BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034423
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1SF86|ATG12_MEDTR Ubiquitin-like protein ATG12 OS=Medicago truncatula GN=ATG12 PE=3
SV=1
Length = 95
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 80/95 (84%), Positives = 88/95 (92%)
Query: 1 MAATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVN 60
MAA +SP+S RKVVVH RATG APILKQ+KFKI+G+DKFAKVI+FL R L RE+LFVYVN
Sbjct: 1 MAAAESPTSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRESLFVYVN 60
Query: 61 SAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
SAFSPNPDELVIDLYNNFGFDGKL+VNYACSMAWG
Sbjct: 61 SAFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 95
>sp|Q9LVK3|AT12B_ARATH Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana GN=ATG12B
PE=1 SV=1
Length = 94
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/93 (80%), Positives = 85/93 (91%)
Query: 3 ATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSA 62
AT+SP+S +K+VVH RATGGAPILKQ+KFK+SGSDKFA VI+FL R L ++LFVYVNSA
Sbjct: 2 ATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSA 61
Query: 63 FSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
FSPNPDE VIDLYNNFGFDGKL+VNYACSMAWG
Sbjct: 62 FSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94
>sp|Q8S924|AT12A_ARATH Ubiquitin-like protein ATG12A OS=Arabidopsis thaliana GN=ATG12A
PE=2 SV=1
Length = 96
Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 76/92 (82%), Positives = 83/92 (90%)
Query: 4 TDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAF 63
+ SPSS RKVVVH RATGGAPILKQ+KFKI G+DKFAKVI+FL R L ++LFVYVNSAF
Sbjct: 5 SSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYVNSAF 64
Query: 64 SPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
SPNPDE VIDLYNNFGFDGKL+VNYACSMAWG
Sbjct: 65 SPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96
>sp|Q69NP0|ATG12_ORYSJ Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. japonica
GN=ATG12 PE=3 SV=2
Length = 93
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/95 (67%), Positives = 80/95 (84%), Gaps = 2/95 (2%)
Query: 1 MAATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVN 60
MAA + +KVVVHFR+TG AP LKQ+KFKI G++KF K+I+FL R + ++T+F+YVN
Sbjct: 1 MAAV--AAEQKKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVN 58
Query: 61 SAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
SAFSPNPDEL+IDLYNNFG DG+L+VNYA SMAWG
Sbjct: 59 SAFSPNPDELIIDLYNNFGIDGQLVVNYASSMAWG 93
>sp|A2YAG8|ATG12_ORYSI Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. indica
GN=ATG12 PE=3 SV=2
Length = 93
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/95 (67%), Positives = 80/95 (84%), Gaps = 2/95 (2%)
Query: 1 MAATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVN 60
MAA + +KVVVHFR+TG AP LKQ+KFKI G++KF K+I+FL R + ++T+F+YVN
Sbjct: 1 MAAV--AAEQKKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVN 58
Query: 61 SAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
SAFSPNPDEL+IDLYNNFG DG+L+VNYA SMAWG
