Query 034423
Match_columns 95
No_of_seqs 101 out of 279
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 03:42:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3w1s_C Ubiquitin-like protein 100.0 7.4E-43 2.5E-47 230.1 9.9 88 8-95 4-91 (91)
2 4gdk_A Ubiquitin-like protein 100.0 1E-42 3.4E-47 229.2 10.6 86 10-95 3-91 (91)
3 1wz3_A Autophagy 12B, ATG12B, 100.0 2.3E-41 7.8E-46 224.7 8.8 91 5-95 6-96 (96)
4 3rui_B Autophagy-related prote 100.0 8.7E-34 3E-38 194.1 9.4 82 13-95 33-118 (118)
5 3h9d_A ATG8, microtubule-assoc 100.0 7E-34 2.4E-38 194.9 8.7 82 13-95 34-119 (119)
6 3m95_A Autophagy related prote 100.0 1.7E-33 5.8E-38 194.5 9.2 82 13-95 39-124 (125)
7 1eo6_A GATE-16, golgi-associat 100.0 1.5E-32 5E-37 187.3 9.8 85 10-95 26-116 (117)
8 2zjd_A Microtubule-associated 100.0 2.7E-32 9.3E-37 189.5 6.7 85 10-95 33-125 (130)
9 2r2q_A Gamma-aminobutyric acid 100.0 2E-29 7E-34 170.0 9.4 80 10-90 25-110 (110)
10 1uh6_A Ubiquitin-like 5; beta- 93.9 0.54 1.9E-05 30.4 8.4 80 3-89 19-100 (100)
11 2dyo_A Autophagy protein 5; ub 92.2 0.061 2.1E-06 41.0 2.1 51 38-89 231-285 (297)
12 2k8h_A Small ubiquitin protein 92.1 1.2 4.2E-05 29.0 8.2 62 7-74 21-85 (110)
13 4gdk_B Autophagy protein 5; pr 91.8 0.3 1E-05 36.9 5.4 53 36-89 212-270 (275)
14 3vqi_A ATG5; autophagy, E3-lik 91.4 0.15 5.1E-06 38.5 3.4 48 36-87 222-272 (274)
15 3v6c_B Ubiquitin; structural g 90.4 1.3 4.4E-05 26.8 6.6 69 10-87 15-87 (91)
16 1ip9_A BEM1 protein; ubiquitin 90.4 1.2 3.9E-05 28.5 6.4 49 6-59 6-54 (85)
17 1wx7_A Ubiquilin 3; ubiquitin- 89.7 2.5 8.5E-05 26.4 9.6 72 10-89 15-88 (106)
18 2jxx_A Nfatc2-interacting prot 89.6 2.3 7.8E-05 27.2 7.4 65 6-74 19-85 (97)
19 2eke_C Ubiquitin-like protein 88.3 1.2 4.1E-05 28.9 5.5 61 7-74 26-89 (106)
20 1wyw_B Ubiquitin-like protein 86.5 3.2 0.00011 25.6 6.5 71 11-88 20-92 (97)
21 3a4r_A Nfatc2-interacting prot 86.0 4 0.00014 24.5 7.4 59 11-74 6-67 (79)
22 3mtn_B UBA80, ubcep1, ubiquiti 84.6 3.7 0.00013 23.8 5.9 70 12-88 3-74 (85)
23 4hcn_B Polyubiquitin, ubiquiti 84.3 1.2 4.1E-05 27.6 3.7 68 11-87 21-92 (98)
24 2d07_B Ubiquitin-like protein 83.9 2 7E-05 26.7 4.7 60 10-74 15-76 (93)
25 2io0_B Small ubiquitin-related 83.5 2.2 7.4E-05 26.7 4.7 59 11-74 4-64 (91)
26 3dbh_I NEDD8; cell cycle, acti 83.5 5 0.00017 23.5 6.3 70 11-87 11-82 (88)
27 2uyz_B Small ubiquitin-related 82.6 5.2 0.00018 23.1 6.4 70 12-88 3-74 (79)
28 3rpf_C Molybdopterin convertin 82.5 1.3 4.4E-05 26.2 3.2 52 12-70 2-58 (74)
29 2io1_B Small ubiquitin-related 81.8 2.2 7.6E-05 26.7 4.3 59 11-74 6-66 (94)
30 1wx8_A Riken cDNA 4931431F19; 80.9 7.1 0.00024 23.6 6.7 68 10-87 15-86 (96)
31 1wz0_A Ubiquitin-like protein 79.8 3.5 0.00012 26.4 4.8 58 11-74 23-83 (104)
32 1wf9_A NPL4 family protein; be 78.2 2.7 9.4E-05 26.5 3.9 71 11-92 6-97 (107)
33 2dzi_A Ubiquitin-like protein 76.9 7.3 0.00025 22.3 5.3 68 11-87 6-77 (81)
34 1yqb_A Ubiquilin 3; structural 75.4 12 0.00041 23.2 9.8 72 10-89 20-93 (100)
35 1wh3_A 59 kDa 2'-5'-oligoadeny 74.1 11 0.00037 22.0 7.6 71 11-88 6-78 (87)
36 1ttn_A DC-UBP, dendritic cell- 74.1 13 0.00045 23.0 8.6 71 11-90 22-96 (106)
37 2qjl_A URM1, ubiquitin-related 71.7 2.3 7.9E-05 26.5 2.2 50 12-63 3-73 (99)
38 1q1o_A Cell division control p 70.4 9.2 0.00032 24.7 4.9 39 12-50 7-46 (98)
39 3k9o_B Ubiquitin, UBB+1; E2-25 69.4 15 0.00052 21.8 5.6 58 29-89 14-73 (96)
40 1wm3_A Ubiquitin-like protein 68.6 7.7 0.00026 22.6 4.0 56 13-74 2-60 (72)
41 3n3k_B Ubiquitin; hydrolase, p 68.4 7.3 0.00025 22.5 3.9 57 29-88 16-74 (85)
42 4dwf_A HLA-B-associated transc 68.1 16 0.00053 21.6 5.4 70 11-89 4-76 (90)
43 2wyq_A HHR23A, UV excision rep 67.9 15 0.00052 21.2 7.0 72 12-92 5-83 (85)
44 1vjk_A Molybdopterin convertin 67.4 5.1 0.00017 24.8 3.1 52 12-65 11-78 (98)
45 3kyd_D Small ubiquitin-related 66.5 7.9 0.00027 25.5 4.1 59 11-74 39-99 (115)
46 2hj8_A Interferon-induced 17 k 66.1 18 0.00062 21.4 9.1 71 12-89 4-76 (88)
47 1ndd_A NEDD8, protein (ubiquit 65.1 15 0.00051 20.4 4.7 54 30-88 14-71 (76)
48 1j8c_A Ubiquitin-like protein 65.0 22 0.00075 23.0 6.0 68 11-88 31-102 (125)
49 3u30_A Ubiquitin, linear DI-ub 63.5 16 0.00053 24.4 5.2 69 11-88 19-91 (172)
50 1wgk_A Riken cDNA 2900073H19 p 62.7 5.4 0.00019 25.9 2.7 49 12-62 13-81 (114)
51 2klc_A Ubiquilin-1; ubiquitin- 62.6 24 0.00082 21.7 7.0 69 11-89 24-96 (101)
52 1f0z_A THis protein; ubiquitin 62.4 9.4 0.00032 21.8 3.5 40 26-67 5-44 (66)
53 2l7r_A Ubiquitin-like protein 61.7 24 0.00081 21.3 6.4 67 12-87 19-87 (93)
54 2ojr_A Ubiquitin; lanthide-bin 61.0 27 0.00093 21.7 6.8 69 11-88 34-106 (111)
55 3a9j_A Ubiquitin; protein comp 60.8 19 0.00066 20.0 6.1 55 29-88 13-71 (76)
56 2bwf_A Ubiquitin-like protein 60.7 20 0.00068 20.1 6.8 66 13-88 5-74 (77)
57 3vdz_A Ubiquitin-40S ribosomal 59.8 16 0.00056 22.9 4.6 69 11-88 34-106 (111)
58 3phx_B Ubiquitin-like protein 59.3 22 0.00077 20.2 6.6 68 12-88 4-75 (79)
59 2l32_A Small archaeal modifier 58.4 12 0.0004 22.4 3.5 49 12-68 2-50 (74)
60 1v86_A DNA segment, CHR 7, way 57.9 29 0.00099 21.1 5.8 54 11-73 16-73 (95)
61 2diu_A KIAA0430 protein; struc 56.4 22 0.00074 22.7 4.7 38 51-91 7-56 (96)
62 2e5i_A Heterogeneous nuclear r 56.0 11 0.00037 24.6 3.2 30 51-80 22-51 (124)
63 1ryj_A Unknown; beta/alpha pro 54.9 26 0.0009 20.2 4.6 38 29-68 16-53 (70)
64 2xnq_A Nuclear polyadenylated 53.3 22 0.00076 21.1 4.2 32 57-90 25-66 (97)
65 3m62_B UV excision repair prot 52.9 22 0.00075 22.1 4.3 58 29-89 14-73 (106)
66 2kvi_A Nuclear polyadenylated 52.6 20 0.00067 21.1 3.8 34 56-91 12-55 (96)
67 3goe_A DNA repair protein RAD6 52.4 10 0.00035 23.9 2.5 47 12-62 9-58 (82)
68 1oey_A P67-PHOX, neutrophil cy 52.3 34 0.0012 21.2 5.0 66 12-86 7-78 (83)
69 2k9x_A Tburm1, uncharacterized 51.9 5.4 0.00019 25.8 1.2 38 11-50 5-48 (110)
70 4eew_A Large proline-rich prot 51.4 34 0.0012 19.9 5.2 58 11-73 16-75 (88)
71 1yx5_B Ubiquitin; proteasome, 48.6 41 0.0014 20.1 6.3 56 29-89 13-72 (98)
72 1j0g_A Hypothetical protein 18 47.1 52 0.0018 20.8 8.6 74 11-85 9-84 (92)
73 2jgn_A DBX, DDX3, ATP-dependen 47.0 48 0.0017 22.0 5.5 55 22-82 16-70 (185)
74 1x4c_A Splicing factor, argini 46.9 32 0.0011 20.6 4.3 33 56-90 17-59 (108)
75 1wjn_A Tubulin-folding protein 46.8 45 0.0016 20.0 6.4 47 12-59 9-59 (97)
76 4fbj_B NEDD8; effector-HOST ta 46.6 23 0.00077 21.0 3.4 56 30-88 14-71 (88)
77 3zzy_A Polypyrimidine tract-bi 46.1 18 0.00063 23.8 3.2 30 51-80 25-54 (130)
78 1vd2_A Protein kinase C, IOTA 46.0 52 0.0018 20.5 8.6 68 12-86 8-84 (89)
79 1v6e_A Cytoskeleton-associated 45.9 47 0.0016 20.0 5.8 44 12-58 7-54 (95)
80 2nlw_A Eukaryotic translation 45.8 34 0.0012 20.5 4.2 35 56-92 17-72 (105)
81 3pge_A SUMO-modified prolifera 44.3 38 0.0013 24.1 4.8 58 10-73 27-86 (200)
82 3beg_B Splicing factor, argini 44.0 35 0.0012 20.9 4.1 33 57-91 19-61 (115)
83 1t5i_A C_terminal domain of A 43.3 43 0.0015 21.8 4.8 51 23-80 3-53 (172)
84 3dwg_C 9.5 kDa culture filtrat 42.4 17 0.00058 21.9 2.4 52 12-66 2-70 (93)
85 1tyg_B YJBS; alpha beta barrel 42.3 17 0.00058 22.5 2.4 41 26-68 25-66 (87)
86 2hjv_A ATP-dependent RNA helic 41.8 65 0.0022 20.6 5.4 55 21-82 5-59 (163)
87 2kan_A Uncharacterized protein 41.0 58 0.002 19.6 6.8 67 12-88 15-86 (94)
88 1fm0_D Molybdopterin convertin 40.9 30 0.001 19.9 3.3 36 30-65 18-61 (81)
89 3tix_A Ubiquitin-like protein 40.3 27 0.00091 25.5 3.5 57 11-74 56-115 (207)
90 2l76_A Nfatc2-interacting prot 40.1 71 0.0024 20.3 5.6 57 11-74 20-79 (95)
91 2kd0_A LRR repeats and ubiquit 39.7 50 0.0017 19.4 4.3 54 30-88 25-82 (85)
92 2g1e_A Hypothetical protein TA 39.2 50 0.0017 19.3 4.2 52 13-66 2-67 (90)
93 2cqh_A IGF-II mRNA-binding pro 39.1 38 0.0013 19.5 3.6 12 69-80 23-34 (93)
94 1v5o_A 1700011N24RIK protein; 38.8 65 0.0022 19.5 7.5 56 30-88 25-83 (102)
95 2wbr_A GW182, gawky, LD47780P; 38.6 69 0.0024 19.9 4.9 37 54-91 7-53 (89)
96 2kmm_A Guanosine-3',5'-BIS(dip 38.0 27 0.00094 19.6 2.7 38 29-66 11-48 (73)
97 3d2w_A TAR DNA-binding protein 37.2 49 0.0017 19.3 3.9 34 57-91 14-58 (89)
98 2pjh_A Protein NPL4, nuclear p 37.1 15 0.00052 22.0 1.5 33 13-50 5-37 (80)
99 1sif_A Ubiquitin; hydrophobic 36.7 22 0.00075 21.1 2.2 55 29-88 22-80 (88)
100 1wf1_A RNA-binding protein RAL 36.6 53 0.0018 19.6 4.1 33 57-90 30-71 (110)
101 1wy8_A NP95-like ring finger p 35.9 64 0.0022 18.6 9.1 72 11-88 6-80 (89)
102 3fys_A Protein DEGV; fatty aci 35.7 64 0.0022 24.1 5.1 70 12-91 36-125 (315)
103 2krb_A Eukaryotic translation 35.4 29 0.00098 19.6 2.5 32 57-90 4-56 (81)
104 1x5p_A Negative elongation fac 35.1 57 0.002 18.9 4.0 32 57-90 18-58 (97)
105 3fdj_A DEGV family protein; GU 34.9 92 0.0031 22.6 5.8 68 12-91 3-86 (278)
106 2cu3_A Unknown function protei 34.5 32 0.0011 19.4 2.6 37 28-67 6-42 (64)
107 2dnq_A RNA-binding protein 4B; 34.1 67 0.0023 18.3 4.1 33 57-90 11-51 (90)
108 2ns5_A Partitioning-defective 34.1 86 0.0029 19.5 5.3 68 12-91 4-84 (85)
109 3b08_A Polyubiquitin-C, ubiqui 34.0 87 0.003 19.6 7.1 56 28-88 88-147 (152)
110 1rws_A Hypothetical protein PF 33.8 11 0.00036 22.4 0.4 44 21-66 15-58 (77)
111 2kk8_A Uncharacterized protein 33.3 75 0.0026 18.7 6.7 58 28-87 22-81 (84)
112 1t0y_A Tubulin folding cofacto 31.6 99 0.0034 19.5 6.0 44 12-58 6-53 (122)
113 2kj6_A Tubulin folding cofacto 31.5 93 0.0032 19.2 6.0 45 12-58 14-62 (97)
114 1sjq_A Polypyrimidine tract-bi 31.3 85 0.0029 19.6 4.5 37 53-90 15-61 (105)
115 2lxa_A Ubiquitin-like protein 31.3 88 0.003 18.8 4.4 39 34-73 21-62 (87)
116 1x4d_A Matrin 3; structural ge 31.3 17 0.00059 22.6 1.1 22 57-80 18-42 (102)
117 3ist_A Glutamate racemase; str 31.2 60 0.0021 23.6 4.2 36 41-76 19-54 (269)
118 1sjr_A Polypyrimidine tract-bi 30.8 59 0.002 22.2 3.9 30 51-80 43-72 (164)
119 2i1s_A Hypothetical protein; m 30.4 1.3E+02 0.0044 20.5 6.3 38 20-58 16-55 (188)
120 2bz2_A Negative elongation fac 30.2 58 0.002 20.3 3.6 35 55-91 40-83 (121)
121 3m63_B Ubiquitin domain-contai 29.8 41 0.0014 20.6 2.7 56 12-73 28-85 (101)
122 3po0_A Small archaeal modifier 29.0 57 0.0019 19.2 3.2 53 12-65 2-69 (89)
123 2faz_A Ubiquitin-like containi 29.0 80 0.0027 17.6 4.9 54 30-88 17-75 (78)
124 1uel_A HHR23B, UV excision rep 28.5 96 0.0033 18.4 5.7 55 30-89 14-75 (95)
125 1pqs_A Cell division control p 27.8 30 0.001 21.1 1.7 21 31-51 6-26 (77)
126 2div_A TRNA selenocysteine ass 27.7 90 0.0031 17.9 4.0 23 57-80 12-35 (99)
127 2eki_A DRG 1, developmentally- 27.5 1.2E+02 0.0041 19.1 6.4 51 9-59 8-58 (93)
128 4fxv_A ELAV-like protein 1; RN 27.4 41 0.0014 20.1 2.4 22 57-80 22-45 (99)
129 1wia_A Hypothetical ubiquitin- 27.0 1E+02 0.0034 18.1 6.3 69 11-89 6-77 (95)
130 2xs2_A Deleted in azoospermia- 26.7 87 0.003 18.2 3.8 23 56-80 11-35 (102)
131 2dt8_A DEGV family protein; fa 26.6 97 0.0033 22.5 4.7 47 35-91 41-91 (280)
132 2k5p_A THis protein, thiamine- 26.3 54 0.0019 19.5 2.7 40 27-68 6-48 (78)
133 2q5w_D Molybdopterin convertin 25.6 39 0.0013 19.2 2.0 37 30-66 19-58 (77)
134 3nyi_A FAT acid-binding protei 25.4 83 0.0028 23.1 4.1 71 11-91 3-95 (297)
135 3tuo_A DNA-binding protein SAT 25.1 64 0.0022 21.1 3.0 46 31-76 33-92 (105)
136 2l52_A Methanosarcina acetivor 24.9 24 0.00082 21.8 0.9 51 12-65 5-75 (99)
137 2jvo_A Nucleolar protein 3; nu 24.9 97 0.0033 18.6 3.8 33 56-90 33-74 (108)
138 2hvz_A Splicing factor, argini 24.2 1.1E+02 0.0038 17.6 4.2 10 70-79 16-25 (101)
139 2kc2_A Talin-1, F1; FERM, adhe 24.1 61 0.0021 21.5 2.9 39 23-61 18-58 (128)
140 3b1l_X E3 ubiquitin-protein li 29.0 17 0.00059 20.5 0.0 43 30-73 14-58 (76)
141 1fuk_A Eukaryotic initiation f 22.9 1.5E+02 0.0051 18.7 5.7 51 25-82 3-54 (165)
142 1wxv_A BAG-family molecular ch 22.7 1.2E+02 0.0042 17.6 7.1 68 12-88 7-83 (92)
143 1v5t_A 8430435I17RIK protein; 22.4 1.3E+02 0.0044 17.7 5.5 54 32-90 23-83 (90)
144 2kjr_A CG11242; UBL, ubiquitin 22.3 1.4E+02 0.0048 18.1 6.2 46 11-58 14-63 (95)
145 2cph_A RNA binding motif prote 22.2 1.2E+02 0.0042 17.5 4.3 21 57-79 18-40 (107)
146 4f25_A Polyadenylate-binding p 22.2 60 0.002 19.7 2.4 23 57-80 8-31 (115)
147 3r27_A HnRNP L, heterogeneous 22.1 94 0.0032 19.3 3.4 22 57-80 24-47 (100)
148 2al3_A TUG long isoform; TUG U 21.9 1.2E+02 0.004 19.1 3.8 39 23-61 16-56 (90)
149 4f6o_A Metacaspase-1; rossmann 21.8 2.7E+02 0.0091 21.2 6.5 53 39-91 77-138 (350)
150 1we7_A SF3A1 protein; structur 21.6 1.5E+02 0.0051 18.2 4.8 55 29-88 48-106 (115)
151 3ns6_A Eukaryotic translation 21.2 56 0.0019 19.3 2.1 23 56-80 8-38 (100)
152 3pl5_A SMU_165, putative uncha 21.1 1E+02 0.0034 23.1 3.9 47 36-91 78-126 (320)
153 3ivf_A Talin-1; FERM domain, c 20.6 89 0.003 23.1 3.5 23 29-51 15-37 (371)
154 1zpw_X Hypothetical protein TT 20.3 1.2E+02 0.0042 18.3 3.6 34 26-59 32-68 (90)
155 1we6_A Splicing factor, putati 20.2 1.6E+02 0.0054 17.9 6.0 71 12-88 27-102 (111)
156 1pzx_A Hypothetical protein AP 20.2 1.2E+02 0.0042 22.0 4.2 47 35-91 43-92 (289)
157 1gyx_A YDCE, B1461, hypothetic 20.1 61 0.0021 18.6 2.0 42 40-85 22-67 (76)
158 2kdi_A Ubiquitin, vacuolar pro 20.0 86 0.0029 19.6 2.9 56 29-89 22-81 (114)
No 1
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=7.4e-43 Score=230.12 Aligned_cols=88 Identities=35% Similarity=0.622 Sum_probs=74.4
Q ss_pred CCCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhcCCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEE
Q 034423 8 SSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVN 87 (95)
Q Consensus 8 ~~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~ 87 (95)
-.++||+|||+++|++|+|+|+||+||+++||++|+.+|||||+-++|||||||+|+|++|++||+||+|||+||||||+
T Consensus 4 ~~~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~ 83 (91)
T 3w1s_C 4 MNIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKMDHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVS 83 (91)
T ss_dssp --CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTCSCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEE
T ss_pred CCCCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCCceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEE
Confidence 34579999999999999999999999999999999999999997799999999999999999999999999999999999
Q ss_pred ecCCcccC
Q 034423 88 YACSMAWG 95 (95)
Q Consensus 88 Ys~~~afG 95 (95)
||+++|||
T Consensus 84 Ys~~~afG 91 (91)
T 3w1s_C 84 YCASVAFG 91 (91)
T ss_dssp EEC---CC
T ss_pred EeCccccC
Confidence 99999999
No 2
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=100.00 E-value=1e-42 Score=229.24 Aligned_cols=86 Identities=40% Similarity=0.806 Sum_probs=83.8
Q ss_pred CCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEE
Q 034423 10 TRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIV 86 (95)
Q Consensus 10 ~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi 86 (95)
.+||+|||+++|++|+|+|+||+||+++||++|+.+||||| ++++||+||||+|+|++|++||+||+||++||||||
T Consensus 3 ~~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv 82 (91)
T 4gdk_A 3 KKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVL 82 (91)
T ss_dssp -CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEE
T ss_pred CceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEE
Confidence 47999999999999999999999999999999999999999 789999999999999999999999999999999999
Q ss_pred EecCCcccC
Q 034423 87 NYACSMAWG 95 (95)
Q Consensus 87 ~Ys~~~afG 95 (95)
+||+++|||
T Consensus 83 ~Ys~~~afG 91 (91)
T 4gdk_A 83 HYCKSQAWG 91 (91)
T ss_dssp EEESSCCCC
T ss_pred EEeCccccC
Confidence 999999999
No 3
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=100.00 E-value=2.3e-41 Score=224.72 Aligned_cols=91 Identities=80% Similarity=1.330 Sum_probs=82.2
Q ss_pred CCCCCCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhcCCceEEEEEcCccCCCcccHHHHHHHHhCCCCEE
Q 034423 5 DSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKL 84 (95)
Q Consensus 5 ~~~~~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~L 84 (95)
.++..++||+|+|+++|++|+|+|+||+||+++||++|+.+|||||+-++|||||||+|+|++|++|++||+||||||||
T Consensus 6 ~~~~~~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~alFlyvn~~~~Ps~d~~m~~LY~~~kdDGfL 85 (96)
T 1wz3_A 6 ESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSAFSPNPDESVIDLYNNFGFDGKL 85 (96)
T ss_dssp ------CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCSSCEEEEEEEECCCTTSBHHHHHHHHCBTTBE
T ss_pred CCCCCCCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCceEEEEECCcccCChhhHHHHHHHHhCCCCEE
Confidence 33344689999999999999999999999999999999999999995559999999999999999999999999999999
Q ss_pred EEEecCCcccC
Q 034423 85 IVNYACSMAWG 95 (95)
Q Consensus 85 yi~Ys~~~afG 95 (95)
||+||+++|||
T Consensus 86 yi~Ys~~~afG 96 (96)
T 1wz3_A 86 VVNYACSMAWG 96 (96)
T ss_dssp EEEEESCSCC-
T ss_pred EEEEeCCcccC
Confidence 99999999999
No 4
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=100.00 E-value=8.7e-34 Score=194.12 Aligned_cols=82 Identities=18% Similarity=0.397 Sum_probs=76.4
Q ss_pred EEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEEe
Q 034423 13 VVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVNY 88 (95)
Q Consensus 13 V~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~Y 88 (95)
|.|.-.+.+++|+|+|+||+||+++||++|+.+||||| ++++||||||| ++|++|++||+||++||| ||||||+|
T Consensus 33 VIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~-~~p~~~~~m~~lY~~~kdeDGfLyv~Y 111 (118)
