEEEeEccccC-CCCCCCCcCCHHHHHHh
Confidence 478999999874 3455555 4456665 9999999999953333 23567999999998877
No 98
>PRK06185 hypothetical protein; Provisional
Probab=85.55 E-value=1.1 Score=34.82 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=22.9
Q ss_pred CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|.+....+|+|||-|.+|.+++-.+.+
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~ 27 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLAR 27 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHh
Confidence 666778999999999999999877653
No 99
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=85.42 E-value=0.45 Score=37.82 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=21.3
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+.+.-.|+++|.|+||+-.++.+++
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaR 51 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALAR 51 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHH
Confidence 3456689999999999999998876
No 100
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=85.32 E-value=1.9 Score=35.63 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=38.2
Q ss_pred eCEEEEeeccccHHHHHHHHh--hhH--------HHHhc-CC---eEEEEEEEcCCcceecccCCCCCCCHHHHH
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS--CRS--------LHANL-GV---HLRVVGVSDSKSLVVASDVFTKEFNDNLLS 67 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~--~~~--------~~~k~-Gi---~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll 67 (95)
|+|+|+|.||+.++|++=|.. +.+ .+.+. |. |+.+|+-.| +|+. .=|.|+.+++
T Consensus 1 irvai~GvGncaSslvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafD-----Vd~~--KVGkdlseai 68 (351)
T TIGR03450 1 VRVAIVGVGNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFD-----VDAK--KVGFDLSDAI 68 (351)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEe-----cccc--ccCccHHHHH
Confidence 689999999999999997754 221 12222 44 899999888 5333 6677777654
No 101
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=85.27 E-value=1.1 Score=36.20 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=26.9
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD 46 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD 46 (95)
++|.|.|||.+|+.+++.+.++ . +++++++-|
T Consensus 3 ikigInG~GRiGr~v~r~~~~~------~--~~~ivaind 34 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDW------P--ELEFVQIND 34 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhC------C--CcEEEEecC
Confidence 7899999999999999997652 1 488898877
No 102
>PLN02602 lactate dehydrogenase
Probab=85.20 E-value=0.57 Score=37.78 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=19.2
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.+|+|||.|+||.+++-.+..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~ 58 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT 58 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh
Confidence 699999999999999998775
No 103
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=85.12 E-value=0.55 Score=37.52 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=21.5
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++.-+|+|+|+|++|..+++.+.+
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~ 45 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVR 45 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHH
Confidence 4567789999999999999998764
No 104
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=85.00 E-value=1.8 Score=34.33 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=36.4
Q ss_pred cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeE----EEEEEEcCCcceecc
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHL----RVVGVSDSKSLVVAS 54 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~l----rVvgVaDSk~~l~~~ 54 (95)
.++..+|+++|.|.-|-+.+++|... +.+.|+.. +=+-+.||+|++.+.
T Consensus 22 ~l~d~~iv~~GAGsAg~gia~ll~~~---~~~~G~~~eeA~~~i~~vD~~Gll~~~ 74 (279)
T cd05312 22 PLSDQRILFLGAGSAGIGIADLIVSA---MVREGLSEEEARKKIWLVDSKGLLTKD 74 (279)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHH---HHHcCCChhhccCeEEEEcCCCeEeCC
Confidence 34567899999999999999999763 23456632 233677999999854
No 105
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=84.77 E-value=1.1 Score=34.71 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=21.4
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.|+..+|+|||-|-+|.+++-.+.+
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~ 28 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALAR 28 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhc
Confidence 3778899999999999999977653
No 106
>PRK08223 hypothetical protein; Validated
Probab=84.73 E-value=0.42 Score=38.00 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=20.3
Q ss_pred cceeeCEEEEeeccccHHHHHHHH
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~ 26 (95)
+++.-+|+|+|+|++|...++.++
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA 47 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLA 47 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHH
Confidence 456778999999999999887664
No 107
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=84.54 E-value=0.61 Score=37.23 Aligned_cols=25 Identities=16% Similarity=0.445 Sum_probs=21.4
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++.-+|+|+|+|++|..+++.+.+
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~ 45 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVR 45 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHH
Confidence 3556689999999999999998875
No 108
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=84.50 E-value=1.2 Score=35.63 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=31.2
Q ss_pred eeCEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCccee
Q 034422 6 KIPSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVV 52 (95)
Q Consensus 6 ~I~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~ 52 (95)
.++|+|+| -|.||++|++++.+.. +++++.++.|++.-+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp--------~~~l~~~~s~~~~~~ 41 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRS--------DIELLSIPEAKRKDA 41 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCC--------CeEEEEEecCCCCcc
Confidence 36789999 7999999999988754 578888887765433
No 109
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=84.45 E-value=1.3 Score=30.40 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=25.0
Q ss_pred EEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422 9 SVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS 49 (95)
Q Consensus 9 v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~ 49 (95)
|+|+|- |.||+.+++++.++. .+|++++.+..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---------~~V~~~~R~~~ 33 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---------HEVTALVRSPS 33 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---------SEEEEEESSGG
T ss_pred eEEECCCChHHHHHHHHHHHCC---------CEEEEEecCch
Confidence 689995 999999999998754 46666766644
No 110
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=84.31 E-value=1.6 Score=30.54 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=15.6
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||+|..|+++++.+.+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~ 22 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAK 22 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHH
T ss_pred EEEEEchHHHHHHHHHHHHh
Confidence 45999999999999999865
No 111
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=84.28 E-value=0.61 Score=35.40 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=20.6
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.+.-+|+|+|+|++|..+++.+..
T Consensus 30 L~~~~VliiG~GglGs~va~~La~ 53 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAA 53 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHH
Confidence 355689999999999999998865
No 112
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=84.11 E-value=0.77 Score=35.08 Aligned_cols=20 Identities=35% Similarity=0.780 Sum_probs=18.2
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|+|+|+|++|.++++.+..
T Consensus 1 kVlvvG~GGlG~eilk~La~ 20 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLAL 20 (234)
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 58999999999999999875
No 113
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=84.08 E-value=0.78 Score=36.36 Aligned_cols=20 Identities=30% Similarity=0.723 Sum_probs=18.1
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|+|+|+|++|.++++.++.
T Consensus 1 kVlVVGaGGlG~eilknLal 20 (291)
T cd01488 1 KILVIGAGGLGCELLKNLAL 20 (291)
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 58999999999999998865
No 114
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=84.05 E-value=0.85 Score=29.48 Aligned_cols=20 Identities=25% Similarity=0.655 Sum_probs=17.2
Q ss_pred EEEEeeccccHHHHHHHHhh
Q 034422 9 SVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 9 v~LiG~G~VG~~Ll~~I~~~ 28 (95)
|+|+|+|.+|+.+++.+.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~ 20 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG 20 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT
T ss_pred eEEEcCCHHHHHHHHHHHhC
Confidence 68999999999999999883
No 115
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=83.75 E-value=0.98 Score=34.73 Aligned_cols=20 Identities=20% Similarity=0.523 Sum_probs=17.6
Q ss_pred EEEEeeccccHHHHHHHHhh
Q 034422 9 SVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 9 v~LiG~G~VG~~Ll~~I~~~ 28 (95)
+.|+|.|++|.+|++.+.+.
T Consensus 4 ~~i~GtGniG~alA~~~a~a 23 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKA 23 (211)
T ss_pred EEEeccChHHHHHHHHHHhC
Confidence 49999999999999988763
No 116
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=83.67 E-value=1.4 Score=36.56 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=24.7
Q ss_pred CEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEE-cCC
Q 034422 8 PSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVS-DSK 48 (95)
Q Consensus 8 ~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVa-DSk 48 (95)
+|+|+| .|.||++-++.+.+.++ .++|+|++ |++
T Consensus 3 ~VaILGsTGSIG~~tL~vi~~~p~-------~f~VvaLaa~~n 38 (385)
T PRK05447 3 RITILGSTGSIGTQTLDVIRRNPD-------RFRVVALSAGKN 38 (385)
T ss_pred eEEEEcCChHHHHHHHHHHHhCcc-------ccEEEEEEcCCC
Confidence 469999 99999999999876433 25666666 443
No 117
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=83.64 E-value=0.49 Score=37.79 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.6
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++.-+|+|+|+|++|+.+++.+.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~ 156 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAA 156 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHH
Confidence 4567789999999999999998854
No 118
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=83.35 E-value=0.67 Score=34.11 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=21.1
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++.-+|+++|+|++|.++++.+..
T Consensus 18 ~L~~s~VlIiG~gglG~evak~La~ 42 (197)
T cd01492 18 RLRSARILLIGLKGLGAEIAKNLVL 42 (197)
T ss_pred HHHhCcEEEEcCCHHHHHHHHHHHH
Confidence 3466789999999999999998865
No 119
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=83.31 E-value=1.1 Score=34.14 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=20.8
Q ss_pred CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|..|++ |.+||.|.+|.+++..+..
T Consensus 1 ~~~~~~--V~vIG~G~mG~~iA~~l~~ 25 (295)
T PLN02545 1 MAEIKK--VGVVGAGQMGSGIAQLAAA 25 (295)
T ss_pred CCCcCE--EEEECCCHHHHHHHHHHHh
Confidence 556664 6999999999999998765
No 120
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=83.15 E-value=0.51 Score=37.74 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=21.1
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++.-+|+|+|+|++|..+++.+..
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~ 49 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAG 49 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHH
Confidence 3566789999999999999988764
No 121
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.14 E-value=1 Score=31.63 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=21.9
Q ss_pred CCcceeeCEEEEe-eccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG-~G~VG~~Ll~~I~~ 27 (95)
|..|+.-+++|.| .|++|+++++++.+
T Consensus 1 ~~~~~~~~vlItGasg~iG~~l~~~l~~ 28 (249)
T PRK12825 1 MGSLMGRVALVTGAARGLGRAIALRLAR 28 (249)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHH
Confidence 6666666788887 59999999999875
No 122
>PRK07411 hypothetical protein; Validated
Probab=82.98 E-value=0.73 Score=37.37 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=21.4
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++.-+|+|+|+|++|..+++.+..
T Consensus 35 ~L~~~~VlivG~GGlG~~va~~La~ 59 (390)
T PRK07411 35 RLKAASVLCIGTGGLGSPLLLYLAA 59 (390)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHH
Confidence 4566789999999999999988764
No 123
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=82.80 E-value=0.84 Score=31.83 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.5
Q ss_pred eCEEEEee-ccccHHHHHHHHhh
Q 034422 7 IPSVLMGC-GGVGRQLLQHIVSC 28 (95)
Q Consensus 7 I~v~LiG~-G~VG~~Ll~~I~~~ 28 (95)
.||.|+|. |+||++++-.+..+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~ 23 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ 23 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT
T ss_pred CEEEEECCCChHHHHHHHHHHhC
Confidence 37899999 99999999988875
No 124
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.67 E-value=1.6 Score=32.61 Aligned_cols=20 Identities=10% Similarity=0.393 Sum_probs=17.9
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||+|++|+++++-+.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~ 21 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLT 21 (258)
T ss_pred eEEEECcCHHHHHHHHHHHh
Confidence 58999999999999998764
No 125
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.51 E-value=0.9 Score=33.79 Aligned_cols=21 Identities=10% Similarity=0.336 Sum_probs=18.3
Q ss_pred CEEEEeeccccHHHHHHHHhh
Q 034422 8 PSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
+|.+||+|++|+.+++.+.+.
T Consensus 4 ~I~iIG~G~mG~~la~~l~~~ 24 (267)
T PRK11880 4 KIGFIGGGNMASAIIGGLLAS 24 (267)
T ss_pred EEEEEechHHHHHHHHHHHhC
Confidence 579999999999999988653
No 126
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=82.27 E-value=1.4 Score=27.84 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=20.9
Q ss_pred eeeCEEEEeeccccHHHHHHHHhhh
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVSCR 29 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~~~ 29 (95)
..-++.++|+|++|+..++.+.+..
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~ 46 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEG 46 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC
Confidence 3456899999999999999987753
No 127
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=82.12 E-value=2.2 Score=32.08 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=32.5
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceec
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVA 53 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~ 53 (95)
.+.-+++++|.|+.|++.++++.+ .|+.-+=+-|.|+++.+..
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~-------~G~~~~~i~ivdr~gl~~~ 65 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLA-------AGAKPENIVVVDSKGVIYE 65 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHH-------cCcCcceEEEEeCCCcccc
Confidence 344578999999999999999964 2543235678899887763
No 128
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=82.12 E-value=1.8 Score=33.02 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=21.4
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
|+.++|+|||-|-+|.+.+-++.++
T Consensus 1 ~~~~dv~IIGgGi~G~s~A~~L~~~ 25 (376)
T PRK11259 1 TMRYDVIVIGLGSMGSAAGYYLARR 25 (376)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHC
Confidence 5668999999999999999777663
No 129
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=81.86 E-value=1.1 Score=35.85 Aligned_cols=19 Identities=37% Similarity=0.877 Sum_probs=17.4
Q ss_pred CEEEEeeccccHHHHHHHH
Q 034422 8 PSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~ 26 (95)
+|+|+|+|++|.++++.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLa 19 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLV 19 (312)
T ss_pred CEEEECCCHHHHHHHHHHH
Confidence 5899999999999999886
No 130
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=81.67 E-value=1.8 Score=35.68 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=26.5
Q ss_pred CCcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422 1 MATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV 42 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv 42 (95)
|++....+|+|||.|.+|..++-.+.+ +|+++.|+
T Consensus 18 ~~~~~~~dVlIVGaGpaGl~lA~~L~~-------~G~~v~vi 52 (547)
T PRK08132 18 ADDPARHPVVVVGAGPVGLALAIDLAQ-------QGVPVVLL 52 (547)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHh-------CCCcEEEE
Confidence 345577899999999999999987654 46665544
No 131
>PLN00198 anthocyanidin reductase; Provisional
Probab=81.60 E-value=2.2 Score=32.46 Aligned_cols=22 Identities=14% Similarity=0.301 Sum_probs=18.4
Q ss_pred eCEEEEe-eccccHHHHHHHHhh
Q 034422 7 IPSVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 7 I~v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
-+|+|.| .|.||+.|++.+.++
T Consensus 10 ~~vlItG~~GfIG~~l~~~L~~~ 32 (338)
T PLN00198 10 KTACVIGGTGFLASLLIKLLLQK 32 (338)
T ss_pred CeEEEECCchHHHHHHHHHHHHC
Confidence 3488998 899999999998763
No 132
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=81.44 E-value=0.95 Score=35.89 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=21.0
Q ss_pred ceeeCEEEEe-eccccHHHHHHHHh
Q 034422 4 LKKIPSVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG-~G~VG~~Ll~~I~~ 27 (95)
|..++|+|+| .|.+|++|++.+.+
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~ 25 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLAN 25 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHc
Confidence 4568999998 99999999998884
No 133
>PRK09126 hypothetical protein; Provisional
Probab=81.11 E-value=1.9 Score=33.26 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.6
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|...+|+|||-|..|.+++..+.+
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~ 24 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAG 24 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHh
Confidence 557899999999999999887654
No 134
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=80.98 E-value=1.2 Score=37.39 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=18.2
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|+|+|+|++|.++++.++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal 20 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFAL 20 (435)
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 58999999999999998876
No 135
>PLN02256 arogenate dehydrogenase
Probab=80.39 E-value=1.2 Score=34.96 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.2
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|+..+|.+||+|.+|+.+++.+.+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~ 57 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVK 57 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHh
Confidence 4566779999999999999998865
No 136
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=79.87 E-value=1.3 Score=36.59 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=19.3
Q ss_pred CEEEEeeccccHHHHHHHHhhh
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCR 29 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~ 29 (95)
+|+|+|+|+||+..++-+++..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~ 24 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNG 24 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCC
Confidence 5799999999999999888754
No 137
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=79.72 E-value=1.9 Score=34.74 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=27.1
Q ss_pred eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS 49 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~ 49 (95)
++++|.+||+ +.|+..++.+.+..+ ++++|||+|++.
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~-------~~eLvaV~d~~~ 38 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPE-------RFELAGILAQGS 38 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCC-------CcEEEEEEcCCH
Confidence 4689999999 678877776655321 478899999643
No 138
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=79.64 E-value=1.3 Score=31.00 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.5
Q ss_pred CEEEEeeccccHHHHHHHHhhh
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCR 29 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~ 29 (95)
||+++|.|+-|.+++..+.++-
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g 22 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG 22 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT
T ss_pred CEEEECcCHHHHHHHHHHHHcC
Confidence 5899999999999999998743
No 139
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=79.62 E-value=2.9 Score=25.73 Aligned_cols=29 Identities=28% Similarity=0.525 Sum_probs=22.2
Q ss_pred CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEE
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVG 43 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvg 43 (95)
+++++|-|.+|-+++..+ .+.|.++.++-
T Consensus 1 ~vvViGgG~ig~E~A~~l-------~~~g~~vtli~ 29 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEAL-------AELGKEVTLIE 29 (80)
T ss_dssp EEEEESSSHHHHHHHHHH-------HHTTSEEEEEE
T ss_pred CEEEECcCHHHHHHHHHH-------HHhCcEEEEEe
Confidence 579999999999999988 33565665543
No 140
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=79.57 E-value=1.4 Score=33.12 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=19.5
Q ss_pred CEEEEeeccccHHHHHHHHhh
Q 034422 8 PSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
+++++|+|-||+.+++.+.++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~ 22 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE 22 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC
Confidence 579999999999999999986
No 141
>PRK07806 short chain dehydrogenase; Provisional
Probab=79.42 E-value=1.7 Score=31.03 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=21.9
Q ss_pred CCcceeeCEEEEee-ccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
|.+|+.-.++|.|. |++|+++++++.+
T Consensus 1 ~~~~~~k~vlItGasggiG~~l~~~l~~ 28 (248)
T PRK07806 1 MGDLPGKTALVTGSSRGIGADTAKILAG 28 (248)
T ss_pred CCCCCCcEEEEECCCCcHHHHHHHHHHH
Confidence 56676667889995 9999999998865
No 142
>KOG3217 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=79.39 E-value=13 Score=27.72 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=52.1
Q ss_pred CCcceeeCEEEEeeccccHHHH-HHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCC-CCCCHHHHHHHHhhhcCCCC
Q 034422 1 MATLKKIPSVLMGCGGVGRQLL-QHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFT-KEFNDNLLSEICRLKAGHSS 78 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G~VG~~Ll-~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~-~GLd~~~ll~~~~~K~~~g~ 78 (95)
|+-|++..|..+++||+=|+-+ |.+. |+..+++|++=+. ..||.|.. +|+. +.=|+..+--+ |+.|=.
T Consensus 1 ~~e~~~~svlFvclGNiCRSP~AEaVF--r~~v~K~~l~~~~--~iDSagt~---~yh~G~~PD~R~~s~l---K~hGI~ 70 (159)
T KOG3217|consen 1 MAEQATKSVLFVCLGNICRSPIAEAVF--RDLVKKRNLSEEW--HIDSAGTS---GYHTGRSPDPRTLSIL---KKHGIK 70 (159)
T ss_pred CCcccceEEEEEEecccccCHHHHHHH--HHHHHHcCcceee--eecccccc---ccccCCCCChHHHHHH---HHcCCc
Confidence 6789999999999999988754 4333 5677888988888 77886654 3434 34455555555 766666
Q ss_pred cccccCCC
Q 034422 79 LSTLIGGF 86 (95)
Q Consensus 79 l~~l~~~~ 86 (95)
...+++-+
T Consensus 71 ~~H~aRqi 78 (159)
T KOG3217|consen 71 IDHLARQI 78 (159)
T ss_pred chhhcccc
Confidence 65555443
No 143
>PRK12742 oxidoreductase; Provisional
Probab=79.26 E-value=1.7 Score=30.73 Aligned_cols=28 Identities=18% Similarity=0.449 Sum_probs=22.1
Q ss_pred CCcceeeCEEEEee-ccccHHHHHHHHhh
Q 034422 1 MATLKKIPSVLMGC-GGVGRQLLQHIVSC 28 (95)
Q Consensus 1 ~~~mk~I~v~LiG~-G~VG~~Ll~~I~~~ 28 (95)
|..|+.=.++|.|. |+||+++++++.++
T Consensus 1 m~~~~~k~vlItGasggIG~~~a~~l~~~ 29 (237)
T PRK12742 1 MGAFTGKKVLVLGGSRGIGAAIVRRFVTD 29 (237)
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHC
Confidence 66665556789985 89999999998753
No 144
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=79.05 E-value=3.3 Score=28.60 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=28.2
Q ss_pred CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcce
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLV 51 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l 51 (95)
+++|+|.|+-|+.+++.+.+ .| .+++|..|.+...
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~-------~g--~~vvgfid~~~~~ 35 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAED-------SG--WEIVGFLDDNPAL 35 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHh-------CC--CEEEEEEcCCccc
Confidence 47899999999999998753 23 7999999986443
No 145
>PRK06545 prephenate dehydrogenase; Validated
Probab=78.98 E-value=2.9 Score=33.17 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=22.9
Q ss_pred CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEE
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVS 45 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVa 45 (95)
+|.+||.|.+|++++..+.+ .|.++.+++..
T Consensus 2 ~I~iIG~GliG~siA~~L~~-------~G~~v~i~~~~ 32 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKA-------AGPDVFIIGYD 32 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHh-------cCCCeEEEEeC
Confidence 47899999999999998854 24455555543
No 146
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.81 E-value=1.4 Score=33.27 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=17.8
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||.|.+|.+++..+.+
T Consensus 5 kI~VIG~G~mG~~ia~~la~ 24 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAV 24 (282)
T ss_pred EEEEEccCHHHHHHHHHHHH
Confidence 57999999999999998854
No 147
>PRK06126 hypothetical protein; Provisional
Probab=78.80 E-value=2.7 Score=34.50 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=25.6
Q ss_pred cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEE
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVG 43 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvg 43 (95)
.+...+|+|||-|.+|..++-.+.+ +|+++.|+=
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~-------~G~~v~viE 37 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGR-------RGVDSILVE 37 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHH-------CCCcEEEEe
Confidence 3456799999999999999877654 576655553
No 148
>PRK12862 malic enzyme; Reviewed
Probab=78.76 E-value=3.5 Score=36.78 Aligned_cols=54 Identities=26% Similarity=0.320 Sum_probs=41.0
Q ss_pred cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHH
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNL 65 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ 65 (95)
.++..+|++.|.|.-|-+.+++|.. .|+.-+=+-++||+|++.... +++|++..