Sbjct: 59 SAFSPNPDELIIDLYNNFGIDGQLVVNYASSMAWG 93
>sp|P0CM28|ATG12_CRYNJ Ubiquitin-like protein ATG12 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=ATG12 PE=3 SV=1
Length = 105
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Query: 6 SPSSTRK-VVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG---RETLFVYVNS 61
SP+ + VVV F++ G API+K FK + KF VI FL + LG ++LF Y+N+
Sbjct: 12 SPAQAQPAVVVRFKSIGSAPIMKNNVFKATAGHKFQAVIMFLRQQLGMKKEDSLFTYINA 71
Query: 62 AFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
AF+P PD+ V LY +FG +G LIVNY+ + AWG
Sbjct: 72 AFAPAPDDTVGSLYKSFGTEGHLIVNYSNTQAWG 105
>sp|P0CM29|ATG12_CRYNB Ubiquitin-like protein ATG12 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=ATG12 PE=3
SV=1
Length = 105
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Query: 6 SPSSTRK-VVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG---RETLFVYVNS 61
SP+ + VVV F++ G API+K FK + KF VI FL + LG ++LF Y+N+
Sbjct: 12 SPAQAQPAVVVRFKSIGSAPIMKNNVFKATAGHKFQAVIMFLRQQLGMKKEDSLFTYINA 71
Query: 62 AFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
AF+P PD+ V LY +FG +G LIVNY+ + AWG
Sbjct: 72 AFAPAPDDTVGSLYKSFGTEGHLIVNYSNTQAWG 105
>sp|Q9US24|ATG12_SCHPO Ubiquitin-like protein ATG12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=atg12 PE=3 SV=1
Length = 132
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 60/90 (66%), Gaps = 3/90 (3%)
Query: 9 STRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG---RETLFVYVNSAFSP 65
R+V + F+A G P+L++ F I+ S +F KV FL + LG +L +YVNS+F+P
Sbjct: 43 ENRRVNLRFKAIGRTPLLRKTVFSINASQRFEKVTRFLKKELGLPMNSSLVLYVNSSFAP 102
Query: 66 NPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
+PDE+V +LY+NF D L++NY ++A+G
Sbjct: 103 SPDEIVGNLYDNFAIDSHLLINYCINVAFG 132
>sp|Q86CR6|ATG12_DICDI Ubiquitin-like protein atg12 OS=Dictyostelium discoideum GN=atg12
PE=3 SV=1
Length = 124
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Query: 8 SSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFS 64
+S K++V+F+ GGA LKQ KFKI + F VI+ L L E+LF+++N F
Sbjct: 34 TSESKIIVYFKNAGGAQPLKQKKFKIQANVSFQNVIDKLRGQLKLKSNESLFLFINQVFQ 93
Query: 65 PNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
P+PDE++ +LY F + +LI+NY+ MAWG
Sbjct: 94 PSPDEILGELYKCFSHNDQLIINYSLQMAWG 124
>sp|Q2TBJ5|ATG12_RAT Ubiquitin-like protein ATG12 OS=Rattus norvegicus GN=Atg12 PE=2
SV=1
Length = 141
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 5 DSPSSTRKVV-VHFRATGGAPILKQAKFKISGSDKFAKVIEFL---CRHLGRETLFVYVN 60
+ P T+K + + +A G PI+K K+ + + +I+F+ R L E LF+YVN
Sbjct: 47 EPPGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTVQALIDFIRKFLRLLASEQLFIYVN 106
Query: 61 SAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
+F+P+PD+ V LY FG DGKL+++Y S AWG
Sbjct: 107 QSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 141
>sp|O94817|ATG12_HUMAN Ubiquitin-like protein ATG12 OS=Homo sapiens GN=ATG12 PE=1 SV=1
Length = 140
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 5/97 (5%)
Query: 4 TDSPS--STRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVY 58