T 3rui_B 33 VICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVND-TLPPTAALMSAIYQEHKDKDGFLYVTY 111 (118)
T ss_dssp EEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTT-BCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECC-ccCCccchHHHHHHHcCCCCCeEEEEE
Confidence 34444567899999999999999999999999999999 78999999999 599999999999999999 99999999
Q ss_pred cCCcccC
Q 034423 89 ACSMAWG 95 (95)
Q Consensus 89 s~~~afG 95 (95)
|+++|||
T Consensus 112 s~~~~fG 118 (118)
T 3rui_B 112 SGENTFG 118 (118)
T ss_dssp EECCCBC
T ss_pred eccccCC
Confidence 9999999
No 5
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=100.00 E-value=7e-34 Score=194.90 Aligned_cols=82 Identities=20% Similarity=0.386 Sum_probs=74.9
Q ss_pred EEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEEe
Q 034423 13 VVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVNY 88 (95)
Q Consensus 13 V~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~Y 88 (95)
|+|.-.+.+++|+|+|+||+||+++||++|+.+||+|| ++++|||||||+ +|++|++||+||++||| ||||||+|
T Consensus 34 VIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~-~p~~~~~m~~lY~~~kd~DGfLyv~Y 112 (119)
T 3h9d_A 34 IICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDT-VLPSSAQMADIYSKYKDEDGFLYMKY 112 (119)
T ss_dssp EEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTE-ECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCc-CCCccchHHHHHHHcCCCCCeEEEEE
Confidence 44444567899999999999999999999999999998 899999999997 99999999999999998 99999999
Q ss_pred cCCcccC
Q 034423 89 ACSMAWG 95 (95)
Q Consensus 89 s~~~afG 95 (95)
|+++|||
T Consensus 113 s~e~~fG 119 (119)
T 3h9d_A 113 SGEATFG 119 (119)
T ss_dssp ECC-CC-
T ss_pred ecccccC
Confidence 9999999
No 6
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=100.00 E-value=1.7e-33 Score=194.52 Aligned_cols=82 Identities=17% Similarity=0.278 Sum_probs=75.7
Q ss_pred EEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEEe
Q 034423 13 VVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVNY 88 (95)
Q Consensus 13 V~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~Y 88 (95)
|+|.-.+.+++|+|+|+||+||+++||++|+.+||+|| +++|||||||| ++|++|++||+||++||| ||||||+|
T Consensus 39 VIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn-~lPs~s~~m~~lY~~~kdeDGfLY~~Y 117 (125)
T 3m95_A 39 VIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-VIPPTSATMGSLYQEHHDEDFFLYIAF 117 (125)
T ss_dssp EEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTT-BCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECC-ccCCccchHHHHHHHcCCCCCeEEEEe
Confidence 44444567889999999999999999999999999999 88999999999 599999999999999998 99999999
Q ss_pred cCCcccC
Q 034423 89 ACSMAWG 95 (95)
Q Consensus 89 s~~~afG 95 (95)
|+++|||
T Consensus 118 s~e~tfG 124 (125)
T 3m95_A 118 SDENVYG 124 (125)
T ss_dssp ESSSCC-
T ss_pred cCccccC
Confidence 9999999
No 7
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=99.98 E-value=1.5e-32 Score=187.33 Aligned_cols=85 Identities=18% Similarity=0.316 Sum_probs=78.6
Q ss_pred CCcEEEEeee--CCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCE
Q 034423 10 TRKVVVHFRA--TGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGK 83 (95)
Q Consensus 10 ~~KV~v~~~~--~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~ 83 (95)
+.+|-|.+.. .+++|+|+|+||+||.++||++|+.+||||| ++++||+||||+ +|++|++|++||+||+| |||
T Consensus 26 P~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~-~p~~~~~m~~LY~~~kd~DGf 104 (117)
T 1eo6_A 26 PDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKT-VPQSSLTMGQLYEKEKDEDGF 104 (117)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTB-CCCTTSBHHHHHHHHCCTTSC
T ss_pred CCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCE-ecCccchHHHHHHHhCCCCCE
Confidence 4577666665 4679999999999999999999999999999 889999999997 89999999999999999 999
Q ss_pred EEEEecCCcccC
Q 034423 84 LIVNYACSMAWG 95 (95)
Q Consensus 84 Lyi~Ys~~~afG 95 (95)
|||+||+++|||
T Consensus 105 Lyi~Ys~~~~fG 116 (117)
T 1eo6_A 105 LYVAYSGENTFG 116 (117)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEeCCccCC
Confidence 999999999999
No 8
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=99.97 E-value=2.7e-32 Score=189.45 Aligned_cols=85 Identities=20% Similarity=0.364 Sum_probs=78.6
Q ss_pred CCcEEEEeee--CCC-CCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEE-EEcCccCCCcccHHHHHHHHhCC-C
Q 034423 10 TRKVVVHFRA--TGG-APILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFV-YVNSAFSPNPDELVIDLYNNFGF-D 81 (95)
Q Consensus 10 ~~KV~v~~~~--~g~-~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFl-yVnn~f~P~~d~~v~~LY~~~k~-d 81 (95)
++||-|.+.. .++ +|+|+|+||+||+++||++|+.+||||| ++++||| ||||+ +|++|++||+||++||| |
T Consensus 33 P~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~-~p~~~~~m~~lY~~~kdeD 111 (130)
T 2zjd_A 33 PTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHS-MVSVSTPISEVYESEKDED 111 (130)
T ss_dssp TTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTE-ECCTTSBHHHHHHHHCCTT
T ss_pred CCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCc-cCCccchHHHHHHHhCCCC
Confidence 4577776654 466 9999999999999999999999999999 8899999 99997 99999999999999999 9
Q ss_pred CEEEEEecCCcccC
Q 034423 82 GKLIVNYACSMAWG 95 (95)
Q Consensus 82 G~Lyi~Ys~~~afG 95 (95)
|||||+||+++|||
T Consensus 112 GfLyv~Ys~e~tfG 125 (130)
T 2zjd_A 112 GFLYMVYASQETFG 125 (130)
T ss_dssp SCEEEEEEEHHHHH
T ss_pred CEEEEEEeCCcccC
Confidence 99999999999998
No 9
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=99.96 E-value=2e-29 Score=169.99 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=74.6
Q ss_pred CCcEEEEeeeCC--CCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCE
Q 034423 10 TRKVVVHFRATG--GAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGK 83 (95)
Q Consensus 10 ~~KV~v~~~~~g--~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~ 83 (95)
++||-|.+...+ ++|+|+|+||+||.++||++|+.+||+|| ++++||+||||+ +|++|++|++||++|+| |||
T Consensus 25 p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~-~p~~~~~m~~LY~~~kd~DGf 103 (110)
T 2r2q_A 25 PDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNT-IPPTSATMGQLYEDNHEEDYF 103 (110)
T ss_dssp TTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTB-CCCTTSBHHHHHHHHCCTTSC
T ss_pred CCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCE-ecCccChHHHHHHHcCCCCCE
Confidence 468888887764 79999999999999999999999999999 889999999997 89999999999999999 999
Q ss_pred EEEEecC
Q 034423 84 LIVNYAC 90 (95)
Q Consensus 84 Lyi~Ys~ 90 (95)
|||+||+
T Consensus 104 Lyi~Ys~ 110 (110)
T 2r2q_A 104 LYVAYSD 110 (110)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999985
No 10
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.94 E-value=0.54 Score=30.40 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=54.2
Q ss_pred CCCCCCCCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC
Q 034423 3 ATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF 80 (95)
Q Consensus 3 ~~~~~~~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~ 80 (95)
|+.++...+++.|.++...+ ++-.+.|.++.|+++|-..|..+- +.+..=|..++. ....+.++++ |.- ++
T Consensus 19 ~~~~~~~~~mm~I~VKtl~G----k~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk-~L~D~~TL~d-ygI-~~ 91 (100)
T 1uh6_A 19 PRGSEGAATMIEVVCNDRLG----KKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYT-IFKDHVSLGD-YEI-HD 91 (100)
T ss_dssp CCCCSSCCCEEEEEEECSSS----SCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTE-ECCSSCBHHH-HTC-CT
T ss_pred cccCCCCCCeEEEEEECCCC----CEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCE-ECCCCCCHHH-cCC-CC
Confidence 44455555679999887643 345588999999999999998887 545555556665 3455667775 221 23
Q ss_pred CCEEEEEec
Q 034423 81 DGKLIVNYA 89 (95)
Q Consensus 81 dG~Lyi~Ys 89 (95)
+..|.+.|.
T Consensus 92 gstlhL~~~ 100 (100)
T 1uh6_A 92 GMNLELYYQ 100 (100)
T ss_dssp TEEEEEECC
T ss_pred CCEEEEEeC
Confidence 568888883
No 11
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A
Probab=92.22 E-value=0.061 Score=41.02 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=36.6
Q ss_pred hHHHHH--HHHHhhc-CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEEec
Q 034423 38 KFAKVI--EFLCRHL-GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVNYA 89 (95)
Q Consensus 38 t~~~~~--~~LRk~L-~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~Ys 89 (95)
|+++++ ..+---+ ++.+..+.|++. .|+.|+.+..||++++- ||||||.=.
T Consensus 231 TLgd~L~~~~~lp~lf~~~~~~viihGI-~vpl~~pl~wl~~~l~~pDgFLhIvv~ 285 (297)
T 2dyo_A 231 TLKDIEGDILDVKEGINGNDVMVICQGI-EIPWHMLLYDLYSKLRSFDGFLYITLV 285 (297)
T ss_dssp BTGGGHHHHSCTTTC----CEEEEETTE-EECTTCBHHHHHHHHCCTTSCEEEEEE
T ss_pred CHHHHHhhhhhccccCCCCCCeEEEeCc-cCCCCCcHHHHHHHhcCCCcEEEEEEE
Confidence 666665 3221112 445578999995 78899999999999998 999999754
No 12
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=92.13 E-value=1.2 Score=29.00 Aligned_cols=62 Identities=19% Similarity=0.342 Sum_probs=45.2
Q ss_pred CCCCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--C-CceEEEEEcCccCCCcccHHHHH
Q 034423 7 PSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--G-RETLFVYVNSAFSPNPDELVIDL 74 (95)
Q Consensus 7 ~~~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~-~~slFlyVnn~f~P~~d~~v~~L 74 (95)
+...++|+|+++....- .-.|.|..+.++..++...+++. + ++--|+|=+. ...++.+.++|
T Consensus 21 ~~~~~~I~IkVk~~~g~----~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~--~L~~~~Tp~dl 85 (110)
T 2k8h_A 21 KEETALVAVKVVNADGA----EMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGT--PIDETKTPEEL 85 (110)
T ss_dssp CCCCCCEEEEEEETTSC----CEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSC--BCCSSSHHHHH
T ss_pred CCCCCeEEEEEECCCCC----EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCE--EcCCCCCHHHc
Confidence 33347899999874433 34799999999999999999888 3 4445555444 45677888887
No 13
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B
Probab=91.81 E-value=0.3 Score=36.85 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=39.4
Q ss_pred CchHHHHHHHHHhhc-CC----ceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEEec
Q 034423 36 SDKFAKVIEFLCRHL-GR----ETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVNYA 89 (95)
Q Consensus 36 ~~t~~~~~~~LRk~L-~~----~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~Ys 89 (95)
..|+++++.-+---+ ++ ....+.+++. .++.|+.+.+||++++- ||||||.=+
T Consensus 212 ~~TLg~~L~~~lP~lf~~~~~~~~~~viihGI-~~pl~~pl~~l~~~l~y~DgFLhI~v~ 270 (275)
T 4gdk_B 212 LHTLGDLLKEVCPSAIDPEDGEKKNQVMIHGI-EPMLETPLQWLSEHLSYPDNFLHISII 270 (275)
T ss_dssp BCBHHHHHHHHCGGGCC------CEEEEBTTB-CCCTTSBHHHHHHHSCCTTSCEEEEEE
T ss_pred cccHHHHHHHhcccccCCCcccccceEEEeCC-cCCCCCCHHHHHHhccCCCceEEEEEE
Confidence 358887766553333 22 3466788884 78999999999999999 999998644
No 14
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=91.41 E-value=0.15 Score=38.47 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=36.1
Q ss_pred CchHHHHHHHHHhhcCC--ceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEE
Q 034423 36 SDKFAKVIEFLCRHLGR--ETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVN 87 (95)
Q Consensus 36 ~~t~~~~~~~LRk~L~~--~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~ 87 (95)
..|+++++ +..|++ ....+.+++. .++.|+.+.+||+++.- ||||||.
T Consensus 222 ~~TLg~~L---~~~lp~l~~~~~~iihGi-~vp~~~pl~~l~~~~~y~DgFLhiv 272 (274)
T 3vqi_A 222 ELSVAELL---DSIKLSSDGVKSVIIQGI-DVSIEDNIFELYDIFASIDGFLYLV 272 (274)
T ss_dssp -CBHHHHH---HTTTCCC--CCEEEETTE-EEETTSBHHHHHHHHCCTTSCEEEE
T ss_pred cccHHHHH---HHhccccccceEEEEeCc-cCCCCCcHHHHHHHccCCCceEEEE
Confidence 56776664 444653 2344889994 78999999999999998 9999985
No 15
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=90.42 E-value=1.3 Score=26.83 Aligned_cols=69 Identities=9% Similarity=0.132 Sum_probs=44.8
Q ss_pred CCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEE
Q 034423 10 TRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLI 85 (95)
Q Consensus 10 ~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Ly 85 (95)
...+.|.++..++ +.-.+.|+.+.|++++...|.++. +.+..-|+.++. ....+.++++ |+. +..|+
T Consensus 15 ~~~m~i~Vk~~~g----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk-~L~D~~tL~~----~gi~~g~~i~ 85 (91)
T 3v6c_B 15 RGSMQIFVNTLTG----THITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLSD----YNIQKESTLH 85 (91)
T ss_dssp CCSEEEEEECTTS----CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTE-ECCTTCBTGG----GTCCTTCEEE
T ss_pred CCeEEEEEEeCCC----CEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCe-ECCCcCcHHH----CCCCCCCEEE
Confidence 3667777775443 233578999999999999998887 444444555765 3455556554 443 55665
Q ss_pred EE
Q 034423 86 VN 87 (95)
Q Consensus 86 i~ 87 (95)
+.
T Consensus 86 l~ 87 (91)
T 3v6c_B 86 LV 87 (91)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 16
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=90.39 E-value=1.2 Score=28.48 Aligned_cols=49 Identities=10% Similarity=0.198 Sum_probs=33.7
Q ss_pred CCCCCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhcCCceEEEEE
Q 034423 6 SPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYV 59 (95)
Q Consensus 6 ~~~~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L~~~slFlyV 59 (95)
..++..++.|.|-=.+++=.| .||.+.+++++-.-|+.||+.+..-+++
T Consensus 6 ~~pq~~~~KVK~yy~DDIiAI-----rvP~di~~~~L~dKi~~RLk~~~~~l~~ 54 (85)
T 1ip9_A 6 STSGLKTTKIKFYYKDDIFAL-----MLKGDTTYKELRSKIAPRIDTDNFKLQT 54 (85)
T ss_dssp CCCCCCCEEEEECBTTCCEEE-----EECSCCCHHHHHHHHHHHHTSSCEEEEE
T ss_pred CCCccCceEEEEEecCcEEEE-----ECCCCCCHHHHHHHHHHHhcccceEEEE
Confidence 334445555555555676444 7999999999999999999544444444
No 17
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=89.69 E-value=2.5 Score=26.39 Aligned_cols=72 Identities=6% Similarity=0.094 Sum_probs=47.3
Q ss_pred CCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEE
Q 034423 10 TRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVN 87 (95)
Q Consensus 10 ~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~ 87 (95)
...+.|.++..++ +..+.|+.+.|+++|...|.++. +.+..-|+.++.. ...+.+++++ .-+++..|+|.
T Consensus 15 ~~~m~I~Vk~~~g-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~-L~D~~tL~~~--gi~~g~~i~l~ 86 (106)
T 1wx7_A 15 PHLIKVTVKTPKD-----KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKI-LKDPDSLAQC--GVRDGLTVHLV 86 (106)
T ss_dssp SSEEEEEEECSSC-----EEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEE-CCTTSCHHHH--TCCTTEEEEEE
T ss_pred CceEEEEEEeCCC-----cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEE-CCCcCcHHHc--CCCCCCEEEEE
Confidence 4678888776553 23688999999999999998887 4455556667653 3556666553 11224567665
Q ss_pred ec
Q 034423 88 YA 89 (95)
Q Consensus 88 Ys 89 (95)
..
T Consensus 87 ~~ 88 (106)
T 1wx7_A 87 IK 88 (106)
T ss_dssp EC
T ss_pred Ec
Confidence 53
No 18
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=89.57 E-value=2.3 Score=27.22 Aligned_cols=65 Identities=11% Similarity=0.219 Sum_probs=45.5
Q ss_pred CCCCCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHH
Q 034423 6 SPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDL 74 (95)
Q Consensus 6 ~~~~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~L 74 (95)
.++..++|+|+++...+- +.-.|+|..+.+++.++..-+++. +..++-++.++. .-.++++..+|
T Consensus 19 ~~~~~~~I~LkV~~~dg~---~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~-rI~~~~TP~dL 85 (97)
T 2jxx_A 19 STETSQQLQLRVQGKEKH---QTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGT-KLSGRELPADL 85 (97)
T ss_dssp -CCSCSEEEEEEEESSSS---CEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTE-ECCSCSCHHHH
T ss_pred CCCCCCeEEEEEEcCCCC---EEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCE-EcCCCCCHHHc
Confidence 334447899999874332 244699999999999999999888 334554444654 45667788777
No 19
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=88.28 E-value=1.2 Score=28.90 Aligned_cols=61 Identities=16% Similarity=0.329 Sum_probs=42.3
Q ss_pred CCCCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCce-EEEEEcCccCCCcccHHHHH
Q 034423 7 PSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRET-LFVYVNSAFSPNPDELVIDL 74 (95)
Q Consensus 7 ~~~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~s-lFlyVnn~f~P~~d~~v~~L 74 (95)
++..++|+|+++. .+ +...|+|..+.++..++...+++. +..+ -|+| ++. .-.++.|.++|
T Consensus 26 ~~~~~~I~IkV~~-~g----~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F-dG~-rl~~~~Tp~dl 89 (106)
T 2eke_C 26 VKPETHINLKVSD-GS----SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DGI-RIQADQTPEDL 89 (106)
T ss_dssp CCCCSEEEEEEEC-SS----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTE-ECCTTCCTTTT
T ss_pred CCCCCeEEEEEec-CC----cEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE-CCe-EcCCCCCHHHc
Confidence 3344789999886 32 356799999999999999999888 3344 4555 543 23455566655
No 20
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=86.47 E-value=3.2 Score=25.60 Aligned_cols=71 Identities=11% Similarity=0.152 Sum_probs=47.4
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEEe
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNY 88 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~Y 88 (95)
..+.|.++...+ +...+.|..+.|++.+...|..+. +.+..-|+.++. ....+.+++++ .-+++..|.+..
