Query 034424
Match_columns 95
No_of_seqs 103 out of 119
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 03:43:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034424.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034424hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k1aa_ d.211.1.1 (A:) bcl-3 { 4.7 1.2E+02 0.0088 16.9 1.0 10 65-74 4-13 (228)
2 d2pf5a1 d.169.1.4 (A:1-95) TSG 3.4 1.3E+02 0.0098 17.7 0.4 15 81-95 42-56 (95)
3 d2o3aa1 c.116.1.8 (A:1-167) Un 3.2 70 0.0051 21.6 -1.3 16 75-90 16-31 (167)
4 d1myoa_ d.211.1.1 (A:) Myotrop 3.0 2E+02 0.014 15.8 0.8 12 63-74 67-78 (118)
5 d1iknd_ d.211.1.1 (D:) I-kappa 2.8 2.3E+02 0.017 16.7 1.0 12 63-74 38-49 (221)
6 d1p65a_ d.254.1.1 (A:) Arteriv 2.7 3E+02 0.022 15.2 1.4 16 61-76 40-55 (57)
7 d1b12a_ b.87.1.2 (A:) Type 1 s 2.4 1.2E+02 0.0091 19.3 -0.8 10 83-92 203-212 (247)
8 d2fo1e1 d.211.1.1 (E:1021-1297 2.3 2.6E+02 0.019 16.6 0.8 11 64-74 33-43 (277)
9 d1ycsb1 d.211.1.1 (B:327-456) 2.2 2.8E+02 0.021 15.4 0.8 11 64-74 67-77 (130)
10 d1ihba_ d.211.1.1 (A:) p18ink4 2.2 3.1E+02 0.023 14.8 1.0 8 67-74 4-11 (156)
No 1
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.73 E-value=1.2e+02 Score=16.89 Aligned_cols=10 Identities=40% Similarity=0.464 Sum_probs=7.5
Q ss_pred cchhHHHHHH
Q 034424 65 LLPLHSVVAA 74 (95)
Q Consensus 65 llPLHsAvAs 74 (95)
..|||.|+..
T Consensus 4 ~TpLh~A~~~ 13 (228)
T d1k1aa_ 4 DTPLHIAVVQ 13 (228)
T ss_dssp CCHHHHHHHT
T ss_pred ccHHHHHHHc
Confidence 4689988864
No 2
>d2pf5a1 d.169.1.4 (A:1-95) TSG-6, Link module {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.43 E-value=1.3e+02 Score=17.70 Aligned_cols=15 Identities=7% Similarity=0.116 Sum_probs=11.3
Q ss_pred cccccccceeccCCC
Q 034424 81 LSAASKSCRALSQGT 95 (95)
Q Consensus 81 Ls~~~~s~~~Lsqg~ 95 (95)
.+.+--.+|||.+|+
T Consensus 42 ~G~~~C~~GWl~d~~ 56 (95)
T d2pf5a1 42 IGFHVCAAGWMAKGR 56 (95)
T ss_dssp TTCCCCSCEECGGGE
T ss_pred cCcccccccccCCCe
Confidence 457778889998763
No 3
>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.23 E-value=70 Score=21.58 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=12.6
Q ss_pred HHhhhcccccccccee
Q 034424 75 ARMTSCLSAASKSCRA 90 (95)
Q Consensus 75 ArltS~Ls~~~~s~~~ 90 (95)
-|+|.|++...|++|+
T Consensus 16 ~RiTTHvaLtARAfGA 31 (167)
T d2o3aa1 16 KRISTHVALTARAFGA 31 (167)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHhcC
Confidence 3788888888888775
No 4
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.97 E-value=2e+02 Score=15.82 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=8.7
Q ss_pred cccchhHHHHHH
Q 034424 63 QSLLPLHSVVAA 74 (95)
Q Consensus 63 ~SllPLHsAvAs 74 (95)
+..-|||.|+..