T+ P+ + +K+ + +A G PI+K K+ + + +I+F+ + L E LF+Y
Sbjct: 44 TEEPAGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIY 103
Query: 59 VNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
VN +F+P+PD+ V LY FG DGKL+++Y S AWG
Sbjct: 104 VNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 140
>sp|Q9CQY1|ATG12_MOUSE Ubiquitin-like protein ATG12 OS=Mus musculus GN=Atg12 PE=1 SV=1
Length = 141
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 5 DSPSSTRKVV-VHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVN 60
+ P T+K + + +A G PI+K K+ + + +I+F+ + L E LF+YVN
Sbjct: 47 EPPGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVN 106
Query: 61 SAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
+F+P+PD+ V LY FG DGKL+++Y S AWG
Sbjct: 107 QSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 141
>sp|Q5R7W1|ATG12_PONAB Ubiquitin-like protein ATG12 OS=Pongo abelii GN=ATG12 PE=2 SV=1
Length = 140
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 4 TDSPS--STRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVY 58
T+ P+ + +K+ + +A G PI+K K+ + + I+F+ + L E LF+Y
Sbjct: 44 TEEPAGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGPIDFIKKFLKLVASEQLFIY 103
Query: 59 VNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
VN +F+P+PD+ V LY FG DGKL+++Y S AWG
Sbjct: 104 VNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 140
>sp|Q3T0W7|ATG12_BOVIN Ubiquitin-like protein ATG12 OS=Bos taurus GN=ATG12 PE=2 SV=1
Length = 140
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 4 TDSP--SSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVY 58
T+ P + +K+ + +A G PI+K K+ + + + +F+ + L E LF+Y
Sbjct: 44 TEEPVGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLFDFIKKFLKLVASEQLFIY 103
Query: 59 VNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
VN +F+P+PD+ V LY FG DGKL+++Y S AWG
Sbjct: 104 VNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 140
>sp|Q2UMW6|ATG12_ASPOR Ubiquitin-like protein ATG12 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=atg12 PE=3 SV=1
Length = 176
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG-RET--LFVYVNSAFSPNPD 68
KV V F+ APILK FKIS S KF V++FL + L +ET +F YVNS F+P D
Sbjct: 90 KVTVRFQPLASAPILKNKVFKISASQKFETVVKFLRKKLDCKETDSVFCYVNSVFAPGLD 149
Query: 69 ELVIDLYNNFGFDGKLIVNYACSMAWG 95
E V L+ F D +LIV+Y+ + A+G
Sbjct: 150 EGVGGLWRCFKVDDQLIVSYSMTPAFG 176
>sp|A1CTJ1|ATG12_ASPCL Ubiquitin-like protein ATG12 OS=Aspergillus clavatus (strain ATCC
1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=atg12 PE=3 SV=2
Length = 173
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 10 TRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPN 66
T KV V F+ APILK FKIS S KF V++FL + L +++F YVNS F+P
Sbjct: 85 TGKVTVRFQPLPSAPILKNRVFKISASQKFETVVKFLRKKLDCKDTDSVFCYVNSVFAPG 144
Query: 67 PDELVIDLYNNFGFDGKLIVNYACSMAWG 95
DE V L+ F D +LIV+Y+ + A+G
Sbjct: 145 LDEGVGGLWRCFKVDDQLIVSYSMTPAFG 173
>sp|A4D9P4|ATG12_ASPFU Ubiquitin-like protein ATG12 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=atg12