T Consensus 20 ~~m~I~Vk~~~g----~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk-~L~d~~tl~dy--~i~~g~~I~l~~ 92 (97)
T 1wyw_B 20 EYIKLKVIGQDS----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQ-RIADNHTPKEL--GMEEEDVIEVYQ 92 (97)
T ss_dssp CEEEEEEECTTC----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTE-ECCTTCCHHHH--TCCTTCEEEEEE
T ss_pred CcEEEEEEeCCC----CEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCe-EcCCCCCHHHC--CCCCCCEEEEEE
Confidence 568888776433 234689999999999999998887 545555555665 34566677764 122355666654
No 21
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=85.97 E-value=4 Score=24.49 Aligned_cols=59 Identities=10% Similarity=0.222 Sum_probs=42.5
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--C-CceEEEEEcCccCCCcccHHHHH
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--G-RETLFVYVNSAFSPNPDELVIDL 74 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~-~~slFlyVnn~f~P~~d~~v~~L 74 (95)
++|+|+++...+- +.-.|.|..+.+++.++...+++. + ++--|+| ++. .-.++++.++|
T Consensus 6 ~~i~ikV~~~~g~---~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~-~l~~~~Tp~~l 67 (79)
T 3a4r_A 6 QELRLRVQGKEKH---QMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGT-KLSGKELPADL 67 (79)
T ss_dssp CCEEEEEECSSTT---CEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTE-ECCSCCCHHHH
T ss_pred CEEEEEEEeCCCC---EEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCE-EcCCCCCHHHc
Confidence 5899998863331 134799999999999999999988 3 4444555 553 35667788877
No 22
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=84.58 E-value=3.7 Score=23.78 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=44.1
Q ss_pred cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEEe
Q 034423 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNY 88 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~Y 88 (95)
++.|.++...+ +...+.|+.+.|++++...|.++. +.+..-|+.++. ....+.++++. .-+++..|++..
T Consensus 3 ~m~i~vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~-~L~d~~tL~~~--~i~~~~~l~l~~ 74 (85)
T 3mtn_B 3 HMQIFVKTLTG----KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLSDY--NIQKWSTLFLLL 74 (85)
T ss_dssp CEEEEEECTTS----CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTE-ECCTTSBTGGG--TCCTTCEEEEEC
T ss_pred eEEEEEEcCCC----CEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCE-ECCCCCCHHHc--CCCCCCEEEEEE
Confidence 34555554332 234578999999999999999888 555555666775 34455565542 112356777654
No 23
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=84.30 E-value=1.2 Score=27.55 Aligned_cols=68 Identities=12% Similarity=0.189 Sum_probs=43.2
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEE
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIV 86 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi 86 (95)
..+.|.++...+ +.-.+.|+.+.|+++|...|.++. +.+..-|+.++. ....+.++++ |+. +..|++
T Consensus 21 ~~m~I~Vk~~~g----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk-~L~D~~tL~~----~~i~~g~~i~l 91 (98)
T 4hcn_B 21 RPMQIFVKTLTG----KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK-QLEDGRTLSD----YNIQKESTLHL 91 (98)
T ss_dssp -CCEEEEEETTC----CEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTE-ECCTTCBSGG----GTCCTTEEEEE
T ss_pred CeEEEEEEeCCC----CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCE-ECCCCCcHHH----CCCCCCCEEEE
Confidence 567777765432 234578999999999999998887 444444556775 3455556554 443 445555
Q ss_pred E
Q 034423 87 N 87 (95)
Q Consensus 87 ~ 87 (95)
.
T Consensus 92 ~ 92 (98)
T 4hcn_B 92 V 92 (98)
T ss_dssp E
T ss_pred E
Confidence 4
No 24
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=83.93 E-value=2 Score=26.72 Aligned_cols=60 Identities=13% Similarity=0.269 Sum_probs=41.9
Q ss_pred CCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHH
Q 034423 10 TRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDL 74 (95)
Q Consensus 10 ~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~L 74 (95)
.++|+|+++...+ +.-.|.|..+.++..++...+++. +.+++-+..++. .-.++.+.++|
T Consensus 15 ~~~i~ikV~~~~g----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~-~l~~~~Tp~dl 76 (93)
T 2d07_B 15 NDHINLKVAGQDG----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ-PINETDTPAQL 76 (93)
T ss_dssp CCEEEEEEECTTS----CEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTE-ECCTTCCTTTT
T ss_pred CCeEEEEEECCCC----CEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCE-EcCCCCCHHHc
Confidence 3689999886333 234799999999999999999988 444555544553 34555566554
No 25
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=83.46 E-value=2.2 Score=26.69 Aligned_cols=59 Identities=14% Similarity=0.271 Sum_probs=41.2
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHH
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDL 74 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~L 74 (95)
++|+|+++...+ +.-.|+|.++.+++.++...+++. +.+++-+..++. .-.++++.++|
T Consensus 4 ~~i~ikVk~~~g----~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~-~l~~~~Tp~dl 64 (91)
T 2io0_B 4 DHINLKVAGQDG----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ-PINETDTPAQL 64 (91)
T ss_dssp CEEEEEEECTTS----CEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTE-ECCTTCCTTTT
T ss_pred CeEEEEEECCCC----CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCE-EcCCCCCHHHc
Confidence 578999886333 345799999999999999999988 434444444543 34556666655
No 26
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=83.45 E-value=5 Score=23.52 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=44.6
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEE
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVN 87 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~ 87 (95)
..+.|.++..++ +.-.+.|+.+.|++++...|..+. +.+..-|+.++. ....+.++++. .-+++..|++.
T Consensus 11 ~~m~i~vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~-~L~d~~tL~~~--~i~~~~~i~l~ 82 (88)
T 3dbh_I 11 GSMLIKVKTLTG----KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGK-QMNDEKTAADY--KILGGSVLHLV 82 (88)
T ss_dssp CCEEEEEECTTS----CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTE-ECCTTSBGGGG--TCCTTCEEEEC
T ss_pred CcEEEEEEcCCC----CEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCe-ECCCCCcHHHc--CCCCCCEEEEE
Confidence 456777765433 233578999999999999998887 444444555775 34456666653 12235566664
No 27
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=82.57 E-value=5.2 Score=23.12 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=44.4
Q ss_pred cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEEe
Q 034423 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNY 88 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~Y 88 (95)
.+.|.++...+ +.-.+.|..+.|++.+...+..+. +.+..-|+.++. ....+.+++++ .-+++..|++..
T Consensus 3 ~m~i~vk~~~g----~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~-~L~d~~tl~~~--~i~~~~~i~l~~ 74 (79)
T 2uyz_B 3 YIKLKVIGQDS----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQ-RIADNHTPKEL--GMEEEDVIEVYQ 74 (79)
T ss_dssp EEEEEEECTTC----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTE-ECCTTCCHHHH--TCCTTEEEEEEE
T ss_pred eEEEEEECCCC----CEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCE-EeCCCCCHHHc--CCCCCCEEEEEE
Confidence 45666665332 234689999999999999998887 444555555665 34566677764 122244566543
No 28
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=82.54 E-value=1.3 Score=26.23 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=35.6
Q ss_pred cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhcCC-----ceEEEEEcCccCCCcccH
Q 034423 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGR-----ETLFVYVNSAFSPNPDEL 70 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L~~-----~slFlyVnn~f~P~~d~~ 70 (95)
+|+|+|-+. +-. ..+.+ ...|+++++..|..+ +. +.+-+.||+.+++..|+.
T Consensus 2 ~v~V~~fa~--l~~---~~~e~-~~~tv~~ll~~L~~~-~~l~~~l~~~~vavN~~~v~~~~~~ 58 (74)
T 3rpf_C 2 MVEVRFFGP--IKE---ENFFI-KANDLKELRAILQEK-EGLKEWLGVCAIALNDHLIDNLNTP 58 (74)
T ss_dssp EEEEEECTT--CCC---CCEEE-ECSSHHHHHHHHHTC-TTTTTTTTTCEEEESSSEECCTTCC
T ss_pred EEEEEEEee--cce---eEEee-CCCcHHHHHHHHHHC-cCHHHHhhccEEEECCEEcCCCCcC
Confidence 577877542 222 34666 668999999999765 32 568899999875655543
No 29
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=81.80 E-value=2.2 Score=26.69 Aligned_cols=59 Identities=14% Similarity=0.271 Sum_probs=41.3
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHH
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDL 74 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~L 74 (95)
++|+|+++.-.+ +.-.|+|.++.+++.++...+++. +.+++-+..+.. .-.++++.+++
T Consensus 6 ~~i~ikVk~~~g----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~-~l~~~~Tp~dl 66 (94)
T 2io1_B 6 DHINLKVAGQDG----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ-PINETDTPAQL 66 (94)
T ss_dssp CEEEEEEECTTS----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTE-ECCTTCCTTTT
T ss_pred CeEEEEEECCCC----CEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCE-EcCCCCCHHHc
Confidence 589999886333 244799999999999999999988 444544444543 34555666654
No 30
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=80.89 E-value=7.1 Score=23.55 Aligned_cols=68 Identities=10% Similarity=0.216 Sum_probs=43.5
Q ss_pred CCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEE
Q 034423 10 TRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLI 85 (95)
Q Consensus 10 ~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Ly 85 (95)
...+.|.++..|. .-.+.|+.+.|++++...|..+. +.+..-|+.+... ...+.++++ |+. +..|+
T Consensus 15 ~~~m~i~Vk~~g~-----~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~-L~D~~tL~~----~gi~~g~~i~ 84 (96)
T 1wx8_A 15 SRIIRVSVKTPQD-----CHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKI-LRDQDILSQ----RGILDGSTVH 84 (96)
T ss_dssp SCEEEEEEECSSS-----EEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEE-CCTTSCHHH----HTCCTTEEEE
T ss_pred CCcEEEEEEECCe-----EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEE-CCCcCCHHH----CCCCCCCEEE
Confidence 3677777776532 33578999999999999998888 3333334446653 355666665 444 34555
Q ss_pred EE
Q 034423 86 VN 87 (95)
Q Consensus 86 i~ 87 (95)
+.
T Consensus 85 l~ 86 (96)
T 1wx8_A 85 VV 86 (96)
T ss_dssp CC
T ss_pred EE
Confidence 43
No 31
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=79.77 E-value=3.5 Score=26.37 Aligned_cols=58 Identities=17% Similarity=0.323 Sum_probs=41.1
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHH
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDL 74 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~L 74 (95)
++|+|+++...+ +.-.|.|..+.++..++...+++. +++--|+|=+.. ..++.+.++|
T Consensus 23 ~~I~IkVk~~~g----~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~--l~~~~Tp~dl 83 (104)
T 1wz0_A 23 DHINLKVAGQDG----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP--INETDTPAQL 83 (104)
T ss_dssp CCEEEEEECSSS----CEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSB--CCTTSCTTTT
T ss_pred CeEEEEEECCCC----CEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEE--cCCCCCHHHc
Confidence 689999886333 245799999999999999999988 344455554443 4555566554
No 32
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=78.18 E-value=2.7 Score=26.51 Aligned_cols=71 Identities=11% Similarity=0.239 Sum_probs=45.3
Q ss_pred CcEEEEeeeCCCCCceeeeeEEec-CCchHHHHHHHHHhhc--C--CceEEEEEcCcc-----------C---CCcccHH
Q 034423 11 RKVVVHFRATGGAPILKQAKFKIS-GSDKFAKVIEFLCRHL--G--RETLFVYVNSAF-----------S---PNPDELV 71 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~-~~~t~~~~~~~LRk~L--~--~~slFlyVnn~f-----------~---P~~d~~v 71 (95)
+++.||++...+ +....|. .+.|+++|..-|..++ + .+.|+ .++.. + ...+.++
T Consensus 6 ~~M~irvrs~~G-----~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~--~~~~~~~~k~~~~~~~l~~~l~d~~tL 78 (107)
T 1wf9_A 6 SGTMLRVRSRDG-----LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLS--TNRNLLLAKSPSDFLAFTDMADPNLRI 78 (107)
T ss_dssp CCEEEEEECSSC-----EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCB--SSGGGGTCCSHHHHTTCCSSCCTTCBG
T ss_pred CeEEEEEECCCC-----CEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEE--ECCccccccCccccccccccCCCCCCH
Confidence 357788876543 2246788 9999999999999988 3 44543 34321 1 2333344
Q ss_pred HHHHHHhCC--CCEEEEEecCCc
Q 034423 72 IDLYNNFGF--DGKLIVNYACSM 92 (95)
Q Consensus 72 ~~LY~~~k~--dG~Lyi~Ys~~~ 92 (95)
+ .|+. +..|++.|..+.
T Consensus 79 ~----~~gi~~G~~L~l~~~~~~ 97 (107)
T 1wf9_A 79 S----SLNLAHGSMVYLAYEGER 97 (107)
T ss_dssp G----GTCCCTTCEEECCCSSCC
T ss_pred H----HCCCCCCCEEEEEeCCCC
Confidence 4 4454 678999887653
No 33
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.86 E-value=7.3 Score=22.32 Aligned_cols=68 Identities=9% Similarity=0.196 Sum_probs=42.0
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEE
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIV 86 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi 86 (95)
..+.|.++..++ +...+.|+.+.|++++...|.++. +.+..-|+.++.. ...+.++++ |+. +..|++
T Consensus 6 ~~m~i~vk~~~g----~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~-L~d~~tL~~----~~i~~g~~i~l 76 (81)
T 2dzi_A 6 SGMQLTVKALQG----RECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKA-LADGKRLSD----YSIGPNSKLNL 76 (81)
T ss_dssp SSEEEEEEETTS----CEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEE-CCTTSBGGG----GTCCSSBCCEE
T ss_pred CcEEEEEEeCCC----CEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeE-CCCCCcHHH----cCCCCCCEEEE
Confidence 356666665332 233578999999999999998887 4444445556653 344555544 444 445555
Q ss_pred E
Q 034423 87 N 87 (95)
Q Consensus 87 ~ 87 (95)
.
T Consensus 77 ~ 77 (81)
T 2dzi_A 77 V 77 (81)
T ss_dssp E
T ss_pred E
Confidence 3
No 34
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=75.43 E-value=12 Score=23.15 Aligned_cols=72 Identities=6% Similarity=0.094 Sum_probs=48.0
Q ss_pred CCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEE
Q 034423 10 TRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVN 87 (95)
Q Consensus 10 ~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~ 87 (95)
...+.|.++..++ +..+.|+.+.|+++|...|.++. +.+..-|+.++.. ...+.++++. .-+++..|++.
T Consensus 20 ~~~m~I~Vk~~~g-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~-L~D~~tL~~y--gI~~gstI~l~ 91 (100)
T 1yqb_A 20 PHLIKVTVKTPKD-----KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKI-LKDPDSLAQC--GVRDGLTVHLV 91 (100)
T ss_dssp TTEEEEEEECSSC-----EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEE-CCTTSBHHHH--TCCTTCEEEEE
T ss_pred CCeEEEEEEcCCC-----cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEE-CCCcCcHHHC--CCCCCCEEEEE
Confidence 3567788777554 23688999999999999998887 5555556667753 3556666653 12235577776
Q ss_pred ec
Q 034423 88 YA 89 (95)
Q Consensus 88 Ys 89 (95)
..
T Consensus 92 ~r 93 (100)
T 1yqb_A 92 IK 93 (100)
T ss_dssp EC
T ss_pred Ec
Confidence 54
No 35
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=74.08 E-value=11 Score=22.04 Aligned_cols=71 Identities=7% Similarity=-0.029 Sum_probs=45.4
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEEe
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNY 88 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~Y 88 (95)
..+.|.++...+ +...+.|+.+.|++++...|.++. +.+..-|+.+.. ....+.++++. .-+++..|++..
T Consensus 6 ~~m~i~Vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk-~L~d~~tL~~~--~i~~g~~i~l~~ 78 (87)
T 1wh3_A 6 SGIQVFVKNPDG----GSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQ-VLQDWLGLGIY--GIQDSDTLILSK 78 (87)
T ss_dssp SSEEEEEEETTT----EEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTE-ECCSSSBHHHH--TCCTTEEEEEEE
T ss_pred CCEEEEEEcCCC----CEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCE-EccCCCCHHHC--CCCCCCEEEEEE
Confidence 356666665432 233578999999999999998887 555555566765 34556666653 112255666654
No 36
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=74.07 E-value=13 Score=23.03 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=45.8
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEE
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIV 86 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi 86 (95)
..+.|.++..++ +...+.|+.+.|+++|...|..+. +.+..-|+.++.. ...+.++++ |+. +..|++
T Consensus 22 ~~m~I~Vk~~~g----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~-L~D~~tL~~----ygI~~g~ti~l 92 (106)
T 1ttn_A 22 YECQLRLRLSTG----KDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRP-LTDKMKFEE----LKIPKDYVVQV 92 (106)
T ss_dssp CSEEEEEEETTT----EEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEE-CCTTSHHHH----CCCSSSCEEEE
T ss_pred CeEEEEEEcCCC----CEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEE-CCCCCcHHH----cCCCCCCEEEE
Confidence 457777776433 334578999999999999998887 3333344456653 345555554 454 667777
Q ss_pred EecC
Q 034423 87 NYAC 90 (95)
Q Consensus 87 ~Ys~ 90 (95)
....
T Consensus 93 v~~~ 96 (106)
T 1ttn_A 93 IVSQ 96 (106)
T ss_dssp ECCC
T ss_pred EEeC
Confidence 6643
No 37
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=71.69 E-value=2.3 Score=26.51 Aligned_cols=50 Identities=18% Similarity=0.299 Sum_probs=31.8
Q ss_pred cEEEEeeeCCCCCc-e-eeee--EEec--CCchHHHHHHHHHhhcCC--ce-------------EEEEEcCcc
Q 034423 12 KVVVHFRATGGAPI-L-KQAK--FKIS--GSDKFAKVIEFLCRHLGR--ET-------------LFVYVNSAF 63 (95)
Q Consensus 12 KV~v~~~~~g~~P~-L-~k~K--flV~--~~~t~~~~~~~LRk~L~~--~s-------------lFlyVnn~f 63 (95)
+|+|+|-+ .+-. + .+.. ..++ ...|+++++..|..+.+. .. +-++||+..
T Consensus 3 ~i~V~~fa--~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~ 73 (99)
T 2qjl_A 3 NVKVEFLG--GLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTD 73 (99)
T ss_dssp EEEEEEET--TGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEE
T ss_pred EEEEEEch--HHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEE
Confidence 57777754 2222 2 1333 3445 678999999999887632 22 348999874
No 38
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=70.37 E-value=9.2 Score=24.67 Aligned_cols=39 Identities=5% Similarity=0.070 Sum_probs=28.0
Q ss_pred cEEEEeeeCCCCCce-eeeeEEecCCchHHHHHHHHHhhc
Q 034423 12 KVVVHFRATGGAPIL-KQAKFKISGSDKFAKVIEFLCRHL 50 (95)
Q Consensus 12 KV~v~~~~~g~~P~L-~k~KflV~~~~t~~~~~~~LRk~L 50 (95)
||.|++...++-..+ +-....||.+.+|.+|+.-|++||
T Consensus 7 kVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl 46 (98)
T 1q1o_A 7 LFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKI 46 (98)
T ss_dssp EEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred EEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHH
Confidence 667776643322222 345678999999999999999999
No 39
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=69.40 E-value=15 Score=21.83 Aligned_cols=58 Identities=10% Similarity=0.070 Sum_probs=39.5
Q ss_pred eeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEEec
Q 034423 29 AKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYA 89 (95)
Q Consensus 29 ~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~Ys 89 (95)
-.+.|+.+.|+++|...|.++. +.+..-|+.++. ....+.+++++ .-+++..|++...
T Consensus 14 ~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~-~L~d~~tL~~~--~i~~~~~i~l~~r 73 (96)
T 3k9o_B 14 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLSDY--NIQKESTLHLVLR 73 (96)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTE-ECCTTSBTGGG--TCCTTCEEEEEEC
T ss_pred EEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCE-ECCCCCcHHHc--CCCCCCEEEEEEE
Confidence 3578999999999999998888 555666666775 34555566552 1223667777653
No 40
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=68.63 E-value=7.7 Score=22.59 Aligned_cols=56 Identities=18% Similarity=0.333 Sum_probs=37.0
Q ss_pred EEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHH
Q 034423 13 VVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDL 74 (95)
Q Consensus 13 V~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~L 74 (95)
|+|+++...+ +.-.|+|..+.+++.++...+++. +++--|+|=+.. -.++++.++|
T Consensus 2 i~lkV~~~~g----~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~--l~~~~Tp~~l 60 (72)
T 1wm3_A 2 INLKVAGQDG----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP--INETDTPAQL 60 (72)
T ss_dssp EEEEEECTTS----CEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEE--CCTTCCTTTT
T ss_pred EEEEEECCCC----CEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEE--cCCCCCHHHc
Confidence 4566654222 345799999999999999999888 344455554443 3555565544
No 41
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=68.40 E-value=7.3 Score=22.52 Aligned_cols=57 Identities=11% Similarity=0.048 Sum_probs=38.8
Q ss_pred eeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEEe
Q 034423 29 AKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNY 88 (95)
Q Consensus 29 ~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~Y 88 (95)
..+.|+.+.|++++...|.++. +.+..-|+.+.. ....+.++++. .-+++..|++..
