BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034427
         (95 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
          Transcription Factor From Antirrhinum Majus
          Length = 93

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/96 (56%), Positives = 72/96 (75%), Gaps = 4/96 (4%)

Query: 1  MASGSLSST-WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDD 59
          MAS   S   W+ KENK FE+ALA+YDK+TPDRW N+A+AV  G+T EEVKKHYEILV+D
Sbjct: 1  MASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILVED 59

Query: 60 LNRIEAGRVPIPNYKSPGSSYNAANEERILKNLKLQ 95
          +  IE+G+VP PNY++ G   N   +E+  +NLK++
Sbjct: 60 IKYIESGKVPFPNYRTTGG--NMKTDEKRFRNLKIR 93


>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
          F-Hb80.4 In Complex With The 1918 Influenza Virus
          Hemagglutinin.
 pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
          F-Hb80.4 In Complex With The 1918 Influenza Virus
          Hemagglutinin.
 pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
          F-Hb80.4 In Complex With The 1918 Influenza Virus
          Hemagglutinin
          Length = 74

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 1/46 (2%)

Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEI 55
          W   EN  FE AL+  +K+TPDRW+ +A+ V  G+T EEVKKHYE+
Sbjct: 23 WKFSENIAFEIALSFTNKDTPDRWKKVAQYV-KGRTPEEVKKHYEL 67


>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human
          Dnajc2, Northeast Structural Genomics Consortium Target
          Hr8254a
          Length = 73

 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVP 69
          WT +E KL E+AL  Y   TP+RW+ IA+AV  G+T ++  K Y+ LV+ +   +A +  
Sbjct: 6  WTTEEQKLLEQALKTYPVNTPERWKKIAEAV-PGRTKKDCMKRYKELVEMVKAKKAAQEQ 64

Query: 70 IPN 72
          + N
Sbjct: 65 VLN 67


>pdb|2CQR|A Chain A, Solution Structure Of Rsgi Ruh-043, A Myb Dna-Binding
          Domain In Human Cdna
          Length = 73

 Score = 34.7 bits (78), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILV 57
          WT  + KL E AL  Y + + D W  IA+ V   K+ E+    Y++LV
Sbjct: 21 WTQNQQKLLELALQQYPRGSSDCWDKIARCV-PSKSKEDCIARYKLLV 67


>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
          Protein
          Length = 72

 Score = 31.2 bits (69), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 5/43 (11%)

Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKH 52
          WT +E +LFE+ LA + +    RW  I+K + G +TV +VK +
Sbjct: 12 WTIEEKELFEQGLAKFGR----RWTKISKLI-GSRTVLQVKSY 49


>pdb|2DIN|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
          Human Cell Division Cycle 5-Like Protein
          Length = 66

 Score = 30.0 bits (66), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 19 EKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAG 66
          E+ L    K  P +W+ IA  +G  +T  +  +HYE L+D   + ++G
Sbjct: 17 EEKLLHLAKLMPTQWRTIAPIIG--RTAAQCLEHYEFLLDKAAQRDSG 62


>pdb|1RER|A Chain A, Crystal Structure Of The Homotrimer Of Fusion Glycoprotein
           E1 From Semliki Forest Virus.
 pdb|1RER|B Chain B, Crystal Structure Of The Homotrimer Of Fusion Glycoprotein
           E1 From Semliki Forest Virus.
 pdb|1RER|C Chain C, Crystal Structure Of The Homotrimer Of Fusion Glycoprotein
           E1 From Semliki Forest Virus.
 pdb|2ALA|A Chain A, Crystal Structure Of The Semliki Forest Virus Envelope
           Protein E1 In Its Monomeric Conformation
          Length = 391

 Score = 29.6 bits (65), Expect = 0.47,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 13/80 (16%)

Query: 4   GSLSSTWTPKENKL-------FEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEIL 56
           G LSS WTP +NK+       F +    Y    P R+ +I       +TVE     Y   
Sbjct: 164 GPLSSAWTPFDNKIVVYKDEVFNQDFPPYGSGQPGRFGDIQS-----RTVES-NDLYANT 217

Query: 57  VDDLNRIEAGRVPIPNYKSP 76
              L R   G V +P  ++P
Sbjct: 218 ALKLARPSPGMVHVPYTQTP 237


>pdb|1I9W|A Chain A, Crystal Structure Of The Fusion Glycoprotein E1 From
           Semliki Forest Virus
          Length = 390

 Score = 29.6 bits (65), Expect = 0.47,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 13/80 (16%)

Query: 4   GSLSSTWTPKENKL-------FEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEIL 56
           G LSS WTP +NK+       F +    Y    P R+ +I       +TVE     Y   
Sbjct: 164 GPLSSAWTPFDNKIVVYKDEVFNQDFPPYGSGQPGRFGDIQS-----RTVES-NDLYANT 217