T Consensus 190 ~~~~~~iv~~GaGaag~~~a~~l~~-------~G~~~~~i~~~D~~G~i~~~r--~~~l~~~~ 243 (763)
T PRK12862 190 DIEDVKLVASGAGAAALACLDLLVS-------LGVKRENIWVTDIKGVVYEGR--TELMDPWK 243 (763)
T ss_pred ChhhcEEEEEChhHHHHHHHHHHHH-------cCCCcccEEEEcCCCeeeCCC--CccccHHH
Confidence 3466899999999999999999976 566543336899999999654 44576554
No 149
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=78.73 E-value=1.5 Score=34.04 Aligned_cols=20 Identities=30% Similarity=0.590 Sum_probs=17.9
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.|+|.|+||++++..+..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~ 21 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN 21 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 58999999999999998765
No 150
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=78.71 E-value=1 Score=36.45 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=21.4
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++.-+|+|+|+|++|...++.+..
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~ 62 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLAS 62 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHH
Confidence 4466789999999999999998865
No 151
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=78.47 E-value=2.3 Score=34.21 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.3
Q ss_pred ceeeCEEEEee-ccccHHHHHHHHhh
Q 034422 4 LKKIPSVLMGC-GGVGRQLLQHIVSC 28 (95)
Q Consensus 4 mk~I~v~LiG~-G~VG~~Ll~~I~~~ 28 (95)
|+.++|+|+|- |.||++|++++.++
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~ 27 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAER 27 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcC
Confidence 57789999998 99999999999874
No 152
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=78.38 E-value=2.8 Score=34.58 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.1
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+...+|+|||.|.+|..++-.+.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~ 31 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQ 31 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH
Confidence 667899999999999999987764
No 153
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.34 E-value=2.7 Score=32.41 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.4
Q ss_pred eCEEEEeeccccHHHHHHHHhh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
.+|.++|.|++|+++++.+.+.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~ 26 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN 26 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC
Confidence 4689999999999999998764
No 154
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=78.27 E-value=1.7 Score=34.39 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=19.5
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.+.-+|++||.|.||.+++..+..
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~ 27 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVL 27 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh
Confidence 355679999999999999877553
No 155
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=78.14 E-value=4.7 Score=31.12 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=28.8
Q ss_pred CCcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEE-EcCCcce
Q 034422 1 MATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGV-SDSKSLV 51 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgV-aDSk~~l 51 (95)
|..|+.|-+ .|.||||....-.=.. ..+.+.| -||.-| +|.++..
T Consensus 1 ~~~~~~iai--~~KGGvGKTt~~~nLa--~~la~~g--~kVLliD~D~q~~~ 46 (295)
T PRK13234 1 MSKLRQIAF--YGKGGIGKSTTSQNTL--AALVEMG--QKILIVGCDPKADS 46 (295)
T ss_pred CCcceEEEE--ECCCCccHHHHHHHHH--HHHHHCC--CeEEEEeccccccc
Confidence 788987765 4999999987433222 1255566 367777 6665433
No 156
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=78.00 E-value=2.7 Score=32.51 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.4
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
++|.|+|.|+||.-++-.+.+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~ 23 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR 23 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh
Confidence 468999999999999988775
No 157
>PRK07045 putative monooxygenase; Reviewed
Probab=77.83 E-value=2.9 Score=32.49 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.6
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++++|+|||.|.+|-.++-.+.+
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~ 26 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGA 26 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHh
Confidence 567899999999999999977654
No 158
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=77.76 E-value=1.6 Score=32.55 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=18.2
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.++|.|++|..++..+.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~ 21 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ 21 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 58999999999999999875
No 159
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=77.64 E-value=1.7 Score=35.33 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=19.1
Q ss_pred eeCEEEEeeccccHHHHHHHHh
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
..+|.+||.|.||..++..+.+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~ 24 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFAS 24 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHh
Confidence 3458999999999999998876
No 160
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.59 E-value=1.8 Score=34.18 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=18.0
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
||.|||.|+||..++-.+..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~ 20 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA 20 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh
Confidence 68999999999999988775
No 161
>PRK06834 hypothetical protein; Provisional
Probab=77.58 E-value=2.6 Score=34.80 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.3
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|+..+|+|||.|.+|..++-.+.+
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~ 24 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELAL 24 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHH
Confidence 778999999999999999987755
No 162
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.47 E-value=1.5 Score=34.52 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.1
Q ss_pred eCEEEEeeccccHHHHHHHHhh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
.+|.|||.|+||.+++-.+..+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~ 25 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK 25 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc
Confidence 4889999999999999887654
No 163
>PRK10206 putative oxidoreductase; Provisional
Probab=77.43 E-value=1.6 Score=34.35 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=22.7
Q ss_pred eeCEEEEeeccccHH-HHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422 6 KIPSVLMGCGGVGRQ-LLQHIVSCRSLHANLGVHLRVVGVSDSK 48 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~-Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk 48 (95)
.|++.|||+|.+++. .+..+.. ... +++|+||+|++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~------~~~-~~~l~av~d~~ 37 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLN------RKD-SWHVAHIFRRH 37 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhc------CCC-CEEEEEEEcCC
Confidence 378999999986542 2222211 111 48999999974
No 164
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.09 E-value=2.2 Score=32.55 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=20.0
Q ss_pred CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|..|++ |.+||.|.+|.+++..+.+
T Consensus 1 ~~~~~~--I~vIGaG~mG~~iA~~l~~ 25 (311)
T PRK06130 1 MNPIQN--LAIIGAGTMGSGIAALFAR 25 (311)
T ss_pred CCCccE--EEEECCCHHHHHHHHHHHh
Confidence 444554 6999999999999998865
No 165
>PRK14851 hypothetical protein; Provisional
Probab=76.72 E-value=1.4 Score=38.64 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.0
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++.-+|+|+|+|+||...++.+..
T Consensus 40 kL~~~~VlIvG~GGlGs~va~~Lar 64 (679)
T PRK14851 40 RLAEAKVAIPGMGGVGGVHLITMVR 64 (679)
T ss_pred HHhcCeEEEECcCHHHHHHHHHHHH
Confidence 3566789999999999999987754
No 166
>PRK08703 short chain dehydrogenase; Provisional
Probab=76.57 E-value=2.3 Score=30.36 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=21.9
Q ss_pred CCcceeeCEEEEee-ccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
|.+|+.=.++|.|. |++|+++++++.+
T Consensus 1 ~~~l~~k~vlItG~sggiG~~la~~l~~ 28 (239)
T PRK08703 1 MATLSDKTILVTGASQGLGEQVAKAYAA 28 (239)
T ss_pred CCCCCCCEEEEECCCCcHHHHHHHHHHH
Confidence 67776556788885 8999999999875
No 167
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=76.28 E-value=1.7 Score=34.05 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=17.4
Q ss_pred eeCEEEEeeccccHHHHHHHH
Q 034422 6 KIPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~ 26 (95)
--.|-|+|+|+||+++++.+.
T Consensus 145 gktvGIiG~G~IG~~vA~~~~ 165 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQ 165 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHh
Confidence 345789999999999998764
No 168
>PLN02688 pyrroline-5-carboxylate reductase
Probab=76.20 E-value=1.9 Score=32.03 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=17.8
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||+|+.|.++++.+.+
T Consensus 2 kI~~IG~G~mG~a~a~~L~~ 21 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVA 21 (266)
T ss_pred eEEEECCcHHHHHHHHHHHH
Confidence 47999999999999998865
No 169
>PRK06487 glycerate dehydrogenase; Provisional
Probab=76.16 E-value=1.7 Score=34.17 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.6
Q ss_pred eCEEEEeeccccHHHHHHH
Q 034422 7 IPSVLMGCGGVGRQLLQHI 25 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I 25 (95)
-.|.|+|+|+||+++++.+
T Consensus 149 ktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CEEEEECCCHHHHHHHHHH
Confidence 4689999999999999765
No 170
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.97 E-value=2.3 Score=33.92 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=19.8
Q ss_pred CCcceee-CEEEEeeccccHHHHHHHH
Q 034422 1 MATLKKI-PSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 1 ~~~mk~I-~v~LiG~G~VG~~Ll~~I~ 26 (95)
|.++..| +|.+||.|.+|++++.++.
T Consensus 1 ~~~~~~i~~VaVIGaG~MG~giA~~~a 27 (321)
T PRK07066 1 MAVITDIKTFAAIGSGVIGSGWVARAL 27 (321)
T ss_pred CCCCCCCCEEEEECcCHHHHHHHHHHH
Confidence 4445333 4899999999999998775
No 171
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.89 E-value=2.4 Score=33.58 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=28.3
Q ss_pred eeeCEEEEee-ccccHHHHHHHHhhhHHHH-hcCCeEEEEEEE
Q 034422 5 KKIPSVLMGC-GGVGRQLLQHIVSCRSLHA-NLGVHLRVVGVS 45 (95)
Q Consensus 5 k~I~v~LiG~-G~VG~~Ll~~I~~~~~~~~-k~Gi~lrVvgVa 45 (95)
+.++|.|+|. |.||+.++..+..+ +... +++.+++++-+.
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~-~~~~~~~~~el~L~D~~ 42 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKG-DVFGPDQPVILHLLDIP 42 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhC-cccCCCCCcEEEEEEcC
Confidence 3578999999 99999999988764 2221 345566666553
No 172
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=75.78 E-value=2.2 Score=35.84 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=31.0
Q ss_pred eeeCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEE
Q 034422 5 KKIPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGV 44 (95)
Q Consensus 5 k~I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgV 44 (95)
+.++|.|+|. |+||.+++-.|..+.=+=..+++..+++-+
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvli 139 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGS 139 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEE
Confidence 4689999999 999999999888743333356777777755
No 173
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=75.75 E-value=4.1 Score=26.87 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=23.0
Q ss_pred CEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422 8 PSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS 47 (95)
Q Consensus 8 ~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS 47 (95)
+++++|. |.+|+.+++.+.+.. + +++++|+++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~------~--~~l~av~~~ 33 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHP------D--FEVVALAAS 33 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCC------C--ceEEEEEec
Confidence 5799995 889998888877642 3 456777554
No 174
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=75.73 E-value=1.9 Score=35.38 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=17.4
Q ss_pred eeCEEEEeeccccHHHHHHHH
Q 034422 6 KIPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~ 26 (95)
--.|-|||+|+||+++++.+.
T Consensus 116 gktvGIIG~G~IG~~vA~~l~ 136 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLE 136 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHH
Confidence 346799999999999987664
No 175
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=75.72 E-value=3.8 Score=30.93 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=18.2
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.++|.|++|.+++..+.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~ 22 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR 22 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 58999999999999999875
No 176
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=75.54 E-value=2.8 Score=33.16 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=24.6
Q ss_pred eCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422 7 IPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK 48 (95)
Q Consensus 7 I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk 48 (95)
++|+|+|. |.+|+.|++.+.+.. +++|+++++|+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~--------~~~l~~v~~~~ 35 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHP--------YFELAKVVASP 35 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC--------CceEEEEEECh
Confidence 47899996 779999999776532 14666776654
No 177
>PRK12827 short chain dehydrogenase; Provisional
Probab=75.27 E-value=2.5 Score=29.84 Aligned_cols=28 Identities=29% Similarity=0.558 Sum_probs=21.8
Q ss_pred CCcceeeCEEEEe-eccccHHHHHHHHhh
Q 034422 1 MATLKKIPSVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 1 ~~~mk~I~v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
|..|+.-+++|.| .|++|+++++.+.++
T Consensus 1 ~~~~~~~~ilItGasg~iG~~la~~l~~~ 29 (249)
T PRK12827 1 MASLDSRRVLITGGSGGLGRAIAVRLAAD 29 (249)
T ss_pred CCCcCCCEEEEECCCChHHHHHHHHHHHC
Confidence 5666555678888 689999999988763
No 178
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=75.13 E-value=2.2 Score=31.45 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=15.8
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++++|+|.||+++++.++.
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~ 44 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRG 44 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHH
T ss_pred EEEEeCCCcccHHHHHHHhh
Confidence 47899999999999998865
No 179
>PRK13243 glyoxylate reductase; Reviewed
Probab=75.13 E-value=2.1 Score=33.94 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=18.0
Q ss_pred eeCEEEEeeccccHHHHHHHH
Q 034422 6 KIPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~ 26 (95)
--+|.|+|+|++|+++++.+.
T Consensus 150 gktvgIiG~G~IG~~vA~~l~ 170 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAK 170 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHH
Confidence 347899999999999998774
No 180
>PRK07680 late competence protein ComER; Validated
Probab=74.99 E-value=2.1 Score=32.32 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=17.9
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||+|++|+++++.+.+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~ 21 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLE 21 (273)
T ss_pred EEEEECccHHHHHHHHHHHH
Confidence 48999999999999998865
No 181
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=74.90 E-value=2.1 Score=34.00 Aligned_cols=20 Identities=25% Similarity=0.566 Sum_probs=18.4
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|+|+|+|.+|+.+++.+.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~ 21 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSG 21 (453)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 58999999999999999876
No 182
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=74.66 E-value=2.4 Score=34.26 Aligned_cols=20 Identities=20% Similarity=0.599 Sum_probs=18.0
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|+|+|+|++|..+++.+..
T Consensus 1 kVLIvGaGGLGs~vA~~La~ 20 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLG 20 (307)
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 58999999999999998865
No 183
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.65 E-value=2.5 Score=33.91 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=19.2
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|+.-+|.++|+|..|.++++.+.+
T Consensus 1 ~~~~~i~iiGlG~~G~slA~~l~~ 24 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSIARFLAQ 24 (418)
T ss_pred CCCCeEEEEEECHHHHHHHHHHHH
Confidence 344468999999999998887654
No 184
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=74.54 E-value=2.2 Score=32.58 Aligned_cols=21 Identities=10% Similarity=0.306 Sum_probs=18.3
Q ss_pred CEEEEeeccccHHHHHHHHhh
Q 034422 8 PSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
+|.+||+|++|+++++.+.++
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~ 23 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLET 23 (277)
T ss_pred EEEEECccHHHHHHHHHHHHC
Confidence 479999999999999998754
No 185
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=74.43 E-value=5.2 Score=31.78 Aligned_cols=37 Identities=19% Similarity=0.432 Sum_probs=27.2
Q ss_pred eeCEEEEeeccccHHHH-HHHHhhhHHHHhcCCeEEEEEE
Q 034422 6 KIPSVLMGCGGVGRQLL-QHIVSCRSLHANLGVHLRVVGV 44 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll-~~I~~~~~~~~k~Gi~lrVvgV 44 (95)
.+++-+|=|||+|.+.+ +++.. ++..+.+|++||||-
T Consensus 2 vvkig~ik~GniGts~v~dlllD--ErAdRedi~vrVvgs 39 (277)
T COG1927 2 VVKIGFIKCGNIGTSPVVDLLLD--ERADREDIEVRVVGS 39 (277)
T ss_pred eeEEEEEEecccchHHHHHHHHH--hhcccCCceEEEecc
Confidence 46788999999998754 44433 344567999999983
No 186
>PRK06932 glycerate dehydrogenase; Provisional
Probab=74.40 E-value=2 Score=33.83 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=17.1
Q ss_pred eCEEEEeeccccHHHHHHHH
Q 034422 7 IPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~ 26 (95)
-.|.|+|+|.||+++++.+.
T Consensus 148 ktvgIiG~G~IG~~va~~l~ 167 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQ 167 (314)
T ss_pred CEEEEECCCHHHHHHHHHHh
Confidence 46899999999999997663
No 187
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=74.37 E-value=2.4 Score=32.58 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=18.4
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.++|.|.+|..++..+.+
T Consensus 4 kI~IiG~G~mG~~~A~~L~~ 23 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAA 23 (341)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 58999999999999999876
No 188
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=74.36 E-value=2.2 Score=32.81 Aligned_cols=20 Identities=20% Similarity=0.660 Sum_probs=18.0
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||+|++|.++++-+.+
T Consensus 4 ~IgfIG~G~MG~aia~~L~~ 23 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMIN 23 (272)
T ss_pred eEEEECccHHHHHHHHHHHH
Confidence 68999999999999998764
No 189
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=74.21 E-value=2.7 Score=29.49 Aligned_cols=25 Identities=20% Similarity=0.527 Sum_probs=19.9
Q ss_pred cceeeCEEEEee-ccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
+|+.-+++|.|. |++|+.+++++.+
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~ 27 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAA 27 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHH
Confidence 555456789984 9999999999875
No 190
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=74.13 E-value=5.2 Score=35.80 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=40.5
Q ss_pred cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHH
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNL 65 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ 65 (95)
++...+|++.|.|.-|-+.+++|.. .|+.-+=+-++||+|.+.... ++++++..
T Consensus 182 ~~~~~~iv~~GaGaag~~~a~~l~~-------~G~~~~~i~~~D~~G~i~~~r--~~~~~~~k 235 (752)
T PRK07232 182 KIEDVKIVVSGAGAAAIACLNLLVA-------LGAKKENIIVCDSKGVIYKGR--TEGMDEWK 235 (752)
T ss_pred ChhhcEEEEECccHHHHHHHHHHHH-------cCCCcccEEEEcCCCeecCCC--cccccHHH
Confidence 3456889999999999999999875 565432347899999999643 45576654
No 191
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=74.00 E-value=3.2 Score=33.51 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=19.5
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
++.-+|.+||+|++|+++++.+..
T Consensus 15 L~gktIgIIG~GsmG~AlA~~L~~ 38 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAHALNLRD 38 (330)
T ss_pred hCCCEEEEEeeHHHHHHHHHHHHH
Confidence 344568999999999999998843
No 192
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=73.94 E-value=2.8 Score=36.62 Aligned_cols=23 Identities=30% Similarity=0.614 Sum_probs=19.7
Q ss_pred eeeCEEEEeeccccHHHHHHHHh
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+.=+|.++|+||+|-+|++.|+.
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal 33 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLAL 33 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHH
Confidence 34578999999999999998864
No 193
>PRK06847 hypothetical protein; Provisional
Probab=73.84 E-value=4.9 Score=30.74 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=25.0
Q ss_pred CCcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422 1 MATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV 42 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv 42 (95)
|+.|+ +|+|||-|..|..++..+.+ +|+++.|+
T Consensus 1 m~~~~--~V~IVGaG~aGl~~A~~L~~-------~g~~v~v~ 33 (375)
T PRK06847 1 MAAVK--KVLIVGGGIGGLSAAIALRR-------AGIAVDLV 33 (375)
T ss_pred CCCcc--eEEEECCCHHHHHHHHHHHh-------CCCCEEEE
Confidence 66554 67999999999999988654 46665554
No 194
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=73.82 E-value=2.5 Score=31.74 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=18.9
Q ss_pred CEEEEeeccccHHHHHHHHhh
Q 034422 8 PSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
+|.++|.|++|..++..+.+.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~ 22 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA 22 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC
Confidence 589999999999999999873
No 195
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=73.68 E-value=2.5 Score=31.03 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=18.3
Q ss_pred CEEEEe-eccccHHHHHHHHhh
Q 034422 8 PSVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 8 ~v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
+|.+|| .|++|++++..+.+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~ 23 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA 23 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC
Confidence 589997 999999999998763
No 196
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=72.85 E-value=2.9 Score=31.63 Aligned_cols=20 Identities=15% Similarity=0.428 Sum_probs=18.3
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||+|.+|+.+++.+.+
T Consensus 4 ~IgviG~G~mG~~~a~~l~~ 23 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLK 23 (296)
T ss_pred eEEEEccCHHHHHHHHHHHH
Confidence 68999999999999999875
No 197
>PRK08163 salicylate hydroxylase; Provisional
Probab=72.77 E-value=4.5 Score=31.25 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=23.9
Q ss_pred eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV 42 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv 42 (95)
..+|+|||-|-.|.+++-.+.+ .|+++.|+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~-------~g~~v~v~ 33 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR-------QGIKVKLL 33 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh-------CCCcEEEE
Confidence 4789999999999999988754 56666555
No 198
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.65 E-value=2.5 Score=32.09 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=19.2
Q ss_pred eeeCEEEEeeccccHHHHHHHHh
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
..-+|.+||.|..|.+++..+.+
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~ 25 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCAL 25 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH
Confidence 33457999999999999998875
No 199
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=72.55 E-value=2.8 Score=32.97 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.0
Q ss_pred eeCEEEEeeccccHHHHHHHHh
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
..+|.|||.|+||.+++-.+..
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~ 27 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVN 27 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHh
Confidence 3589999999999999987764
No 200
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=72.52 E-value=1.9 Score=29.54 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=20.5
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.+.-++.|+|.|+.|++.+..+..
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~ 33 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAA 33 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHH
Confidence 445578999999999999998876
No 201
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=72.36 E-value=2.9 Score=28.17 Aligned_cols=19 Identities=16% Similarity=0.522 Sum_probs=17.5
Q ss_pred EEEEeeccccHHHHHHHHh
Q 034422 9 SVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 9 v~LiG~G~VG~~Ll~~I~~ 27 (95)
|.|+|.|++|.-++-.+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~ 19 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ 19 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH
T ss_pred CEEECcCHHHHHHHHHHHH
Confidence 6899999999999999966
No 202
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=72.24 E-value=3.1 Score=31.56 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=18.1
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||.|.+|++++..+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~ 21 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRS 21 (279)
T ss_pred eEEEEeecHHHHHHHHHHHH
Confidence 58999999999999999865
No 203
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=72.14 E-value=2.6 Score=33.46 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=17.7
Q ss_pred eCEEEEeeccccHHHHHHHH
Q 034422 7 IPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~ 26 (95)
.+|.|+|+|.+|+++++.+.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~ 166 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYA 166 (330)
T ss_pred CEEEEECCCHHHHHHHHHHH
Confidence 46899999999999998875
No 204
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=72.03 E-value=2.7 Score=32.02 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=18.1
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
-+|.++|.|.+|++++..+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~ 24 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR 24 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh
Confidence 457999999999999998754
No 205
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.00 E-value=2.7 Score=31.95 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=18.4
Q ss_pred eeCEEEEeeccccHHHHHHHHh
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.-+|+++|.|.+|++++..+.+
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~ 24 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAF 24 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHh
Confidence 3468999999999999987764
No 206
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=71.79 E-value=2.8 Score=32.70 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=18.6
Q ss_pred CEEEEeeccccHHHHHHHHhh
Q 034422 8 PSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
+|.|||.|.||..++..+..+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~ 22 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR 22 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc
Confidence 589999999999999988764
No 207
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=71.74 E-value=2.7 Score=33.30 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=16.8
Q ss_pred eCEEEEeeccccHHHHHHHH
Q 034422 7 IPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~ 26 (95)
-.|-|+|+|+||+++++.+.
