BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034424
         (95 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8NFA0|UBP32_HUMAN Ubiquitin carboxyl-terminal hydrolase 32 OS=Homo sapiens GN=USP32
            PE=1 SV=1
          Length = 1604

 Score = 30.4 bits (67), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 22/43 (51%)

Query: 11   RSSLSSIKSAFRSNAPKSPTAASAPFPLPTKSSPSPLRRFSLS 53
            R S+S    AF    P SP +AS+P      SSPS    F+L+
Sbjct: 985  RLSVSGFLCAFEIPVPVSPISASSPTQTDFSSSPSTNEMFTLT 1027


>sp|B1ZNE9|RS10_OPITP 30S ribosomal protein S10 OS=Opitutus terrae (strain DSM 11246 /
          PB90-1) GN=rpsJ PE=3 SV=1
          Length = 102

 Score = 30.4 bits (67), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 10/51 (19%)

Query: 6  HRFIRRSSLSSIKSAFRSNAPKSPTAASAPFPLPTKSSPSPLRRFSLSRSP 56
          +R I +S+L  +++A RS A       S P PLPT+     + + S++RSP
Sbjct: 15 YRVIDQSALEIVETAKRSGA-----RVSGPIPLPTR-----VEKLSVNRSP 55


>sp|A6H6W9|SDS3_BOVIN Sin3 histone deacetylase corepressor complex component SDS3 OS=Bos
           taurus GN=SUDS3 PE=2 SV=1
          Length = 328

 Score = 30.0 bits (66), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 14  LSSIKSAFRSNAPKSPTAASAPFPLPTKSSPSPLRRF 50
           +  +++  +  +PK P + S+P  LPT  + SP +RF
Sbjct: 217 MEDLRTLNKLKSPKRPASPSSPEHLPTTPAESPAQRF 253


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.120    0.342 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,808,174
Number of Sequences: 539616
Number of extensions: 927463
Number of successful extensions: 6526
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 6379
Number of HSP's gapped (non-prelim): 184
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)