PE=3 SV=1
Length = 174
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 10 TRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPN 66
T KV V F+ APILK FKIS S KF V++FL + L +++F YVNS F+P
Sbjct: 86 TGKVTVRFQPLPSAPILKNRVFKISASQKFETVVKFLRKKLDCKDTDSVFCYVNSVFAPG 145
Query: 67 PDELVIDLYNNFGFDGKLIVNYACSMAWG 95
DE V L+ F D +LIV+Y+ + A+G
Sbjct: 146 LDEGVGGLWRCFKTDDQLIVSYSMTPAFG 174
>sp|A1DMW6|ATG12_NEOFI Ubiquitin-like protein ATG12 OS=Neosartorya fischeri (strain ATCC
1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=atg12 PE=3
SV=2
Length = 174
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 10 TRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPN 66
T KV V F+ APILK FKIS S KF V++FL + L +++F YVNS F+P
Sbjct: 86 TGKVTVRFQPLPSAPILKNRVFKISASQKFETVVKFLRKKLDCKDTDSVFCYVNSVFAPG 145
Query: 67 PDELVIDLYNNFGFDGKLIVNYACSMAWG 95
DE V L+ F D +LIV+Y+ + A+G
Sbjct: 146 LDEGVGGLWRCFKTDDQLIVSYSMTPAFG 174
>sp|Q1E8C2|ATG12_COCIM Ubiquitin-like protein ATG12 OS=Coccidioides immitis (strain RS)
GN=ATG12 PE=3 SV=1
Length = 182
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG---RETLFVYVNSAFSPNPD 68
KV V F APIL+ FKIS S KF V+ FL + L +++F YVNS F+P D
Sbjct: 96 KVTVRFHPLPSAPILRNRVFKISASQKFETVVRFLRKKLDCSESDSVFCYVNSVFAPGLD 155
Query: 69 ELVIDLYNNFGFDGKLIVNYACSMAWG 95
E V L+ F D +LIV+Y+ + A+G
Sbjct: 156 ESVGGLWRCFKTDDQLIVSYSMTPAFG 182
>sp|A6RA46|ATG12_AJECN Ubiquitin-like protein ATG12 OS=Ajellomyces capsulata (strain NAm1
/ WU24) GN=ATG12 PE=3 SV=1
Length = 179
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPD 68
KV V F+ APIL+ FKIS S KF V++FL + L +++F YVNS F+P D
Sbjct: 93 KVTVRFQPLPSAPILRNRVFKISASQKFETVVKFLRKKLDCKDTDSVFCYVNSVFAPGLD 152
Query: 69 ELVIDLYNNFGFDGKLIVNYACSMAWG 95
E V L+ F D +LIV Y+ + A+G
Sbjct: 153 EGVGGLWRCFKTDDQLIVAYSMTPAFG 179
>sp|Q5BCH0|ATG12_EMENI Ubiquitin-like protein ATG12 OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=atg12
PE=3 SV=2
Length = 166
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 10 TRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG---RETLFVYVNSAFSPN 66
T KV V F+ APILK FKIS S KF V+ FL + L +++ YVNS F+P
Sbjct: 78 TGKVTVRFQPLASAPILKNRVFKISASQKFETVVNFLRKKLNCKDTDSVICYVNSVFAPR 137
Query: 67 PDELVIDLYNNFGFDGKLIVNYACSMAWG 95
DE V L+ F D +LIV Y+ + A+G
Sbjct: 138 LDEGVGGLWRCFKTDDQLIVAYSMTPAFG 166
>sp|A7KAM3|ATG12_PENCW Ubiquitin-like protein ATG12 OS=Penicillium chrysogenum (strain
ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=atg12 PE=3
SV=1
Length = 172
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPD 68
KV V F+ APILK FK+S S KF V++FL + L +++F YVNS F+P D
Sbjct: 86 KVTVRFQPLPSAPILKNRVFKVSASQKFETVVKFLRKKLDCKDTDSVFCYVNSVFAPGLD 145
Query: 69 ELVIDLYNNFGFDGKLIVNYACSMAWG 95
E + L+ F D +LIV Y+ + A+G
Sbjct: 146 EGMGGLWRCFKTDDQLIVAYSMTPAFG 172
>sp|Q6BU30|ATG12_DEBHA Ubiquitin-like protein ATG12 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=ATG12 PE=3 SV=1
Length = 153
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRET--LFVYVNSAFSPNPDE 69