T Consensus 146 ktvGIiG~G~IG~~va~~l~ 165 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAH 165 (323)
T ss_pred CEEEEEcccHHHHHHHHHHH
Confidence 45789999999999998653
No 208
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=71.55 E-value=4.2 Score=31.76 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=22.8
Q ss_pred eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV 42 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv 42 (95)
+.+|+|||-|-+|.+++-.+.+ +|+++.|+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~-------~G~~v~vi 31 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQG-------SGLEVLLL 31 (405)
T ss_pred CccEEEECccHHHHHHHHHHhc-------CCCEEEEE
Confidence 3689999999999999987653 46555444
No 209
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=71.51 E-value=2.9 Score=28.17 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=18.9
Q ss_pred eeCEEEEeeccccHHHHHHHHh
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.-++.++|+|++|+++++.+.+
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~ 40 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAE 40 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHH
Confidence 3568999999999999998865
No 210
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=71.36 E-value=4.8 Score=31.10 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=19.9
Q ss_pred eeeCEEEEeeccccHHHHHHHHh
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+.++|+|||-|.+|.+++-.+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~ 26 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQ 26 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhc
Confidence 45899999999999999987754
No 211
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=71.19 E-value=5 Score=31.21 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=23.7
Q ss_pred eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV 42 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv 42 (95)
..+|+|||-|.+|.+++-.+.+ +|+++.|+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~-------~G~~v~v~ 47 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD-------SGLRIALI 47 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc-------CCCEEEEE
Confidence 4789999999999999887754 56665554
No 212
>PRK08507 prephenate dehydrogenase; Validated
Probab=70.98 E-value=3.1 Score=31.43 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=17.9
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||.|.+|++++..+.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~ 21 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKE 21 (275)
T ss_pred EEEEEccCHHHHHHHHHHHh
Confidence 58999999999999998864
No 213
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=70.94 E-value=2.9 Score=33.32 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=27.2
Q ss_pred eeeCEEEEee-ccccHHHHHHHHhhhHHHH-hcCCeEEEEEE
Q 034422 5 KKIPSVLMGC-GGVGRQLLQHIVSCRSLHA-NLGVHLRVVGV 44 (95)
Q Consensus 5 k~I~v~LiG~-G~VG~~Ll~~I~~~~~~~~-k~Gi~lrVvgV 44 (95)
+.++|.|+|. |+||++++-.+..+ .... ...+++.++-+
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~-~~~~~~~~~el~L~Di 42 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASG-ELFGKDQPVVLHLLDI 42 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhC-CcccCCCccEEEEEec
Confidence 4689999999 99999999988764 3222 23445555533
No 214
>PRK06436 glycerate dehydrogenase; Provisional
Probab=70.90 E-value=2.9 Score=32.99 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=16.5
Q ss_pred eeCEEEEeeccccHHHHHHH
Q 034422 6 KIPSVLMGCGGVGRQLLQHI 25 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I 25 (95)
--.|.|+|+|++|+++++.+
T Consensus 122 gktvgIiG~G~IG~~vA~~l 141 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLA 141 (303)
T ss_pred CCEEEEECcCHHHHHHHHHH
Confidence 34679999999999999754
No 215
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=70.85 E-value=2.9 Score=33.02 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=18.1
Q ss_pred eeeCEEEEeeccccHHHHHHHH
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~ 26 (95)
+--+|.|+|+|++|+++++.+.
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~ 156 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQ 156 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHH
Confidence 3346799999999999998765
No 216
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=70.67 E-value=4.9 Score=34.10 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=20.9
Q ss_pred eCEEEEee-ccccHHHHHHHHhhhH
Q 034422 7 IPSVLMGC-GGVGRQLLQHIVSCRS 30 (95)
Q Consensus 7 I~v~LiG~-G~VG~~Ll~~I~~~~~ 30 (95)
.+|+|+|. |.||++.++.|.+.++
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~pd 82 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAENPD 82 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhCcc
Confidence 47899999 9999999999997544
No 217
>PRK12939 short chain dehydrogenase; Provisional
Probab=70.64 E-value=3.7 Score=29.07 Aligned_cols=27 Identities=15% Similarity=0.367 Sum_probs=20.8
Q ss_pred CCcceeeCEEEEee-ccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
|..|+.-.++|.|. |++|+++++++.+
T Consensus 2 ~~~~~~~~vlItGa~g~iG~~la~~l~~ 29 (250)
T PRK12939 2 ASNLAGKRALVTGAARGLGAAFAEALAE 29 (250)
T ss_pred CCCCCCCEEEEeCCCChHHHHHHHHHHH
Confidence 45565555788884 9999999999875
No 218
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=70.63 E-value=3 Score=33.16 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.2
Q ss_pred eCEEEEee-ccccHHHHHHHHh
Q 034422 7 IPSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
++|.|||. |+||.+++-.+..
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~ 22 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKL 22 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHh
Confidence 37899999 9999999987754
No 219
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=70.52 E-value=2.9 Score=34.19 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=17.1
Q ss_pred eCEEEEeeccccHHHHHHHH
Q 034422 7 IPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~ 26 (95)
-.|.|||+|+||+.+++.+.
T Consensus 117 ktvGIIG~G~IG~~va~~l~ 136 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLR 136 (381)
T ss_pred CEEEEECCCHHHHHHHHHHH
Confidence 45799999999999998664
No 220
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=70.39 E-value=5 Score=31.29 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.2
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
++|+|+|-|.+|.+++-.+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~ 22 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ 22 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc
Confidence 578999999999999987654
No 221
>PRK13529 malate dehydrogenase; Provisional
Probab=70.36 E-value=8.7 Score=33.50 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=35.6
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeE----EEEEEEcCCcceecc
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHL----RVVGVSDSKSLVVAS 54 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~l----rVvgVaDSk~~l~~~ 54 (95)
++..++++.|.|.-|-+.+++|... +.++|+.. +=+-++||+|++...
T Consensus 293 l~d~riv~~GAGsAgiGia~ll~~~---~~~~Gl~~eeA~~~i~~vD~~GLl~~~ 344 (563)
T PRK13529 293 LSDQRIVFLGAGSAGCGIADQIVAA---MVREGLSEEEARKRFFMVDRQGLLTDD 344 (563)
T ss_pred hhhcEEEEECCCHHHHHHHHHHHHH---HHHcCCChhHhcCeEEEEcCCCeEeCC
Confidence 4567899999999999999999762 23346532 233567999999854
No 222
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=70.29 E-value=4.1 Score=32.65 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=23.7
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV 42 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv 42 (95)
++|+|||-|.+|.+++-.+.++. ..+|+++.|+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~---~~~G~~v~vi 33 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNP---LTKDLKVLLL 33 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCc---ccCCCeEEEE
Confidence 47999999999999998877531 1146555444
No 223
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=70.21 E-value=2.5 Score=38.74 Aligned_cols=25 Identities=28% Similarity=0.735 Sum_probs=21.3
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++..+|+|+|+|++|.++++.++.
T Consensus 416 kL~~~kVlvvGaGGlG~e~lknLal 440 (1008)
T TIGR01408 416 KLQNLNIFLVGCGAIGCEMLKNFAL 440 (1008)
T ss_pred HHhhCcEEEECCChHHHHHHHHHHH
Confidence 3456789999999999999998865
No 224
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=70.20 E-value=5 Score=34.44 Aligned_cols=33 Identities=21% Similarity=0.531 Sum_probs=25.6
Q ss_pred eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEE
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVG 43 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvg 43 (95)
+..+|+|||.|.+|-.++-.++++ .|++++|+=
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~------~Gi~v~IiE 63 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF------PDITTRIVE 63 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC------CCCcEEEEE
Confidence 568999999999999999877652 266666553
No 225
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=70.16 E-value=3.7 Score=32.22 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=36.5
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeE----EEEEEEcCCcceecccCCCCCCCHH
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHL----RVVGVSDSKSLVVASDVFTKEFNDN 64 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~l----rVvgVaDSk~~l~~~d~~~~GLd~~ 64 (95)
++..+++++|.|.-|-+.+++|.+. +.++|+.. +=+-+.||+|++.+. .+.|++.
T Consensus 23 l~d~riv~~GAGsAg~gia~ll~~~---~~~~G~~~~eA~~~i~lvD~~Gll~~~---r~~l~~~ 81 (255)
T PF03949_consen 23 LSDQRIVFFGAGSAGIGIARLLVAA---MVREGLSEEEARKRIWLVDSKGLLTDD---REDLNPH 81 (255)
T ss_dssp GGG-EEEEEB-SHHHHHHHHHHHHH---HHCTTS-HHHHHTTEEEEETTEEEBTT---TSSHSHH
T ss_pred HHHcEEEEeCCChhHHHHHHHHHHH---HHHhcCCHHHHhccEEEEeccceEecc---CccCChh
Confidence 4567899999999999999999873 22224321 224578999999964 4556544
No 226
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=70.12 E-value=4.4 Score=37.47 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=27.3
Q ss_pred CEEEEeeccccHHHHHHHHhhhHHH----HhcCCeEEEEEEEcC
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCRSLH----ANLGVHLRVVGVSDS 47 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~~~~----~k~Gi~lrVvgVaDS 47 (95)
+|+|+|+|.||+..++.+.+..... ..+.=+..+|.|+|.
T Consensus 571 rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~ 614 (1042)
T PLN02819 571 NVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL 614 (1042)
T ss_pred cEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC
Confidence 6799999999999999998753311 011122446788884
No 227
>PRK12746 short chain dehydrogenase; Provisional
Probab=70.06 E-value=3.9 Score=29.29 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=21.2
Q ss_pred CCcceeeCEEEEe-eccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG-~G~VG~~Ll~~I~~ 27 (95)
|..|+.-.++|.| .|++|+++++++.+
T Consensus 1 ~~~~~~~~ilItGasg~iG~~la~~l~~ 28 (254)
T PRK12746 1 MKNLDGKVALVTGASRGIGRAIAMRLAN 28 (254)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHH
Confidence 5566545678888 68999999999875
No 228
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=69.93 E-value=4.2 Score=29.63 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=16.3
Q ss_pred eCEEEEeeccccHHHHHHHHhh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
++|.++|.|.||..++-.++++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~ 22 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK 22 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT
T ss_pred CEEEEECCCcchHHHHHHHHhC
Confidence 3689999999999998877763
No 229
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=69.92 E-value=1.9 Score=39.52 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=22.7
Q ss_pred CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|.+|+.-+|+|+|+|++|.++++-|..
T Consensus 19 q~kL~~s~VLIiG~gGLG~EiaKnL~l 45 (1008)
T TIGR01408 19 MQKMAKSNVLISGMGGLGLEIAKNLVL 45 (1008)
T ss_pred HHHHhhCcEEEECCCHHHHHHHHHHHH
Confidence 346778899999999999999987753
No 230
>PRK06753 hypothetical protein; Provisional
Probab=69.87 E-value=5.2 Score=30.65 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=17.8
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|+|||-|.+|.+++..+.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 78999999999999888765
No 231
>PLN02928 oxidoreductase family protein
Probab=69.69 E-value=3 Score=33.32 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=17.1
Q ss_pred eCEEEEeeccccHHHHHHHH
Q 034422 7 IPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~ 26 (95)
-.|.|+|+|.+|+++++.+.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~ 179 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLR 179 (347)
T ss_pred CEEEEECCCHHHHHHHHHHh
Confidence 36799999999999998764
No 232
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=69.59 E-value=4 Score=28.87 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=20.9
Q ss_pred CCcceeeCEEEEe-eccccHHHHHHHHhh
Q 034422 1 MATLKKIPSVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 1 ~~~mk~I~v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
|..|+.-.++|.| .|++|+++++.+.++
T Consensus 1 ~~~~~~~~ilItGasg~iG~~l~~~l~~~ 29 (251)
T PRK12826 1 TRDLEGRVALVTGAARGIGRAIAVRLAAD 29 (251)
T ss_pred CCCCCCCEEEEcCCCCcHHHHHHHHHHHC
Confidence 3445444578888 799999999998763
No 233
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=69.50 E-value=3.2 Score=33.71 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=19.5
Q ss_pred eeCEEEEee-ccccHHHHHHHHhhhH
Q 034422 6 KIPSVLMGC-GGVGRQLLQHIVSCRS 30 (95)
Q Consensus 6 ~I~v~LiG~-G~VG~~Ll~~I~~~~~ 30 (95)
+++|+| |- |.||+.+++.+.++.-
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~f 27 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDL 27 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCC
Confidence 346899 98 9999999998887543
No 234
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=69.28 E-value=4.4 Score=30.68 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=17.8
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||.|.+|+++++.+.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~ 20 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAK 20 (291)
T ss_pred CEEEEEecHHHHHHHHHHHH
Confidence 47899999999999998875
No 235
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=69.10 E-value=11 Score=32.81 Aligned_cols=55 Identities=22% Similarity=0.303 Sum_probs=38.0
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeE-----EEEEEEcCCcceecccCCCCCCCHH
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHL-----RVVGVSDSKSLVVASDVFTKEFNDN 64 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~l-----rVvgVaDSk~~l~~~d~~~~GLd~~ 64 (95)
.+..+|++.|.|.-|-+.+++|... +.+.|+.- |+ -+.||+|++.... ++.|++.
T Consensus 295 l~d~riv~~GAGsAgiGia~ll~~~---m~~~Gls~eeA~~~i-~~vD~~GLl~~~r--~~~l~~~ 354 (559)
T PTZ00317 295 PEEQRIVFFGAGSAAIGVANNIADL---AAEYGVTREEALKSF-YLVDSKGLVTTTR--GDKLAKH 354 (559)
T ss_pred hhhcEEEEECCCHHHHHHHHHHHHH---HHHcCCChhHhcCeE-EEEcCCCeEeCCC--CccccHH
Confidence 4567899999999999999999752 22345421 44 5669999999643 3335544
No 236
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=68.96 E-value=4.8 Score=28.46 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=20.6
Q ss_pred ceeeCEEEEeeccccHH-HHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQ-LLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~-Ll~~I~~ 27 (95)
|+.++|+++|-.+||.. |+..+..
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~ 25 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTT 25 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHh
Confidence 78899999999999976 7777765
No 237
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=68.81 E-value=3.8 Score=34.21 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=18.4
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++++|+|.+|+.+++.+.+
T Consensus 419 hiiI~G~G~~G~~la~~L~~ 438 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLA 438 (558)
T ss_pred CEEEECCChHHHHHHHHHHH
Confidence 57999999999999999976
No 238
>PRK07190 hypothetical protein; Provisional
Probab=68.80 E-value=5.5 Score=32.92 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=23.5
Q ss_pred eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV 42 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv 42 (95)
...+|+|||-|.+|..++-.+ .++|+++.|+
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~L-------ar~Gi~V~ll 34 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLG-------QLCGLNTVIV 34 (487)
T ss_pred ccceEEEECCCHHHHHHHHHH-------HHcCCCEEEE
Confidence 557999999999999988544 4457665554
No 239
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=68.79 E-value=3.3 Score=32.86 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=19.7
Q ss_pred eeeCEEEEee-ccccHHHHHHHHh
Q 034422 5 KKIPSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 5 k~I~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
|..+|.|+|. |+||.+++-.+..
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~ 24 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIAS 24 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHh
Confidence 3568999999 9999999887765
No 240
>PTZ00117 malate dehydrogenase; Provisional
Probab=68.70 E-value=3.4 Score=32.47 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.0
Q ss_pred eeeCEEEEeeccccHHHHHHHHhh
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
+..+|++||.|.||.+++..+..+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~ 27 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQK 27 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHC
Confidence 566899999999999988776653
No 241
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=68.61 E-value=2.7 Score=32.74 Aligned_cols=39 Identities=18% Similarity=0.404 Sum_probs=32.3
Q ss_pred cceeeCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422 3 TLKKIPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK 48 (95)
Q Consensus 3 ~mk~I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk 48 (95)
+|+....|++|. |-+|+.|++++.++-.+ -+|++|...+
T Consensus 15 ~mq~~s~fvlGAtG~~G~~llk~~~E~~~F-------SKV~~i~RR~ 54 (238)
T KOG4039|consen 15 RMQNMSGFVLGATGLCGGGLLKHAQEAPQF-------SKVYAILRRE 54 (238)
T ss_pred hhhccceEEEeccccccHHHHHHHHhcccc-------eeEEEEEecc
Confidence 688999999995 88999999999986555 5788888754
No 242
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=68.43 E-value=3.4 Score=33.56 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=21.6
Q ss_pred eeeCEEEEee-ccccHHHHHHHHhhhH
Q 034422 5 KKIPSVLMGC-GGVGRQLLQHIVSCRS 30 (95)
Q Consensus 5 k~I~v~LiG~-G~VG~~Ll~~I~~~~~ 30 (95)
+.++|+|+|. |.||+.+++++.+.+.
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~ 30 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETK 30 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCC
Confidence 3478999998 9999999999986443
No 243
>PRK14852 hypothetical protein; Provisional
Probab=68.39 E-value=3 Score=38.51 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.1
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++.-+|+|+|+||||...++.++.
T Consensus 329 kL~~srVlVvGlGGlGs~ia~~LAr 353 (989)
T PRK14852 329 RLLRSRVAIAGLGGVGGIHLMTLAR 353 (989)
T ss_pred HHhcCcEEEECCcHHHHHHHHHHHH
Confidence 4567789999999999999987764
No 244
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=68.18 E-value=3.3 Score=34.34 Aligned_cols=56 Identities=18% Similarity=0.353 Sum_probs=42.0
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhH---HHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHH
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRS---LHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNL 65 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~---~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ 65 (95)
.+...|+|+|.|+||+-.++.+-+|-- ++- |..=|-++|...+.+..| ..||+--.
T Consensus 80 IR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLf----DYDkVElANMNRLFf~P~--QaGlsKv~ 138 (422)
T KOG2336|consen 80 IREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLF----DYDKVELANMNRLFFQPD--QAGLSKVD 138 (422)
T ss_pred HhhheeEEEecCchhHHHHHHHHhcCcceEEEe----ecchhhhhcccccccCcc--cccchHHH
Confidence 355678999999999999999988632 223 333466789999999777 88887543
No 245
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=68.17 E-value=5.8 Score=31.18 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=36.8
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCe----EEEEEEEcCCcceecccCCCCCCCHH
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVH----LRVVGVSDSKSLVVASDVFTKEFNDN 64 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~----lrVvgVaDSk~~l~~~d~~~~GLd~~ 64 (95)
.+..+|+++|.|.-|-+.+++|..--. +.|+. -+=+-++||+|++.+.. ..+++.
T Consensus 23 l~d~riv~~GAGsAg~gia~ll~~~~~---~~Gls~e~A~~~i~~vD~~Gll~~~r---~~l~~~ 81 (254)
T cd00762 23 ISEHKVLFNGAGAAALGIANLIVXLXV---KEGISKEEACKRIWXVDRKGLLVKNR---KETCPN 81 (254)
T ss_pred hhhcEEEEECcCHHHHHHHHHHHHHHH---hcCCCHHHHhccEEEECCCCeEeCCC---CccCHH
Confidence 456789999999999999999977211 11111 11235789999999653 336553
No 246
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.11 E-value=4.7 Score=29.68 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=22.2
Q ss_pred CCcceeeCEEEEe---eccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMG---CGGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG---~G~VG~~Ll~~I~~ 27 (95)
|++|+.=.++|.| -+++|+++++.+.+
T Consensus 1 ~~~~~~k~~lITGa~~~~GIG~a~a~~l~~ 30 (261)
T PRK08690 1 MGFLQGKKILITGMISERSIAYGIAKACRE 30 (261)
T ss_pred CCccCCcEEEEECCCCCCcHHHHHHHHHHH
Confidence 7788655679999 46999999999876
No 247
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=68.08 E-value=3.6 Score=31.64 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=18.7
Q ss_pred CEEEEeeccccHHHHHHHHhh
Q 034422 8 PSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
+|.|+|.|++|.+++..+.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~ 22 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK 22 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC
Confidence 489999999999999998763
No 248
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=67.96 E-value=4.6 Score=33.22 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=24.0
Q ss_pred CCcceeeCEEEEeeccccHHHHHHHHhh
Q 034422 1 MATLKKIPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
|..+...+|+|||-|.+|.+.+.++.++
T Consensus 1 ~~~~~~~DVvIIGGGi~G~~~A~~la~r 28 (502)
T PRK13369 1 MAEPETYDLFVIGGGINGAGIARDAAGR 28 (502)
T ss_pred CCCCcccCEEEECCCHHHHHHHHHHHhC
Confidence 4556679999999999999999998874
No 249
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=67.93 E-value=3.1 Score=29.38 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=19.5
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
..+..+|+++|.|+||++-++.+..
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~ 41 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKG 41 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhH
Confidence 3467899999999999998887765
No 250
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=67.92 E-value=4.6 Score=31.18 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=18.4
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.++|.|..|.+++..+.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~ 25 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAAS 25 (328)
T ss_pred eEEEECcCHHHHHHHHHHHH
Confidence 58999999999999999876
No 251
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=67.83 E-value=6.3 Score=31.03 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=18.7
Q ss_pred CEEEEeeccccHHHHHHHHhh
Q 034422 8 PSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
+|.|+|.|.||.-++-.+.+.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~ 22 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKA 22 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhC
Confidence 689999999999999888773
No 252
>PRK12861 malic enzyme; Reviewed
Probab=67.61 E-value=6.6 Score=35.27 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=38.5
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeE-EEEEEEcCCcceecccCCCCCCCHH
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHL-RVVGVSDSKSLVVASDVFTKEFNDN 64 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~l-rVvgVaDSk~~l~~~d~~~~GLd~~ 64 (95)
++..+|++.|.|.-|.+.++++.+ .|+.- ++ -++||+|++.... ++.+++.