T Consensus 67 ~g~tpLh~A~~~ 78 (118)
T d1myoa_ 67 HHITPLLSAVYE 78 (118)
T ss_dssp SCSCHHHHHHTT
T ss_pred ccccchhhhhhc
Confidence 456799988754
No 5
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.77 E-value=2.3e+02 Score=16.75 Aligned_cols=12 Identities=33% Similarity=0.404 Sum_probs=9.3
Q ss_pred cccchhHHHHHH
Q 034424 63 QSLLPLHSVVAA 74 (95)
Q Consensus 63 ~SllPLHsAvAs 74 (95)
+...|||.|+..
T Consensus 38 ~g~TpLh~A~~~ 49 (221)
T d1iknd_ 38 LQQTPLHLAVIT 49 (221)
T ss_dssp TCCCHHHHHHHT
T ss_pred CCCccccccccc
Confidence 456799999875
No 6
>d1p65a_ d.254.1.1 (A:) Arterivirus nucleocapsid protein {PRRSV (Porcine reproductive and respiratory syndrome virus) [TaxId: 28344]}
Probab=2.67 E-value=3e+02 Score=15.17 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=11.7
Q ss_pred cccccchhHHHHHHHH
Q 034424 61 CAQSLLPLHSVVAAAR 76 (95)
Q Consensus 61 ~~~SllPLHsAvAsAr 76 (95)
-||=|||-|..|=.-|
T Consensus 40 ~VeFmLP~~hTVRLIr 55 (57)
T d1p65a_ 40 TVEFSLPTHHTVRLIR 55 (57)
T ss_dssp EEEECCCHHHHHHHHH
T ss_pred EEEEEcccceEEEEEe
Confidence 4788999998775433
No 7
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}
Probab=2.39 E-value=1.2e+02 Score=19.28 Aligned_cols=10 Identities=20% Similarity=0.102 Sum_probs=4.2
Q ss_pred cccccceecc
Q 034424 83 AASKSCRALS 92 (95)
Q Consensus 83 ~~~~s~~~Ls 92 (95)
.|+|-||-++
T Consensus 203 ~DSR~wG~Vp 212 (247)
T d1b12a_ 203 ADSRYWGFVP 212 (247)
T ss_dssp CCHHHHCCEE
T ss_pred ccccccCcCC
Confidence 3444444433
No 8
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}
Probab=2.34 E-value=2.6e+02 Score=16.62 Aligned_cols=11 Identities=18% Similarity=0.193 Sum_probs=8.2
Q ss_pred ccchhHHHHHH
Q 034424 64 SLLPLHSVVAA 74 (95)
Q Consensus 64 SllPLHsAvAs 74 (95)
-.-|||.|+..
T Consensus 33 g~T~Lh~A~~~ 43 (277)
T d2fo1e1 33 NRTVLHWIASN 43 (277)
T ss_dssp CCCHHHHHHCT
T ss_pred CccHHHHHHHc
Confidence 45699998764
No 9
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.19 E-value=2.8e+02 Score=15.35 Aligned_cols=11 Identities=27% Similarity=0.543 Sum_probs=7.8
Q ss_pred ccchhHHHHHH
Q 034424 64 SLLPLHSVVAA 74 (95)
Q Consensus 64 SllPLHsAvAs 74 (95)
-..|||.|+-.
T Consensus 67 g~tpLh~A~~~ 77 (130)
T d1ycsb1 67 GWTPLHCAASC 77 (130)
T ss_dssp CCCHHHHHHHT
T ss_pred Ccccccccchh
Confidence 45699988643
No 10
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.17 E-value=3.1e+02 Score=14.84 Aligned_cols=8 Identities=38% Similarity=0.289 Sum_probs=4.3
Q ss_pred hhHHHHHH
Q 034424 67 PLHSVVAA 74 (95)
Q Consensus 67 PLHsAvAs 74 (95)
|||.|+..
T Consensus 4 ~Lh~Aa~~ 11 (156)
T d1ihba_ 4 ELASAAAR 11 (156)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 45655544
Done!