KV + F+ G P + FKIS + + + +FL + L ++ +++Y+ ++F PNPDE
Sbjct: 68 KVTIRFQPIGSTPSINPRVFKISSNQSISTISKFLIKRLKIKSNLIYLYIQNSFQPNPDE 127
Query: 70 LVIDLYNNFGFDGKLIVNYACSMAWG 95
+ DLY+ F + +LI+NY S+A+G
Sbjct: 128 KLGDLYHLFKTNNELIINYCHSIAFG 153
>sp|A7TJM4|ATG12_VANPO Ubiquitin-like protein ATG12 OS=Vanderwaltozyma polyspora (strain
ATCC 22028 / DSM 70294) GN=ATG12 PE=3 SV=1
Length = 210
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 53/91 (58%)
Query: 5 DSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFS 64
D + K+ + F+ G P++ + IS F+ +I FL + L E +F Y+N++F+
Sbjct: 120 DIEKTVHKIQIKFQPIGSIPLITPSVCTISSQQTFSMIILFLKKRLKVEQVFCYINNSFA 179
Query: 65 PNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
PNP + + L++ F + +LIV+Y ++A+G
Sbjct: 180 PNPQQTIGSLWSQFKVNDELIVSYCGTVAFG 210
>sp|Q9VTU1|APG12_DROME Autophagy protein 12-like OS=Drosophila melanogaster GN=Atg12 PE=3
SV=3
Length = 111
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 1 MAATDSPSST------RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---G 51
AA + SST K+ + ATG PI+K+ + + + + F+ + L
Sbjct: 8 QAALSTSSSTPADKDGSKICILLNATGNVPIIKKRTWTVDPNKTVGWIQTFIHKFLKLDA 67
Query: 52 RETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
E +F+YVN F+P PD+++ +LY G +GKL++ Y + AWG
Sbjct: 68 SEQIFLYVNQTFAPAPDQIIKNLYECHGTNGKLVLYYCKNQAWG 111
>sp|Q6FMM7|ATG12_CANGA Ubiquitin-like protein ATG12 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ATG12
PE=3 SV=1
Length = 181
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 53/85 (62%)
Query: 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDEL 70
+KV++ F++ G + + +IS + F+ +I FL R L E + Y+N++F+P P +
Sbjct: 97 QKVMIKFQSIGSITSITPSVCQISTNKPFSVIISFLQRKLKMENIHCYINNSFAPVPSQN 156
Query: 71 VIDLYNNFGFDGKLIVNYACSMAWG 95
V DL+N F + +LIV+Y S+A+G
Sbjct: 157 VGDLWNQFKVNDELIVSYCGSVAFG 181
>sp|P38316|ATG12_YEAST Ubiquitin-like protein ATG12 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ATG12 PE=1 SV=1
Length = 186
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%)
Query: 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDEL 70
+K+ + F+ G LK + KIS S FA VI FL R L + ++ Y+N++F+P+P +
Sbjct: 102 QKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKMDHVYCYINNSFAPSPQQN 161
Query: 71 VIDLYNNFGFDGKLIVNYACSMAWG 95
+ +L+ F + +LIV+Y S+A+G
Sbjct: 162 IGELWMQFKTNDELIVSYCASVAFG 186
>sp|A6ZLF7|ATG12_YEAS7 Ubiquitin-like protein ATG12 OS=Saccharomyces cerevisiae (strain
YJM789) GN=ATG12 PE=3 SV=1
Length = 186
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%)
Query: 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDEL 70
+K+ + F+ G LK + KIS S FA VI FL R L + ++ Y+N++F+P+P +
Sbjct: 102 QKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKMDHVYCYINNSFAPSPQQN 161
Query: 71 VIDLYNNFGFDGKLIVNYACSMAWG 95
+ +L+ F + +LIV+Y S+A+G
Sbjct: 162 IGELWMQFKTNDELIVSYCASVAFG 186
>sp|Q51P78|ATG12_MAGO7 Ubiquitin-like protein ATG12 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=ATG12 PE=3 SV=1
Length = 181