T Consensus 187 l~d~~iv~~GAGaAg~~ia~~l~~-------~G~~~~~i-~~~D~~Gli~~~r--~~~l~~~ 238 (764)
T PRK12861 187 IKEVKVVTSGAGAAALACLDLLVD-------LGLPVENI-WVTDIEGVVYRGR--TTLMDPD 238 (764)
T ss_pred hhHcEEEEECHhHHHHHHHHHHHH-------cCCChhhE-EEEcCCCeeeCCC--cccCCHH
Confidence 456889999999999999998865 45533 44 6899999999654 4446654
No 253
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=67.61 E-value=3.7 Score=31.96 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=18.9
Q ss_pred eeCEEEEeeccccHHHHHHHHh
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.-++.|+|+|.+|+++++.+..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~ 172 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSA 172 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHH
Confidence 3468999999999999998865
No 254
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=67.31 E-value=6.2 Score=30.93 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=29.3
Q ss_pred eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcce
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLV 51 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l 51 (95)
..+|.|+|.|.+|+.+++-+.+ .|...+++++-.+...+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~-------~g~~v~i~g~d~~~~~~ 41 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKE-------AGLVVRIIGRDRSAATL 41 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHH-------cCCeEEEEeecCcHHHH
Confidence 3567999999999999987654 56667778877775433
No 255
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=67.13 E-value=6.6 Score=26.40 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=21.4
Q ss_pred cceeeCEEEEeeccccH-HHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGR-QLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~-~Ll~~I~~ 27 (95)
++..++|+++|-.+||. +|++.+..
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~ 27 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVT 27 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHc
Confidence 57889999999999997 77887765
No 256
>PRK06996 hypothetical protein; Provisional
Probab=67.10 E-value=4.4 Score=31.87 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.8
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.+|+|+|-|.+|.+++-.+.+
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~ 32 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLAR 32 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhc
Confidence 689999999999999988764
No 257
>PRK08605 D-lactate dehydrogenase; Validated
Probab=67.09 E-value=3.6 Score=32.54 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=18.1
Q ss_pred eeCEEEEeeccccHHHHHHHH
Q 034422 6 KIPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~ 26 (95)
-.+|.|+|+|.+|+++++.+.
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~ 166 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFA 166 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHH
Confidence 346899999999999999883
No 258
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=67.06 E-value=6.6 Score=31.13 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=18.4
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
-+++++|+|.+|+.+++.+.+
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~ 252 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEK 252 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHh
Confidence 357999999999999998876
No 259
>PRK06223 malate dehydrogenase; Reviewed
Probab=66.78 E-value=4.3 Score=31.03 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=17.8
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.+|+++|.|.||.+++..+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~ 23 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL 23 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh
Confidence 378999999999998887654
No 260
>PLN02712 arogenate dehydrogenase
Probab=66.54 E-value=3.8 Score=35.77 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=18.6
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.+|.|||+|.+|+.+++.+.+
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~ 73 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLIS 73 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHH
Confidence 468999999999999998865
No 261
>PTZ00325 malate dehydrogenase; Provisional
Probab=66.30 E-value=4.2 Score=32.44 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=17.8
Q ss_pred CEEEEee-ccccHHHHHHHHh
Q 034422 8 PSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
+|.|+|. |+||+.++..+..
T Consensus 10 KI~IiGaaG~VGs~~a~~l~~ 30 (321)
T PTZ00325 10 KVAVLGAAGGIGQPLSLLLKQ 30 (321)
T ss_pred EEEEECCCCHHHHHHHHHHhc
Confidence 7799999 9999999988764
No 262
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=66.19 E-value=4.4 Score=32.17 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=28.6
Q ss_pred eCEEEEee-ccccHHHHHHHHhhhHHHH-hcCCeEEEEEEEc
Q 034422 7 IPSVLMGC-GGVGRQLLQHIVSCRSLHA-NLGVHLRVVGVSD 46 (95)
Q Consensus 7 I~v~LiG~-G~VG~~Ll~~I~~~~~~~~-k~Gi~lrVvgVaD 46 (95)
.+|.|+|. |.||+.++..+..+ .... .+.+++.++-+..
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~-~~~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASG-ELFGDDQPVILHLLDIPP 41 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhC-CccCCCCceEEEEEecCC
Confidence 37899999 99999999988753 4333 3566777776643
No 263
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=66.11 E-value=4.4 Score=32.70 Aligned_cols=33 Identities=24% Similarity=0.479 Sum_probs=23.8
Q ss_pred CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEE
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVS 45 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVa 45 (95)
+|+++|-|+||++++-.+ .++.. +-++.++-|.
T Consensus 2 KVaviGaG~VG~s~a~~l-~~~~~----~~el~LiDi~ 34 (313)
T COG0039 2 KVAVIGAGNVGSSLAFLL-LLQGL----GSELVLIDIN 34 (313)
T ss_pred eEEEECCChHHHHHHHHH-hcccc----cceEEEEEcc
Confidence 789999999999999988 33332 2256665555
No 264
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=66.04 E-value=5.5 Score=31.74 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=17.8
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
++.++|+|+.|.++++.+.+
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~ 20 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHK 20 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHH
Confidence 47899999999999999775
No 265
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=65.97 E-value=5.6 Score=33.32 Aligned_cols=19 Identities=32% Similarity=0.660 Sum_probs=17.5
Q ss_pred EEEEeeccccHHHHHHHHh
Q 034422 9 SVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 9 v~LiG~G~VG~~Ll~~I~~ 27 (95)
|+++|+|+||+-++..+.+
T Consensus 77 VVVVG~GgVGSwv~nmL~R 95 (430)
T KOG2018|consen 77 VVVVGAGGVGSWVANMLLR 95 (430)
T ss_pred EEEEecCchhHHHHHHHHH
Confidence 7999999999999998877
No 266
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=65.85 E-value=4.9 Score=32.26 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=18.3
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||.|.+|..++..+.+
T Consensus 2 kI~vIGlG~~G~~lA~~La~ 21 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLAD 21 (411)
T ss_pred EEEEECCCchhHHHHHHHHh
Confidence 58999999999999999875
No 267
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=65.85 E-value=4.2 Score=31.96 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=16.9
Q ss_pred EEEEeeccccHHHHHHHHhhhH
Q 034422 9 SVLMGCGGVGRQLLQHIVSCRS 30 (95)
Q Consensus 9 v~LiG~G~VG~~Ll~~I~~~~~ 30 (95)
|.++|.|.||+..++.+.++.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~ 22 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP 22 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC
T ss_pred CEEEcCcHHHHHHHHHHhcCCC
Confidence 6899999999999998887543
No 268
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=65.78 E-value=4.9 Score=31.93 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.4
Q ss_pred CEEEEee-ccccHHHHHHHHhh
Q 034422 8 PSVLMGC-GGVGRQLLQHIVSC 28 (95)
Q Consensus 8 ~v~LiG~-G~VG~~Ll~~I~~~ 28 (95)
+|.|+|. |+||.+++-.+..+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~ 22 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ 22 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC
Confidence 6899999 99999999887653
No 269
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=65.56 E-value=7.8 Score=27.56 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=18.4
Q ss_pred eeCEEEEeeccccHHHHHHHHh
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.=+|+|+|-|.||...++.+.+
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~ 34 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKD 34 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHh
Confidence 3467999999999998887765
No 270
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=65.54 E-value=5.1 Score=34.40 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=19.0
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
-+|+|+|+|.+|+.+++.+.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~ 421 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLS 421 (621)
T ss_pred CcEEEEecChHHHHHHHHHHh
Confidence 468999999999999998876
No 271
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=65.50 E-value=5.4 Score=30.69 Aligned_cols=20 Identities=15% Similarity=0.489 Sum_probs=18.0
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||.|.+|.++++.+.+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~ 22 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLK 22 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHH
Confidence 57999999999999998865
No 272
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=65.50 E-value=3.8 Score=36.37 Aligned_cols=24 Identities=17% Similarity=0.529 Sum_probs=20.9
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.+.-+|.|+|+|++|..+++.+.+
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~ 359 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIG 359 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHH
Confidence 456789999999999999998765
No 273
>PRK07774 short chain dehydrogenase; Provisional
Probab=65.46 E-value=5.3 Score=28.43 Aligned_cols=28 Identities=18% Similarity=0.475 Sum_probs=21.4
Q ss_pred CCcceeeCEEEEee-ccccHHHHHHHHhh
Q 034422 1 MATLKKIPSVLMGC-GGVGRQLLQHIVSC 28 (95)
Q Consensus 1 ~~~mk~I~v~LiG~-G~VG~~Ll~~I~~~ 28 (95)
|..|+.-.++|.|- |++|+++++++.++
T Consensus 1 ~~~~~~k~vlItGasg~iG~~la~~l~~~ 29 (250)
T PRK07774 1 MGRFDDKVAIVTGAAGGIGQAYAEALARE 29 (250)
T ss_pred CcccCCCEEEEECCCchHHHHHHHHHHHC
Confidence 44454445789986 99999999999763
No 274
>PRK07574 formate dehydrogenase; Provisional
Probab=65.41 E-value=4.2 Score=33.34 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=17.8
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
-+|.|+|+|++|+++++.+..
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~ 213 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKP 213 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHh
Confidence 468999999999999987653
No 275
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=65.15 E-value=16 Score=24.72 Aligned_cols=40 Identities=13% Similarity=0.264 Sum_probs=25.4
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS 47 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS 47 (95)
|++| ++++|.|. +++++-.- -++.++++|+++.+.+..-+
T Consensus 1 MkkI-LlvCg~G~-STSlla~k--~k~~~~e~gi~~~i~a~~~~ 40 (104)
T PRK09590 1 MKKA-LIICAAGM-SSSMMAKK--TTEYLKEQGKDIEVDAITAT 40 (104)
T ss_pred CcEE-EEECCCch-HHHHHHHH--HHHHHHHCCCceEEEEecHH
Confidence 5544 46777776 55532221 26677889999998776654
No 276
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=65.08 E-value=5.4 Score=28.51 Aligned_cols=28 Identities=21% Similarity=0.538 Sum_probs=21.5
Q ss_pred CCcceeeCEEEEee-ccccHHHHHHHHhh
Q 034422 1 MATLKKIPSVLMGC-GGVGRQLLQHIVSC 28 (95)
Q Consensus 1 ~~~mk~I~v~LiG~-G~VG~~Ll~~I~~~ 28 (95)
|..|+.-.++|.|. |++|+++++.+.++
T Consensus 2 ~~~~~~~~vlItGasg~iG~~la~~l~~~ 30 (262)
T PRK13394 2 MSNLNGKTAVVTGAASGIGKEIALELARA 30 (262)
T ss_pred cccCCCCEEEEECCCChHHHHHHHHHHHC
Confidence 44555556788887 99999999998753
No 277
>PTZ00367 squalene epoxidase; Provisional
Probab=64.77 E-value=8.2 Score=32.99 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=21.6
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++..+|+|||-|-+|.+++..+.+
T Consensus 30 ~~~~~dViIVGaGiaGlalA~aLar 54 (567)
T PTZ00367 30 TNYDYDVIIVGGSIAGPVLAKALSK 54 (567)
T ss_pred cccCccEEEECCCHHHHHHHHHHHh
Confidence 4567899999999999999988765
No 278
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=64.71 E-value=5.2 Score=32.88 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=20.2
Q ss_pred CEEEEee-ccccHHHHHHHHhhhHH
Q 034422 8 PSVLMGC-GGVGRQLLQHIVSCRSL 31 (95)
Q Consensus 8 ~v~LiG~-G~VG~~Ll~~I~~~~~~ 31 (95)
+|+++|. |.||+.+++.+...+.+
T Consensus 2 ~VavvGATG~VG~~ll~~L~~e~~f 26 (366)
T TIGR01745 2 NVGLVGWRGMVGSVLMQRMQEERDF 26 (366)
T ss_pred eEEEEcCcCHHHHHHHHHHHhCCCC
Confidence 6899998 99999999988865554
No 279
>PRK06500 short chain dehydrogenase; Provisional
Probab=64.61 E-value=5.9 Score=28.10 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=21.6
Q ss_pred CCcceeeCEEEEee-ccccHHHHHHHHhh
Q 034422 1 MATLKKIPSVLMGC-GGVGRQLLQHIVSC 28 (95)
Q Consensus 1 ~~~mk~I~v~LiG~-G~VG~~Ll~~I~~~ 28 (95)
|.+|+.-.++|.|. |++|+++++.+.++
T Consensus 1 m~~~~~k~vlItGasg~iG~~la~~l~~~ 29 (249)
T PRK06500 1 MSRLQGKTALITGGTSGIGLETARQFLAE 29 (249)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHC
Confidence 55665456788886 99999999998753
No 280
>PRK07538 hypothetical protein; Provisional
Probab=64.54 E-value=7.7 Score=30.58 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=22.4
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV 42 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv 42 (95)
++|+|||-|-.|.+++..+.+ +|+++.|+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~-------~G~~v~v~ 29 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQ-------RGIEVVVF 29 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHh-------CCCcEEEE
Confidence 378999999999999987654 36665554
No 281
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=64.42 E-value=6.2 Score=28.98 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=16.7
Q ss_pred eeCEEEEeeccccHHHHHHHHh
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.++|+|||-|-.|..++..+.+
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~ 22 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALAR 22 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHh
Confidence 3689999999999999877655
No 282
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=64.19 E-value=5 Score=28.93 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=22.1
Q ss_pred CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEE
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGV 44 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgV 44 (95)
+|.++|.|..|++++.++.. .|.+++++-+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~-------~G~~V~l~d~ 30 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR-------AGYEVTLYDR 30 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH-------TTSEEEEE-S
T ss_pred CEEEEcCCHHHHHHHHHHHh-------CCCcEEEEEC
Confidence 58999999999999987665 4767766654
No 283
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=64.19 E-value=8.9 Score=28.15 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=22.5
Q ss_pred CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV 42 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv 42 (95)
+|+|||-|-+|...+..+.+ +|.++.|+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-------~G~~V~l~ 28 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-------RGHSVTLL 28 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-------TTSEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHH-------CCCeEEEE
Confidence 58999999999999988877 56555444
No 284
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=63.87 E-value=5 Score=31.28 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=19.6
Q ss_pred eeeCEEEEeeccccHHHHHHHHh
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
..-++.|+|+|.+|+.+++.+..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~ 173 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKA 173 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH
Confidence 34578999999999999998864
No 285
>PLN02712 arogenate dehydrogenase
Probab=63.66 E-value=4.8 Score=35.12 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=19.7
Q ss_pred eeeCEEEEeeccccHHHHHHHHh
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+..+|.+||+|.+|+.+++.+.+
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~ 390 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVK 390 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHH
Confidence 44678999999999999998865
No 286
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=63.47 E-value=9.4 Score=31.36 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.4
Q ss_pred eeCEEEEeeccccHHHHHHHHh
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.++|+|||-|..|.+.+..+++
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHh
Confidence 3799999999999999987765
No 287
>PRK05261 putative phosphoketolase; Provisional
Probab=63.34 E-value=23 Score=32.10 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=39.7
Q ss_pred eCEEEEeeccccHHHHH-HHHhhhHHHHhc--CCeEEEEEEEcCCcceecccCCCCCCCHHHHHHH
Q 034422 7 IPSVLMGCGGVGRQLLQ-HIVSCRSLHANL--GVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEI 69 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~-~I~~~~~~~~k~--Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~ 69 (95)
-+|+|+.+|-. +.. .+.. .+.++++ |+++|||-|.|-- .+-+..+++.||++++.-++
T Consensus 614 pDvvL~atGse---v~leAlaA-a~~L~~~~pgikvRVVSv~dLf-~lQ~~~~~~~~lsd~~f~~l 674 (785)
T PRK05261 614 PDVVLACAGDV---PTLETLAA-ADLLREHFPDLKIRVVNVVDLM-KLQPPSEHPHGLSDREFDAL 674 (785)
T ss_pred CCEEEEEeCcH---hhHHHHHH-HHHHHhhCCCCCEEEEEechhh-hhCCcccCCCCCCHHHHHHh
Confidence 37888887653 333 4444 4456777 9999999998731 12233466999999988776
No 288
>PRK06194 hypothetical protein; Provisional
Probab=63.29 E-value=5.8 Score=29.07 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=20.3
Q ss_pred CCcceeeCEEEEe-eccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG-~G~VG~~Ll~~I~~ 27 (95)
|..|+.-.++|.| .|++|+++++.+.+
T Consensus 1 m~~~~~k~vlVtGasggIG~~la~~l~~ 28 (287)
T PRK06194 1 MKDFAGKVAVITGAASGFGLAFARIGAA 28 (287)
T ss_pred CcCCCCCEEEEeCCccHHHHHHHHHHHH
Confidence 5566444567777 58999999999876
No 289
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=63.24 E-value=6.5 Score=29.02 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=17.2
Q ss_pred CEEEEee-ccccHHHHHHHHh
Q 034422 8 PSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
+|+|+|. |.||+.+++++.+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~ 21 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQA 21 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHh
Confidence 4788888 9999999998865
No 290
>PLN02306 hydroxypyruvate reductase
Probab=63.20 E-value=4.9 Score=32.88 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=17.0
Q ss_pred eCEEEEeeccccHHHHHHHH
Q 034422 7 IPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~ 26 (95)
-.|-|+|+|.||+++++.+.
T Consensus 166 ktvGIiG~G~IG~~vA~~l~ 185 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMV 185 (386)
T ss_pred CEEEEECCCHHHHHHHHHHH
Confidence 35789999999999998754
No 291
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=62.89 E-value=6.8 Score=25.62 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=22.4
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEE
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVS 45 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVa 45 (95)
++.-+|+|+|-|.|+..=++.+ .+.|-+++|++-.
T Consensus 5 l~~~~vlVvGgG~va~~k~~~L-------l~~gA~v~vis~~ 39 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLL-------LEAGAKVTVISPE 39 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHH-------CCCTBEEEEEESS
T ss_pred cCCCEEEEECCCHHHHHHHHHH-------HhCCCEEEEECCc
Confidence 3456789999999998555444 4556566665543
No 292
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=62.75 E-value=11 Score=27.20 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=17.9
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
++|+|||-|-.|..++..+.+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~ 21 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD 21 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 479999999999999987643
No 293
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=62.73 E-value=5.9 Score=31.00 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.9
Q ss_pred eCEEEEeeccccHHHHHHHHhh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
.+|+|||-|-+|.+.+-++.++
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~ 24 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQER 24 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHh
Confidence 7999999999999999888764
No 294
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=62.64 E-value=9.6 Score=28.94 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=17.6
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|+|||-|..|..++..+.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~ 20 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR 20 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc
Confidence 58999999999999987764
No 295
>PRK08244 hypothetical protein; Provisional
Probab=62.55 E-value=8.8 Score=31.12 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=23.3
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEE
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVG 43 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvg 43 (95)
.+|+|||-|.+|..++-.+.+ +|+++.|+=
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~-------~G~~v~viE 32 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL-------AGVKTCVIE 32 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH-------CCCcEEEEe
Confidence 689999999999999987754 466655543
No 296
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=62.47 E-value=6.9 Score=27.60 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=21.3
Q ss_pred CCcceeeCEEEEe-eccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG-~G~VG~~Ll~~I~~ 27 (95)
|-.|+.-.++|.| .|++|+++++.+.+
T Consensus 1 ~~~~~~~~vlItGa~g~iG~~la~~l~~ 28 (245)
T PRK12936 1 MFDLSGRKALVTGASGGIGEEIARLLHA 28 (245)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 4456555678888 69999999999975
No 297
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=62.30 E-value=6 Score=33.15 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=23.7
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCR 29 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~ 29 (95)
|+.++|+|||-|-+|.+++..+.+..
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~ 26 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYE 26 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhC
Confidence 67899999999999999999998854
No 298
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=62.19 E-value=5.7 Score=30.75 Aligned_cols=20 Identities=25% Similarity=0.601 Sum_probs=18.2
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++|+|.|++|++.+..+.+
T Consensus 129 ~vlIlGaGGaaraia~aL~~ 148 (284)
T PRK12549 129 RVVQLGAGGAGAAVAHALLT 148 (284)
T ss_pred EEEEECCcHHHHHHHHHHHH
Confidence 68999999999999998875
No 299
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=62.03 E-value=6.5 Score=32.69 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=18.1
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||.|.+|++++..+.+
T Consensus 6 kIavIG~G~MG~~iA~~la~ 25 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLL 25 (495)
T ss_pred EEEEECcCHHHHHHHHHHHh
Confidence 58999999999999998875
No 300
>PLN02596 hexokinase-like
Probab=62.01 E-value=9.7 Score=32.45 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=24.4
Q ss_pred ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422 15 GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD 46 (95)
Q Consensus 15 G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD 46 (95)
|.||+-+++++ ++.++++|++++|+||.|
T Consensus 201 ~~vG~Dvv~lL---~~Al~r~~l~v~v~AivN 229 (490)
T PLN02596 201 DTVGKALVNDI---NRALEKHGLKIRVFALVD 229 (490)
T ss_pred CccCcHHHHHH---HHHHHhcCCCceEEEEEE
Confidence 67999999998 345666799999999998
No 301
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=61.94 E-value=1.3 Score=37.24 Aligned_cols=20 Identities=35% Similarity=0.715 Sum_probs=18.0
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|+.||||.||++-+-+|.+
T Consensus 15 pIimIGfGSigrgTLPLier 34 (481)
T COG5310 15 PIIMIGFGSIGRGTLPLIER 34 (481)
T ss_pred cEEEEeecccccccchhHHH
Confidence 68999999999999988876
No 302
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=61.77 E-value=5.8 Score=30.44 Aligned_cols=20 Identities=15% Similarity=0.441 Sum_probs=18.3
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||+|.+|+++++.+.+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~ 21 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLR 21 (301)
T ss_pred EEEEEcccHHHHHHHHHHHH
Confidence 58999999999999999875
No 303
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=61.76 E-value=5.8 Score=31.71 Aligned_cols=19 Identities=21% Similarity=0.524 Sum_probs=15.9
Q ss_pred CEEEEeeccccHHHHHHHH
Q 034422 8 PSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~ 26 (95)
.|-|||+|.||+++++.+.
T Consensus 144 TvGIiG~G~IG~~va~~l~ 162 (324)
T COG0111 144 TVGIIGLGRIGRAVAKRLK 162 (324)
T ss_pred EEEEECCCHHHHHHHHHHH
Confidence 5689999999999987553
No 304
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=61.74 E-value=4.8 Score=33.05 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=20.3
Q ss_pred eCEEEEee-ccccHHHHHHHHhhhHH
Q 034422 7 IPSVLMGC-GGVGRQLLQHIVSCRSL 31 (95)
Q Consensus 7 I~v~LiG~-G~VG~~Ll~~I~~~~~~ 31 (95)
++|+++|. |.||+.+++++.+.+++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f 27 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDF 27 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCC
Confidence 57899998 99999999977665543
No 305
>PRK07576 short chain dehydrogenase; Provisional
Probab=61.69 E-value=7.1 Score=28.62 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=19.9
Q ss_pred CCcceee---CEEEEee-ccccHHHHHHHHh
Q 034422 1 MATLKKI---PSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I---~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
|.+|.++ .++|.|- |+||+++++++.+
T Consensus 1 ~~~~~~~~~k~ilItGasggIG~~la~~l~~ 31 (264)
T PRK07576 1 MTTMFDFAGKNVVVVGGTSGINLGIAQAFAR 31 (264)
T ss_pred CCccccCCCCEEEEECCCchHHHHHHHHHHH
Confidence 4455554 4677766 8999999999875
No 306
>PLN03139 formate dehydrogenase; Provisional
Probab=61.60 E-value=6 Score=32.50 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=17.5
Q ss_pred eCEEEEeeccccHHHHHHHH
Q 034422 7 IPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~ 26 (95)
-.|.|+|+|.+|+++++.+.