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~-~L~d~~tL~~~--~i~~~~~i~l~~ 74 (85)
T 3n3k_B 16 IILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLSDY--NIHNHSALYLLL 74 (85)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBE-ECCTTCBTTTT--TCCTTCEEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCe-ECCCCCCHHHC--CCCCCCEEEEEE
Confidence 4578999999999999998887 556666666775 34555565542 122366777654
No 42
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=68.14 E-value=16 Score=21.55 Aligned_cols=70 Identities=7% Similarity=0.092 Sum_probs=44.0
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEE
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVN 87 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~ 87 (95)
..+.|.++...+ +...+.|+.+.|+++|...|..+. +.+..=|+.++. ....+.++++ |+. +..|++.
T Consensus 4 ~~m~i~Vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk-~L~d~~tL~~----~~i~g~~i~l~ 74 (90)
T 4dwf_A 4 DSLEVLVKTLDS----QTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGR-VLQDDKKLQE----YNVGGKVIHLV 74 (90)
T ss_dssp CEEEEEEEETTC----CEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTE-ECCTTSBGGG----GTCTTEEEEEE
T ss_pred cEEEEEEEcCCC----CEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCe-ECCCCCCHHH----cCCCCcEEEEE
Confidence 356666666432 233578999999999999998887 444444555665 3455666665 333 4456555
Q ss_pred ec
Q 034423 88 YA 89 (95)
Q Consensus 88 Ys 89 (95)
..
T Consensus 75 ~~ 76 (90)
T 4dwf_A 75 ER 76 (90)
T ss_dssp EC
T ss_pred ec
Confidence 43
No 43
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=67.88 E-value=15 Score=21.20 Aligned_cols=72 Identities=8% Similarity=0.074 Sum_probs=44.8
Q ss_pred cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhh-----cCCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEE
Q 034423 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRH-----LGRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKL 84 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~-----L~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~L 84 (95)
.+.|.++..++ +...+.|+.+.|++++-..|..+ ++.+..-|+.++. ....+.++++ |+. +..|
T Consensus 5 ~m~i~vk~~~g----~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk-~L~D~~tL~~----~~i~~g~~i 75 (85)
T 2wyq_A 5 AVTITLKTLQQ----QTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGK-ILSDDVPIRD----YRIDEKNFV 75 (85)
T ss_dssp CEEEEEEETTS----CEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTE-ECCTTSBGGG----GCCCTTSEE
T ss_pred eEEEEEEECCC----CEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCE-ECcCCCCHHH----cCCCCCCEE
Confidence 45666665432 12357899999999999999987 3445555556665 3345555544 454 6688
Q ss_pred EEEecCCc
Q 034423 85 IVNYACSM 92 (95)
Q Consensus 85 yi~Ys~~~ 92 (95)
++..+...
T Consensus 76 ~l~~~~~~ 83 (85)
T 2wyq_A 76 VVMVTKTK 83 (85)
T ss_dssp EEEEC---
T ss_pred EEEEcCCC
Confidence 88765543
No 44
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=67.44 E-value=5.1 Score=24.78 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=35.4
Q ss_pred cEEEEeeeCCCCCc---eeeeeEEecCCchHHHHHHHHHhhcC-------------CceEEEEEcCccCC
Q 034423 12 KVVVHFRATGGAPI---LKQAKFKISGSDKFAKVIEFLCRHLG-------------RETLFVYVNSAFSP 65 (95)
Q Consensus 12 KV~v~~~~~g~~P~---L~k~KflV~~~~t~~~~~~~LRk~L~-------------~~slFlyVnn~f~P 65 (95)
+|+|+|=+ .+-. -+...+.++...|+++++..|..+.+ .+.+-++||+..++
T Consensus 11 ~v~V~~FA--~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~ 78 (98)
T 1vjk_A 11 KVKVKYFA--RFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS 78 (98)
T ss_dssp EEEEEECT--HHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC
T ss_pred EEEEEEhH--HHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC
Confidence 57777644 2211 12345677888999999999977631 25677999998776
No 45
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=66.49 E-value=7.9 Score=25.47 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=39.6
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHH
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDL 74 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~L 74 (95)
++|+|+++.-.+-. -.|+|..+.++..++...++|. +..++=++.++. --.++++..+|
T Consensus 39 ~~I~LKV~~qdg~e----v~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~-rI~~~~TP~dL 99 (115)
T 3kyd_D 39 EYIKLKVIGQDSSE----IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQ-RIADNHTPKEL 99 (115)
T ss_dssp CEEEEEEECTTSCE----EEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTE-ECCTTCCTTTT
T ss_pred CeEEEEEEcCCCCE----EEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCe-ECCCCCCHHHc
Confidence 68888887643332 3799999999999999999888 444544444543 23444555444
No 46
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=66.11 E-value=18 Score=21.44 Aligned_cols=71 Identities=6% Similarity=0.113 Sum_probs=45.8
Q ss_pred cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEEec
Q 034423 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYA 89 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~Ys 89 (95)
.+.|.++...+ +.-.+.|+.+.|++++-..|..+. +.+..-|+.++. ....+.++++. .-+++..|++...
T Consensus 4 ~m~I~Vk~~~g----~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk-~L~D~~tL~~~--~I~~g~~i~l~~~ 76 (88)
T 2hj8_A 4 PLSILVRNNKG----RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGK-PLEDQLPLGEY--GLKPLSTVFMNLR 76 (88)
T ss_dssp EEEEEEEETTS----CEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSS-CCCTTSBHHHH--HCSTTCEEEEEEC
T ss_pred cEEEEEECCCC----CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCE-ECCCCCcHHHc--CCCCCCEEEEEEE
Confidence 45666665432 233578999999999999998887 444444555664 34556677654 2234667877664
No 47
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=65.13 E-value=15 Score=20.45 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=37.6
Q ss_pred eEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEEEe
Q 034423 30 KFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIVNY 88 (95)
Q Consensus 30 KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi~Y 88 (95)
.+.|+.+.|++++...|.++. +.+..-|+.++.. ...+.++++ |+. +..|++..
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~-L~d~~tL~~----~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ-MNDEKTAAD----YKILGGSVLHLVL 71 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEE-CCTTSBGGG----GTCCTTCEEEEEE
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEE-CCCCCcHHH----cCCCCCCEEEEEE
Confidence 578999999999999998887 5556666667753 344555543 444 55676654
No 48
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=64.99 E-value=22 Score=22.97 Aligned_cols=68 Identities=9% Similarity=0.224 Sum_probs=44.2
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEE
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIV 86 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi 86 (95)
..+.|.++..|. ...+.|+.+.|+++|...|.++. +.+..-|+.++..+ ..+.++++ |+. +..|+|
T Consensus 31 ~~m~I~Vk~~g~-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L-~D~~tL~d----ygI~~gstI~l 100 (125)
T 1j8c_A 31 KIIKVTVKTPKE-----KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKIL-KDQDTLIQ----HGIHDGLTVHL 100 (125)
T ss_dssp CCEEEEEECSSC-----EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEE-STTSCGGG----TTCSSSEEEEE
T ss_pred CcEEEEEEeCCe-----EEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEc-CCCCCHHH----cCCCCCCEEEE
Confidence 457777666432 34578999999999999998887 44555555566533 45555544 554 446666
Q ss_pred Ee
Q 034423 87 NY 88 (95)
Q Consensus 87 ~Y 88 (95)
..
T Consensus 101 v~ 102 (125)
T 1j8c_A 101 VI 102 (125)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 49
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=63.53 E-value=16 Score=24.36 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=44.3
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEE
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIV 86 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi 86 (95)
..+.|.++..++ +.-.+.|+.+.|++++...|..+. +.+..-|+.++. ....+.++++ |+. +..|++
T Consensus 19 ~~m~i~Vk~~~g----~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~-~L~d~~tL~~----~~i~~~~~l~l 89 (172)
T 3u30_A 19 SHMQIFVKTLTG----KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLSD----YNIQKESTLHL 89 (172)
T ss_dssp CCEEEEEEETTT----EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTE-ECCTTCBTGG----GTCCTTCEEEE
T ss_pred CcEEEEEEeCCC----CEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCc-cccccCCHhH----cCCcccceeee
Confidence 567777664332 234578999999999999998887 444444555664 3455666655 443 455655
Q ss_pred Ee
Q 034423 87 NY 88 (95)
Q Consensus 87 ~Y 88 (95)
.-
T Consensus 90 ~~ 91 (172)
T 3u30_A 90 VL 91 (172)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 50
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=62.73 E-value=5.4 Score=25.92 Aligned_cols=49 Identities=24% Similarity=0.409 Sum_probs=32.8
Q ss_pred cEEEEeeeCCCCCceee--ee--EEecC---CchHHHHHHHHHhhc---------CC----ceEEEEEcCc
Q 034423 12 KVVVHFRATGGAPILKQ--AK--FKISG---SDKFAKVIEFLCRHL---------GR----ETLFVYVNSA 62 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k--~K--flV~~---~~t~~~~~~~LRk~L---------~~----~slFlyVnn~ 62 (95)
+|+|+|-. .+-.+-. +. ..++. ..|+++++..|+++. .+ ..+.+|||..
T Consensus 13 ~v~V~~~~--~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~ 81 (114)
T 1wgk_A 13 CVKVEFGG--GAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDA 81 (114)
T ss_dssp EEEEEECT--TTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSS
T ss_pred EEEEEEch--HHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCe
Confidence 57787744 4444432 23 77774 369999999998775 11 2477999985
No 51
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=62.63 E-value=24 Score=21.67 Aligned_cols=69 Identities=7% Similarity=0.173 Sum_probs=45.3
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEE
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIV 86 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi 86 (95)
..+.|.++..|. ...+.|+.+.|++++-..|..+. +.+..-|+.++.. ...+.++++ |+. +..|++
T Consensus 24 ~~m~I~Vk~~g~-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~-L~D~~tL~~----~gI~~g~~I~l 93 (101)
T 2klc_A 24 KIMKVTVKTPKE-----KEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKI-LKDQDTLSQ----HGIHDGLTVHL 93 (101)
T ss_dssp CCEEEEEECSSC-----EEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEE-ECTTCCTGG----GTCCTTCEEEE
T ss_pred CeEEEEEEeCCc-----EEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEE-CCCcCcHHH----cCCCCCCEEEE
Confidence 456666666542 34678999999999999998877 5455555566653 345555544 454 556776
Q ss_pred Eec
Q 034423 87 NYA 89 (95)
Q Consensus 87 ~Ys 89 (95)
...
T Consensus 94 ~~~ 96 (101)
T 2klc_A 94 VIK 96 (101)
T ss_dssp EEC
T ss_pred EEc
Confidence 554
No 52
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=62.41 E-value=9.4 Score=21.81 Aligned_cols=40 Identities=10% Similarity=0.195 Sum_probs=30.1
Q ss_pred eeeeeEEecCCchHHHHHHHHHhhcCCceEEEEEcCccCCCc
Q 034423 26 LKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNP 67 (95)
Q Consensus 26 L~k~KflV~~~~t~~~~~~~LRk~L~~~slFlyVnn~f~P~~ 67 (95)
+..+.+.++...|+++++..|. ++.+.+-+.||+.++|..
T Consensus 5 vNg~~~~~~~~~tv~~ll~~l~--~~~~~v~vavN~~~v~~~ 44 (66)
T 1f0z_A 5 FNDQAMQCAAGQTVHELLEQLD--QRQAGAALAINQQIVPRE 44 (66)
T ss_dssp ESSCEECCCTTCCHHHHHHHHT--CCCSSEEEEETTEEECHH
T ss_pred ECCEEEEcCCCCcHHHHHHHcC--CCCCCEEEEECCEECCch
Confidence 3445567788899999999873 455677899999888754
No 53
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=61.71 E-value=24 Score=21.27 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=42.4
Q ss_pred cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEE
Q 034423 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVN 87 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~ 87 (95)
.+.|..+. | +...+.|+.+.|++++...|.++. +.+..-|+.++. ....+.++++. .-+++..|++.
T Consensus 19 ~m~I~Vk~-g-----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk-~L~D~~tL~~y--~I~~gstI~lv 87 (93)
T 2l7r_A 19 SMQLFVRA-Q-----ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGA-PLEDEATLGQC--GVEALTTLEVA 87 (93)
T ss_dssp -CEEEEES-S-----SEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTE-ECCTTSBHHHH--TCCSSCEEEEE
T ss_pred cEEEEEEC-C-----CEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCE-ECCCCCcHHHC--CCCCCCEEEEE
Confidence 45555554 3 344678999999999999998887 544555556665 33556666653 12235566664
No 54
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=60.97 E-value=27 Score=21.71 Aligned_cols=69 Identities=10% Similarity=0.133 Sum_probs=44.6
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEE
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIV 86 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi 86 (95)
..+.|.++...+ +...+.|+.+.|++++...|.++. +.+..-|+.++..+ ..+.++++ |+. +..|++
T Consensus 34 ~~m~I~Vk~~~g----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L-~D~~tL~~----~gI~~gs~I~l 104 (111)
T 2ojr_A 34 LAMQIFVKTLTG----KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSD----YNIQKESTLHL 104 (111)
T ss_dssp SCEEEEEECSSS----CEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEEC-CSSCBTTT----TTCCTTCEEEE
T ss_pred CeEEEEEEcCCC----CEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEEC-CCCCcHHH----cCCCCCCEEEE
Confidence 357777765432 233578999999999999998888 54555556676533 44555544 343 556666
Q ss_pred Ee
Q 034423 87 NY 88 (95)
Q Consensus 87 ~Y 88 (95)
..
T Consensus 105 ~~ 106 (111)
T 2ojr_A 105 VL 106 (111)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 55
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=60.83 E-value=19 Score=19.95 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=37.6
Q ss_pred eeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEEEe
Q 034423 29 AKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIVNY 88 (95)
Q Consensus 29 ~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi~Y 88 (95)
..+.|+.+.|++++...|.++. +.+..-|+.++..+ ..+.++++ |+. +..|++..
T Consensus 13 ~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L-~d~~tL~~----~~i~~g~~i~l~~ 71 (76)
T 3a9j_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSD----YNIQRESTLHLVL 71 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTCBTGG----GTCCTTCEEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeEC-CCCCcHHH----cCCCCCCEEEEEE
Confidence 3578999999999999998887 55566666677533 44555543 443 55676654
No 56
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=60.73 E-value=20 Score=20.11 Aligned_cols=66 Identities=6% Similarity=0.057 Sum_probs=42.2
Q ss_pred EEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEEEe
Q 034423 13 VVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIVNY 88 (95)
Q Consensus 13 V~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi~Y 88 (95)
+.|.++..| +...+.|+.+.|++++...|.++. +.+..=|+.++. ....+.++++ |+. +..|++.-
T Consensus 5 m~i~vk~~g-----~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk-~L~d~~tL~~----~~i~~g~~i~l~~ 74 (77)
T 2bwf_A 5 LNIHIKSGQ-----DKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGK-ILKDDQTVES----YHIQDGHSVHLVK 74 (77)
T ss_dssp EEEEEEETT-----EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTE-ECCTTSBTGG----GTCCTTCEEEEEE
T ss_pred EEEEEEECC-----EEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCe-EcCCCCCHHH----cCCCCCCEEEEEE
Confidence 445555433 234578999999999999998887 555555556665 3344555543 454 55777654
No 57
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=59.79 E-value=16 Score=22.85 Aligned_cols=69 Identities=10% Similarity=0.145 Sum_probs=44.2
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEE
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIV 86 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi 86 (95)
..+.|.++...+ +...+.|+.+.|+++|...|.++. +.+..-|+.++. ....+.++++ |+. +..|++
T Consensus 34 ~~m~I~Vk~~~G----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk-~L~D~~tL~~----~gI~~gs~I~l 104 (111)
T 3vdz_A 34 LAMQIFVKTLTG----KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLSD----YNIQKESTLHL 104 (111)
T ss_dssp GCEEEEEECSSS----CEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTE-ECCTTSBTTT----TTCCTTCEEEE
T ss_pred ccEEEEEEeCCC----CEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCE-ECCCCCcHHH----CCCCCCCEEEE
Confidence 356666665332 234578999999999999998888 555555666765 3445555554 343 556665
Q ss_pred Ee
Q 034423 87 NY 88 (95)
Q Consensus 87 ~Y 88 (95)
..
T Consensus 105 ~~ 106 (111)
T 3vdz_A 105 VL 106 (111)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 58
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=59.29 E-value=22 Score=20.23 Aligned_cols=68 Identities=7% Similarity=0.200 Sum_probs=43.4
Q ss_pred cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEEE
Q 034423 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIVN 87 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi~ 87 (95)
++.|.++..++ +...+.|+.+.|++++-..|..+. |.+..-|+.++. ....+.++++ |+. +..|++.
T Consensus 4 ~m~i~Vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~-~L~d~~tL~~----~~i~~~~~l~l~ 74 (79)
T 3phx_B 4 PLSILVRNNKG----RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGK-PLEDQLPLGE----YGLKPLSTVFMN 74 (79)
T ss_dssp CEEEEEECTTS----CEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTE-ECCTTSBGGG----GTCCTTCEEEEE
T ss_pred CEEEEEEeCCC----CEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCE-ECCCCCcHHH----CCCCCCCEEEEE
Confidence 45555554332 234578999999999999998877 555555666775 3445556654 443 5566665
Q ss_pred e
Q 034423 88 Y 88 (95)
Q Consensus 88 Y 88 (95)
-
T Consensus 75 ~ 75 (79)
T 3phx_B 75 L 75 (79)
T ss_dssp E
T ss_pred E
Confidence 3
No 59
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=58.39 E-value=12 Score=22.40 Aligned_cols=49 Identities=14% Similarity=0.292 Sum_probs=33.8
Q ss_pred cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhcCCceEEEEEcCccCCCcc
Q 034423 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPD 68 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L~~~slFlyVnn~f~P~~d 68 (95)
||+|++.. . +.....++...|+++++.-| .|+.+.+=+.+|+..+|..+
T Consensus 2 ~v~Vkl~g--~----~~~~~ev~~g~Tv~dLL~~L--gl~~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 2 NVTVEVVG--E----ETSEVAVDDDGTYADLVRAV--DLSPHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp EEEEECSS--S----SEEEEECSTTCSHHHHHHTT--CCCSSCCCEECCCCCCCTTS
T ss_pred EEEEEEeC--c----cceeEEcCCCCcHHHHHHHc--CCCcceEEEEECCEECCHHH
Confidence 67888863 2 34457899999999987744 33555556899998665443
No 60
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=57.93 E-value=29 Score=21.05 Aligned_cols=54 Identities=6% Similarity=0.008 Sum_probs=35.2
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--C--CceEEEEEcCccCCCcccHHHH
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--G--RETLFVYVNSAFSPNPDELVID 73 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~--~~slFlyVnn~f~P~~d~~v~~ 73 (95)
..+.|+++..+ +.-.+.|+.+.|+++|...|..+. + .+.|+ .+...+ .|.++++
T Consensus 16 ~~~~i~Vk~~g-----~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~--~~Gk~L--dd~tL~~ 73 (95)
T 1v86_A 16 ELVDLKIIWNK-----TKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM--YKGLVP--EDKTLRE 73 (95)
T ss_dssp CCEEEEEEETT-----EEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB--SSSBCC--SSSBHHH
T ss_pred ceEEEEEEECC-----EEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE--ECCeeC--CcCcHHH
Confidence 45777776433 234578999999999999998887 3 34443 455433 4445443
No 61
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.39 E-value=22 Score=22.74 Aligned_cols=38 Identities=32% Similarity=0.437 Sum_probs=25.4
Q ss_pred CCceEEEEEcCccCC-Cccc-----HHHHHHHHhC-C-----CCEEEEEecCC
Q 034423 51 GRETLFVYVNSAFSP-NPDE-----LVIDLYNNFG-F-----DGKLIVNYACS 91 (95)
Q Consensus 51 ~~~slFlyVnn~f~P-~~d~-----~v~~LY~~~k-~-----dG~Lyi~Ys~~ 91 (95)
|++++ +||+| +| ..++ .+.+|+..|+ . .|+=+|.|.+.
T Consensus 7 p~~T~-lYV~N--L~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~~~ 56 (96)
T 2diu_A 7 GCHTL-LYVYN--LPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFINQ 56 (96)
T ss_dssp CSSEE-EEEES--CCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEESSH
T ss_pred CcceE-EEEeC--CCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEECCH
Confidence 45555 89998 45 3332 2667888885 3 68888888754
No 62
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=56.03 E-value=11 Score=24.56 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=19.0
Q ss_pred CCceEEEEEcCccCCCcccHHHHHHHHhCC
Q 034423 51 GRETLFVYVNSAFSPNPDELVIDLYNNFGF 80 (95)
Q Consensus 51 ~~~slFlyVnn~f~P~~d~~v~~LY~~~k~ 80 (95)
++..|+|||.|---+...+.+.+++..|+.