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 58/90 (64%), Gaps = 5/90 (5%)
Query: 11 RKVVVHFRATGG-APILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPN 66
+KVVV F+ GG AP L++ KIS + +F V+ +L R L E++F+Y+NS F+P
Sbjct: 92 QKVVVRFKPVGGSAPALRKELCKISAAQRFEAVVAYLRRTLKVGNGESVFLYINSTFAPA 151
Query: 67 PDELVIDLYNNF-GFDGKLIVNYACSMAWG 95
DE+V +L+ F +G+L V+Y+ + A+G
Sbjct: 152 LDEIVGNLHRCFKDSNGQLNVSYSMTPAFG 181
>sp|Q6CUD5|ATG12_KLULA Ubiquitin-like protein ATG12 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=ATG12 PE=3 SV=1
Length = 189
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 50/84 (59%)
Query: 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELV 71
KV + + G P ++ +IS +F + FLC+ L R+ + Y+N+AF+P+ D+ +
Sbjct: 106 KVKIRLQPIGAIPQIQPRVCQISAHQQFLALTRFLCKRLKRKHIHCYINNAFAPSLDQNI 165
Query: 72 IDLYNNFGFDGKLIVNYACSMAWG 95
DL+ F + +LIV+Y ++A+G
Sbjct: 166 GDLWTQFKVNDELIVSYCETVAFG 189
>sp|A3GI31|ATG12_PICST Ubiquitin-like protein ATG12 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=ATG12 PE=3 SV=3
Length = 247
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 1 MAATDSP--SSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG-RETLFV 57
+ A SP +S K + F G P + F IS + + +I+FL + L ++ +++
Sbjct: 150 LKADSSPKSASEAKTTIRFVPIGSTPRINPLVFTISSNQTVSILIKFLAKKLKTKDHVYL 209
Query: 58 YVNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
Y+ ++F P PDE + DLYN F + +LIV+Y S+A+G
Sbjct: 210 YIQNSFQPTPDEKLSDLYNLFRTNNELIVSYCESVAFG 247
>sp|Q6BZZ1|ATG12_YARLI Ubiquitin-like protein ATG12 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=ATG12 PE=3 SV=1
Length = 205
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 12 KVVVHFRATGGA-PILKQAKFKISGSDKFAKVIEFLCRHL-----GRETLFVYVNSAFSP 65
K + FR GGA P LKQ+ +KI+ + +F V++FL + L +F Y+ S+F+P
Sbjct: 117 KCQLKFRPIGGATPSLKQSVYKIAETQQFGVVVKFLRKQLKIKNSQSSQIFCYI-SSFAP 175
Query: 66 NPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
DE V LYN + G+L ++Y + A+G
Sbjct: 176 GLDETVGSLYNRYAIRGELTISYCLNQAFG 205
>sp|A5E1F1|ATG12_LODEL Ubiquitin-like protein ATG12 OS=Lodderomyces elongisporus (strain
ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL
YB-4239) GN=ATG12 PE=3 SV=1
Length = 210
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 2 AATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG---RETLFVY 58
+ T SP KV + F+ G + FKIS V FL + L R+ L +Y
Sbjct: 117 STTKSP---EKVTIRFQPIGSTTAIHPKVFKISSVQSILTVNRFLSQKLKNNERQPLHLY 173
Query: 59 VNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
+ ++F P+PDE V DLY F + +LI++Y ++A+G
Sbjct: 174 IQNSFLPSPDERVGDLYALFATNHELIISYCNTIAFG 210
>sp|Q0UNW1|ATG12_PHANO Ubiquitin-like protein ATG12 OS=Phaeosphaeria nodorum (strain SN15
/ ATCC MYA-4574 / FGSC 10173) GN=ATG12 PE=3 SV=1
Length = 130
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG---RETLFVYVNSAFSPNP 67
+K+ V G AP L Q FK+S + +F ++ FL + LG E++F YV S F+P
Sbjct: 47 QKITVRLHPIGSAPALTQRVFKLSTNQRFDTIVRFLRKRLGVKEHESVFCYVGSVFAPGL 106
Query: 68 DELVIDLYNNFGFDGKLIVNYACSMAWG 95