T Consensus 200 ktVGIVG~G~IG~~vA~~L~ 219 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLK 219 (386)
T ss_pred CEEEEEeecHHHHHHHHHHH
Confidence 36799999999999998875
No 307
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=61.43 E-value=5.5 Score=32.58 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=16.4
Q ss_pred CEEEEeeccccHHHHHHHH
Q 034422 8 PSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~ 26 (95)
.|-|+|+|++|+++++.+.
T Consensus 153 tvGIiG~G~IG~~vA~~~~ 171 (409)
T PRK11790 153 TLGIVGYGHIGTQLSVLAE 171 (409)
T ss_pred EEEEECCCHHHHHHHHHHH
Confidence 5789999999999998654
No 308
>PRK08226 short chain dehydrogenase; Provisional
Probab=61.02 E-value=7.3 Score=28.11 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=21.6
Q ss_pred CCcceeeCEEEEe-eccccHHHHHHHHhh
Q 034422 1 MATLKKIPSVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 1 ~~~mk~I~v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
|.+|+.-.++|.| .|++|+++++.+.++
T Consensus 1 ~~~~~~~~~lItG~s~giG~~la~~l~~~ 29 (263)
T PRK08226 1 MGKLTGKTALITGALQGIGEGIARVFARH 29 (263)
T ss_pred CCCCCCCEEEEeCCCChHHHHHHHHHHHC
Confidence 5667655667777 788999999998763
No 309
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=61.02 E-value=5.8 Score=31.18 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.0
Q ss_pred eeCEEEEeeccccHHHHHHHHh
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
..+|+|+|.|.+|..++-.+.+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~ 23 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR 23 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh
Confidence 4689999999999999877655
No 310
>PLN00106 malate dehydrogenase
Probab=60.96 E-value=6 Score=31.61 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.2
Q ss_pred eeCEEEEee-ccccHHHHHHHHh
Q 034422 6 KIPSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 6 ~I~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
.-+|.|+|. |+||+.++..+..
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~ 40 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKM 40 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh
Confidence 358999999 9999999998875
No 311
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=60.85 E-value=18 Score=31.79 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=37.9
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCe----E-EEEEEEcCCcceecccCCCCCCCHH
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVH----L-RVVGVSDSKSLVVASDVFTKEFNDN 64 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~----l-rVvgVaDSk~~l~~~d~~~~GLd~~ 64 (95)
.+..+|+++|.|.-|-+.+++|...- ..+.|+. . ++ -++||+|++.+.. ++.|++.
T Consensus 319 l~d~riv~~GAGsAgigia~ll~~~~--~~~~Gls~eeA~~~i-~~vD~~GLi~~~r--~~~l~~~ 379 (581)
T PLN03129 319 LADQRILFAGAGEAGTGIAELIALAM--SRQTGISEEEARKRI-WLVDSKGLVTKSR--KDSLQPF 379 (581)
T ss_pred hhhceEEEECCCHHHHHHHHHHHHHH--HhhcCCChhhhcCcE-EEEcCCCeEeCCC--CccChHH
Confidence 45678999999999999999997621 1112431 1 33 5679999999643 3346544
No 312
>PRK07588 hypothetical protein; Provisional
Probab=60.83 E-value=10 Score=29.49 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=18.2
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.+|+|||-|-+|.+++-.+.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH
Confidence 378999999999999988764
No 313
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=60.48 E-value=6.2 Score=30.11 Aligned_cols=21 Identities=19% Similarity=0.556 Sum_probs=18.5
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
-+++|+|.|++|++.+..+..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~ 144 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLD 144 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHH
Confidence 367999999999999999874
No 314
>PRK05993 short chain dehydrogenase; Provisional
Probab=60.39 E-value=8.6 Score=28.41 Aligned_cols=19 Identities=26% Similarity=0.635 Sum_probs=16.2
Q ss_pred EEEEee-ccccHHHHHHHHh
Q 034422 9 SVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 9 v~LiG~-G~VG~~Ll~~I~~ 27 (95)
++|.|. |++|+++++.+.+
T Consensus 7 vlItGasggiG~~la~~l~~ 26 (277)
T PRK05993 7 ILITGCSSGIGAYCARALQS 26 (277)
T ss_pred EEEeCCCcHHHHHHHHHHHH
Confidence 588887 9999999998865
No 315
>PRK06180 short chain dehydrogenase; Provisional
Probab=60.30 E-value=9 Score=28.22 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=16.2
Q ss_pred EEEEee-ccccHHHHHHHHh
Q 034422 9 SVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 9 v~LiG~-G~VG~~Ll~~I~~ 27 (95)
++|.|. |++|+++++++.+
T Consensus 7 vlVtGasggiG~~la~~l~~ 26 (277)
T PRK06180 7 WLITGVSSGFGRALAQAALA 26 (277)
T ss_pred EEEecCCChHHHHHHHHHHh
Confidence 588886 8899999999875
No 316
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=60.01 E-value=8.1 Score=30.60 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=21.9
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
|..++|+|||-|..|.+.+..++++
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~ 25 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKA 25 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHc
Confidence 4578999999999999999888774
No 317
>PLN02463 lycopene beta cyclase
Probab=59.96 E-value=11 Score=31.13 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.2
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
...++|+|||.|..|.+++.++.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~ 49 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSE 49 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHH
Confidence 345799999999999999988753
No 318
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=59.90 E-value=7.3 Score=30.68 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.7
Q ss_pred eCEEEEeeccccHHHHHHHHhh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
.+|.|+|.|+.|.+++..+.+.
T Consensus 8 mkI~IiGaGa~G~alA~~La~~ 29 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARR 29 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHC
Confidence 5789999999999999998864
No 319
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=59.84 E-value=7.5 Score=26.97 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=23.6
Q ss_pred EEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422 10 VLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV 42 (95)
Q Consensus 10 ~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv 42 (95)
+|||.|.-|.+++++|.++. ..+..+++.|+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~--~~~~~~~I~vf 31 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA--DPKPPLEITVF 31 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc--CCCCCCEEEEE
Confidence 58999999999999999876 22335555555
No 320
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.64 E-value=8.5 Score=28.37 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=21.6
Q ss_pred CCcceeeCEEEEe---eccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMG---CGGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG---~G~VG~~Ll~~I~~ 27 (95)
|++|+.=.++|.| .+++|+++++.+.+
T Consensus 1 ~~~l~~k~vlItGas~~~GIG~a~a~~l~~ 30 (260)
T PRK06997 1 MGFLAGKRILITGLLSNRSIAYGIAKACKR 30 (260)
T ss_pred CCccCCcEEEEeCCCCCCcHHHHHHHHHHH
Confidence 6777654578999 46999999999876
No 321
>PTZ00369 Ras-like protein; Provisional
Probab=59.44 E-value=6.6 Score=27.49 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=20.5
Q ss_pred CCcceeeCEEEEeeccccH-HHHHHHHh
Q 034422 1 MATLKKIPSVLMGCGGVGR-QLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G~VG~-~Ll~~I~~ 27 (95)
|. |..++|+++|-.+||. +|++.+..
T Consensus 1 ~~-~~~~Ki~iiG~~~~GKTsLi~~~~~ 27 (189)
T PTZ00369 1 MA-STEYKLVVVGGGGVGKSALTIQFIQ 27 (189)
T ss_pred CC-CcceEEEEECCCCCCHHHHHHHHhc
Confidence 44 7889999999999995 55666655
No 322
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=58.78 E-value=6.5 Score=33.49 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=17.2
Q ss_pred eCEEEEeeccccHHHHHHHH
Q 034422 7 IPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~ 26 (95)
-.|.|+|+|.||+++++.+.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~ 274 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALR 274 (476)
T ss_pred CEEEEECCCHHHHHHHHHHH
Confidence 35799999999999998775
No 323
>PRK05442 malate dehydrogenase; Provisional
Probab=58.64 E-value=8.4 Score=30.72 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=17.8
Q ss_pred eCEEEEee-ccccHHHHHHHHh
Q 034422 7 IPSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
.+|.|+|. |.||..++-.+..
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~ 26 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIAS 26 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHh
Confidence 47899999 9999999876664
No 324
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=58.48 E-value=6.3 Score=30.60 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=16.3
Q ss_pred EEEEeeccccHHHHHHHHh
Q 034422 9 SVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 9 v~LiG~G~VG~~Ll~~I~~ 27 (95)
|.|||.|+||.+++-.+..
T Consensus 1 i~iiGaG~VG~~~a~~l~~ 19 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA 19 (300)
T ss_pred CEEECCCHHHHHHHHHHHh
Confidence 5799999999999976665
No 325
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.47 E-value=7 Score=29.66 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=17.6
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||.|.+|++++..+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~ 22 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAV 22 (288)
T ss_pred EEEEECccHHHHHHHHHHHh
Confidence 47999999999999988865
No 326
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=58.41 E-value=12 Score=28.70 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.9
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|+|||-|-.|.+++..+.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~ 20 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR 20 (382)
T ss_pred CEEEECccHHHHHHHHHHhc
Confidence 58999999999999988875
No 327
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=58.32 E-value=7.8 Score=30.76 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=17.7
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||+|+.|+++++-+..
T Consensus 5 kIgiIG~G~mG~AiA~~L~~ 24 (314)
T TIGR00465 5 TVAIIGYGSQGHAQALNLRD 24 (314)
T ss_pred EEEEEeEcHHHHHHHHHHHH
Confidence 47999999999999998864
No 328
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=58.24 E-value=8.9 Score=28.57 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=21.4
Q ss_pred CCcceeeCEEEEeec---cccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMGCG---GVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G---~VG~~Ll~~I~~ 27 (95)
|+.|+.=.++|.|-+ ++|+++++.+.+
T Consensus 1 ~~~l~~k~~lITGas~~~GIG~aia~~la~ 30 (262)
T PRK07984 1 MGFLSGKRILVTGVASKLSIAYGIAQAMHR 30 (262)
T ss_pred CcccCCCEEEEeCCCCCccHHHHHHHHHHH
Confidence 667754457899985 799999999875
No 329
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=58.03 E-value=7.5 Score=29.85 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=18.0
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||+|.+|+++++.+.+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~ 21 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRE 21 (299)
T ss_pred EEEEEcccHHHHHHHHHHHh
Confidence 58999999999999998875
No 330
>PRK05086 malate dehydrogenase; Provisional
Probab=58.00 E-value=6.1 Score=31.08 Aligned_cols=21 Identities=24% Similarity=0.616 Sum_probs=18.2
Q ss_pred eCEEEEee-ccccHHHHHHHHh
Q 034422 7 IPSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
.+|.|+|. |+||++++.++..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~ 22 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKT 22 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHc
Confidence 36899999 9999999988854
No 331
>PLN02985 squalene monooxygenase
Probab=57.89 E-value=12 Score=31.27 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=21.1
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+....+|+|||-|.+|.+++-.+.+
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~ 64 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAK 64 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHH
Confidence 3456799999999999999988865
No 332
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=57.85 E-value=12 Score=29.26 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=18.8
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
++|+|||-|..|...+..+.+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~ 21 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR 21 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 479999999999999988875
No 333
>PLN02427 UDP-apiose/xylose synthase
Probab=57.85 E-value=7.9 Score=30.15 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=20.1
Q ss_pred eeeCEEEEe-eccccHHHHHHHHhh
Q 034422 5 KKIPSVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 5 k~I~v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
++.+|+|.| .|-||+.|++.+.++
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~ 37 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTE 37 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhc
Confidence 445689999 599999999998874
No 334
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=57.83 E-value=4.8 Score=32.46 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.0
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++.-+|+|+|+|++|.+.++-+..
T Consensus 23 KL~~SrVLVVG~GGLGsEVAKnLaL 47 (287)
T PTZ00245 23 QLMHTSVALHGVAGAAAEAAKNLVL 47 (287)
T ss_pred HHhhCeEEEECCCchHHHHHHHHHH
Confidence 5667789999999999999987754
No 335
>PLN02240 UDP-glucose 4-epimerase
Probab=57.82 E-value=8 Score=29.22 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=20.1
Q ss_pred cceeeCEEEEe-eccccHHHHHHHHhh
Q 034422 3 TLKKIPSVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 3 ~mk~I~v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
+|+.-+|+|.| .|.||+++++++.++
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~ 28 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLA 28 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC
Confidence 34445678997 599999999998863
No 336
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=57.66 E-value=8.6 Score=27.00 Aligned_cols=24 Identities=42% Similarity=0.819 Sum_probs=18.6
Q ss_pred ceeeCEEEEeeccccHH-HHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQ-LLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~-Ll~~I~~ 27 (95)
|+.++|+++|-++||.. |+..+..
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~ 27 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVG 27 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhc
Confidence 66799999999999976 4444444
No 337
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=57.24 E-value=7.6 Score=32.45 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=22.2
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
+...+|+|||-|-||.+++.++.+.
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~ 27 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKEL 27 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHh
Confidence 5668999999999999999999873
No 338
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=56.96 E-value=8.3 Score=32.90 Aligned_cols=21 Identities=14% Similarity=0.403 Sum_probs=18.9
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
-.++|+|+|.+|+.+++.+.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~ 421 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMA 421 (601)
T ss_pred CCEEEecCchHHHHHHHHHHh
Confidence 468999999999999999875
No 339
>PRK09135 pteridine reductase; Provisional
Probab=56.84 E-value=9.6 Score=26.84 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=18.3
Q ss_pred ceeeCEEEEee-ccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
|+.-.++|.|. |++|+.+++++.+
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~ 28 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHA 28 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHH
Confidence 33344678874 8999999999975
No 340
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=56.81 E-value=19 Score=26.31 Aligned_cols=20 Identities=20% Similarity=0.579 Sum_probs=18.0
Q ss_pred EEEEe-eccccHHHHHHHHhh
Q 034422 9 SVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 9 v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
|+|.| -|-||+.|++.+.++
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~ 23 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAA 23 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhC
Confidence 89999 599999999999876
No 341
>PRK10262 thioredoxin reductase; Provisional
Probab=56.69 E-value=10 Score=28.77 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=24.5
Q ss_pred CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|+|-+..+|+|||-|.-|-+-+..+.+
T Consensus 1 ~~~~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 1 MGTTKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHH
Confidence 889999999999999999998887766
No 342
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=56.67 E-value=7.8 Score=29.81 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=18.1
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||+|..|.++++.+.+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~ 21 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAK 21 (298)
T ss_pred EEEEEcchHHHHHHHHHHHH
Confidence 58999999999999999865
No 343
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=56.66 E-value=8.7 Score=28.85 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=17.8
Q ss_pred CEEEEe-eccccHHHHHHHHhh
Q 034422 8 PSVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 8 ~v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
+|+|.| .|.||+.+++.+.++
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~ 23 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQN 23 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHC
Confidence 578999 699999999988753
No 344
>PRK08017 oxidoreductase; Provisional
Probab=56.60 E-value=9.4 Score=27.25 Aligned_cols=19 Identities=21% Similarity=0.608 Sum_probs=17.3
Q ss_pred EEEEee-ccccHHHHHHHHh
Q 034422 9 SVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 9 v~LiG~-G~VG~~Ll~~I~~ 27 (95)
++|.|. |++|+++++.+.+
T Consensus 5 vlVtGasg~IG~~la~~l~~ 24 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKR 24 (256)
T ss_pred EEEECCCChHHHHHHHHHHH
Confidence 799998 9999999999975
No 345
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=56.60 E-value=7.7 Score=30.36 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=17.7
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||.|.||...+..+..
T Consensus 3 KV~VIGaG~vG~~iA~~la~ 22 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAE 22 (305)
T ss_pred EEEEECcCHHHHHHHHHHHH
Confidence 68999999999999987764
No 346
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=56.55 E-value=19 Score=29.17 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=27.4
Q ss_pred CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK 48 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk 48 (95)
+++|+|.|.-|..+++.+.+.++. ..+++|+.|.+
T Consensus 127 rvlIiGag~~~~~l~~~l~~~~~~------g~~vvGfidd~ 161 (456)
T TIGR03022 127 PAVIIGAGQNAAILYRALQSNPQL------GLRPLAVVDTD 161 (456)
T ss_pred eEEEEeCCHHHHHHHHHHhhCccC------CcEEEEEEeCC
Confidence 589999999999999888653322 36899988864
No 347
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=56.37 E-value=9.3 Score=30.75 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=20.1
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
++.-+++|+|.|.+|+..++.+..
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~ 188 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANG 188 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHH
Confidence 355679999999999999988764
No 348
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=56.33 E-value=13 Score=29.06 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=18.9
Q ss_pred eeCEEEEeeccccHHHHHHHHh
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
..+|+|||-|.+|..++-.+.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~ 23 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL 23 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4689999999999999877654
No 349
>PRK07326 short chain dehydrogenase; Provisional
Probab=56.23 E-value=11 Score=26.63 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=18.8
Q ss_pred cceeeCEEEEe-eccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG-~G~VG~~Ll~~I~~ 27 (95)
.|+.-.++|.| -|++|+++++.+.+
T Consensus 3 ~~~~~~ilItGatg~iG~~la~~l~~ 28 (237)
T PRK07326 3 SLKGKVALITGGSKGIGFAIAEALLA 28 (237)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHH
Confidence 34444568887 59999999999864
No 350
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=56.16 E-value=9.7 Score=32.35 Aligned_cols=22 Identities=18% Similarity=0.534 Sum_probs=19.3
Q ss_pred eeCEEEEeeccccHHHHHHHHh
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
...|+|||||+-|+=+++-+.+
T Consensus 52 tl~IaIIGfGnmGqflAetli~ 73 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLID 73 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHh
Confidence 4678999999999999988765
No 351
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=56.04 E-value=8.4 Score=30.11 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=18.7
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|+|||-|-+|.+.+.++++
T Consensus 3 ~vvIIGaG~~G~~~A~~La~ 22 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQ 22 (410)
T ss_pred EEEEECCCHHHHHHHHHHHH
Confidence 88999999999999999886
No 352
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=56.01 E-value=9.8 Score=31.54 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=21.0
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
++..+|+|||-|.+|.+.+..+.+
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~ 27 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAG 27 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH
Confidence 457999999999999999987765
No 353
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=55.96 E-value=8.8 Score=29.97 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=21.6
Q ss_pred eeeCEEEEeeccccHHHHHHHHhh
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
+..+|+|||-|-+|.+.+-++.++
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~ 52 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE 52 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh
Confidence 567999999999999999998874
No 354
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=55.77 E-value=7.7 Score=32.18 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=18.0
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
=+|+|+|+|.||+.+++.+..
T Consensus 196 k~VvViG~G~IG~~vA~~ak~ 216 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARG 216 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhh
Confidence 367999999999999987763
No 355
>PRK08589 short chain dehydrogenase; Validated
Probab=55.66 E-value=10 Score=27.94 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=21.0
Q ss_pred CCcceeeCEEEEee-ccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
|.+|+.=.++|.|. +++|+++++.+.+
T Consensus 1 m~~l~~k~vlItGas~gIG~aia~~l~~ 28 (272)
T PRK08589 1 MKRLENKVAVITGASTGIGQASAIALAQ 28 (272)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHH
Confidence 56665445688887 8999999999886
No 356
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=55.44 E-value=9.5 Score=29.49 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=17.9
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||.|++|.++++.+.+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~ 21 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLAR 21 (292)
T ss_pred eEEEEccCHHHHHHHHHHHH
Confidence 48999999999999998865
No 357
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.30 E-value=8.8 Score=30.11 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=26.4
Q ss_pred CEEEEeecc-ccHHHHHHHHhhh----------HHHHh--cCCeEEEEEE
Q 034422 8 PSVLMGCGG-VGRQLLQHIVSCR----------SLHAN--LGVHLRVVGV 44 (95)
Q Consensus 8 ~v~LiG~G~-VG~~Ll~~I~~~~----------~~~~k--~Gi~lrVvgV 44 (95)
+++++|.|+ ||++++.++.++. +.+++ ++.|+-|.++
T Consensus 161 ~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~At 210 (283)
T PRK14192 161 HAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAV 210 (283)
T ss_pred EEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHHHHhccCCEEEEcc
Confidence 689999999 9999999887521 11222 2667777776
No 358
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=55.28 E-value=14 Score=29.23 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=22.7
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEE
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVG 43 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvg 43 (95)
.+|+|||-|.+|.+++-.+.+ +|+++.|+=
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-------~G~~v~viE 32 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK-------AGIDNVILE 32 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH-------CCCCEEEEE
Confidence 679999999999999976644 566655544
No 359
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=55.19 E-value=16 Score=27.87 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.5
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.+|+|||-|.+|.+.+-++.+
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~ 21 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAK 21 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHH
Confidence 378999999999999988765
No 360
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=55.13 E-value=9 Score=27.94 Aligned_cols=21 Identities=14% Similarity=0.528 Sum_probs=18.1
Q ss_pred CEEEEe-eccccHHHHHHHHhh
Q 034422 8 PSVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 8 ~v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
+|+|+| .|.+|+.+++++.++
T Consensus 19 ~ilItGasG~iG~~l~~~L~~~ 40 (251)
T PLN00141 19 TVFVAGATGRTGKRIVEQLLAK 40 (251)
T ss_pred eEEEECCCcHHHHHHHHHHHhC
Confidence 579999 499999999998763
No 361
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]
Probab=55.12 E-value=13 Score=30.83 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=34.4
Q ss_pred cceeeCEEEEeeccccHHHHHHHHhhh--H-------HHHhc-CC---eEEEEEEEcCCccee
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVSCR--S-------LHANL-GV---HLRVVGVSDSKSLVV 52 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~--~-------~~~k~-Gi---~lrVvgVaDSk~~l~ 52 (95)
++..|+|+|+|.|++-+.|++=|..-| + ++..+ |+ ++.+|+-.|...-=+
T Consensus 2 ~~~~vrv~iiG~Gn~AssLvqgie~~k~~e~~~~~g~~~~~~~~~~~~dieivaafdvd~~KV 64 (362)
T COG1260 2 TTTMVRVAIIGVGNCASSLVQGIEYYKAGEDEPVPGLMHRDEGGYKVEDIEIVAAFDVDARKV 64 (362)
T ss_pred CcceEEEEEEeccchHHHHHHHHHHHhccCCCccceeccccccCcCccceEEEEeecccHhhc
Confidence 567899999999999999998887744 1 11211 22 577888887543333
No 362
>PRK07454 short chain dehydrogenase; Provisional
Probab=54.81 E-value=13 Score=26.43 Aligned_cols=23 Identities=13% Similarity=0.495 Sum_probs=18.0
Q ss_pred cceeeCEEEEee-ccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
.|+. ++|.|. |++|+++++.+.+
T Consensus 5 ~~k~--vlItG~sg~iG~~la~~l~~ 28 (241)
T PRK07454 5 SMPR--ALITGASSGIGKATALAFAK 28 (241)
T ss_pred CCCE--EEEeCCCchHHHHHHHHHHH
Confidence 4554 477775 9999999999975
No 363
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=54.64 E-value=9.5 Score=30.01 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=19.0
Q ss_pred CEEEEeeccccHHHHHHHHhhh
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCR 29 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~ 29 (95)
+|.+||+|+.|++++.-+.++.