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~ 51 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGK 51 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCC
Confidence 467799999983223444466666666664
No 63
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=54.86 E-value=26 Score=20.19 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=28.8
Q ss_pred eeEEecCCchHHHHHHHHHhhcCCceEEEEEcCccCCCcc
Q 034423 29 AKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPD 68 (95)
Q Consensus 29 ~KflV~~~~t~~~~~~~LRk~L~~~slFlyVnn~f~P~~d 68 (95)
..+.++...|+++++..|. ++.+.+-+-+|+.++|..+
T Consensus 16 ~~~~~~~~~tv~~Ll~~l~--~~~~~v~vavN~~~v~~~~ 53 (70)
T 1ryj_A 16 KILESGAPRRIKDVLGELE--IPIETVVVKKNGQIVIDEE 53 (70)
T ss_dssp EEEEESSCCBHHHHHHHTT--CCTTTEEEEETTEECCTTS
T ss_pred eeEECCCCCcHHHHHHHhC--CCCCCEEEEECCEECCCcc
Confidence 3467888899999988763 4556677999998887543
No 64
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=53.28 E-value=22 Score=21.15 Aligned_cols=32 Identities=9% Similarity=0.408 Sum_probs=19.5
Q ss_pred EEEcCccCCC---cccHHHHHHHHhCC-------CCEEEEEecC
Q 034423 57 VYVNSAFSPN---PDELVIDLYNNFGF-------DGKLIVNYAC 90 (95)
Q Consensus 57 lyVnn~f~P~---~d~~v~~LY~~~k~-------dG~Lyi~Ys~ 90 (95)
|||.| +|. .++.+.+++..|+. .|+=+|.|.+
T Consensus 25 l~V~n--Lp~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~ 66 (97)
T 2xnq_A 25 LFIGN--LPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDN 66 (97)
T ss_dssp EEEES--CCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESS
T ss_pred EEEeC--CCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECC
Confidence 67777 343 44456666666664 4666676654
No 65
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=52.91 E-value=22 Score=22.06 Aligned_cols=58 Identities=5% Similarity=0.079 Sum_probs=37.9
Q ss_pred eeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEEec
Q 034423 29 AKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYA 89 (95)
Q Consensus 29 ~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~Ys 89 (95)
-.+.|+.+.|+++|-..|..+. +.+..-|+.++. ....+.+++++ .-+++..|++.-+
T Consensus 14 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk-~L~D~~tL~~~--~i~~g~~i~lv~~ 73 (106)
T 3m62_B 14 VPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGK-VLQDSKTVSEC--GLKDGDQVVFMVS 73 (106)
T ss_dssp EEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTE-ECCTTSBTTTT--TCCTTCEEEEECC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCE-ECCCcCCHHHc--CCCCCCEEEEEEc
Confidence 3467899999999999998887 434444555665 34556666653 2233667777654
No 66
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=52.61 E-value=20 Score=21.13 Aligned_cols=34 Identities=9% Similarity=0.357 Sum_probs=21.4
Q ss_pred EEEEcCccCCC---cccHHHHHHHHhCC-------CCEEEEEecCC
Q 034423 56 FVYVNSAFSPN---PDELVIDLYNNFGF-------DGKLIVNYACS 91 (95)
Q Consensus 56 FlyVnn~f~P~---~d~~v~~LY~~~k~-------dG~Lyi~Ys~~ 91 (95)
=|||.| +|. .++.|.+++..|+. .|+=+|.|.+.
T Consensus 12 ~l~V~n--lp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~ 55 (96)
T 2kvi_A 12 RLFIGN--LPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNP 55 (96)
T ss_dssp EEEEES--STTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCH
T ss_pred EEEEeC--CCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCH
Confidence 367888 453 44466666666664 47777777653
No 67
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=52.42 E-value=10 Score=23.89 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=34.2
Q ss_pred cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCc
Q 034423 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSA 62 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~ 62 (95)
-|++.+++ +.-+ .-+|+|+.+.++.+++..-|++- .+.++.+-..+.
T Consensus 9 ~~~~~~~~-~~~~---dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGd 58 (82)
T 3goe_A 9 LITLLLRS-SKSE---DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGE 58 (82)
T ss_dssp EEEEEEEE-SSSC---CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTE
T ss_pred HHHHhhhc-cCCC---CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCc
Confidence 46666665 3333 34799999999999999988777 455787766654
No 68
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=52.31 E-value=34 Score=21.22 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=45.7
Q ss_pred cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCce-EEEEEc---CccCCCcccHHHHHHHHhCCCCEEE
Q 034423 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRET-LFVYVN---SAFSPNPDELVIDLYNNFGFDGKLI 85 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~s-lFlyVn---n~f~P~~d~~v~~LY~~~k~dG~Ly 85 (95)
||+|+|+ .. --..||.+.+++++..-|++|| +.+. ..-|=. +.+.+..|+.|.+.|++=++ |.|-
T Consensus 7 ~VKV~~~---~t-----vairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n-~~Lt 77 (83)
T 1oey_A 7 TLKVHYK---YT-----VVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKN-YCLT 77 (83)
T ss_dssp EEEEESS---SE-----EEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCBT-TEEE
T ss_pred EEEEEEE---EE-----EEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhccC-CcEE
Confidence 6666664 22 2347999999999999999999 2333 333432 34557888999999987664 3454
Q ss_pred E
Q 034423 86 V 86 (95)
Q Consensus 86 i 86 (95)
+
T Consensus 78 L 78 (83)
T 1oey_A 78 L 78 (83)
T ss_dssp E
T ss_pred E
Confidence 4
No 69
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=51.85 E-value=5.4 Score=25.84 Aligned_cols=38 Identities=21% Similarity=0.540 Sum_probs=25.5
Q ss_pred CcEEEEeeeCCCCCce--eeeeEEecC----CchHHHHHHHHHhhc
Q 034423 11 RKVVVHFRATGGAPIL--KQAKFKISG----SDKFAKVIEFLCRHL 50 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L--~k~KflV~~----~~t~~~~~~~LRk~L 50 (95)
-||+|+|-+ .+-.+ ++....+|. ..|+++++..|++++
T Consensus 5 m~v~V~f~g--~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~ 48 (110)
T 2k9x_A 5 NHITVQFAG--GCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY 48 (110)
T ss_dssp SCCEEEEES--SCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT
T ss_pred cEEEEEEEe--cHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc
Confidence 378888865 33222 233466673 359999999999986
No 70
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=51.39 E-value=34 Score=19.90 Aligned_cols=58 Identities=9% Similarity=0.112 Sum_probs=38.1
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHH
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVID 73 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~ 73 (95)
..+.|.++..++ +...+.|+.+.|++++-..|..+. +.+..-|+.++. ....+.++++
T Consensus 16 ~~m~i~Vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk-~L~D~~tL~~ 75 (88)
T 4eew_A 16 DSLEVLVKTLDS----QTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGR-VLQDDKKLQE 75 (88)
T ss_dssp CEEEEEEEETTS----CEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTE-ECCTTSBGGG
T ss_pred CeEEEEEEcCCC----CEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCE-ECCCCCcHHH
Confidence 456677666432 223578999999999999998887 444444555665 3455656654
No 71
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=48.63 E-value=41 Score=20.08 Aligned_cols=56 Identities=9% Similarity=0.092 Sum_probs=38.5
Q ss_pred eeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEEEec
Q 034423 29 AKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIVNYA 89 (95)
Q Consensus 29 ~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi~Ys 89 (95)
..+.|+.+.|++++...|.++. +.+..-|+.++..+ ..+.++++ |+. +..|++...
T Consensus 13 ~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L-~D~~tL~~----~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSD----YNIQKESTLHLVLR 72 (98)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEEC-CTTSBTGG----GTCCTTCEEEEEEC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEEC-CCCCCHHH----cCCCCCCEEEEEEe
Confidence 3578999999999999998887 55555566677533 44555544 444 667776654
No 72
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=47.06 E-value=52 Score=20.84 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=55.7
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEE
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLI 85 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Ly 85 (95)
.||+.+.--.+ -|.|--+...||++..|..+++|-.... +.++-=+--|.-.--+|.++-|++|=+|+.+=.|+
T Consensus 9 ~kVtFkItltS-dpklpfkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlI 84 (92)
T 1j0g_A 9 SKVSFKITLTS-DPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRII 84 (92)
T ss_dssp CEEEEEEEETT-STTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEE
T ss_pred ceEEEEEEEcc-CCCCCceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEec
Confidence 58887765544 5778888999999999999999998888 43333344454456788999999999998754443
No 73
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=47.02 E-value=48 Score=21.95 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=40.4
Q ss_pred CCCceeeeeEEecCCchHHHHHHHHHhhcCCceEEEEEcCccCCCcccHHHHHHHHhCCCC
Q 034423 22 GAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDG 82 (95)
Q Consensus 22 ~~P~L~k~KflV~~~~t~~~~~~~LRk~L~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG 82 (95)
..+.|++.-+.++.+..+..+..+|++.-+....-+|+|.. ..+..|++..+..|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~------~~~~~l~~~L~~~g 70 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETK------KGADSLEDFLYHEG 70 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCH------HHHHHHHHHHHHTT
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCH------HHHHHHHHHHHHcC
Confidence 34678888888999999999999887754667788999874 45666666555434
No 74
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.88 E-value=32 Score=20.64 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=19.0
Q ss_pred EEEEcCccCC--CcccHHHHHHHHhCC--------CCEEEEEecC
Q 034423 56 FVYVNSAFSP--NPDELVIDLYNNFGF--------DGKLIVNYAC 90 (95)
Q Consensus 56 FlyVnn~f~P--~~d~~v~~LY~~~k~--------dG~Lyi~Ys~ 90 (95)
=|||.| +| ..++.|.+++..|+. ||+=+|.|..
T Consensus 17 ~l~V~n--Lp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~ 59 (108)
T 1x4c_A 17 RVVVSG--LPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVR 59 (108)
T ss_dssp EEEEES--CCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESS
T ss_pred EEEEeC--CCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECC
Confidence 367777 33 233456666666653 3666666655
No 75
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=46.81 E-value=45 Score=20.05 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=30.7
Q ss_pred cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc----CCceEEEEE
Q 034423 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL----GRETLFVYV 59 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L----~~~slFlyV 59 (95)
-|+|.++..+.. .-+.....++.++|+++|-..|.+.. ..+.|+++-
T Consensus 9 ~v~l~I~~~~~~-~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 9 LLTLKIKCSNQP-ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp EEEEEEEESSCS-SSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred cEEEEEEecCCC-CCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 466766542111 11222346899999999999999888 456777664
No 76
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=46.55 E-value=23 Score=21.05 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=36.8
Q ss_pred eEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEEe
Q 034423 30 KFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNY 88 (95)
Q Consensus 30 KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~Y 88 (95)
.+.|+.+.|++++-..|..+. +.+..-|+.++. ....+.++++. .-+++..|++..
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk-~L~D~~tL~~~--~i~~g~~l~l~~ 71 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGK-QMNDEKTAADY--KILGGSVLHLVL 71 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTE-ECCTTSBTTTT--TCCTTCEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCe-ECCCCCcHHHc--CCCCCCEEEEEE
Confidence 468899999999999998887 444444555665 34556666653 122355676654
No 77
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=46.08 E-value=18 Score=23.81 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=20.9
Q ss_pred CCceEEEEEcCccCCCcccHHHHHHHHhCC
Q 034423 51 GRETLFVYVNSAFSPNPDELVIDLYNNFGF 80 (95)
Q Consensus 51 ~~~slFlyVnn~f~P~~d~~v~~LY~~~k~ 80 (95)
++.-|.+||.|-.-+-..+.+.+|+..|+.
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~ 54 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGT 54 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSC
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCC
Confidence 678899999994334555566666666664
No 78
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=46.02 E-value=52 Score=20.52 Aligned_cols=68 Identities=9% Similarity=0.193 Sum_probs=44.8
Q ss_pred cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhcC---CceEEE-EEcCc---cCCCcccHHHHHHHHhCC--CC
Q 034423 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG---RETLFV-YVNSA---FSPNPDELVIDLYNNFGF--DG 82 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L~---~~slFl-yVnn~---f~P~~d~~v~~LY~~~k~--dG 82 (95)
||++.| .|+ -..+.|+.+.++.++..-||.+++ .+.+=+ |++.. ..-+.|+.+..-.+.|.. |.
T Consensus 8 kvK~~~--~gd-----i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~ 80 (89)
T 1vd2_A 8 RVKAYY--RGD-----IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDS 80 (89)
T ss_dssp EEEEES--SSC-----EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCC
T ss_pred EEEEEe--CCe-----EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCC
Confidence 555555 455 346789999999999999999993 455555 77642 233778777765555543 44
Q ss_pred EEEE
Q 034423 83 KLIV 86 (95)
Q Consensus 83 ~Lyi 86 (95)
.|.|
T Consensus 81 ~l~i 84 (89)
T 1vd2_A 81 ELLI 84 (89)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 4444
No 79
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.90 E-value=47 Score=19.95 Aligned_cols=44 Identities=18% Similarity=0.051 Sum_probs=32.1
Q ss_pred cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc----CCceEEEE
Q 034423 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL----GRETLFVY 58 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L----~~~slFly 58 (95)
.|+|.+++.+. + ......|+.+.|++++-..|..+. ..+.|++.
T Consensus 7 ~v~l~I~~~~~-~--~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 7 GVMVFISSSLN-S--FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEEEETTS-S--SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred EEEEEEEECCC-C--eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 57888777433 3 345678999999999999998888 34566543
No 80
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=45.78 E-value=34 Score=20.49 Aligned_cols=35 Identities=20% Similarity=0.569 Sum_probs=21.1
Q ss_pred EEEEcCccCCCcc--------cHHHHHHHHhCC-------------CCEEEEEecCCc
Q 034423 56 FVYVNSAFSPNPD--------ELVIDLYNNFGF-------------DGKLIVNYACSM 92 (95)
Q Consensus 56 FlyVnn~f~P~~d--------~~v~~LY~~~k~-------------dG~Lyi~Ys~~~ 92 (95)
-|||+| +|... +.+.+++..|+. .|+=+|.|.+..
T Consensus 17 ~l~V~n--Lp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~ 72 (105)
T 2nlw_A 17 VIVVDN--VPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPA 72 (105)
T ss_dssp EEEEES--CCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSS
T ss_pred EEEEeC--CCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHH
Confidence 478888 45322 346666666653 267777776543
No 81
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=44.27 E-value=38 Score=24.13 Aligned_cols=58 Identities=12% Similarity=0.203 Sum_probs=38.6
Q ss_pred CCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHH
Q 034423 10 TRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVID 73 (95)
Q Consensus 10 ~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~ 73 (95)
.+.|+|+.+..| +.-.|+|..+.++..++...++|. +..++=+..++. --..++|..+
T Consensus 27 ~~~I~LkV~~~g-----~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~-rI~~~~TP~d 86 (200)
T 3pge_A 27 ETHINLKVSDGS-----SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI-RIQADQTPED 86 (200)
T ss_dssp CCCEEEEEECSS-----CEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTE-ECCTTCCTTT
T ss_pred CCeEEEEEecCC-----CEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCE-EcCCCCCHHH
Confidence 367888885422 356899999999999999999888 444444444443 2334444443
No 82
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=44.04 E-value=35 Score=20.92 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=22.7
Q ss_pred EEEcCccCC--CcccHHHHHHHHhCC--------CCEEEEEecCC
Q 034423 57 VYVNSAFSP--NPDELVIDLYNNFGF--------DGKLIVNYACS 91 (95)
Q Consensus 57 lyVnn~f~P--~~d~~v~~LY~~~k~--------dG~Lyi~Ys~~ 91 (95)
|||.| +| ..++.|.+++..|+. ||+=+|.|...
T Consensus 19 l~V~n--Lp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~ 61 (115)
T 3beg_B 19 VVVSG--LPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRK 61 (115)
T ss_dssp EEEEE--CCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSH
T ss_pred EEEeC--CCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCH
Confidence 77877 34 345578888888874 37778887653
No 83
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=43.31 E-value=43 Score=21.82 Aligned_cols=51 Identities=20% Similarity=0.166 Sum_probs=35.1
Q ss_pred CCceeeeeEEecCCchHHHHHHHHHhhcCCceEEEEEcCccCCCcccHHHHHHHHhCC
Q 034423 23 APILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGF 80 (95)
Q Consensus 23 ~P~L~k~KflV~~~~t~~~~~~~LRk~L~~~slFlyVnn~f~P~~d~~v~~LY~~~k~ 80 (95)
+..|++.-..++.+..+..+..+|++. +.+..-+|+|.. .....|++..+.
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~------~~~~~l~~~L~~ 53 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSV------QRCIALAQLLVE 53 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSH------HHHHHHHHHHHH
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCH------HHHHHHHHHHHh
Confidence 446777778888888898888888754 556778888774 455555555544
No 84
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=42.39 E-value=17 Score=21.86 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=32.7
Q ss_pred cEEEEeeeCCC--CCceeeeeEEecCCchHHHHHHHHHhhcC-------C----c----eEEEEEcCccCCC
Q 034423 12 KVVVHFRATGG--APILKQAKFKISGSDKFAKVIEFLCRHLG-------R----E----TLFVYVNSAFSPN 66 (95)
Q Consensus 12 KV~v~~~~~g~--~P~L~k~KflV~~~~t~~~~~~~LRk~L~-------~----~----slFlyVnn~f~P~ 66 (95)
+|+|+|-+.=. +. ....+. ....|+++++..|..+.+ . . .+-++||+..++.
T Consensus 2 ~v~V~~fa~lr~~~g--~~~~~~-~~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~ 70 (93)
T 3dwg_C 2 NVTVSIPTILRPHTG--GQKSVS-ASGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRF 70 (93)
T ss_dssp CEEEECCGGGGGGTT--TCSEEE-ECCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGG
T ss_pred EEEEEEeHHHHHHhC--CCeEEe-cCCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccC
Confidence 57777754111 11 112344 356799999999987753 1 1 4789999987664
No 85
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=42.32 E-value=17 Score=22.53 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=30.3
Q ss_pred eeeeeEEecCC-chHHHHHHHHHhhcCCceEEEEEcCccCCCcc
Q 034423 26 LKQAKFKISGS-DKFAKVIEFLCRHLGRETLFVYVNSAFSPNPD 68 (95)
Q Consensus 26 L~k~KflV~~~-~t~~~~~~~LRk~L~~~slFlyVnn~f~P~~d 68 (95)
++.+.+.++.. .|+++++..|. ++.+.+-+-||+.++|..+
T Consensus 25 vNGe~~el~~~~~Tv~dLL~~L~--~~~~~vaVavNg~iV~~~~ 66 (87)
T 1tyg_B 25 LNGKDVKWKKDTGTIQDLLASYQ--LENKIVIVERNKEIIGKER 66 (87)
T ss_dssp ETTEEECCSSSCCBHHHHHHHTT--CTTSCCEEEETTEEECGGG
T ss_pred ECCEEEECCCCCCcHHHHHHHhC--CCCCCEEEEECCEECChhh
Confidence 34455677787 89999998773 4556677999999888654
No 86
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=41.83 E-value=65 Score=20.57 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=38.3
Q ss_pred CCCCceeeeeEEecCCchHHHHHHHHHhhcCCceEEEEEcCccCCCcccHHHHHHHHhCCCC
Q 034423 21 GGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDG 82 (95)
Q Consensus 21 g~~P~L~k~KflV~~~~t~~~~~~~LRk~L~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG 82 (95)
...+.+++.-+.++.+..+..+..+|+.. +....-+|+|.. .....|++..+..|
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~------~~~~~l~~~L~~~~ 59 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTK------EHVNQLTDELDDLG 59 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSH------HHHHHHHHHHHHTT
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCH------HHHHHHHHHHHHcC
Confidence 34567888888888899999998888764 445677888764 45556665555433
No 87
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=41.00 E-value=58 Score=19.62 Aligned_cols=67 Identities=10% Similarity=0.149 Sum_probs=43.2
Q ss_pred cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcc-cHHHHHHHHhCC--CCEEEE
Q 034423 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPD-ELVIDLYNNFGF--DGKLIV 86 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d-~~v~~LY~~~k~--dG~Lyi 86 (95)
.+.|.++..++ ...+.|+.+.|+++|-..|..+. +.+..=|+.++.. ...+ .++++ |+. +..|++
T Consensus 15 ~~~I~Vk~~~~-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~-L~D~~~tL~~----ygI~~gstl~l 84 (94)
T 2kan_A 15 KIHVTVKFPSK-----QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIE-LADDYRNLNE----YGITEFSEIVV 84 (94)
T ss_dssp CEEEEEECSSC-----EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEE-ECCTTSBHHH----HTCCTTEEEEE
T ss_pred CEEEEEEcCCc-----EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEE-CCCCcccHHH----CCCCCCCEEEE
Confidence 46666665443 24578999999999999998887 5444555566653 3444 56655 343 556666
Q ss_pred Ee
Q 034423 87 NY 88 (95)
Q Consensus 87 ~Y 88 (95)
.-
T Consensus 85 v~ 86 (94)
T 2kan_A 85 FL 86 (94)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 88
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=40.88 E-value=30 Score=19.95 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=26.7
Q ss_pred eEEe-cCCchHHHHHHHHHhh-------cCCceEEEEEcCccCC
Q 034423 30 KFKI-SGSDKFAKVIEFLCRH-------LGRETLFVYVNSAFSP 65 (95)
Q Consensus 30 KflV-~~~~t~~~~~~~LRk~-------L~~~slFlyVnn~f~P 65 (95)
...+ +...|+++++..|..+ |+...+.+.||+.+++
T Consensus 18 ~~~~~~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~ 61 (81)
T 1fm0_D 18 ATEVAADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS 61 (81)
T ss_dssp EEEECSCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC
T ss_pred eEEEcCCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC
Confidence 3444 4667999999999766 4445678999998775
No 89
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=40.27 E-value=27 Score=25.46 Aligned_cols=57 Identities=16% Similarity=0.323 Sum_probs=39.1
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCce-EEEEEcCccCCCcccHHHHH
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRET-LFVYVNSAFSPNPDELVIDL 74 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~s-lFlyVnn~f~P~~d~~v~~L 74 (95)
++|+|+.+..| +...|+|..+.++..++...++|. +..+ -|+| +.. --..++|..+|
T Consensus 56 e~InLKVk~dG-----~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF-DGq-RI~~ddTPeDL 115 (207)
T 3tix_A 56 THINLKVSDGS-----SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY-DGI-EIQADQTPEDL 115 (207)
T ss_dssp CEEEEEEECSS-----CEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE-TTE-ECCSSCCTTTT
T ss_pred CcEEEEEecCC-----CEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE-CCe-ecCCCCCHHHc
Confidence 67898886433 456799999999999999998888 3334 4555 443 23345555444
No 90
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=40.12 E-value=71 Score=20.34 Aligned_cols=57 Identities=16% Similarity=0.324 Sum_probs=41.8
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHH
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDL 74 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~L 74 (95)
+-|.|+.+..| ...-|+|..+..+..++....+|. .+.-.|+|=+.. -++++|-.+|
T Consensus 20 ~~IniKV~~~g-----~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~r--I~~~~TP~~L 79 (95)
T 2l76_A 20 RLFPLKIRCRA-----DLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETE--LSPTATPRTL 79 (95)
T ss_dssp CCEEEEEECSS-----SEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEE--CCTTSCHHHH
T ss_pred CeEEEEEEcCC-----cEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcC--CCCCCCHhHc
Confidence 55888887533 456799999999999999999888 445566665554 4556666666
No 91
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=39.73 E-value=50 Score=19.44 Aligned_cols=54 Identities=7% Similarity=-0.077 Sum_probs=34.3
Q ss_pred eEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEEEe
Q 034423 30 KFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIVNY 88 (95)
Q Consensus 30 KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi~Y 88 (95)
.+.|+.+.|+++|...|..+. +.+..=|+.++. ....+.++++ |+. +..|++.-
T Consensus 25 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk-~L~D~~tL~~----~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 25 PLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGK-VLVETSTLKQ----SDVGSGAKLMLMA 82 (85)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTE-ECCTTCBTTT----TTCCTTEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCe-ECCCcCCHHH----CCCCCCCEEEEEE
Confidence 467899999999999998877 433333445665 3344545543 444 44666643
No 92
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=39.20 E-value=50 Score=19.27 Aligned_cols=52 Identities=23% Similarity=0.317 Sum_probs=35.4
Q ss_pred EEEEeeeCCCCC-ceeeeeEEecCCchHHHHHHHHHhhcC---------C----ceEEEEEcCccCCC
Q 034423 13 VVVHFRATGGAP-ILKQAKFKISGSDKFAKVIEFLCRHLG---------R----ETLFVYVNSAFSPN 66 (95)
Q Consensus 13 V~v~~~~~g~~P-~L~k~KflV~~~~t~~~~~~~LRk~L~---------~----~slFlyVnn~f~P~ 66 (95)
|+|+|-+ .+- ...+....++...|+++++..|..+.+ . +.+.+.||+..++.