DE V L++ +L+V YA + A+G
Sbjct: 107 DEGVGGLWSG----EELVVGYAMAPAFG 130
>sp|Q5AKU4|ATG12_CANAL Ubiquitin-like protein ATG12 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=ATG12 PE=3 SV=1
Length = 164
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG-RETLFVYVNSAFSPNPDEL 70
K+++ F G P ++ FKIS + + + FLC+ L + L +Y+ ++F P PDE
Sbjct: 80 KIMIRFVPIGSTPSIQPRVFKISATQTVSTLNRFLCKKLKFKGVLNLYIQNSFMPLPDEQ 139
Query: 71 VIDLYNNFGFDGKLIVNYACSMAWG 95
+ LY F + +LI++Y ++A+G
Sbjct: 140 IGSLYGLFKTNNELIISYCNTIAFG 164
>sp|A7EAE5|ATG12_SCLS1 Ubiquitin-like protein ATG12 OS=Sclerotinia sclerotiorum (strain
ATCC 18683 / 1980 / Ss-1) GN=atg12 PE=3 SV=2
Length = 120
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 11/96 (11%)
Query: 10 TRKVVVHFRATGGAPILKQAKFKISGSD-KFAKVIEFLCR--HLGR-----ETLFVYVNS 61
T K+ V F+ G APIL++ KIS S +F V+ +L R L R +++F+YVNS
Sbjct: 26 TAKITVRFQPIGSAPILQRPVSKISSSQQRFETVVAYLRRVLKLDRKGGEGDSVFLYVNS 85
Query: 62 AFSPNPDELVIDLYNNFGFDGK--LIVNYACSMAWG 95
F+P DE+V +L+ F D K LIV Y+ + A+G
Sbjct: 86 CFAPALDEVVGNLHRCFK-DSKDQLIVTYSMTPAFG 120
>sp|Q2GSG9|ATG12_CHAGB Ubiquitin-like protein ATG12 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=ATG12 PE=3 SV=2
Length = 150
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG---RETLFVYVNSAFSPNP 67
KVVV FR G AP +++ K+ + KF V+ +L + L + +F+Y+N+ F+P
Sbjct: 62 EKVVVRFRPVGSAPAIRRDLVKVISTHKFDSVVAYLRKMLKVPETDGVFLYINNTFAPAL 121
Query: 68 DELVIDLYNNF-GFDGKLIVNYACSMAWG 95
DE+V +L+ F LIV+Y+ S A+G
Sbjct: 122 DEVVGNLWRCFKDSSDHLIVSYSMSPAFG 150
>sp|Q7S083|ATG12_NEUCR Ubiquitin-like protein ATG12 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=atg-12 PE=3 SV=1
Length = 157
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG---RETLFVYVNSAFSPNP 67
KVV+ F+ G AP L++ + K+ + F V+ +L + L +++F+YVNS F+P
Sbjct: 69 EKVVIRFKPVGSAPALRREQVKVLSTHSFETVVAYLRKTLKVQETDSVFLYVNSVFAPAL 128
Query: 68 DELVIDLYNNF-GFDGKLIVNYACSMAWG 95
DE+V +L+ F +L V+Y+ + ++G
Sbjct: 129 DEVVGNLWRCFKDSTNQLNVSYSMTPSFG 157
>sp|A5DK05|ATG12_PICGU Ubiquitin-like protein ATG12 OS=Meyerozyma guilliermondii (strain
ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 /
NRRL Y-324) GN=ATG12 PE=3 SV=2
Length = 213
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 4 TDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNS 61
T P K+ + G + ++S A ++ F+ + L +++++Y+++
Sbjct: 120 TIKPLPATKITIRLVPIGSTRAITPKVLQVSSDQTVAVLMRFIAKKLRISTDSVYMYIHN 179
Query: 62 AFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
F P PDE + DLY+ F + +LI NY ++A+G
Sbjct: 180 TFQPTPDERLGDLYDQFRTNQELIFNYCNTVAFG 213
>sp|A7KAJ7|ATG12_PICAN Ubiquitin-like protein ATG12 OS=Pichia angusta GN=ATG12 PE=3 SV=1
Length = 167
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 6 SPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSP 65
S + K+ + F++ G + A FKIS S KF+ ++ FL LG++ ++ Y+N++ SP
Sbjct: 79 SKPTESKIQIRFKSIGSVDQVSPAVFKISKSSKFSSILRFLELKLGKK-VYCYLNNSVSP 137
Query: 66 NPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
NPDE + +LYN F +LIV+Y +A+G