T Consensus 3 ~IgfIG~G~Mg~Ai~~gl~~~g 24 (266)
T COG0345 3 KIGFIGAGNMGEAILSGLLKSG 24 (266)
T ss_pred eEEEEccCHHHHHHHHHHHhcC
Confidence 5699999999999999887744
No 364
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=54.60 E-value=5.3 Score=33.21 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=20.7
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
++..-+|.|+|+|++|.+.++-+..
T Consensus 17 ~L~~s~VlliG~gglGsEilKNLvL 41 (425)
T cd01493 17 ALESAHVCLLNATATGTEILKNLVL 41 (425)
T ss_pred HHhhCeEEEEcCcHHHHHHHHHHHH
Confidence 4556789999999999999987754
No 365
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=54.51 E-value=13 Score=30.25 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=19.9
Q ss_pred eeCEEEEee-ccccHHHHHHHHhh
Q 034422 6 KIPSVLMGC-GGVGRQLLQHIVSC 28 (95)
Q Consensus 6 ~I~v~LiG~-G~VG~~Ll~~I~~~ 28 (95)
.++|+|+|- |.||++|++++.+.
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~h 61 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANH 61 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhC
Confidence 358899998 89999999988775
No 366
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.45 E-value=11 Score=30.37 Aligned_cols=19 Identities=16% Similarity=0.513 Sum_probs=16.2
Q ss_pred EEEEeeccccHHHHHHHHh
Q 034422 9 SVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 9 v~LiG~G~VG~~Ll~~I~~ 27 (95)
++++|.|+.|.++++.+.+
T Consensus 9 ~~v~G~G~sG~s~a~~L~~ 27 (448)
T PRK03803 9 HIVVGLGKTGLSVVRFLAR 27 (448)
T ss_pred EEEEeecHhHHHHHHHHHh
Confidence 5779999999998888764
No 367
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=54.32 E-value=6.1 Score=29.39 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=22.1
Q ss_pred CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS 47 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS 47 (95)
+|++||+|.-|++.+.-++ +-|+++.|.--.+|
T Consensus 6 ~IAViGyGsQG~a~AlNLr-------DSG~~V~Vglr~~s 38 (165)
T PF07991_consen 6 TIAVIGYGSQGHAHALNLR-------DSGVNVIVGLREGS 38 (165)
T ss_dssp EEEEES-SHHHHHHHHHHH-------HCC-EEEEEE-TTC
T ss_pred EEEEECCChHHHHHHHHHH-------hCCCCEEEEecCCC
Confidence 5799999999998776553 34777776666666
No 368
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=54.19 E-value=8.4 Score=28.97 Aligned_cols=40 Identities=28% Similarity=0.490 Sum_probs=24.7
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEE-EcCCc
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGV-SDSKS 49 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgV-aDSk~ 49 (95)
|++| +++|.||||..-.-.-.. ..+.++|- ||.-| +|.++
T Consensus 1 ~~~i--~~~gKGGVGKTT~a~nLA--~~La~~G~--rVLliD~Dpq~ 41 (279)
T PRK13230 1 MRKF--CFYGKGGIGKSTTVCNIA--AALAESGK--KVLVVGCDPKA 41 (279)
T ss_pred CcEE--EEECCCCCcHHHHHHHHH--HHHHhCCC--EEEEEeeCCcc
Confidence 6666 677999999987433221 23456673 56656 55553
No 369
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=54.15 E-value=17 Score=28.40 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=17.9
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|+|||.|.-|-.+++.+.+
T Consensus 4 ~vvIiG~G~AG~~~a~~lr~ 23 (377)
T PRK04965 4 GIVIIGSGFAARQLVKNIRK 23 (377)
T ss_pred CEEEECCcHHHHHHHHHHHh
Confidence 78999999999999998854
No 370
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=54.02 E-value=11 Score=27.53 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=17.8
Q ss_pred CEEEEe-eccccHHHHHHHHhh
Q 034422 8 PSVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 8 ~v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
+|+|+| .|.||+++++.+.++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~ 22 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE 22 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc
Confidence 478899 599999999998763
No 371
>PRK08264 short chain dehydrogenase; Validated
Probab=53.95 E-value=11 Score=26.58 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=19.2
Q ss_pred ceeeCEEEEe-eccccHHHHHHHHhh
Q 034422 4 LKKIPSVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 4 mk~I~v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
|+.=.++|.| -|++|+++++.+.++
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~ 29 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLAR 29 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC
Confidence 3333578888 599999999998764
No 372
>PRK06924 short chain dehydrogenase; Provisional
Probab=53.90 E-value=12 Score=26.74 Aligned_cols=20 Identities=15% Similarity=0.507 Sum_probs=16.6
Q ss_pred CEEEEe-eccccHHHHHHHHh
Q 034422 8 PSVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG-~G~VG~~Ll~~I~~ 27 (95)
.++|.| .|++|+++++.+.+
T Consensus 3 ~vlItGasggiG~~ia~~l~~ 23 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLE 23 (251)
T ss_pred EEEEecCCchHHHHHHHHHHh
Confidence 357887 69999999999875
No 373
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=53.76 E-value=8.8 Score=32.03 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=17.6
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
-+++|+|+|.||+.+++.+..
T Consensus 213 k~VlViG~G~IG~~vA~~lr~ 233 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRG 233 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHh
Confidence 358999999999999887753
No 374
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=53.70 E-value=9.1 Score=31.57 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=26.1
Q ss_pred eeeCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422 5 KKIPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVV 42 (95)
Q Consensus 5 k~I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv 42 (95)
+.++|.|+|. |+||.+++-.|..+.-.-+.+-|.|.++
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~ 81 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLL 81 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEe
Confidence 4689999999 9999999998876322212334445444
No 375
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=53.67 E-value=10 Score=31.06 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=18.4
Q ss_pred ceeeCEEEEeeccccHHHHHHHH
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~ 26 (95)
++.=+|.+||+|.+|++.++.+.
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~ 36 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLR 36 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHH
Confidence 34456899999999999987664
No 376
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=53.49 E-value=10 Score=26.52 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=16.3
Q ss_pred EEEEe-eccccHHHHHHHHhh
Q 034422 9 SVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 9 v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
|+|+| .|-||+++++++.++
T Consensus 1 IlI~GatG~iG~~l~~~l~~~ 21 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKK 21 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHT
T ss_pred EEEEccCCHHHHHHHHHHHHc
Confidence 46777 899999999988764
No 377
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=53.39 E-value=12 Score=24.46 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=18.7
Q ss_pred eCEEEEeeccccH-HHHHHHHhhh
Q 034422 7 IPSVLMGCGGVGR-QLLQHIVSCR 29 (95)
Q Consensus 7 I~v~LiG~G~VG~-~Ll~~I~~~~ 29 (95)
++|+++|-.+||. +|++.+..++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC
Confidence 5899999999996 7777777644
No 378
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=53.34 E-value=13 Score=29.81 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=28.3
Q ss_pred CcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcce
Q 034422 2 ATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLV 51 (95)
Q Consensus 2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l 51 (95)
++|+.-+|+|||-|..|-..++.+. +.+ .+|+-|..+.-..
T Consensus 6 ~~~~~~~vVIvGgG~aGl~~a~~L~-------~~~--~~ItlI~~~~~~~ 46 (424)
T PTZ00318 6 ARLKKPNVVVLGTGWAGAYFVRNLD-------PKK--YNITVISPRNHML 46 (424)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHhC-------cCC--CeEEEEcCCCCcc
Confidence 5677889999999999998887663 223 4455555554443
No 379
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=53.23 E-value=9.2 Score=32.21 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=17.3
Q ss_pred eCEEEEeeccccHHHHHHHH
Q 034422 7 IPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~ 26 (95)
-.|.|+|+|.+|+++++.+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~ 158 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAK 158 (525)
T ss_pred CEEEEECCCHHHHHHHHHHH
Confidence 35799999999999998764
No 380
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=53.17 E-value=19 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=23.0
Q ss_pred CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV 42 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv 42 (95)
+|+|||-|..|-+.+..+. +.+.++-++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~-------~~~~~v~ii 28 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELA-------RPGAKVLII 28 (201)
T ss_dssp EEEEESSSHHHHHHHHHHH-------HTTSEEEEE
T ss_pred CEEEEecHHHHHHHHHHHh-------cCCCeEEEE
Confidence 5899999999999999888 556666555
No 381
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=52.81 E-value=12 Score=25.07 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=16.4
Q ss_pred eCEEEEeecccc-HHHHHHHHh
Q 034422 7 IPSVLMGCGGVG-RQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG-~~Ll~~I~~ 27 (95)
++|+++|..+|| ++|+..+..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~ 22 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYAN 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 478999999999 456666655
No 382
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=52.78 E-value=10 Score=29.21 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=18.1
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.++|.|.+|.+++..+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~ 23 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFAR 23 (308)
T ss_pred EEEEECccHHHHHHHHHHHH
Confidence 58999999999999998776
No 383
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=52.73 E-value=11 Score=30.16 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=21.1
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|+.++|+|||-|..|.+.+..+.+
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~ 24 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAK 24 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHH
Confidence 677999999999999999877665
No 384
>PRK11445 putative oxidoreductase; Provisional
Probab=52.60 E-value=9.3 Score=29.64 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=18.8
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
++|+|||.|..|.+++..+.+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~ 22 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG 22 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc
Confidence 589999999999999988765
No 385
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=52.53 E-value=11 Score=29.93 Aligned_cols=20 Identities=25% Similarity=0.604 Sum_probs=18.0
Q ss_pred CEEEEe-eccccHHHHHHHHh
Q 034422 8 PSVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG-~G~VG~~Ll~~I~~ 27 (95)
+|+|+| -|.||++|++++.+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~ 21 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEE 21 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHh
Confidence 578999 89999999999976
No 386
>PRK05868 hypothetical protein; Validated
Probab=52.40 E-value=17 Score=28.50 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=21.0
Q ss_pred CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV 42 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv 42 (95)
+|+|+|-|-+|.+++-.+.+ +|+++.|+
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~-------~G~~v~vi 30 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGR-------HGYSVTMV 30 (372)
T ss_pred eEEEECCCHHHHHHHHHHHh-------CCCCEEEE
Confidence 57999999999999876543 46665554
No 387
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.39 E-value=10 Score=31.10 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=17.8
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.++|+|+.|+++++.+.+
T Consensus 17 ~v~v~G~G~sG~a~a~~L~~ 36 (473)
T PRK00141 17 RVLVAGAGVSGRGIAAMLSE 36 (473)
T ss_pred eEEEEccCHHHHHHHHHHHH
Confidence 47999999999999999874
No 388
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=52.35 E-value=17 Score=26.09 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=16.8
Q ss_pred EEEEee-ccccHHHHHHHHh
Q 034422 9 SVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 9 v~LiG~-G~VG~~Ll~~I~~ 27 (95)
|+|+|- |.+|+.+++.|.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~ 20 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS 20 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH
T ss_pred CEEECCccHHHHHHHHHHHh
Confidence 578885 9999999999987
No 389
>PRK08265 short chain dehydrogenase; Provisional
Probab=52.31 E-value=13 Score=27.20 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=20.8
Q ss_pred CCcceeeCEEEEee-ccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
|..|+.=.++|.|. |++|+++++.+.+
T Consensus 1 m~~~~~k~vlItGas~gIG~~ia~~l~~ 28 (261)
T PRK08265 1 MIGLAGKVAIVTGGATLIGAAVARALVA 28 (261)
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 55565446688885 8999999999875
No 390
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=52.08 E-value=12 Score=29.88 Aligned_cols=20 Identities=25% Similarity=0.687 Sum_probs=15.8
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+++++|.|++|++++..+..
T Consensus 2 ki~~~GaGa~gr~~~~~~l~ 21 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLA 21 (381)
T ss_pred ceEEECCchhhHHHHHHHHH
Confidence 68999999999988554443
No 391
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=52.07 E-value=14 Score=24.91 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=18.7
Q ss_pred eeCEEEEeecccc-HHHHHHHHhh
Q 034422 6 KIPSVLMGCGGVG-RQLLQHIVSC 28 (95)
Q Consensus 6 ~I~v~LiG~G~VG-~~Ll~~I~~~ 28 (95)
.++|+++|-.+|| ++|++.+...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999 5677777654
No 392
>PRK12828 short chain dehydrogenase; Provisional
Probab=51.79 E-value=14 Score=25.69 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=19.0
Q ss_pred cceeeCEEEEe-eccccHHHHHHHHhh
Q 034422 3 TLKKIPSVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 3 ~mk~I~v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
+++.=.++|.| .|.||+++++++.++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~ 30 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAAR 30 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHC
Confidence 34333467887 499999999999763
No 393
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=51.69 E-value=20 Score=30.47 Aligned_cols=64 Identities=19% Similarity=0.287 Sum_probs=44.7
Q ss_pred ceeeCEEEEeeccccHHHH--------------------------HHHHh-hhHHHHhcCCeEEEEEEEcCCcceeccc-
Q 034422 4 LKKIPSVLMGCGGVGRQLL--------------------------QHIVS-CRSLHANLGVHLRVVGVSDSKSLVVASD- 55 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll--------------------------~~I~~-~~~~~~k~Gi~lrVvgVaDSk~~l~~~d- 55 (95)
|+.++|++||-|.+..... +.+.. .+.+.++.|.+++|...+|.+.++-+.|
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdf 80 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADF 80 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCCE
Confidence 7889999999999876532 22222 3335567799999999999999987555
Q ss_pred ----CCCCCCCHHHHH
Q 034422 56 ----VFTKEFNDNLLS 67 (95)
Q Consensus 56 ----~~~~GLd~~~ll 67 (95)
+-..|++..+.-
T Consensus 81 Vi~~~rvG~l~~r~~D 96 (442)
T COG1486 81 VITQIRVGGLEAREKD 96 (442)
T ss_pred EEEEEeeCCcccchhh
Confidence 235677644433
No 394
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.43 E-value=13 Score=27.32 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=20.9
Q ss_pred CCcceeeCEEEEee---ccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMGC---GGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG~---G~VG~~Ll~~I~~ 27 (95)
|+.|+.=.++|.|- +++|.++++++.+
T Consensus 2 ~~~~~~k~~lItGa~~s~GIG~a~a~~la~ 31 (256)
T PRK07889 2 MGLLEGKRILVTGVITDSSIAFHVARVAQE 31 (256)
T ss_pred cccccCCEEEEeCCCCcchHHHHHHHHHHH
Confidence 55565445789995 7999999999875
No 395
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.42 E-value=14 Score=26.20 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=17.8
Q ss_pred cceeeCEEEEe-eccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG-~G~VG~~Ll~~I~~ 27 (95)
.|+.=.++|.| .|+||+++++++.+
T Consensus 3 ~~~~~~vlitGasg~iG~~l~~~l~~ 28 (252)
T PRK06077 3 SLKDKVVVVTGSGRGIGRAIAVRLAK 28 (252)
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHH
Confidence 34333457777 56799999999875
No 396
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=51.27 E-value=13 Score=26.45 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=20.4
Q ss_pred CCcceeeCEEEEe-eccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG-~G~VG~~Ll~~I~~ 27 (95)
|.+|+.=.++|.| .|++|+++++.+.+
T Consensus 1 ~~~~~~~~~lItG~s~~iG~~la~~l~~ 28 (247)
T PRK12935 1 MVQLNGKVAIVTGGAKGIGKAITVALAQ 28 (247)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 5566544567777 89999999999874
No 397
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.15 E-value=13 Score=26.25 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=19.8
Q ss_pred ceeeCEEEEee-ccccHHHHHHHHhh
Q 034422 4 LKKIPSVLMGC-GGVGRQLLQHIVSC 28 (95)
Q Consensus 4 mk~I~v~LiG~-G~VG~~Ll~~I~~~ 28 (95)
|+.-.++|.|. |++|+.+++.+.++
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~ 28 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQK 28 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC
Confidence 44446789997 99999999988763
No 398
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=51.15 E-value=11 Score=28.98 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=20.4
Q ss_pred ceeeCEEEEe-eccccHHHHHHHHhh
Q 034422 4 LKKIPSVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 4 mk~I~v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
|+.-+|+|.| .|-+|+.|++.+.++
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~ 38 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFL 38 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHC
Confidence 4445789999 599999999999864
No 399
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=51.10 E-value=20 Score=27.50 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.0
Q ss_pred eeCEEEEeeccccHHHHHHHHh
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
..+|+|||-|..|..++-.+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~ 26 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQ 26 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHh
Confidence 5689999999999999977654
No 400
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=51.02 E-value=19 Score=30.58 Aligned_cols=35 Identities=37% Similarity=0.619 Sum_probs=30.2
Q ss_pred eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS 47 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS 47 (95)
+.|+|=+||-|--|+.++.||.+-. | ++||+|+|.
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m~------G--m~vvaisd~ 50 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASMP------G--MEVVAISDR 50 (438)
T ss_pred CceEEEEecccccchHHHHHHhhcC------C--ceEEEEecc
Confidence 6899999999999999999997522 4 789999995
No 401
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=51.00 E-value=30 Score=27.55 Aligned_cols=29 Identities=24% Similarity=0.504 Sum_probs=21.0
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcC
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLG 36 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~G 36 (95)
++|++.|.||+|...+-.+.- ..++++.|
T Consensus 1 mkIaI~GKGG~GKTtiaalll-~~l~~~~~ 29 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLL-KRLLSKGG 29 (255)
T ss_pred CeEEEecCCCccHHHHHHHHH-HHHHhcCC
Confidence 368999999999998776643 23445555
No 402
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=50.96 E-value=16 Score=24.14 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=17.9
Q ss_pred CEEEEeecccc-HHHHHHHHhhh
Q 034422 8 PSVLMGCGGVG-RQLLQHIVSCR 29 (95)
Q Consensus 8 ~v~LiG~G~VG-~~Ll~~I~~~~ 29 (95)
||+++|-.+|| ++|++.+...+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999 55888887743
No 403
>PRK06475 salicylate hydroxylase; Provisional
Probab=50.88 E-value=20 Score=28.15 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=22.7
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEE
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVG 43 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvg 43 (95)
-+|+|||-|-.|.+++-.+.+ +|+++.|+=
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~-------~G~~V~i~E 32 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA-------RGWAVTIIE 32 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh-------CCCcEEEEe
Confidence 578999999999999877643 466655544
No 404
>PRK06953 short chain dehydrogenase; Provisional
Probab=50.53 E-value=16 Score=25.80 Aligned_cols=19 Identities=21% Similarity=0.676 Sum_probs=15.9
Q ss_pred EEEEe-eccccHHHHHHHHh
Q 034422 9 SVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 9 v~LiG-~G~VG~~Ll~~I~~ 27 (95)
++|.| .|++|+++++.+.+
T Consensus 4 vlvtG~sg~iG~~la~~L~~ 23 (222)
T PRK06953 4 VLIVGASRGIGREFVRQYRA 23 (222)
T ss_pred EEEEcCCCchhHHHHHHHHh
Confidence 47777 79999999999874
No 405
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=50.51 E-value=20 Score=28.53 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=28.9
Q ss_pred eeCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcc
Q 034422 6 KIPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSL 50 (95)
Q Consensus 6 ~I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~ 50 (95)
.|+|+|.|+ |-.|+.+++.+.+.. ++.+++..|+++.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~--------~~~L~aa~~~~~~ 39 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAP--------DLELVAAFDRPGS 39 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCC--------CceEEEEEecCCc
Confidence 467999999 999999999887633 4677777777654
No 406
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=50.44 E-value=11 Score=31.81 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=17.4
Q ss_pred eCEEEEeeccccHHHHHHHH
Q 034422 7 IPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~ 26 (95)
-.|.++|+|.+|+++++.+.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~ 160 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAK 160 (526)
T ss_pred CEEEEECCCHHHHHHHHHHH
Confidence 35799999999999998875
No 407
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=50.25 E-value=34 Score=25.33 Aligned_cols=38 Identities=32% Similarity=0.469 Sum_probs=22.9
Q ss_pred EEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEE-EcCCcc
Q 034422 9 SVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGV-SDSKSL 50 (95)
Q Consensus 9 v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgV-aDSk~~ 50 (95)
|++.|.||||+...-.-.. ..+.++| .||..| +|.++.
T Consensus 3 i~~~gKGGVGKTT~~~nLA--~~La~~g--~rVLliD~D~q~~ 41 (268)
T TIGR01281 3 LAVYGKGGIGKSTTSSNLS--VAFAKLG--KRVLQIGCDPKHD 41 (268)
T ss_pred EEEEcCCcCcHHHHHHHHH--HHHHhCC--CeEEEEecCcccc
Confidence 6777999999987433222 1344566 355555 566553
No 408
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=50.18 E-value=13 Score=29.56 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=24.6
Q ss_pred CEEEEee-ccccHHHHHHHHhhhHHHH-hcCCeEEEEEE
Q 034422 8 PSVLMGC-GGVGRQLLQHIVSCRSLHA-NLGVHLRVVGV 44 (95)
Q Consensus 8 ~v~LiG~-G~VG~~Ll~~I~~~~~~~~-k~Gi~lrVvgV 44 (95)
+|.|+|. |.||..++..+.. +.... ...+++.++-+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~-~~~~~~~~e~el~LiD~ 38 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIAR-GRMLGKDQPIILHLLDI 38 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHh-ccccCCCCccEEEEEec
Confidence 5899999 9999999988765 22221 13345666655
No 409
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=50.15 E-value=18 Score=28.39 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=18.7
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
++|+|||-|-.|-+++..+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~ 21 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCK 21 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 478999999999999988875
No 410
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=49.93 E-value=15 Score=24.28 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=16.6
Q ss_pred eCEEEEeecccc-HHHHHHHHh
Q 034422 7 IPSVLMGCGGVG-RQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG-~~Ll~~I~~ 27 (95)
++|+++|..+|| ++|+..+..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 579999999999 566666654
No 411
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=49.75 E-value=13 Score=27.89 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=21.9
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|+.-+|.++|+|+.|.+.++.+..