T Consensus 2 v~V~~fa--~lr~~~g~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~ 67 (90)
T 2g1e_A 2 VTVRYYA--TLRPITKKKEETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITS 67 (90)
T ss_dssp EEEEECS--THHHHHTCSEEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGG
T ss_pred EEEEEeH--HHHHHcCCCEEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccc
Confidence 5666643 222 123445678877899999999987732 1 56889999987763
No 93
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.09 E-value=38 Score=19.47 Aligned_cols=12 Identities=8% Similarity=0.235 Sum_probs=6.1
Q ss_pred cHHHHHHHHhCC
Q 034423 69 ELVIDLYNNFGF 80 (95)
Q Consensus 69 ~~v~~LY~~~k~ 80 (95)
+.+.+++..|+.
T Consensus 23 ~~l~~~F~~~G~ 34 (93)
T 2cqh_A 23 DDLRQLFGDRKL 34 (93)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 345555555553
No 94
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.76 E-value=65 Score=19.54 Aligned_cols=56 Identities=4% Similarity=-0.074 Sum_probs=34.3
Q ss_pred eEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcc-cHHHHHHHHhCCCCEEEEEe
Q 034423 30 KFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPD-ELVIDLYNNFGFDGKLIVNY 88 (95)
Q Consensus 30 KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d-~~v~~LY~~~k~dG~Lyi~Y 88 (95)
.+.|+.+.|+++|...|..+. +.+..=|+.++.. ...| .++++. .-+++..|+|.-
T Consensus 25 ~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~-L~D~~~tL~~y--gI~~g~~l~l~~ 83 (102)
T 1v5o_A 25 SLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQL-LTDDHCSLGSY--GLKDGDMVVLLQ 83 (102)
T ss_dssp EEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEE-ECCSSSBHHHH--TCCTTEEEEECB
T ss_pred EEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEE-CCCCcccHHHC--CCCCCCEEEEEE
Confidence 367999999999999998887 4333334556642 3333 356543 122355666643
No 95
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=38.56 E-value=69 Score=19.92 Aligned_cols=37 Identities=11% Similarity=0.255 Sum_probs=26.8
Q ss_pred eEEEEEcCccCCCc-ccHHHHHHHHhCC---------CCEEEEEecCC
Q 034423 54 TLFVYVNSAFSPNP-DELVIDLYNNFGF---------DGKLIVNYACS 91 (95)
Q Consensus 54 slFlyVnn~f~P~~-d~~v~~LY~~~k~---------dG~Lyi~Ys~~ 91 (95)
|--|||.| ..|.. ++.+.+|+..|+. .||=.|.|++.
T Consensus 7 ~~wL~VgN-L~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~ 53 (89)
T 2wbr_A 7 SSWLLLKN-LTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTR 53 (89)
T ss_dssp CCEEEEEC-CCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSH
T ss_pred cceEEEeC-CCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCH
Confidence 44578998 46654 4589999999986 57777777654
No 96
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=37.97 E-value=27 Score=19.63 Aligned_cols=38 Identities=16% Similarity=0.102 Sum_probs=30.3
Q ss_pred eeEEecCCchHHHHHHHHHhhcCCceEEEEEcCccCCC
Q 034423 29 AKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPN 66 (95)
Q Consensus 29 ~KflV~~~~t~~~~~~~LRk~L~~~slFlyVnn~f~P~ 66 (95)
+.+.++...|+.++..-|...++.+.+-.-||+...|-
T Consensus 11 ~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl 48 (73)
T 2kmm_A 11 EIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPL 48 (73)
T ss_dssp CEEEECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCT
T ss_pred CEEEcCCCCcHHHHHHHHhhccccceEEEEECCEEeCC
Confidence 34678899999999988877776678888999976554
No 97
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=37.18 E-value=49 Score=19.29 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=22.4
Q ss_pred EEEcCccCC-CcccHHHHHHHHhCC----------CCEEEEEecCC
Q 034423 57 VYVNSAFSP-NPDELVIDLYNNFGF----------DGKLIVNYACS 91 (95)
Q Consensus 57 lyVnn~f~P-~~d~~v~~LY~~~k~----------dG~Lyi~Ys~~ 91 (95)
|||+| ..+ ..++.+.+++..|+. .|+=+|.|...
T Consensus 14 l~V~~-Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~ 58 (89)
T 3d2w_A 14 VFVGR-CTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADD 58 (89)
T ss_dssp EEEES-CCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCH
T ss_pred EEEeC-CCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCH
Confidence 67888 233 334467777777774 37888888654
No 98
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=37.15 E-value=15 Score=22.03 Aligned_cols=33 Identities=6% Similarity=0.324 Sum_probs=25.0
Q ss_pred EEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc
Q 034423 13 VVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL 50 (95)
Q Consensus 13 V~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L 50 (95)
..+|+++..+ .....|+++.|+++|..-|.+.+
T Consensus 5 m~lRvrs~~G-----~~Ri~v~~~~t~~~L~~~I~~~~ 37 (80)
T 2pjh_A 5 IIIRVQSPDG-----VKRITATKRETAATFLKKVAKEF 37 (80)
T ss_dssp CCCEEECSSE-----EEECCCCSSCCHHHHHHHHHHHT
T ss_pred EEEEEECCCC-----CEEEEcCCcChHHHHHHHHHHHc
Confidence 5677766543 22344889999999999999999
No 99
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=36.68 E-value=22 Score=21.09 Aligned_cols=55 Identities=7% Similarity=0.064 Sum_probs=36.5
Q ss_pred eeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEEEe
Q 034423 29 AKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIVNY 88 (95)
Q Consensus 29 ~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi~Y 88 (95)
..+.|+.+.|++++...|..+. +.+..-|+.++..+ ..+.++++ |+. +..|++..
T Consensus 22 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L-~D~~tL~~----~gi~~g~~i~l~~ 80 (88)
T 1sif_A 22 FTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSD----YNIQKESTLHLVL 80 (88)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEEC-CTTSBSGG----GTCCTTCEEEEEC
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEEC-CCCCcHHH----cCCCCCCEEEEEE
Confidence 4577899999999999998887 55555556676533 44555543 444 55666643
No 100
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=36.62 E-value=53 Score=19.57 Aligned_cols=33 Identities=18% Similarity=0.471 Sum_probs=16.1
Q ss_pred EEEcCccCCC--cccHHHHHHHHhCC-------CCEEEEEecC
Q 034423 57 VYVNSAFSPN--PDELVIDLYNNFGF-------DGKLIVNYAC 90 (95)
Q Consensus 57 lyVnn~f~P~--~d~~v~~LY~~~k~-------dG~Lyi~Ys~ 90 (95)
|||.| +.+. .++.|.+++..|+. .|+=+|.|..
T Consensus 30 l~V~n-l~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~ 71 (110)
T 1wf1_A 30 VFIGN-LNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSN 71 (110)
T ss_dssp EEECS-CCCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSS
T ss_pred EEEeC-CCcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECC
Confidence 55655 1222 34455555555553 3555555544
No 101
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.95 E-value=64 Score=18.62 Aligned_cols=72 Identities=11% Similarity=0.175 Sum_probs=44.7
Q ss_pred CcEEEEeeeCCCCCceeeeeE-EecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEE
Q 034423 11 RKVVVHFRATGGAPILKQAKF-KISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVN 87 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~Kf-lV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~ 87 (95)
..+.|.++...+- +.-.+ .|+.+.|++++...|..+. +.+..-|+.+... ...+.++++. .-+++..|++.
T Consensus 6 ~~m~i~Vk~~~g~---~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~-L~d~~tL~~~--~i~~g~~i~l~ 79 (89)
T 1wy8_A 6 SGMWIQVRTIDGS---KTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQ-LENGYTLFDY--DVGLNDIIQLL 79 (89)
T ss_dssp SCEEEEEEETTCS---CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEE-CCSSSBHHHH--TCCTTCEEEEE
T ss_pred CcEEEEEEECCCC---ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeE-CCCCCCHHHC--CCCCCCEEEEE
Confidence 3566666654321 22346 4999999999999998887 5555556667753 3556666653 12235677765
Q ss_pred e
Q 034423 88 Y 88 (95)
Q Consensus 88 Y 88 (95)
.
T Consensus 80 ~ 80 (89)
T 1wy8_A 80 V 80 (89)
T ss_dssp E
T ss_pred E
Confidence 4
No 102
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=35.65 E-value=64 Score=24.11 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=48.7
Q ss_pred cEEEEeeeCCCCCc--ee--------------eeeEEecCCchHHHHHHHHHh--hcCCceEEEEEcCccCCCcccHHHH
Q 034423 12 KVVVHFRATGGAPI--LK--------------QAKFKISGSDKFAKVIEFLCR--HLGRETLFVYVNSAFSPNPDELVID 73 (95)
Q Consensus 12 KV~v~~~~~g~~P~--L~--------------k~KflV~~~~t~~~~~~~LRk--~L~~~slFlyVnn~f~P~~d~~v~~ 73 (95)
||.|.-.+.+++|. ++ -+-|.=..+.+..+|...+++ .+|.. .+|++. .+.+
T Consensus 36 ki~IvTDSt~dL~~e~~~~~~I~vvPL~v~~~~~~Y~D~~di~~~efy~~m~~~~~~p~T---------SqPs~~-~~~~ 105 (315)
T 3fys_A 36 NIAVVTDSTAYIPKEMREQHQIHMIPLQVVFREETYREEIELDWKSFYEEVKKHNELPTT---------SQPPIG-ELVA 105 (315)
T ss_dssp CEEEEEEGGGCCCHHHHHHHTEEEECCEEECSSCEEEBTTTBCHHHHHHHHHTTTCCCEE---------ECCCHH-HHHH
T ss_pred cEEEEEECCCCCCHHHHHhCCeEEEeEEEEECCEEEECCCCCCHHHHHHHHHhCCCCccc---------CCCCHH-HHHH
Confidence 67777788888774 22 222322247788899999985 23433 378886 7888
Q ss_pred HHHHhCC--CCEEEEEecCC
Q 034423 74 LYNNFGF--DGKLIVNYACS 91 (95)
Q Consensus 74 LY~~~k~--dG~Lyi~Ys~~ 91 (95)
+|+.... |..|+|+.|+.
T Consensus 106 ~fe~l~~~~~~Ii~I~iSS~ 125 (315)
T 3fys_A 106 LYEELGKSYDAVISIHLSSG 125 (315)
T ss_dssp HHHHHTTTCSEEEEEESCTT
T ss_pred HHHHHHhcCCcEEEEeCCCc
Confidence 9999886 78999998864
No 103
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=35.37 E-value=29 Score=19.61 Aligned_cols=32 Identities=22% Similarity=0.624 Sum_probs=19.4
Q ss_pred EEEcCccCCCcc--------cHHHHHHHHhCC-------------CCEEEEEecC
Q 034423 57 VYVNSAFSPNPD--------ELVIDLYNNFGF-------------DGKLIVNYAC 90 (95)
Q Consensus 57 lyVnn~f~P~~d--------~~v~~LY~~~k~-------------dG~Lyi~Ys~ 90 (95)
|||+| +|... +.+.+++..|+. .|+=+|.|.+
T Consensus 4 l~V~n--Lp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~ 56 (81)
T 2krb_A 4 IVVDN--VPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYAS 56 (81)
T ss_dssp EEEES--CCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESS
T ss_pred EEEeC--CCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECC
Confidence 78988 45433 456666666653 2566666654
No 104
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.09 E-value=57 Score=18.94 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=18.4
Q ss_pred EEEcCccCCCcccHHHHHHHHhCC---------CCEEEEEecC
Q 034423 57 VYVNSAFSPNPDELVIDLYNNFGF---------DGKLIVNYAC 90 (95)
Q Consensus 57 lyVnn~f~P~~d~~v~~LY~~~k~---------dG~Lyi~Ys~ 90 (95)
|||.| + ...++.+.+++..|+. .|+=+|.|..
T Consensus 18 l~V~n-~-~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~ 58 (97)
T 1x5p_A 18 LYVYG-E-DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEK 58 (97)
T ss_dssp EEEEC-S-SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESS
T ss_pred EEEcC-C-CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECC
Confidence 56666 2 4445566666666642 4666666654
No 105
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} SCOP: c.119.1.0
Probab=34.95 E-value=92 Score=22.61 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=42.3
Q ss_pred cEEEEeeeCCCCCceeee--------------eEEecCCchHHHHHHHHHhh--cCCceEEEEEcCccCCCcccHHHHHH
Q 034423 12 KVVVHFRATGGAPILKQA--------------KFKISGSDKFAKVIEFLCRH--LGRETLFVYVNSAFSPNPDELVIDLY 75 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~--------------KflV~~~~t~~~~~~~LRk~--L~~~slFlyVnn~f~P~~d~~v~~LY 75 (95)
||.|.-.+.+++|.+++. -|.=..+.+..+|...+++. +|.. .+|++. .+.++|
T Consensus 3 ki~IvtDSt~dl~~~~~~~I~vvPl~v~~~~~~y~D~~di~~~efy~~~~~~~~~p~T---------Sqps~~-~~~~~f 72 (278)
T 3fdj_A 3 AMRLVADSACDIKELRGMVFKAVPLTISTDNEEFCDDGQLDIHRMLDILEKHKGRSYT---------ACPGID-AWLEAF 72 (278)
T ss_dssp CCEEEEEGGGCCSCCTTSEEEEECCEEECSSCEEECSTTCCHHHHHHHHHTCCSCCEE---------ECCCHH-HHHHHH
T ss_pred CEEEEEeCCCCCChHHhCCEEEEEEEEEECCEEEecCCCCCHHHHHHHHHhCCCCcee---------cCCCHH-HHHHHH
Confidence 555666666666664322 23223467788999988753 2332 267776 466666
Q ss_pred HHhCCCCEEEEEecCC
Q 034423 76 NNFGFDGKLIVNYACS 91 (95)
Q Consensus 76 ~~~k~dG~Lyi~Ys~~ 91 (95)
+ +-|..|+|+.|+.
T Consensus 73 ~--~~~~ii~i~iSs~ 86 (278)
T 3fdj_A 73 G--DDDEIFVVTITAG 86 (278)
T ss_dssp T--TCSEEEEEESCTT
T ss_pred h--cCCcEEEEECCCc
Confidence 6 2388999998874
No 106
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=34.53 E-value=32 Score=19.36 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=27.3
Q ss_pred eeeEEecCCchHHHHHHHHHhhcCCceEEEEEcCccCCCc
Q 034423 28 QAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNP 67 (95)
Q Consensus 28 k~KflV~~~~t~~~~~~~LRk~L~~~slFlyVnn~f~P~~ 67 (95)
.+.+.+ ...|+++++..|. ++.+.+-+.||+.++|..
T Consensus 6 g~~~~~-~~~tv~~ll~~l~--~~~~~v~vavN~~~v~~~ 42 (64)
T 2cu3_A 6 GEPRPL-EGKTLKEVLEEMG--VELKGVAVLLNEEAFLGL 42 (64)
T ss_dssp TEEECC-TTCCHHHHHHHHT--BCGGGEEEEETTEEEEGG
T ss_pred CEEEEc-CCCcHHHHHHHcC--CCCCcEEEEECCEECCcc
Confidence 344556 6789999988773 455677899999888754
No 107
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.13 E-value=67 Score=18.29 Aligned_cols=33 Identities=9% Similarity=0.310 Sum_probs=16.2
Q ss_pred EEEcCccCC-CcccHHHHHHHHhCC-------CCEEEEEecC
Q 034423 57 VYVNSAFSP-NPDELVIDLYNNFGF-------DGKLIVNYAC 90 (95)
Q Consensus 57 lyVnn~f~P-~~d~~v~~LY~~~k~-------dG~Lyi~Ys~ 90 (95)
|||.| ..+ ..++.|.+++..|+. .|+=+|.|.+
T Consensus 11 l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~ 51 (90)
T 2dnq_A 11 LFIGN-LPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIED 51 (90)
T ss_dssp EEEES-CCSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESS
T ss_pred EEEeC-CCCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECC
Confidence 56666 222 223345555555553 3555555543
No 108
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=34.06 E-value=86 Score=19.53 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=43.1
Q ss_pred cEEEEeeeCCCCCceeeeeEEecC---CchHHHHHHHHHhhc----C---CceEEEE---EcCccCCCcccHHHHHHHHh
Q 034423 12 KVVVHFRATGGAPILKQAKFKISG---SDKFAKVIEFLCRHL----G---RETLFVY---VNSAFSPNPDELVIDLYNNF 78 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~---~~t~~~~~~~LRk~L----~---~~slFly---Vnn~f~P~~d~~v~~LY~~~ 78 (95)
||+|+|. ..++.||- ++|++++.+---+|. + +..+.+. ...--+..||..+.++-+
T Consensus 4 KvtV~fg---------~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dVld-- 72 (85)
T 2ns5_A 4 KVTVCFG---------RTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDVAD-- 72 (85)
T ss_dssp EEEEEET---------TEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHHSC--
T ss_pred EEEEEEC---------CEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhhcc--
Confidence 7888885 34556765 458888876543333 2 2233433 212237788999999887
Q ss_pred CCCCEEEEEecCC
Q 034423 79 GFDGKLIVNYACS 91 (95)
Q Consensus 79 k~dG~Lyi~Ys~~ 91 (95)
|+.|+.=.|..+
T Consensus 73 -D~e~i~A~~~~~ 84 (85)
T 2ns5_A 73 -DKDRLVAVFDEQ 84 (85)
T ss_dssp -TTEEEEEEEEEC
T ss_pred -CcceEEEEeccC
Confidence 677888777654
No 109
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=34.03 E-value=87 Score=19.57 Aligned_cols=56 Identities=9% Similarity=0.096 Sum_probs=37.8
Q ss_pred eeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEEEe
Q 034423 28 QAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIVNY 88 (95)
Q Consensus 28 k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi~Y 88 (95)
...+.|+.+.|++++..-|.++. +.+..-|+.++..+ ..+.++++ |+. +..|++..
T Consensus 88 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L-~d~~tL~~----~~i~~~~~i~l~~ 147 (152)
T 3b08_A 88 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSD----YNIQKESTLHLVL 147 (152)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEC-CTTSBTGG----GTCCTTCEEEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEEC-CCCCCHHH----cCCCCCCEEEEEE
Confidence 34578999999999999998887 55555566676533 44555543 443 56777654
No 110
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=33.78 E-value=11 Score=22.37 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=30.6
Q ss_pred CCCCceeeeeEEecCCchHHHHHHHHHhhcCCceEEEEEcCccCCC
Q 034423 21 GGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPN 66 (95)
Q Consensus 21 g~~P~L~k~KflV~~~~t~~~~~~~LRk~L~~~slFlyVnn~f~P~ 66 (95)
..+-.++...+.++...|+.+++..|. ++.+.+-+.||+.++|.