Sbjct: 138 NPDEELENLYNIFRVGDELIVSYCNIVAFG 167
>sp|Q75EB4|ATG12_ASHGO Ubiquitin-like protein ATG12 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ATG12 PE=3
SV=1
Length = 189
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELV 71
KV + F+ G + +IS + F V+ FL R L +T+ YV+++F+P P + V
Sbjct: 106 KVAIRFQPIGSVGQVMPQVCRISSAQSFGAVLVFLRRRLRLDTVHCYVSNSFAPTPQQNV 165
Query: 72 IDLYNNFGFDGKLIVNYACSMAWG 95
L+ F + +L+V+Y ++A+G
Sbjct: 166 GQLWEQFKVNDELVVSYCATVAFG 189
>sp|A9KQI8|MURC_CLOPH UDP-N-acetylmuramate--L-alanine ligase OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=murC PE=3 SV=1
Length = 469
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 9/55 (16%)
Query: 10 TRKVVVHFRATGG------APILKQAKFKISGSD-KFAKVIEFLCRHLGRETLFV 57
T+ + VHF GG A +L F +SGSD K +K+++ L RHLG T+F+
Sbjct: 7 TKPIHVHFIGIGGISMSGLAELLHTKGFTVSGSDAKDSKIVDRL-RHLGI-TIFI 59
>sp|Q9P6P3|PPK15_SCHPO Serine/threonine-protein kinase ppk15 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ppk15 PE=1 SV=1
Length = 534
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 36 SDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFD 81
S KVI+F R+T++ Y+ S F +P E+++ L+ N G D
Sbjct: 269 SSPIVKVIDFGSACHERQTVYTYIQSRFYRSP-EVILGLHYNCGID 313
>sp|P41700|Y142_NPVAC Uncharacterized 55.4 kDa protein in IE0-IE1 intergenic region
OS=Autographa californica nuclear polyhedrosis virus
PE=4 SV=1
Length = 477
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 16 HFRATGGAPILK--QAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVID 73
H + I K + +F+ ++EF R + VY + F+ NP +++
Sbjct: 70 HLVGSTSTNIFKFVKPQFRFVCDRTTVDILEFDTRMYIKPGTPVYATNLFTSNPRKMMAF 129
Query: 74 LYNNFG--FDGKLIV---NYACSMA 93
LY FG F K+ V NY C +A
Sbjct: 130 LYAEFGKVFKNKIFVNINNYGCVLA 154
>sp|B3CNN4|ISPG_WOLPP 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Wolbachia
pipientis subsp. Culex pipiens (strain wPip) GN=ispG
PE=3 SV=1
Length = 426
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 34 SGSDKFAK-VIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIV 86
S + K+AK VIE H G E + + +NS +++ N GFDGK++V
Sbjct: 57 SSAQKYAKEVIELA--HAGSELVRIALNSEEVAKAIPYIVEEINKEGFDGKILV 108
>sp|O59584|SYW_PYRHO Tryptophan--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=trpS PE=1 SV=2
Length = 386
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 4 TDSPSSTRKVVVHFRATGGAPILKQAKFK 32
TDSP K V F TGG P LK+ + K
Sbjct: 266 TDSPEDVEKKVWKFTLTGGRPTLKEQREK 294
>sp|Q9UY11|SYW_PYRAB Tryptophan--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=trpS PE=3 SV=1
Length = 385
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 4 TDSPSSTRKVVVHFRATGGAPILKQAKFK 32
TDSP K V F TGG P LK+ + K
Sbjct: 266 TDSPEDVEKKVWKFALTGGRPTLKEQREK 294
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,368,590
Number of Sequences: 539616
Number of extensions: 1302041
Number of successful extensions: 2915
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2846
Number of HSP's gapped (non-prelim): 49
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)