T Consensus 27 ~l~~s~vlvvG~GglG~~~~~~la~ 51 (254)
T COG0476 27 KLKDSRVLVVGAGGLGSPAAKYLAL 51 (254)
T ss_pred HHhhCCEEEEecChhHHHHHHHHHH
Confidence 5677899999999999999988775
No 412
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.66 E-value=15 Score=29.69 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=21.4
Q ss_pred CCccee-eCEEEEeeccccHHHHHHHHhh
Q 034422 1 MATLKK-IPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 1 ~~~mk~-I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
|.|.+. -+|.++|.|+.|.+-++.+.++
T Consensus 1 ~~~~~~~~~v~viG~G~sG~s~~~~l~~~ 29 (438)
T PRK04663 1 MDRWQGIKNVVVVGLGITGLSVVKHLRKY 29 (438)
T ss_pred CCcccCCceEEEEeccHHHHHHHHHHHhc
Confidence 344444 3479999999999999987764
No 413
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=49.26 E-value=11 Score=28.03 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=17.6
Q ss_pred CEEEEe-eccccHHHHHHHHh
Q 034422 8 PSVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG-~G~VG~~Ll~~I~~ 27 (95)
+|+|.| .|.||+.+++++.+
T Consensus 6 ~ilVtGatGfIG~~l~~~L~~ 26 (322)
T PLN02662 6 VVCVTGASGYIASWLVKLLLQ 26 (322)
T ss_pred EEEEECChHHHHHHHHHHHHH
Confidence 478998 79999999999876
No 414
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=49.21 E-value=15 Score=26.86 Aligned_cols=21 Identities=14% Similarity=0.463 Sum_probs=17.3
Q ss_pred CEEEEe-eccccHHHHHHHHhh
Q 034422 8 PSVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 8 ~v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
+|+|.| .|.||+++++++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~ 22 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLES 22 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhC
Confidence 467786 699999999999763
No 415
>PRK08177 short chain dehydrogenase; Provisional
Probab=49.08 E-value=16 Score=25.84 Aligned_cols=19 Identities=21% Similarity=0.663 Sum_probs=16.3
Q ss_pred EEEEe-eccccHHHHHHHHh
Q 034422 9 SVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 9 v~LiG-~G~VG~~Ll~~I~~ 27 (95)
++|.| .|++|+++++++.+
T Consensus 4 vlItG~sg~iG~~la~~l~~ 23 (225)
T PRK08177 4 ALIIGASRGLGLGLVDRLLE 23 (225)
T ss_pred EEEeCCCchHHHHHHHHHHh
Confidence 57777 79999999999876
No 416
>PLN02494 adenosylhomocysteinase
Probab=49.08 E-value=12 Score=32.06 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=17.0
Q ss_pred eCEEEEeeccccHHHHHHHH
Q 034422 7 IPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~ 26 (95)
=.|+|+|+|.||+++++.+.
T Consensus 255 KtVvViGyG~IGr~vA~~ak 274 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMK 274 (477)
T ss_pred CEEEEECCCHHHHHHHHHHH
Confidence 36799999999999998763
No 417
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=49.08 E-value=14 Score=29.76 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=19.1
Q ss_pred CEEEEeeccccHHHHHHHHhh
Q 034422 8 PSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
+|.++|.|+.|.+++..+..+
T Consensus 1 kI~VIGaG~wGtALA~~la~n 21 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN 21 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc
Confidence 589999999999999999873
No 418
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=48.90 E-value=16 Score=30.70 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=21.0
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
....+|+|||-|.+|.+.+..+.+
T Consensus 4 ~~~~DVvIIGGGi~G~~iA~~La~ 27 (546)
T PRK11101 4 SQETDVIIIGGGATGAGIARDCAL 27 (546)
T ss_pred CccccEEEECcCHHHHHHHHHHHH
Confidence 346899999999999999998876
No 419
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=48.87 E-value=18 Score=32.52 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=19.1
Q ss_pred eeCEEEEeeccccHHHHHHHHh
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.-+|+|||-|.+|...++.+.+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~ 24 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLD 24 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHh
Confidence 3479999999999999998875
No 420
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=48.85 E-value=16 Score=24.66 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=17.5
Q ss_pred eCEEEEeecccc-HHHHHHHHhh
Q 034422 7 IPSVLMGCGGVG-RQLLQHIVSC 28 (95)
Q Consensus 7 I~v~LiG~G~VG-~~Ll~~I~~~ 28 (95)
++|+++|-.+|| ++|++.+...
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~ 23 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSE 23 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 478999999999 5677777663
No 421
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=48.83 E-value=14 Score=29.50 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=21.6
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|+.++|+|||-|..|.+.+..+.+
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~ 24 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAK 24 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHH
Confidence 678999999999999999888776
No 422
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=48.78 E-value=14 Score=29.54 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.1
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|+.++|+|||-|.-|.+.+..+.+
T Consensus 1 ~~~~dvvVIG~GpaG~~aA~~l~~ 24 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLAS 24 (438)
T ss_pred CCccCEEEECCCHHHHHHHHHHHh
Confidence 678999999999999998877765
No 423
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=48.69 E-value=23 Score=27.35 Aligned_cols=20 Identities=15% Similarity=0.312 Sum_probs=17.6
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|+|||-|..|.+++..+.+
T Consensus 1 DviIiGaG~AGl~~A~~la~ 20 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR 20 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh
Confidence 58999999999999987763
No 424
>KOG1531 consensus F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=48.66 E-value=19 Score=29.26 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=28.7
Q ss_pred eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCccee
Q 034422 14 CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVV 52 (95)
Q Consensus 14 ~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~ 52 (95)
||+|-+++++++...-..... |.+++||+|.|-..+.+
T Consensus 110 CGgihssi~K~~r~~l~~~~~-~~e~~vv~iGdK~ra~l 147 (304)
T KOG1531|consen 110 CGGIHSSIAKKARRELNDLKG-GKEVRVVIIGDKIRAIL 147 (304)
T ss_pred ccchhHHHHHHHHHHHHhccC-CCceEEEEEchhhhhhe
Confidence 899999999988654333333 89999999999755443
No 425
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.55 E-value=17 Score=26.39 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=20.8
Q ss_pred CCcceeeCEEEEeec---cccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMGCG---GVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G---~VG~~Ll~~I~~ 27 (95)
|.+++.=.++|.|.. ++|+++++++.+
T Consensus 1 ~~~l~~k~vlVtGas~~~giG~~~a~~l~~ 30 (256)
T PRK12859 1 MNQLKNKVAVVTGVSRLDGIGAAICKELAE 30 (256)
T ss_pred CCCcCCcEEEEECCCCCCChHHHHHHHHHH
Confidence 555544467999984 899999999876
No 426
>CHL00194 ycf39 Ycf39; Provisional
Probab=48.50 E-value=13 Score=28.20 Aligned_cols=20 Identities=25% Similarity=0.677 Sum_probs=17.6
Q ss_pred CEEEEe-eccccHHHHHHHHh
Q 034422 8 PSVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG-~G~VG~~Ll~~I~~ 27 (95)
+|+|.| .|.||+.+++.+.+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~ 22 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALD 22 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHH
Confidence 589999 59999999999875
No 427
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=48.48 E-value=14 Score=31.81 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=17.9
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||+|++|.++++.+.+
T Consensus 5 ~I~IIG~G~mG~ala~~l~~ 24 (735)
T PRK14806 5 RVVVIGLGLIGGSFAKALRE 24 (735)
T ss_pred EEEEEeeCHHHHHHHHHHHh
Confidence 57999999999999998865
No 428
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=48.42 E-value=17 Score=26.52 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=17.5
Q ss_pred CEEEEee-ccccHHHHHHHHhh
Q 034422 8 PSVLMGC-GGVGRQLLQHIVSC 28 (95)
Q Consensus 8 ~v~LiG~-G~VG~~Ll~~I~~~ 28 (95)
+|+|.|- |.+|+++++++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~ 22 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE 22 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh
Confidence 4788885 99999999998764
No 429
>PRK10015 oxidoreductase; Provisional
Probab=48.37 E-value=24 Score=28.56 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=20.7
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+..++|+|||-|..|.+.+..+++
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~ 26 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMAR 26 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHh
Confidence 346899999999999999988765
No 430
>PLN02852 ferredoxin-NADP+ reductase
Probab=48.36 E-value=28 Score=29.42 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=19.1
Q ss_pred CEEEEeeccccHHHHHHHHhh
Q 034422 8 PSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
+|+|||-|+|+-..++.+.+.
T Consensus 168 ~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 168 TAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred EEEEECCCHHHHHHHHHHHhC
Confidence 689999999999999998875
No 431
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=48.27 E-value=16 Score=27.91 Aligned_cols=20 Identities=25% Similarity=0.589 Sum_probs=17.6
Q ss_pred CEEEEee-ccccHHHHHHHHh
Q 034422 8 PSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
+|+|.|. |.||+.|++++.+
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~ 23 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILE 23 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHh
Confidence 4799996 9999999999875
No 432
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.12 E-value=16 Score=30.04 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=17.7
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.++|+|+.|.++++.+.+
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~ 28 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCAR 28 (498)
T ss_pred EEEEEeecHhHHHHHHHHHH
Confidence 57999999999999888765
No 433
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=48.07 E-value=67 Score=29.36 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=43.3
Q ss_pred CEEEEeeccccHHHHHHHHhhhHHHHhcC--CeEEEEEEEcCCcceecccCCCCCCCHHHHHHH
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCRSLHANLG--VHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEI 69 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~G--i~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~ 69 (95)
+|+++.+|.+ .+.+.++. -+.+++.+ +.+|||-|.|-..+.-..| +|.|+|+++.-.+
T Consensus 625 dvV~A~~Gd~--~t~e~laA-a~~L~e~~p~l~vRvVnVvdl~rLq~~~~-hphg~~d~efd~l 684 (793)
T COG3957 625 DVVMACAGDV--PTIEVLAA-AQILREEGPELRVRVVNVVDLMRLQPPHD-HPHGLSDAEFDSL 684 (793)
T ss_pred CEEEEecCCc--chHHHHHH-HHHHHHhCccceEEEEEEecchhccCCcc-CCCCCCHHHHHhc
Confidence 6888888887 34455544 33566666 9999999999887776555 6899999977655
No 434
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=47.91 E-value=16 Score=22.92 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=19.4
Q ss_pred eeCEEEEeecccc-HHHHHHHHhhh
Q 034422 6 KIPSVLMGCGGVG-RQLLQHIVSCR 29 (95)
Q Consensus 6 ~I~v~LiG~G~VG-~~Ll~~I~~~~ 29 (95)
.++|+++|.-++| ++|++++..++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999 56777777755
No 435
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=47.90 E-value=17 Score=23.69 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=17.3
Q ss_pred eCEEEEeeccccHH-HHHHHHh
Q 034422 7 IPSVLMGCGGVGRQ-LLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~-Ll~~I~~ 27 (95)
++|+++|..+||.. |++.+..
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999987 6777764
No 436
>PRK05884 short chain dehydrogenase; Provisional
Probab=47.71 E-value=17 Score=26.14 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=17.0
Q ss_pred CEEEEee-ccccHHHHHHHHh
Q 034422 8 PSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
+++|.|. |++|+++++.+.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~ 22 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRN 22 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHH
Confidence 4788886 8999999999875
No 437
>PRK07023 short chain dehydrogenase; Provisional
Probab=47.68 E-value=17 Score=25.88 Aligned_cols=20 Identities=20% Similarity=0.559 Sum_probs=16.3
Q ss_pred CEEEEee-ccccHHHHHHHHh
Q 034422 8 PSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
+++|.|. |++|+++++++.+
T Consensus 3 ~vlItGasggiG~~ia~~l~~ 23 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQ 23 (243)
T ss_pred eEEEecCCcchHHHHHHHHHh
Confidence 4577775 9999999999864
No 438
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=47.54 E-value=13 Score=30.14 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=17.3
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.++|.|.||..++..++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~ 21 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ 21 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 58999999999999977763
No 439
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=47.41 E-value=18 Score=25.53 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=15.6
Q ss_pred EEEEee-ccccHHHHHHHHh
Q 034422 9 SVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 9 v~LiG~-G~VG~~Ll~~I~~ 27 (95)
++|.|. |+||+++++++.+
T Consensus 4 ~lItGa~g~iG~~l~~~l~~ 23 (247)
T PRK09730 4 ALVTGGSRGIGRATALLLAQ 23 (247)
T ss_pred EEEeCCCchHHHHHHHHHHH
Confidence 477775 8999999999975
No 440
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=47.41 E-value=13 Score=29.56 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.1
Q ss_pred eCEEEEee-ccccHHHHHHHHhhh
Q 034422 7 IPSVLMGC-GGVGRQLLQHIVSCR 29 (95)
Q Consensus 7 I~v~LiG~-G~VG~~Ll~~I~~~~ 29 (95)
++|.|+|. |+|++.++.=+..-|
T Consensus 1 igV~lvG~~GnvaTt~v~Gi~a~k 24 (295)
T PF07994_consen 1 IGVALVGAGGNVATTLVAGIEANK 24 (295)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHH
Confidence 57999999 999999999888744
No 441
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.31 E-value=14 Score=29.46 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=20.6
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.|+.-+++++|.|.+|.++++.+.+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~ 26 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKK 26 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHH
Confidence 3555678999999999999988874
No 442
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=47.29 E-value=13 Score=28.95 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=19.6
Q ss_pred eeeCEEEEeeccccHHHHHHHHh
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
..-+|.++|.|.+|+..++.+..
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~ 199 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAA 199 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHH
Confidence 45678999999999999988865
No 443
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=46.96 E-value=16 Score=25.19 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=19.5
Q ss_pred cceeeCEEEEeeccccHH-HHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQ-LLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~-Ll~~I~~ 27 (95)
.++.++|+++|-.+||.. |++.+..
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~ 31 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKL 31 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHcc
Confidence 368899999999999975 5565543
No 444
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=46.86 E-value=13 Score=26.49 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=19.2
Q ss_pred CCcceeeCEEEEeeccccHH-HHHHH
Q 034422 1 MATLKKIPSVLMGCGGVGRQ-LLQHI 25 (95)
Q Consensus 1 ~~~mk~I~v~LiG~G~VG~~-Ll~~I 25 (95)
|..|..++|+++|-.+||.. |++.+
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~ 29 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRH 29 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHH
Confidence 35678899999999999975 45333
No 445
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=46.84 E-value=16 Score=29.21 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.0
Q ss_pred cceeeCEEEEeeccccHHHHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|+.++|++||-|..|.+.+..+.+
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~ 26 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAK 26 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHh
Confidence 5788999999999999998887766
No 446
>PRK12829 short chain dehydrogenase; Provisional
Probab=46.77 E-value=15 Score=26.21 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=20.1
Q ss_pred cceeeCEEEEee-ccccHHHHHHHHhh
Q 034422 3 TLKKIPSVLMGC-GGVGRQLLQHIVSC 28 (95)
Q Consensus 3 ~mk~I~v~LiG~-G~VG~~Ll~~I~~~ 28 (95)
.|+.-+++|.|. |++|+.+++++.++
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~ 34 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEA 34 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHC
Confidence 355556788886 89999999998753
No 447
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=46.68 E-value=15 Score=24.35 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=16.4
Q ss_pred EEEEe-eccccHHHHHHHHhh
Q 034422 9 SVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 9 v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
++|.| .+++|+++++++.++
T Consensus 3 ~lItGa~~giG~~~a~~l~~~ 23 (167)
T PF00106_consen 3 VLITGASSGIGRALARALARR 23 (167)
T ss_dssp EEEETTTSHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHhc
Confidence 35666 899999999999885
No 448
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.66 E-value=17 Score=29.26 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=16.5
Q ss_pred CEEEEeeccccHHHHHHHH
Q 034422 8 PSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~ 26 (95)
+|.++|+|+.|.+.++.+.
T Consensus 11 ~i~viG~G~~G~~~a~~l~ 29 (460)
T PRK01390 11 TVAVFGLGGSGLATARALV 29 (460)
T ss_pred EEEEEeecHhHHHHHHHHH
Confidence 6899999999999877765
No 449
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=46.63 E-value=13 Score=28.57 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=15.9
Q ss_pred EEEEeeccccHHHHHHHHh
Q 034422 9 SVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 9 v~LiG~G~VG~~Ll~~I~~ 27 (95)
|.+||.|.||..++..+..
T Consensus 1 I~IIGaG~vG~~ia~~la~ 19 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL 19 (300)
T ss_pred CEEECCCHHHHHHHHHHHh
Confidence 5799999999998776653
No 450
>PF13809 Tubulin_2: Tubulin like
Probab=46.50 E-value=33 Score=27.20 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=26.8
Q ss_pred EEEeeccccHHHHHHHHhh-hHHHH--hcCCeEEEEEEEcCCc
Q 034422 10 VLMGCGGVGRQLLQHIVSC-RSLHA--NLGVHLRVVGVSDSKS 49 (95)
Q Consensus 10 ~LiG~G~VG~~Ll~~I~~~-~~~~~--k~Gi~lrVvgVaDSk~ 49 (95)
++||+|+.|...+..+.++ ++.+. +.--.++.+.|=-...
T Consensus 1 lvIGlGGTG~~~l~~l~~~l~~~~~~~~~~~~v~Fl~iDt~~~ 43 (345)
T PF13809_consen 1 LVIGLGGTGGKILARLRRRLREELGGLELPPCVQFLYIDTDEN 43 (345)
T ss_pred CEEEeCchHHHHHHHHHHHHHHHhcCcCCCCcEEEEEEEcCcc
Confidence 4899999999999999885 33232 3333477777644433
No 451
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=46.50 E-value=13 Score=30.30 Aligned_cols=20 Identities=15% Similarity=0.493 Sum_probs=17.7
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.++|+|.+|+++++-+..
T Consensus 164 ~vgilG~G~IG~~ia~rL~~ 183 (336)
T KOG0069|consen 164 TVGILGLGRIGKAIAKRLKP 183 (336)
T ss_pred EEEEecCcHHHHHHHHhhhh
Confidence 46999999999999998865
No 452
>PLN02405 hexokinase
Probab=46.44 E-value=24 Score=30.13 Aligned_cols=30 Identities=17% Similarity=0.459 Sum_probs=24.1
Q ss_pred ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422 15 GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS 47 (95)
Q Consensus 15 G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS 47 (95)
|.||+-+.+++.+ .++++|++++|++|.|-
T Consensus 201 ~~vG~DVv~lL~~---Al~r~~l~v~v~AlvND 230 (497)
T PLN02405 201 DAVGQDVVGELTK---AMERVGLDMRVSALVND 230 (497)
T ss_pred CccCchHHHHHHH---HHHHcCCCceEEEEEec
Confidence 6789998888854 45566999999999983
No 453
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=46.32 E-value=17 Score=30.66 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.2
Q ss_pred eeeCEEEEeeccccHHHHHHHHhhh
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVSCR 29 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~~~ 29 (95)
+..+|+|||-|-+|.+++.++.+..
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~ 68 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFT 68 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhC
Confidence 4589999999999999999998854
No 454
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=46.29 E-value=39 Score=25.94 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=23.7
Q ss_pred CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEE
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGV 44 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgV 44 (95)
+++++|+|.+|-+++..+.+. +.+.|+..+|.-|
T Consensus 147 ~vvVvG~G~~g~E~A~~l~~~---~~~~g~~~~V~li 180 (364)
T TIGR03169 147 RLAVVGGGAAGVEIALALRRR---LPKRGLRGQVTLI 180 (364)
T ss_pred eEEEECCCHHHHHHHHHHHHH---HHhcCCCceEEEE
Confidence 689999999999999988652 2344544344434
No 455
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=46.27 E-value=17 Score=25.23 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=17.9
Q ss_pred eCEEEEeecccc-HHHHHHHHhh
Q 034422 7 IPSVLMGCGGVG-RQLLQHIVSC 28 (95)
Q Consensus 7 I~v~LiG~G~VG-~~Ll~~I~~~ 28 (95)
++|+++|-++|| ++|+.++...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~ 24 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTN 24 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 689999999999 5677777653
No 456
>PLN02697 lycopene epsilon cyclase
Probab=46.26 E-value=22 Score=30.23 Aligned_cols=30 Identities=27% Similarity=0.622 Sum_probs=23.1
Q ss_pred eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV 42 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv 42 (95)
.++|+|||.|..|.+++..+.+ +|+++.++
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak-------~Gl~V~LI 137 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAK-------LGLNVGLI 137 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHh-------CCCcEEEe
Confidence 4799999999999999876653 36555554
No 457
>PLN02914 hexokinase
Probab=46.16 E-value=23 Score=30.20 Aligned_cols=30 Identities=17% Similarity=0.419 Sum_probs=24.4
Q ss_pred ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422 15 GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS 47 (95)
Q Consensus 15 G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS 47 (95)
|.+|+-+.+++.+ .++++|++++|+||.|-
T Consensus 201 gv~G~DVv~lL~~---Al~r~~l~v~v~AivND 230 (490)
T PLN02914 201 GTAGKDVVACLNE---AMERQGLDMRVSALVND 230 (490)
T ss_pred CccCchHHHHHHH---HHHHcCCCceEEEEEEc
Confidence 6799999988865 35667999999999873
No 458
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.12 E-value=18 Score=28.98 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=18.2
Q ss_pred cceeeCEEEEeeccccHHHHHHHH
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~ 26 (95)
.+..-++.++|+|+.|.+.++.+.