T Consensus 15 ~e~~~~n~~~~~~~~~~Tv~dLl~~L~--~~~~~v~VavNg~~v~~ 58 (77)
T 1rws_A 15 KVIGRNIEKEIEWREGMKVRDILRAVG--FNTESAIAKVNGKVVLE 58 (77)
T ss_dssp BSTTCCCCCCCCCCSSCCHHHHHHTTT--CSSCSSCEEETTEEECS
T ss_pred HHhcccCCEEEECCCCCcHHHHHHHhC--CCCcCEEEEECCEECCC
Confidence 334445555667788889999887664 44556678999987764
No 111
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=33.33 E-value=75 Score=18.66 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=37.5
Q ss_pred eeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEE
Q 034423 28 QAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVN 87 (95)
Q Consensus 28 k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~ 87 (95)
...+.|+.+.|++++-..|..+. +.+..=|+.++..+...+.++++. .-+++..|++.
T Consensus 22 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y--~I~~gs~i~lv 81 (84)
T 2kk8_A 22 SFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC--QIVPTSDIQLE 81 (84)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHH--TCCTTSCEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHc--CCCCCCEEEEE
Confidence 34468999999999999998887 555555666775314556666653 11234556554
No 112
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=31.57 E-value=99 Score=19.50 Aligned_cols=44 Identities=5% Similarity=-0.045 Sum_probs=31.1
Q ss_pred cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--C--CceEEEE
Q 034423 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--G--RETLFVY 58 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~--~~slFly 58 (95)
.|+|.+++.+. + ......|+.+.|+++|-.-|..+. | .+.|++.
T Consensus 6 ~v~l~V~~~~~-~--~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 6 VYDLEITTNAT-D--FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp EEEEEEEESSC-C--SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred EEEEEEEECCC-C--ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 57777776433 3 345568999999999999998887 3 3455443
No 113
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=31.53 E-value=93 Score=19.15 Aligned_cols=45 Identities=20% Similarity=0.126 Sum_probs=29.9
Q ss_pred cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--C--CceEEEE
Q 034423 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--G--RETLFVY 58 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~--~~slFly 58 (95)
-|.+.+.. +...-......|+.++|+++|-.-|..+. | .+.|+++
T Consensus 14 ~v~l~It~--s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~ 62 (97)
T 2kj6_A 14 SVHLHITH--ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY 62 (97)
T ss_dssp CEEEEEEE--TTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE
T ss_pred eEEEEEEE--CCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 46666655 22222345578999999999999998888 3 3455443
No 114
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.33 E-value=85 Score=19.62 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=24.7
Q ss_pred ceEEEEEcCccCCC-cccHHHHHHHHhCC---------CCEEEEEecC
Q 034423 53 ETLFVYVNSAFSPN-PDELVIDLYNNFGF---------DGKLIVNYAC 90 (95)
Q Consensus 53 ~slFlyVnn~f~P~-~d~~v~~LY~~~k~---------dG~Lyi~Ys~ 90 (95)
.+-=|||.| +.+. .++.|.+++..|+. .|+=+|.|..
T Consensus 15 ~~~~LfV~n-Lp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~ 61 (105)
T 1sjq_A 15 PSRVIHIRK-LPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNT 61 (105)
T ss_dssp CCCEEEECS-CCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESS
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECC
Confidence 334488888 2333 45578999999986 2666777754
No 115
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=31.27 E-value=88 Score=18.83 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=26.7
Q ss_pred cCCchHHHHHHHH-Hhhc--CCceEEEEEcCccCCCcccHHHH
Q 034423 34 SGSDKFAKVIEFL-CRHL--GRETLFVYVNSAFSPNPDELVID 73 (95)
Q Consensus 34 ~~~~t~~~~~~~L-Rk~L--~~~slFlyVnn~f~P~~d~~v~~ 73 (95)
+++.|+++|-.-| ..+- |.+..=|..++. ....+.++++
T Consensus 21 ~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk-~L~D~~tL~~ 62 (87)
T 2lxa_A 21 SPSDTILQIKQHLISEEKASHISEIKLLLKGK-VLHDNLFLSD 62 (87)
T ss_dssp CTTCBHHHHHHHHHHTTSCSSSTTEEEEETTE-ECCTTCBHHH
T ss_pred CCCCcHHHHHHHHHHHhcCCChHHEEEEECCE-ECcCcCCHHH
Confidence 4999999999999 5554 444444555665 4566667775
No 116
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.27 E-value=17 Score=22.62 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=13.7
Q ss_pred EEEcCccCCC---cccHHHHHHHHhCC
Q 034423 57 VYVNSAFSPN---PDELVIDLYNNFGF 80 (95)
Q Consensus 57 lyVnn~f~P~---~d~~v~~LY~~~k~ 80 (95)
|||.| +|. .++.|.+|+..|+.
T Consensus 18 l~V~n--Lp~~~~te~dL~~lF~~fG~ 42 (102)
T 1x4d_A 18 VHIMD--FQRGKNLRYQLLQLVEPFGV 42 (102)
T ss_dssp EEEES--CCCSSSHHHHHHTTTGGGSC
T ss_pred EEEeC--CCCCcCCHHHHHHHHHhcCC
Confidence 77777 455 34456666666664
No 117
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=31.16 E-value=60 Score=23.57 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCCceEEEEEcCccCCCcccHHHHHHH
Q 034423 41 KVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYN 76 (95)
Q Consensus 41 ~~~~~LRk~L~~~slFlyVnn~f~P~~d~~v~~LY~ 76 (95)
.+.+-||++||++++.-|-++...|-.+.+-.++.+
T Consensus 19 tv~~~i~~~lP~~~~iy~~D~a~~PYG~ks~~~i~~ 54 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAK 54 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEeCCCCCCCCCCCHHHHHH
Confidence 467779999998887666677778976666665544
No 118
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=30.84 E-value=59 Score=22.22 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=21.7
Q ss_pred CCceEEEEEcCccCCCcccHHHHHHHHhCC
Q 034423 51 GRETLFVYVNSAFSPNPDELVIDLYNNFGF 80 (95)
Q Consensus 51 ~~~slFlyVnn~f~P~~d~~v~~LY~~~k~ 80 (95)
++.-+.|||.|---+-..+.+.+++..|+.
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~ 72 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGT 72 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSC
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCC
Confidence 566788999984233455678888888875
No 119
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=30.41 E-value=1.3e+02 Score=20.46 Aligned_cols=38 Identities=11% Similarity=0.192 Sum_probs=29.2
Q ss_pred CCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEE
Q 034423 20 TGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVY 58 (95)
Q Consensus 20 ~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFly 58 (95)
.+.-|.+= +.+.||++.|+.+|-.+|..-. ....||-|
T Consensus 16 ~~~~p~iW-Rri~Vp~~~TL~~LH~vIq~afgw~~~HL~~F 55 (188)
T 2i1s_A 16 KGITPQIW-RRIQVPENYTFLDLHKAIQAVMDWEDYHLHEF 55 (188)
T ss_dssp TTCSSCEE-EEEEEETTCBHHHHHHHHHHHTTCCCCSCEEE
T ss_pred CCCCCCeE-EEEEECCCCCHHHHHHHHHHHhCCCCCEeeEE
Confidence 44456553 6679999999999999999999 55666654
No 120
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=30.20 E-value=58 Score=20.27 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=23.3
Q ss_pred EEEEEcCccCCCcccHHHHHHHHhCC---------CCEEEEEecCC
Q 034423 55 LFVYVNSAFSPNPDELVIDLYNNFGF---------DGKLIVNYACS 91 (95)
Q Consensus 55 lFlyVnn~f~P~~d~~v~~LY~~~k~---------dG~Lyi~Ys~~ 91 (95)
-=|||.| ....++.+.+++..|+. .|+=+|.|...
T Consensus 40 ~~lfVgn--l~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~ 83 (121)
T 2bz2_A 40 NTLYVYG--EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKM 83 (121)
T ss_dssp CEEEEEC--SSCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSH
T ss_pred CEEEEcC--CCCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCH
Confidence 3467777 35666677777877764 46777777653
No 121
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=29.76 E-value=41 Score=20.64 Aligned_cols=56 Identities=7% Similarity=0.042 Sum_probs=33.5
Q ss_pred cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHH
Q 034423 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVID 73 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~ 73 (95)
.|.|.++..|..- .+.|+.+.|+++|...|.++. +.+..=|+.++. ....+.++++
T Consensus 28 ~i~I~Vk~~g~~~-----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk-~L~D~~tL~~ 85 (101)
T 3m63_B 28 SLNIHIKSGQDKW-----EVNVAPESTVLQFKEAINKANGIPVANQRLIYSGK-ILKDDQTVES 85 (101)
T ss_dssp -CCEEEECSSCCC-----CBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTE-ECCTTSBTTT
T ss_pred EEEEEEEECCEEE-----EEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCE-ECCCcCcHHH
Confidence 3555555433322 357899999999999998887 322222334664 3445556554
No 122
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=29.02 E-value=57 Score=19.16 Aligned_cols=53 Identities=11% Similarity=0.126 Sum_probs=34.6
Q ss_pred cEEEEeeeCCC--CCceeeeeEEecCCchHHHHHHHHHhhcCC-------------ceEEEEEcCccCC
Q 034423 12 KVVVHFRATGG--APILKQAKFKISGSDKFAKVIEFLCRHLGR-------------ETLFVYVNSAFSP 65 (95)
Q Consensus 12 KV~v~~~~~g~--~P~L~k~KflV~~~~t~~~~~~~LRk~L~~-------------~slFlyVnn~f~P 65 (95)
+|+|+|-+.=. +. -+...+.++...|+++++..|..+-+. +.+-++||+..++
T Consensus 2 ~i~V~~fa~lre~~g-~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~ 69 (89)
T 3po0_A 2 SMEWKLFADLAEVAG-SRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAA 69 (89)
T ss_dssp EEEEEECHHHHHHHT-CSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECC
T ss_pred EEEEEEcHHHHHHhC-CCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECC
Confidence 56777654110 11 123456777889999999999876521 2378999998765
No 123
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=28.99 E-value=80 Score=17.62 Aligned_cols=54 Identities=6% Similarity=0.060 Sum_probs=35.4
Q ss_pred eEE-ecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEEEe
Q 034423 30 KFK-ISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIVNY 88 (95)
Q Consensus 30 Kfl-V~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi~Y 88 (95)
.+. |+.+.|++++-..|..+. +.+..-|+.++.. ...+.++++ |+. +..|++..
T Consensus 17 ~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~-L~d~~tL~~----~~i~~g~~i~l~~ 75 (78)
T 2faz_A 17 TVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQ-MEDGHTLFD----YEVRLNDTIQLLV 75 (78)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEE-CCTTCBTTT----TTCCTTCEEEEEE
T ss_pred EEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEE-CCCCCCHHH----cCCCCCCEEEEEE
Confidence 466 999999999999998887 5455555566653 344445543 443 55666654
No 124
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=28.46 E-value=96 Score=18.38 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=37.0
Q ss_pred eEEecCCchHHHHHHHHHhh-----cCCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEEEec
Q 034423 30 KFKISGSDKFAKVIEFLCRH-----LGRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIVNYA 89 (95)
Q Consensus 30 KflV~~~~t~~~~~~~LRk~-----L~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi~Ys 89 (95)
.+.|+.+.|++++-..|..+ ++.+..=|+.++.. ...+.++++ |+. +..|++.-.
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~-L~D~~tL~~----ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKI-LNDDTALKE----YKIDEKNFVVVMVT 75 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEE-CCTTSBGGG----GTCCSSSEEEEEES
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEE-CCCcCcHHH----CCCCCCCEEEEEEe
Confidence 57899999999999999887 44444445556653 344555543 454 567777654
No 125
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=27.76 E-value=30 Score=21.09 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=19.3
Q ss_pred EEecCCchHHHHHHHHHhhcC
Q 034423 31 FKISGSDKFAKVIEFLCRHLG 51 (95)
Q Consensus 31 flV~~~~t~~~~~~~LRk~L~ 51 (95)
..||.+.++.+|+.-|++||+
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~ 26 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKIS 26 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTT
T ss_pred EEeCCCCCHHHHHHHHHHHHc
Confidence 478999999999999999995
No 126
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.72 E-value=90 Score=17.93 Aligned_cols=23 Identities=9% Similarity=0.440 Sum_probs=14.0
Q ss_pred EEEcCccCC-CcccHHHHHHHHhCC
Q 034423 57 VYVNSAFSP-NPDELVIDLYNNFGF 80 (95)
Q Consensus 57 lyVnn~f~P-~~d~~v~~LY~~~k~ 80 (95)
|||.| ..+ ..++.+.+++..|+.
T Consensus 12 l~V~n-Lp~~~t~~~l~~~F~~~G~ 35 (99)
T 2div_A 12 LWMGD-LEPYMDENFISRAFATMGE 35 (99)
T ss_dssp EEECS-CCTTCCHHHHHHHHHHTTC
T ss_pred EEEeC-CCCCCCHHHHHHHHHHhCC
Confidence 67877 222 234467777777764
No 127
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=27.45 E-value=1.2e+02 Score=19.12 Aligned_cols=51 Identities=12% Similarity=0.076 Sum_probs=42.1
Q ss_pred CCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhcCCceEEEEE
Q 034423 9 STRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYV 59 (95)
Q Consensus 9 ~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L~~~slFlyV 59 (95)
.+.-|.|--++.|..|++..-..+-+...|+..|-.-|.+.|.++-.|-.|
T Consensus 8 ~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~V 58 (93)
T 2eki_A 8 YLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALV 58 (93)
T ss_dssp SCCEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEE
T ss_pred hcCeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEE
Confidence 345678888899999999875544399999999999999999887778777
No 128
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=27.39 E-value=41 Score=20.13 Aligned_cols=22 Identities=23% Similarity=0.381 Sum_probs=14.4
Q ss_pred EEEcCccCC--CcccHHHHHHHHhCC
Q 034423 57 VYVNSAFSP--NPDELVIDLYNNFGF 80 (95)
Q Consensus 57 lyVnn~f~P--~~d~~v~~LY~~~k~ 80 (95)
|||.| +| -.++.+.+++..|+.
T Consensus 22 lfV~n--Lp~~~te~~L~~~F~~~G~ 45 (99)
T 4fxv_A 22 LIVNY--LPQNMTQDELRSLFSSIGE 45 (99)
T ss_dssp EEEES--CCTTCCHHHHHHHHHTTSC
T ss_pred EEEeC--CCCCCCHHHHHHHHHhcCC
Confidence 79999 44 234467777777764
No 129
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.01 E-value=1e+02 Score=18.13 Aligned_cols=69 Identities=3% Similarity=-0.026 Sum_probs=41.9
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhcCCceEEEEEcCccCCCcc-cHHHHHHHHhCC--CCEEEEE
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPD-ELVIDLYNNFGF--DGKLIVN 87 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L~~~slFlyVnn~f~P~~d-~~v~~LY~~~k~--dG~Lyi~ 87 (95)
..+.|.++...+ +...+.|+.+.|+++|...|..+. .+..-|+.++. ....+ .++++ |+. +..|++.
T Consensus 6 ~~m~i~Vk~~~g----~~~~~~v~~~~TV~~LK~~i~~~~-~~~qrLi~~Gk-~L~D~~~tL~~----y~i~~g~~i~l~ 75 (95)
T 1wia_A 6 SGINVRLKFLND----TEELAVARPEDTVGTLKSKYFPGQ-ESQMKLIYQGR-LLQDPARTLSS----LNITNNCVIHCH 75 (95)
T ss_dssp CSEEEEEEETTT----EEEEEEECSSSBHHHHHHHHSSST-TTTCEEEETTE-ECCCSSCBTTT----TTCCTTEEEEEE
T ss_pred CeEEEEEEeCCC----CEEEEEECCCCcHHHHHHHHHhhC-cCcEEEEECCE-EccCCcCCHHH----cCCCCCCEEEEE
Confidence 357777765332 234578999999999999998776 22223334554 33444 56654 444 4566665
Q ss_pred ec
Q 034423 88 YA 89 (95)
Q Consensus 88 Ys 89 (95)
..
T Consensus 76 ~~ 77 (95)
T 1wia_A 76 RS 77 (95)
T ss_dssp CC
T ss_pred EC
Confidence 43
No 130
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=26.66 E-value=87 Score=18.15 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=13.2
Q ss_pred EEEEcCccCC--CcccHHHHHHHHhCC
Q 034423 56 FVYVNSAFSP--NPDELVIDLYNNFGF 80 (95)
Q Consensus 56 FlyVnn~f~P--~~d~~v~~LY~~~k~ 80 (95)
=|||.| +| ..++.+.+++..|+.
T Consensus 11 ~l~V~n--Lp~~~t~~~l~~~F~~~G~ 35 (102)
T 2xs2_A 11 TVFVGG--IDVRMDETEIRSFFARYGS 35 (102)
T ss_dssp EEEEEC--CCTTCCHHHHHHHHGGGSC
T ss_pred EEEEeC--CCCCCCHHHHHHHHHhCCC
Confidence 377877 34 234456666666653
No 131
>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus}
Probab=26.59 E-value=97 Score=22.46 Aligned_cols=47 Identities=11% Similarity=0.084 Sum_probs=34.6
Q ss_pred CCchHHHHHHHHHhh--cCCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEEEecCC
Q 034423 35 GSDKFAKVIEFLCRH--LGRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIVNYACS 91 (95)
Q Consensus 35 ~~~t~~~~~~~LRk~--L~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi~Ys~~ 91 (95)
.+.+..+|...+++. +|.. .+|++. .+.++|+.... |..|+|+.|+.
T Consensus 41 ~di~~~efy~~~~~~~~~p~T---------Sqps~~-~~~~~f~~l~~~~~~ii~i~lSs~ 91 (280)
T 2dt8_A 41 EEITPTEIFQKVREGAAFPTT---------SQPSPE-DFARVYREALEEADHVLSLHISGK 91 (280)
T ss_dssp TTCCHHHHHHHHHTTCCCCEE---------ECCCHH-HHHHHHHHHTTSCSEEEEEESCTT
T ss_pred CCCCHHHHHHHHHhCCCCccc---------CCCCHH-HHHHHHHHHHhCCCeEEEEECCCc
Confidence 467888999988752 3433 368887 67889988855 67899988764
No 132
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=26.33 E-value=54 Score=19.52 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=30.1
Q ss_pred eeeeEEec--CCchHHHHHHHHHhhcC-CceEEEEEcCccCCCcc
Q 034423 27 KQAKFKIS--GSDKFAKVIEFLCRHLG-RETLFVYVNSAFSPNPD 68 (95)
Q Consensus 27 ~k~KflV~--~~~t~~~~~~~LRk~L~-~~slFlyVnn~f~P~~d 68 (95)
..+.+.++ ...|+++++..|. ++ .+.+=+-+|+.++|..+
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~l~--~~~~~~vAVavNg~iVpr~~ 48 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSALK--VAQAEYVTVELNGEVLEREA 48 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHHHT--CSCTTTCCEEETTEECCTTH
T ss_pred CCEEEEcCCCCCCcHHHHHHHcC--CCCCCcEEEEECCEECChHH
Confidence 34456777 7899999998763 44 55666999999999875
No 133
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=25.62 E-value=39 Score=19.24 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=27.0
Q ss_pred eEEecCCchHHHHHHHHHhhcCC-ceE--EEEEcCccCCC
Q 034423 30 KFKISGSDKFAKVIEFLCRHLGR-ETL--FVYVNSAFSPN 66 (95)
Q Consensus 30 KflV~~~~t~~~~~~~LRk~L~~-~sl--FlyVnn~f~P~ 66 (95)
.+.++...|+++++..|..+.+. +.+ -+.||+.+++.
T Consensus 19 ~~~~~~~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~ 58 (77)
T 2q5w_D 19 DIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQK 58 (77)
T ss_dssp ECCCSSCEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECT
T ss_pred EEECCCCCCHHHHHHHHHHHCcchhcceEEEEECCEECCC
Confidence 34557788999999998777422 335 79999987764
No 134
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=25.38 E-value=83 Score=23.08 Aligned_cols=71 Identities=4% Similarity=-0.018 Sum_probs=46.8
Q ss_pred CcEEEEeeeCCCCCc----------------eeeeeE-EecCCchHHHHHHHHHhh---cCCceEEEEEcCccCCCcccH
Q 034423 11 RKVVVHFRATGGAPI----------------LKQAKF-KISGSDKFAKVIEFLCRH---LGRETLFVYVNSAFSPNPDEL 70 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~----------------L~k~Kf-lV~~~~t~~~~~~~LRk~---L~~~slFlyVnn~f~P~~d~~ 70 (95)
.||.|.-.+.+++|. ++-+-| .=..+.+..+|...+|.. ++. +.+|++. .
T Consensus 3 ~ki~IvtDSt~dl~~e~~~~~~I~vvPl~v~~~~~~y~~D~~di~~~efy~~~~~~~~~~p~---------TSqps~~-~ 72 (297)
T 3nyi_A 3 AMYKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPK---------TSLPSVE-S 72 (297)
T ss_dssp -CCEEEEEGGGCCCHHHHHHHTEEEECCEEESSSSCEEEBTTTBCHHHHHHHHHHCTTCCCE---------EECCCHH-H
T ss_pred CCEEEEEecCCCCCHHHHHhCCeEEEEEEEEECCEEEecCCCCCCHHHHHHHHHhCCCCCce---------ecCCCHH-H
Confidence 355566666666552 233345 333477889999999764 233 2378887 7
Q ss_pred HHHHHHHhCC--CCEEEEEecCC
Q 034423 71 VIDLYNNFGF--DGKLIVNYACS 91 (95)
Q Consensus 71 v~~LY~~~k~--dG~Lyi~Ys~~ 91 (95)
+.++|+.... |..|+|+.|+.