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l~ 26 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFFL 26 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHH
Confidence 333345799999999999997644
No 459
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=45.88 E-value=16 Score=29.50 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=20.0
Q ss_pred eeeCEEEEeeccccHHHHHHHHh
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
...+|+|||-|..|.+.+-.+++
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~ 26 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAR 26 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHh
Confidence 35899999999999999988764
No 460
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.83 E-value=14 Score=29.84 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.2
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
-+++++|.|.+|.+.++.+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHH
Confidence 368999999999999988865
No 461
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=45.81 E-value=14 Score=28.58 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.1
Q ss_pred eCEEEEeeccccHHHHHHHHhh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSC 28 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~ 28 (95)
++|+|||-|.+|.+++-.+.++
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~ 23 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQA 23 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcC
Confidence 5789999999999999887653
No 462
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=45.79 E-value=18 Score=25.61 Aligned_cols=21 Identities=19% Similarity=0.722 Sum_probs=17.6
Q ss_pred CEEEEe-eccccHHHHHHHHhh
Q 034422 8 PSVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 8 ~v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
+++|.| .|+||+++++++.++
T Consensus 2 ~vlItGas~gIG~~ia~~l~~~ 23 (235)
T PRK09009 2 NILIVGGSGGIGKAMVKQLLER 23 (235)
T ss_pred EEEEECCCChHHHHHHHHHHHh
Confidence 456777 899999999999875
No 463
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=45.77 E-value=16 Score=28.09 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=19.0
Q ss_pred eeCEEEEeeccccHHHHHHHHh
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.-+++|+|.|+.+++.+..+.+
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~ 146 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALAS 146 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHH
Confidence 3468999999999999998875
No 464
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=45.76 E-value=14 Score=29.61 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=16.4
Q ss_pred eCEEEEeeccccHHHHHHHH
Q 034422 7 IPSVLMGCGGVGRQLLQHIV 26 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~ 26 (95)
-.+-|+|.|.||+++++.+.
T Consensus 147 ktvGIiG~GrIG~avA~r~~ 166 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLK 166 (324)
T ss_pred CEEEEECCCHHHHHHHHHHh
Confidence 35689999999999987653
No 465
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=45.31 E-value=13 Score=24.43 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=17.3
Q ss_pred eeeCEEEEeeccccHH-HHHHHHh
Q 034422 5 KKIPSVLMGCGGVGRQ-LLQHIVS 27 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~-Ll~~I~~ 27 (95)
+.++|+++|-.+||.. |++.+..
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~ 24 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQ 24 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHh
Confidence 3579999999999975 4455544
No 466
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=45.19 E-value=28 Score=28.63 Aligned_cols=36 Identities=22% Similarity=0.459 Sum_probs=26.2
Q ss_pred eCEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422 7 IPSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS 47 (95)
Q Consensus 7 I~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS 47 (95)
-.+.++| .|-+|+.|++++.+... ..++|++-....
T Consensus 5 ~~vlVtGG~GflG~hlv~~L~~~~~-----~~~irv~D~~~~ 41 (361)
T KOG1430|consen 5 LSVLVTGGSGFLGQHLVQALLENEL-----KLEIRVVDKTPT 41 (361)
T ss_pred CEEEEECCccHHHHHHHHHHHhccc-----ccEEEEeccCcc
Confidence 3447777 99999999999988543 456776666654
No 467
>PF15141 DUF4574: Domain of unknown function (DUF4574)
Probab=45.17 E-value=1.1 Score=30.16 Aligned_cols=27 Identities=37% Similarity=0.657 Sum_probs=19.1
Q ss_pred CCcceee--CEEEEeeccccHHHHHHHHh
Q 034422 1 MATLKKI--PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I--~v~LiG~G~VG~~Ll~~I~~ 27 (95)
|++++.+ -+.++|+|+||.+|..++.=
T Consensus 1 M~~~r~~~~~~~llG~GGvG~~L~~LvtP 29 (84)
T PF15141_consen 1 MSSLRKALSVVALLGFGGVGYALFVLVTP 29 (84)
T ss_pred CchHHHHHHHHHHHHccchhheeeeEeCC
Confidence 4444443 35689999999999877753
No 468
>PRK08655 prephenate dehydrogenase; Provisional
Probab=45.13 E-value=16 Score=29.99 Aligned_cols=20 Identities=20% Similarity=0.552 Sum_probs=17.7
Q ss_pred CEEEEe-eccccHHHHHHHHh
Q 034422 8 PSVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG-~G~VG~~Ll~~I~~ 27 (95)
+|.++| +|.+|+++++.+.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~ 22 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKE 22 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHH
Confidence 579997 89999999999865
No 469
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=45.13 E-value=16 Score=26.91 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=18.6
Q ss_pred eeCEEEEeeccccHHHHHHHHh
Q 034422 6 KIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 6 ~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.-++.|+|-|.||...++.+.+
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~ 31 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLK 31 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHH
Confidence 3478999999999998887766
No 470
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.10 E-value=19 Score=25.52 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=17.3
Q ss_pred ceeeCEEEEe-eccccHHHHHHHHh
Q 034422 4 LKKIPSVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG-~G~VG~~Ll~~I~~ 27 (95)
|+.-.++|.| .|++|+++++++.+
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~ 29 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAK 29 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHH
Confidence 4333467777 66899999999864
No 471
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=45.06 E-value=18 Score=29.76 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.3
Q ss_pred eeeCEEEEeeccccHHHHHHHHh
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
..++|.+||.|.||..++..+.+
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~ 27 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK 27 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc
Confidence 44678999999999999998754
No 472
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=44.99 E-value=20 Score=27.26 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=17.5
Q ss_pred CEEEEee-ccccHHHHHHHHhh
Q 034422 8 PSVLMGC-GGVGRQLLQHIVSC 28 (95)
Q Consensus 8 ~v~LiG~-G~VG~~Ll~~I~~~ 28 (95)
+|+|.|. |.||+++++.+.++
T Consensus 3 ~vlVtGatGfIG~~l~~~L~~~ 24 (355)
T PRK10217 3 KILITGGAGFIGSALVRYIINE 24 (355)
T ss_pred EEEEEcCCcHHHHHHHHHHHHc
Confidence 3688885 88999999999874
No 473
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=44.96 E-value=16 Score=25.29 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=19.4
Q ss_pred cceeeCEEEEeeccccHH-HHHHHHh
Q 034422 3 TLKKIPSVLMGCGGVGRQ-LLQHIVS 27 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~-Ll~~I~~ 27 (95)
+++.++|+++|-.+||.. |+..+..
T Consensus 10 ~~~~~ki~l~G~~~~GKTsL~~~~~~ 35 (175)
T smart00177 10 GNKEMRILMVGLDAAGKTTILYKLKL 35 (175)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Confidence 357899999999999975 5566643
No 474
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=44.81 E-value=28 Score=28.09 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=27.7
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK 48 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk 48 (95)
-+++|+|-|.-+..+++.+.++. ....+++|+.|.+
T Consensus 126 ~rvLIvGag~~a~~l~~~L~~~~------~~g~~vvG~idd~ 161 (445)
T TIGR03025 126 RRVLIVGTGEAARELAAALSRNP------DLGYRVVGFVDDR 161 (445)
T ss_pred CcEEEEECCHHHHHHHHHHhhCc------cCCeEEEEEEeCC
Confidence 46899999999999988776532 2358999988753
No 475
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=44.61 E-value=19 Score=30.35 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=17.5
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.+||.|..|++++..+.+
T Consensus 9 ~V~VIGaG~MG~gIA~~la~ 28 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQ 28 (507)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 48999999999999988754
No 476
>PRK05693 short chain dehydrogenase; Provisional
Probab=44.60 E-value=20 Score=26.15 Aligned_cols=19 Identities=32% Similarity=0.800 Sum_probs=15.4
Q ss_pred EEEEee-ccccHHHHHHHHh
Q 034422 9 SVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 9 v~LiG~-G~VG~~Ll~~I~~ 27 (95)
++|.|. |++|+++++++.+
T Consensus 4 vlItGasggiG~~la~~l~~ 23 (274)
T PRK05693 4 VLITGCSSGIGRALADAFKA 23 (274)
T ss_pred EEEecCCChHHHHHHHHHHH
Confidence 477775 8999999999864
No 477
>PRK06198 short chain dehydrogenase; Provisional
Probab=44.55 E-value=20 Score=25.69 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=20.9
Q ss_pred CCcceeeCEEEEee-ccccHHHHHHHHhh
Q 034422 1 MATLKKIPSVLMGC-GGVGRQLLQHIVSC 28 (95)
Q Consensus 1 ~~~mk~I~v~LiG~-G~VG~~Ll~~I~~~ 28 (95)
|..|+.=.++|.|- |++|+.+++++.++
T Consensus 1 ~~~~~~k~vlItGa~g~iG~~la~~l~~~ 29 (260)
T PRK06198 1 MGRLDGKVALVTGGTQGLGAAIARAFAER 29 (260)
T ss_pred CCCCCCcEEEEeCCCchHHHHHHHHHHHC
Confidence 45565545788885 89999999999763
No 478
>PF01232 Mannitol_dh: Mannitol dehydrogenase Rossmann domain; InterPro: IPR013131 Mannitol-1-phosphate 5-dehydrogenase catalyses the NAD-dependent reduction of mannitol-1-phosphate to fructose-6-phosphate [] as part of the phosphoenolpyruvate-dependent phosphotransferase system (PTS). The PTS facilitates the vectorial translocation of metabolisable carbohydrates to form the corresponding sugar phosphates, which are then converted to glycolytic intermediates []. Mannitol 2-dehydrogenase catalyses the NAD-dependent reduction of mannitol to fructose []. Several dehydrogenases have been shown [] to be evolutionary related, including mannitol-1-phosphate 5-dehydrogenase (1.1.1.17 from EC) (gene mtlD), mannitol 2-dehydrogenase (1.1.1.67 from EC) (gene mtlK); mannonate oxidoreductase (1.1.1.57 from EC) (fructuronate reductase) (gene uxuB); Escherichia coli hypothetical proteins ydfI and yeiQ; and yeast hypothetical protein YEL070w. This domain has a Rossmann-type fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1M2W_A 1LJ8_A 3H2Z_A.
Probab=44.39 E-value=19 Score=25.18 Aligned_cols=21 Identities=19% Similarity=0.498 Sum_probs=14.1
Q ss_pred eCEEEEeeccccHH---HHHHHHh
Q 034422 7 IPSVLMGCGGVGRQ---LLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~---Ll~~I~~ 27 (95)
++++-+|.|+.+|+ ++..+..
T Consensus 1 m~ivhfG~Gnf~Rgh~a~i~~ll~ 24 (151)
T PF01232_consen 1 MKIVHFGAGNFHRGHQAFIDELLN 24 (151)
T ss_dssp -EEEEES-SHHHHHTHHCHHHHHC
T ss_pred CcEEEECCcHHHHHHHHHHHHHHh
Confidence 36789999999999 5444433
No 479
>PRK06057 short chain dehydrogenase; Provisional
Probab=44.39 E-value=19 Score=25.88 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=20.5
Q ss_pred CcceeeCEEEEee-ccccHHHHHHHHh
Q 034422 2 ATLKKIPSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 2 ~~mk~I~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
.+|+.=.++|+|. |++|+++++.+.+
T Consensus 3 ~~~~~~~vlItGasggIG~~~a~~l~~ 29 (255)
T PRK06057 3 QRLAGRVAVITGGGSGIGLATARRLAA 29 (255)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHH
Confidence 3454445789988 9999999999875
No 480
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.25 E-value=18 Score=29.03 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=17.3
Q ss_pred CEEEEeeccccHHHHHHHHh
Q 034422 8 PSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~ 27 (95)
+|.++|.|+.|.+.++.+.+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~ 21 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA 21 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH
Confidence 58999999999999887763
No 481
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=44.18 E-value=20 Score=27.13 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=20.1
Q ss_pred CCcceeeCEEEEe-eccccHHHHHHHHh
Q 034422 1 MATLKKIPSVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 1 ~~~mk~I~v~LiG-~G~VG~~Ll~~I~~ 27 (95)
|.+|+.=.++|.| .|++|+++++.+.+
T Consensus 1 m~~~~~k~vlVTGas~gIG~~~a~~L~~ 28 (322)
T PRK07453 1 MSQDAKGTVIITGASSGVGLYAAKALAK 28 (322)
T ss_pred CCCCCCCEEEEEcCCChHHHHHHHHHHH
Confidence 5555444567777 58999999999876
No 482
>PRK06182 short chain dehydrogenase; Validated
Probab=43.83 E-value=18 Score=26.40 Aligned_cols=20 Identities=15% Similarity=0.537 Sum_probs=16.9
Q ss_pred CEEEEee-ccccHHHHHHHHh
Q 034422 8 PSVLMGC-GGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG~-G~VG~~Ll~~I~~ 27 (95)
.++|.|. |++|+++++++.+
T Consensus 5 ~vlItGasggiG~~la~~l~~ 25 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAA 25 (273)
T ss_pred EEEEECCCChHHHHHHHHHHH
Confidence 4688885 8999999999875
No 483
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=43.82 E-value=16 Score=29.80 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=19.2
Q ss_pred eeeCEEEEeeccccHHHHHHHHh
Q 034422 5 KKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 5 k~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
..-++.++|+|.+|+.+++.+..
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~ 201 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLR 201 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHH
Confidence 34568999999999999988864
No 484
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=43.61 E-value=28 Score=28.95 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=26.6
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS 47 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS 47 (95)
-+++|+|.|.-|+.+++.+.+... ...+++|+.|.
T Consensus 147 rrvLIIGaG~~a~~l~~~L~~~~~------~g~~vVGfIDd 181 (476)
T PRK15204 147 KKTIILGSGQNARGAYSALQSEEM------MGFDVIAFFDT 181 (476)
T ss_pred CeEEEEECCHHHHHHHHHHHhCcc------CCcEEEEEEcC
Confidence 368999999999999988854322 23688888884
No 485
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=43.58 E-value=22 Score=23.49 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=16.9
Q ss_pred eCEEEEeeccccH-HHHHHHHh
Q 034422 7 IPSVLMGCGGVGR-QLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~-~Ll~~I~~ 27 (95)
++|+++|-.+||. +|++.+..
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999995 56777765
No 486
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=42.96 E-value=21 Score=23.50 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=18.2
Q ss_pred eCEEEEeeccccH-HHHHHHHhh
Q 034422 7 IPSVLMGCGGVGR-QLLQHIVSC 28 (95)
Q Consensus 7 I~v~LiG~G~VG~-~Ll~~I~~~ 28 (95)
++|+++|-.+||+ +|++.+...
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999998 778777753
No 487
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=42.89 E-value=28 Score=27.97 Aligned_cols=35 Identities=9% Similarity=0.123 Sum_probs=25.6
Q ss_pred CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422 8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS 49 (95)
Q Consensus 8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~ 49 (95)
+|+|||.|..|-+.++.+.+. +-+.+|+-|..++.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-------~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-------DKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-------CCCCCEEEEECCCC
Confidence 679999999999999999642 22456666666543
No 488
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=42.84 E-value=29 Score=27.63 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=18.7
Q ss_pred eCEEEEeeccccHHHHHHHHh
Q 034422 7 IPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
++|+|||-|..|.+.+..+++
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~ 21 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS 21 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh
Confidence 479999999999999988875
No 489
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=42.66 E-value=33 Score=28.40 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=25.5
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD 46 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD 46 (95)
++.-+|+|||.|..|-+-++.+.+ .|+++.|+==.+
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~-------~G~~v~vfE~~~ 43 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRR-------EGHTVVVFEREK 43 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHh-------cCCeEEEEecCC
Confidence 456789999999999988877654 466555544333
No 490
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=42.50 E-value=18 Score=24.54 Aligned_cols=26 Identities=12% Similarity=0.441 Sum_probs=20.2
Q ss_pred cceeeCEEEEeeccccH-HHHHHHHhh
Q 034422 3 TLKKIPSVLMGCGGVGR-QLLQHIVSC 28 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~-~Ll~~I~~~ 28 (95)
+++.++|+++|-.+||. +|++.+..+
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~ 37 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGE 37 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccC
Confidence 46778999999999995 566766643
No 491
>PRK05876 short chain dehydrogenase; Provisional
Probab=42.49 E-value=22 Score=26.47 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=20.3
Q ss_pred CCcceeeCEEEEe-eccccHHHHHHHHhh
Q 034422 1 MATLKKIPSVLMG-CGGVGRQLLQHIVSC 28 (95)
Q Consensus 1 ~~~mk~I~v~LiG-~G~VG~~Ll~~I~~~ 28 (95)
|-+|+.=.++|.| .|++|+++++.+.++
T Consensus 1 ~~~~~~k~vlVTGas~gIG~ala~~La~~ 29 (275)
T PRK05876 1 MDGFPGRGAVITGGASGIGLATGTEFARR 29 (275)
T ss_pred CCCcCCCEEEEeCCCchHHHHHHHHHHHC
Confidence 4555443467776 789999999998753
No 492
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=42.46 E-value=16 Score=27.35 Aligned_cols=42 Identities=21% Similarity=0.475 Sum_probs=25.2
Q ss_pred ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEE-EcCCcce
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGV-SDSKSLV 51 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgV-aDSk~~l 51 (95)
||.|- ++|.||||+...-.=.. ..+.++| .||.-| +|.++..
T Consensus 1 ~~~ia--v~gKGGVGKTT~a~nLA--~~La~~G--~rVllvD~Dpq~~~ 43 (273)
T PRK13232 1 MRQIA--IYGKGGIGKSTTTQNLT--AALSTMG--NKILLVGCDPKADS 43 (273)
T ss_pred CCEEE--EECCCCCcHHHHHHHHH--HHHHhhC--CCeEEEeccccccc
Confidence 66654 44999999987432211 2345566 466666 6665554
No 493
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=42.39 E-value=66 Score=21.07 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=26.6
Q ss_pred eCE-EEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422 7 IPS-VLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK 48 (95)
Q Consensus 7 I~v-~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk 48 (95)
.+| +++|.| ++++++- .+=++.++++|+++.+-+..-++
T Consensus 4 ~~ILl~C~~G-~sSS~l~--~k~~~~~~~~gi~~~v~a~~~~~ 43 (95)
T TIGR00853 4 TNILLLCAAG-MSTSLLV--NKMNKAAEEYGVPVKIAAGSYGA 43 (95)
T ss_pred cEEEEECCCc-hhHHHHH--HHHHHHHHHCCCcEEEEEecHHH
Confidence 444 566666 7787633 34466788899999988877543
No 494
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=42.36 E-value=70 Score=27.26 Aligned_cols=45 Identities=29% Similarity=0.384 Sum_probs=35.6
Q ss_pred cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecc
Q 034422 3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVAS 54 (95)
Q Consensus 3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~ 54 (95)
.++.++|++.|-|.-|-+.+++|.. +|++-+=+=++||+|.+.+.
T Consensus 196 ~l~d~kiv~~GAGAAgiaia~~l~~-------~g~~~~~i~~~D~~G~l~~~ 240 (432)
T COG0281 196 KLKDQKIVINGAGAAGIAIADLLVA-------AGVKEENIFVVDRKGLLYDG 240 (432)
T ss_pred CccceEEEEeCCcHHHHHHHHHHHH-------hCCCcccEEEEecCCcccCC
Confidence 3577899999999999999999876 23333446689999999964
No 495
>PRK07877 hypothetical protein; Provisional
Probab=42.13 E-value=23 Score=31.55 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=19.3
Q ss_pred ceeeCEEEEeeccccHHHHHHHHh
Q 034422 4 LKKIPSVLMGCGGVGRQLLQHIVS 27 (95)
Q Consensus 4 mk~I~v~LiG~G~VG~~Ll~~I~~ 27 (95)
.+.-+|+|+|+| +|+..+..+++
T Consensus 105 L~~~~V~IvG~G-lGs~~a~~Lar 127 (722)
T PRK07877 105 LGRLRIGVVGLS-VGHAIAHTLAA 127 (722)
T ss_pred HhcCCEEEEEec-HHHHHHHHHHH
Confidence 356689999997 99999988875
No 496
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=42.11 E-value=24 Score=23.70 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=24.3
Q ss_pred eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422 7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV 42 (95)
Q Consensus 7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv 42 (95)
.+++|+|.|.=++-+-.. -++.++++||.+.+.
T Consensus 53 peiliiGTG~~~~~~~~~---~~~~l~~~gI~vE~m 85 (109)
T cd00248 53 PDILLIGTGAEIAFLPRA---LRAALRAAGIGVEVM 85 (109)
T ss_pred CCEEEEcCCCCCCcCCHH---HHHHHHHcCCeEEEe
Confidence 689999999988543332 356778889888775
No 497
>PTZ00107 hexokinase; Provisional
Probab=42.08 E-value=31 Score=29.16 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=24.3
Q ss_pred eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422 14 CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD 46 (95)
Q Consensus 14 ~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD 46 (95)
-|.+|+-+.+++.+ .++++|++++|++|.|
T Consensus 189 ~~v~G~DV~~lL~~---Al~r~~l~v~v~AivN 218 (464)
T PTZ00107 189 DPVEGKDVGELLND---AFKRNNVPANVVAVLN 218 (464)
T ss_pred CCccCchHHHHHHH---HHHHcCCCceEEEEEE
Confidence 56799999988855 4455689999999998
No 498
>PRK12744 short chain dehydrogenase; Provisional
Probab=41.88 E-value=24 Score=25.46 Aligned_cols=20 Identities=10% Similarity=0.348 Sum_probs=16.3
Q ss_pred CEEEEe-eccccHHHHHHHHh
Q 034422 8 PSVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 8 ~v~LiG-~G~VG~~Ll~~I~~ 27 (95)
.++|.| .|++|+++++.+.+
T Consensus 10 ~vlItGa~~gIG~~~a~~l~~ 30 (257)
T PRK12744 10 VVLIAGGAKNLGGLIARDLAA 30 (257)
T ss_pred EEEEECCCchHHHHHHHHHHH
Confidence 466766 78999999999876
No 499
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=41.79 E-value=22 Score=28.58 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=18.5
Q ss_pred eCEEEEe-eccccHHHHHHHHh
Q 034422 7 IPSVLMG-CGGVGRQLLQHIVS 27 (95)
Q Consensus 7 I~v~LiG-~G~VG~~Ll~~I~~ 27 (95)
.+|.|+| .|.+|+.+++.+.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~ 120 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTL 120 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHH
Confidence 4579999 99999999999876
No 500
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=41.66 E-value=26 Score=24.78 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=18.8
Q ss_pred eeCEEEEeecccc-HHHHHHHHhh
Q 034422 6 KIPSVLMGCGGVG-RQLLQHIVSC 28 (95)
Q Consensus 6 ~I~v~LiG~G~VG-~~Ll~~I~~~ 28 (95)
.++|+++|-.+|| ++|++.+...
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~ 29 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADN 29 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999 5677777653
Done!