T Consensus 73 ~~~~f~~l~~~g~~ii~i~iSs~ 95 (297)
T 3nyi_A 73 YADVFRSFVEQGFPVVCFTITTL 95 (297)
T ss_dssp HHHHHHHHHTTTCCEEEEESCTT
T ss_pred HHHHHHHHHHCCCeEEEEECCCc
Confidence 8889988765 78999998874
No 135
>3tuo_A DNA-binding protein SATB1; 1.70A {Homo sapiens}
Probab=25.11 E-value=64 Score=21.08 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=36.4
Q ss_pred EEecCCchHHHHHHHHHhhc--CC-----ceEEEEEcC-------ccCCCcccHHHHHHH
Q 034423 31 FKISGSDKFAKVIEFLCRHL--GR-----ETLFVYVNS-------AFSPNPDELVIDLYN 76 (95)
Q Consensus 31 flV~~~~t~~~~~~~LRk~L--~~-----~slFlyVnn-------~f~P~~d~~v~~LY~ 76 (95)
..||++..|.|++..--.+| .. -.=-+-|+| ...+.|+.++||+-.
T Consensus 33 viI~~~t~f~qLV~taL~~LGYs~~~a~~A~G~I~v~nWkPLp~~~itd~p~~TV~d~L~ 92 (105)
T 3tuo_A 33 VLVRKDMLFNQLIEMALLSLGYSHSSAAQAKGLIQVGKWNPVPLSYVTDAPDATVADMLQ 92 (105)
T ss_dssp EEEETTSBGGGHHHHHHHHTTCCHHHHHHCEEEEEETTSCCBCGGGTCCCTTCBHHHHHT
T ss_pred EEEeccchHHHHHHHHHHHcCCCchhhhhccceEEEccccCcCHHHcCCCchhhHHHHHH
Confidence 58999999999999998999 21 122367887 778899999999764
No 136
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=24.94 E-value=24 Score=21.75 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=33.3
Q ss_pred cEEEEeeeCCCCC-ceeeeeEEecCCchHHHHHHHHHhhcC---C-----c----eE-------EEEEcCccCC
Q 034423 12 KVVVHFRATGGAP-ILKQAKFKISGSDKFAKVIEFLCRHLG---R-----E----TL-------FVYVNSAFSP 65 (95)
Q Consensus 12 KV~v~~~~~g~~P-~L~k~KflV~~~~t~~~~~~~LRk~L~---~-----~----sl-------FlyVnn~f~P 65 (95)
+|+|+|-+ .+- .+.+....++ ..|+++++..|..+.+ . . .+ .+.||+..++
T Consensus 5 ~v~V~~fa--~lr~~~g~~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~ 75 (99)
T 2l52_A 5 EVKVKLFA--NLREAAGTPELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIR 75 (99)
T ss_dssp EEEEEECT--HHHHHHSSSEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGG
T ss_pred EEEEEEeH--HHHHHhCCCeEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcc
Confidence 57787754 222 1233455666 6899999999977642 1 1 24 7999998776
No 137
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=24.91 E-value=97 Score=18.62 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=17.7
Q ss_pred EEEEcCccCC--CcccHHHHHHHHhCC-------CCEEEEEecC
Q 034423 56 FVYVNSAFSP--NPDELVIDLYNNFGF-------DGKLIVNYAC 90 (95)
Q Consensus 56 FlyVnn~f~P--~~d~~v~~LY~~~k~-------dG~Lyi~Ys~ 90 (95)
=|||.| +| ..++.+.+++..|+. .|+=+|.|.+
T Consensus 33 ~l~V~n--Lp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~ 74 (108)
T 2jvo_A 33 RLFVRP--FPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEE 74 (108)
T ss_dssp EEEECS--SCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSS
T ss_pred EEEEEC--CCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECC
Confidence 367777 33 233355555666654 3555666654
No 138
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=24.21 E-value=1.1e+02 Score=17.64 Aligned_cols=10 Identities=10% Similarity=0.371 Sum_probs=4.9
Q ss_pred HHHHHHHHhC
Q 034423 70 LVIDLYNNFG 79 (95)
Q Consensus 70 ~v~~LY~~~k 79 (95)
.+.+++..|+
T Consensus 16 ~l~~~F~~~G 25 (101)
T 2hvz_A 16 ELERAFSYYG 25 (101)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 4455555554
No 139
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=24.11 E-value=61 Score=21.54 Aligned_cols=39 Identities=8% Similarity=0.143 Sum_probs=30.4
Q ss_pred CCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcC
Q 034423 23 APILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNS 61 (95)
Q Consensus 23 ~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn 61 (95)
+|...-+-..|..+.++++++..|++++ .+..=|..+..
T Consensus 18 llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~ 58 (128)
T 2kc2_A 18 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRE 58 (128)
T ss_dssp CTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEE
T ss_pred cCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccccccccc
Confidence 5777888899999999999999999999 32222555643
No 140
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=28.95 E-value=17 Score=20.46 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=27.6
Q ss_pred eEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHH
Q 034423 30 KFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVID 73 (95)
Q Consensus 30 KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~ 73 (95)
.+.|+.+.|++++...|.++. +.+..-|+.++. ....+.++++
T Consensus 14 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk-~L~d~~tL~~ 58 (76)
T 3b1l_X 14 PVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGK-ELPNHLTVQN 58 (76)
Confidence 367889999999999888777 444444444554 2344445544
No 141
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=22.95 E-value=1.5e+02 Score=18.72 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=32.7
Q ss_pred ceeeeeEEecCCc-hHHHHHHHHHhhcCCceEEEEEcCccCCCcccHHHHHHHHhCCCC
Q 034423 25 ILKQAKFKISGSD-KFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDG 82 (95)
Q Consensus 25 ~L~k~KflV~~~~-t~~~~~~~LRk~L~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG 82 (95)
.+++.-..++.+. .+..+..+|++. +....-+|+|.. ..+..|++..+..|
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~------~~~~~l~~~L~~~~ 54 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTR------RKVEELTTKLRNDK 54 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSH------HHHHHHHHHHHHTT
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCH------HHHHHHHHHHHHcC
Confidence 4566666777776 788888777653 556677888764 45555665555433
No 142
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.70 E-value=1.2e+02 Score=17.62 Aligned_cols=68 Identities=3% Similarity=0.059 Sum_probs=40.9
Q ss_pred cEEEEeeeCCCCCceeeeeEEecCC-----chHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CC
Q 034423 12 KVVVHFRATGGAPILKQAKFKISGS-----DKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DG 82 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~~-----~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG 82 (95)
.+.|.++..+. ...+.|+.+ .|+++|-..|..+. +.+..=|+.++..+...+.++++ |+. +.
T Consensus 7 ~~~v~Vk~~~~-----~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~----~~i~~g~ 77 (92)
T 1wxv_A 7 GLTVTVTHSNE-----KHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSA----LGIQDGC 77 (92)
T ss_dssp SEEEEEECSSS-----EEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHH----HTCCSSE
T ss_pred eEEEEEEECCE-----EEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHH----CCCCCCC
Confidence 56777665332 335678885 99999999998877 43333344566533332446665 343 44
Q ss_pred EEEEEe
Q 034423 83 KLIVNY 88 (95)
Q Consensus 83 ~Lyi~Y 88 (95)
.|+|.=
T Consensus 78 ~i~l~~ 83 (92)
T 1wxv_A 78 RVMLIG 83 (92)
T ss_dssp EEEEES
T ss_pred EEEEEe
Confidence 566543
No 143
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=22.42 E-value=1.3e+02 Score=17.70 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=34.5
Q ss_pred EecCCchHHHHHHHHHhhc--CCceEEEE---EcCccCCCcccHHHHHHHHhCC--CCEEEEEecC
Q 034423 32 KISGSDKFAKVIEFLCRHL--GRETLFVY---VNSAFSPNPDELVIDLYNNFGF--DGKLIVNYAC 90 (95)
Q Consensus 32 lV~~~~t~~~~~~~LRk~L--~~~slFly---Vnn~f~P~~d~~v~~LY~~~k~--dG~Lyi~Ys~ 90 (95)
.|+.+.|+++|-..|..+. +.+..=|+ .++. ....+.++++ |+. +..|.|--+.
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk-~L~D~~~L~~----~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGK-PAENDVKLGA----LKLKPNTKIMMMGTR 83 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTE-ECCTTSBHHH----HTCCTTEEEEEECCC
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCc-CcCCCCCHHH----cCCCCCCEEEEEecC
Confidence 6799999999999998887 33333344 4554 3344556665 343 5566665443
No 144
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=22.29 E-value=1.4e+02 Score=18.13 Aligned_cols=46 Identities=13% Similarity=0.030 Sum_probs=31.2
Q ss_pred CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc----CCceEEEE
Q 034423 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL----GRETLFVY 58 (95)
Q Consensus 11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L----~~~slFly 58 (95)
.-|+|.++... ..-+.....|+.++|+++|-.-|..+. ..+.|++.
T Consensus 14 ~~v~l~It~s~--~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 14 DFIKVNVSNSH--NDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp CEEEEEEEESS--CSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred CeEEEEEEECC--CCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 35777766522 111345578999999999999998888 34566544
No 145
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.24 E-value=1.2e+02 Score=17.50 Aligned_cols=21 Identities=24% Similarity=0.608 Sum_probs=12.1
Q ss_pred EEEcCccCC--CcccHHHHHHHHhC
Q 034423 57 VYVNSAFSP--NPDELVIDLYNNFG 79 (95)
Q Consensus 57 lyVnn~f~P--~~d~~v~~LY~~~k 79 (95)
|||.| +| ..++.|.+++..|+
T Consensus 18 l~V~n--lp~~~t~~~l~~~F~~~G 40 (107)
T 2cph_A 18 ILVRN--IPFQANQREIRELFSTFG 40 (107)
T ss_dssp EEEES--CCTTCCHHHHHHHHHTTS
T ss_pred EEEeC--CCCcCCHHHHHHHHHccC
Confidence 66777 33 23445666666664
No 146
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=22.17 E-value=60 Score=19.71 Aligned_cols=23 Identities=13% Similarity=0.551 Sum_probs=14.3
Q ss_pred EEEcCccCCC-cccHHHHHHHHhCC
Q 034423 57 VYVNSAFSPN-PDELVIDLYNNFGF 80 (95)
Q Consensus 57 lyVnn~f~P~-~d~~v~~LY~~~k~ 80 (95)
|||.| ..+. .++.|.+++..|+.
T Consensus 8 lfV~n-Lp~~~te~~L~~~F~~~G~ 31 (115)
T 4f25_A 8 IFIKN-LDKSIDNKALYDTFSAFGN 31 (115)
T ss_dssp EEEES-CCTTCCHHHHHHHHGGGSC
T ss_pred EEECC-CCCCCCHHHHHHHHhccCC
Confidence 78988 3333 34466677777764
No 147
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=22.11 E-value=94 Score=19.28 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=13.7
Q ss_pred EEEcCccCC--CcccHHHHHHHHhCC
Q 034423 57 VYVNSAFSP--NPDELVIDLYNNFGF 80 (95)
Q Consensus 57 lyVnn~f~P--~~d~~v~~LY~~~k~ 80 (95)
|||.| +| ..++.+.+|+..|+.
T Consensus 24 l~V~N--Lp~~~te~~L~~lF~~fG~ 47 (100)
T 3r27_A 24 VHIRG--LIDGVVEADLVEALQEFGP 47 (100)
T ss_dssp EEEES--CCTTCCHHHHHHHHGGGSC
T ss_pred EEEeC--CCCCCCHHHHHHHHhccCC
Confidence 77777 34 344566777777764
No 148
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=21.90 E-value=1.2e+02 Score=19.07 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=30.0
Q ss_pred CCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcC
Q 034423 23 APILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNS 61 (95)
Q Consensus 23 ~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn 61 (95)
.|..++.+.+|.++.++.+++.--+++. ..+.--|.=|+
T Consensus 16 ~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~ 56 (90)
T 2al3_A 16 APNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQR 56 (90)
T ss_dssp CTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETT
T ss_pred cCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCC
Confidence 4667889999999999999999988888 33444444444
No 149
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=21.81 E-value=2.7e+02 Score=21.24 Aligned_cols=53 Identities=9% Similarity=0.231 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhc--CCceEEEEEcCc----cCCCcccHHHHHHHHhCC---CCEEEEEecCC
Q 034423 39 FAKVIEFLCRHL--GRETLFVYVNSA----FSPNPDELVIDLYNNFGF---DGKLIVNYACS 91 (95)
Q Consensus 39 ~~~~~~~LRk~L--~~~slFlyVnn~----f~P~~d~~v~~LY~~~k~---dG~Lyi~Ys~~ 91 (95)
...+-.+|++++ +.+.+.+..|.. -.|.-+..+..|-+-.+. ++.|++.||+-
T Consensus 77 A~~m~~~L~~~~Gf~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~a~pgD~llfYFSGH 138 (350)
T 4f6o_A 77 AHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKDAQPNDSLFLHYSGH 138 (350)
T ss_dssp HHHHHHHHHHHSCCCGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTTCCTTCEEEEEEESC
T ss_pred HHHHHHHHHHhcCCCccceeeecccccccccCCCHHHHHHHHHHHHHhCCCCCEEEEEEcCC
Confidence 456667788776 666788888753 125555555555443333 78999999874
No 150
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=21.57 E-value=1.5e+02 Score=18.22 Aligned_cols=55 Identities=5% Similarity=0.048 Sum_probs=36.6
Q ss_pred eeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEEEe
Q 034423 29 AKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIVNY 88 (95)
Q Consensus 29 ~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi~Y 88 (95)
..+.|+.+.|+++|-..|..+. +.+..-|+.++.. ...+.++++ |+. +..|++..
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~-L~D~~tL~~----y~i~~g~~i~lv~ 106 (115)
T 1we7_A 48 LVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIF-IKDSNSLAY----YNMASGAVIHLAL 106 (115)
T ss_dssp EEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEE-ECTTSBHHH----HTCCSSCEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEE-CCCCCCHHH----CCCCCCCEEEEEE
Confidence 3478999999999999998887 4444445556653 345556665 343 55666654
No 151
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=21.19 E-value=56 Score=19.33 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=14.6
Q ss_pred EEEEcCccCCC--------cccHHHHHHHHhCC
Q 034423 56 FVYVNSAFSPN--------PDELVIDLYNNFGF 80 (95)
Q Consensus 56 FlyVnn~f~P~--------~d~~v~~LY~~~k~ 80 (95)
-|||+| +|. ..+.+.+++..|+.
T Consensus 8 ~vfV~n--Lp~v~~~~~~~~~~~L~~~F~~~G~ 38 (100)
T 3ns6_A 8 YIVVNG--APVIPSAKVPVLKKALTSLFSKAGK 38 (100)
T ss_dssp EEEEES--CCCCBGGGHHHHHHHHHHHHHTTSC
T ss_pred EEEEeC--CCcCChHHHHHHHHHHHHHHHhcCC
Confidence 488998 575 22356666776663
No 152
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=21.08 E-value=1e+02 Score=23.12 Aligned_cols=47 Identities=6% Similarity=-0.020 Sum_probs=33.8
Q ss_pred CchHHHHHHHHHhhcCCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEEEecCC
Q 034423 36 SDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIVNYACS 91 (95)
Q Consensus 36 ~~t~~~~~~~LRk~L~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi~Ys~~ 91 (95)
+.+..+|...|++.- . . .+.+|++. .+.++|+.... |..|+|+.|+.
T Consensus 78 ~i~~~efy~~m~~~~----~---p-~TSqPs~~-~~~~~f~~l~~~g~~Ii~I~iSS~ 126 (320)
T 3pl5_A 78 RLTSRVLLEKIAAGS----K---P-TTSQVNVG-QFESYFRQSAENGQEVLYIAFSSV 126 (320)
T ss_dssp CCCHHHHHHHHHTTC----C---C-EEECCCHH-HHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CcCHHHHHHHHhcCC----C---C-ccCCCCHH-HHHHHHHHHHHCCCeEEEEecCch
Confidence 378899999887631 1 1 23378886 77888888754 78999998874
No 153
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=20.63 E-value=89 Score=23.14 Aligned_cols=23 Identities=4% Similarity=0.081 Sum_probs=21.2
Q ss_pred eeEEecCCchHHHHHHHHHhhcC
Q 034423 29 AKFKISGSDKFAKVIEFLCRHLG 51 (95)
Q Consensus 29 ~KflV~~~~t~~~~~~~LRk~L~ 51 (95)
++....+++|+++....||.+++
T Consensus 15 ~~~~f~~~~~v~~~~~~i~e~~~ 37 (371)
T 3ivf_A 15 KTMQFEPSTMVYDACRMIRERIP 37 (371)
T ss_dssp EEEEECTTCBHHHHHHHHHTTCG
T ss_pred EEEEECCCCCHHHHHHHHHHhcc
Confidence 56899999999999999999994
No 154
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=20.27 E-value=1.2e+02 Score=18.29 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=19.7
Q ss_pred eeeeeEEecCC-chHHHHHHHHHhhc-C-CceEEEEE
Q 034423 26 LKQAKFKISGS-DKFAKVIEFLCRHL-G-RETLFVYV 59 (95)
Q Consensus 26 L~k~KflV~~~-~t~~~~~~~LRk~L-~-~~slFlyV 59 (95)
+.++.|...-+ ..+.++..-|++-+ + +|++++|-
T Consensus 32 vQ~SVFe~~lt~~~~~~L~~~L~~~id~~~Dsv~iy~ 68 (90)
T 1zpw_X 32 VQLSVFECYLDERLLEDLRRRARRLLDLGQDALRIYP 68 (90)
T ss_dssp EETTEEEEEECHHHHHHHHHHHHHHCCTTTCEEEEEE
T ss_pred ceEeEEEEEcCHHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 44555665444 34555555666666 3 57777775
No 155
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=20.20 E-value=1.6e+02 Score=17.94 Aligned_cols=71 Identities=4% Similarity=0.037 Sum_probs=41.7
Q ss_pred cEEEEeeeCCCCCceeeeeEEecC-CchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEE
Q 034423 12 KVVVHFRATGGAPILKQAKFKISG-SDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIV 86 (95)
Q Consensus 12 KV~v~~~~~g~~P~L~k~KflV~~-~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi 86 (95)
-+.|.++... .+.=+.-.+.|++ +.|++++-..|..+. +.+..-|+.++. ....+.+++ .|+. +..|++
T Consensus 27 ~i~i~Vk~~~-~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk-~L~D~~tL~----~y~I~~g~~l~l 100 (111)
T 1we6_A 27 PATIRVSKPN-ENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAG-FLKDNMSLA----HYNVGAGEILTL 100 (111)
T ss_dssp CEEEEECCTT-CSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSS-BCCTTSBTT----TTTCSSSCEEEE
T ss_pred cEEEEEEecc-cCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCE-ECCCCCcHH----HCCCCCCCEEEE
Confidence 4666666431 1111223478998 999999999998887 433444455664 334444554 3444 556666
Q ss_pred Ee
Q 034423 87 NY 88 (95)
Q Consensus 87 ~Y 88 (95)
..
T Consensus 101 ~~ 102 (111)
T 1we6_A 101 SL 102 (111)
T ss_dssp EC
T ss_pred EE
Confidence 54
No 156
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=20.15 E-value=1.2e+02 Score=21.98 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=33.5
Q ss_pred CCchHHHHHHHHHhh-cCCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEEEecCC
Q 034423 35 GSDKFAKVIEFLCRH-LGRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIVNYACS 91 (95)
Q Consensus 35 ~~~t~~~~~~~LRk~-L~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi~Ys~~ 91 (95)
.+.+..+|...+++. +|.. .+|++. .+.++|+.... +..|+|+.|+.
T Consensus 43 ~di~~~efy~~~~~~~~p~T---------Sqps~~-~~~~~f~~l~~~g~~ii~i~iSs~ 92 (289)
T 1pzx_A 43 ITIEPKQVYDAMRQGHTVKT---------AQPSPL-AMKELFLPYAKENRPCLYIAFSSK 92 (289)
T ss_dssp TTBCHHHHHHHHTTTCCCEE---------ECCCHH-HHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCCHHHHHHHHHhCCCCee---------CCCCHH-HHHHHHHHHHhCCCeEEEEECCCc
Confidence 467888999888642 3332 368887 57788887744 67999998864
No 157
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=20.06 E-value=61 Score=18.58 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=26.5
Q ss_pred HHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEE
Q 034423 40 AKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLI 85 (95)
Q Consensus 40 ~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Ly 85 (95)
..+...|.+.| +.+.+|+-|.. .|..+... +|..-.. ++.||
T Consensus 22 ~~l~~~l~~~lgip~~~v~V~i~e--~~~~~w~~--v~~~~~~~~~~~l~ 67 (76)
T 1gyx_A 22 ADITDVIIRHLNSKDSSISIALQQ--IQPESWQA--IWDAEIAPQMEALI 67 (76)
T ss_dssp HHHHHHHHHHHTCCGGGCEEEEEE--CCGGGHHH--HHHHTTTTTTTTCS
T ss_pred HHHHHHHHHHhCcCCceEEEEEEE--eChHHEEE--EEchhhccChhhee
Confidence 34555555655 77899999877 46666655 7754333 55554
No 158
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=20.03 E-value=86 Score=19.55 Aligned_cols=56 Identities=9% Similarity=0.086 Sum_probs=37.5
Q ss_pred eeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEEEec
Q 034423 29 AKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIVNYA 89 (95)
Q Consensus 29 ~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi~Ys 89 (95)
..+.|+.+.|++++-..|..+. +.+..-|+.++.. ...+.++++ |+. +..|++...
T Consensus 22 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~-L~D~~tL~~----ygI~~gstI~l~~~ 81 (114)
T 2kdi_A 22 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQ-LEDGRTLSD----YNIQRESTLHLVLR 81 (114)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEE-CCTTCBTTT----TTCCSSCEEEEEEC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEE-CCCCCcHHH----CCCCCCCEEEEEEE
Confidence 3467899999999999998887 5555556667653 344555543 343 556776653
Done!