Query: 57  VDDLNRIEAGRVPIPNYKSP 76
              L R   G V +P  ++P
Sbjct: 218 ALKLARPSPGMVHVPYTQTP 237


>pdb|1WGX|A Chain A, Solution Structure Of Rsgi Ruh-022, A Myb Dna-Binding
          Domain In Human Cdna
          Length = 73

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHY 53
          W  KE +    A A   K  P  W  +A AV G ++ EE ++ Y
Sbjct: 11 WNEKELQKLHCAFASLPKHKPGFWSEVAAAV-GSRSPEECQRKY 53


>pdb|2YDT|A Chain A, Structure Of The Alpha-L-Arabinofuranosidase Arb93a From
          Fusarium Graminearum In Complexe With An Iminosugar
          Inhibitor
          Length = 367

 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 12/51 (23%)

Query: 1  MASGSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKK 51
          ++ G+L  TW   EN         Y  E P+ W  I K+  GGKT +E+ K
Sbjct: 36 LSDGTLLGTW---EN---------YSPEPPNVWFPIVKSKDGGKTWKEISK 74


>pdb|2W5N|A Chain A, Native Structure Of The Gh93 Alpha-L-Arabinofuranosidase
          Of Fusarium Graminearum
          Length = 367

 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 12/51 (23%)

Query: 1  MASGSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKK 51
          ++ G+L  TW   EN         Y  E P+ W  I K+  GGKT +E+ K
Sbjct: 36 LSDGTLLGTW---EN---------YSPEPPNVWFPIVKSKDGGKTWKEISK 74


>pdb|2YDP|A Chain A, Structure Of The E242a Mutant Of The
          Alpha-L-Arabinofuranosidase Arb93a From Fusarium
          Graminearum In Complex With An Iminosugar Inhibitor
 pdb|2YDP|B Chain B, Structure Of The E242a Mutant Of The
          Alpha-L-Arabinofuranosidase Arb93a From Fusarium
          Graminearum In Complex With An Iminosugar Inhibitor
 pdb|2YDP|C Chain C, Structure Of The E242a Mutant Of The
          Alpha-L-Arabinofuranosidase Arb93a From Fusarium
          Graminearum In Complex With An Iminosugar Inhibitor
          Length = 367

 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 12/51 (23%)

Query: 1  MASGSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKK 51
          ++ G+L  TW   EN         Y  E P+ W  I K+  GGKT +E+ K
Sbjct: 36 LSDGTLLGTW---EN---------YSPEPPNVWFPIVKSKDGGKTWKEISK 74


>pdb|2Y9Z|A Chain A, Chromatin Remodeling Factor Isw1a(Del_atpase) In Dna
           Complex
          Length = 374

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 15  NKL-FEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIE 64
           NKL F K + +  K   +  Q IA+ +  GKT+EEV+ + +    ++ RIE
Sbjct: 127 NKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIE 177


>pdb|2W5O|A Chain A, Complex Structure Of The Gh93
          Alpha-L-Arabinofuranosidase Of Fusarium Graminearum
          With Arabinobiose
          Length = 367

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 12/51 (23%)

Query: 1  MASGSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKK 51
          ++ G+L  TW   EN         Y  E P+ W  I K+  GGKT +E+ K
Sbjct: 36 LSDGTLLGTW---EN---------YSPEPPNVWFPIVKSKDGGKTWKEISK 74


>pdb|2Y9Y|A Chain A, Chromatin Remodeling Factor Isw1a(Del_atpase)
          Length = 374

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 15  NKL-FEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIE 64
           NKL F K + +  K   +  Q IA+ +  GKT+EEV+ + +    ++ RIE
Sbjct: 127 NKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIE 177


>pdb|2CQQ|A Chain A, Solution Structure Of Rsgi Ruh-037, A Myb Dna-Binding
          Domain In Human Cdna
          Length = 72

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61
          WT ++     +++  +   TP RW+ IA  +  G++V +V    + L D + 
Sbjct: 11 WTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDSVT 60


>pdb|2XFC|A Chain A, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
           Into The Semliki Forest Virus Cryo-Em Map
 pdb|2XFC|D Chain D, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
           Into The Semliki Forest Virus Cryo-Em Map
 pdb|2XFC|F Chain F, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
           Into The Semliki Forest Virus Cryo-Em Map
 pdb|2XFC|H Chain H, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
           Into The Semliki Forest Virus Cryo-Em Map
          Length = 439

 Score = 27.3 bits (59), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 4   GSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKT-VEEVKKHYEILVDDLNR 62
           G +SS WTP +NK+      +Y+ + P          G  ++   E K  Y      L R
Sbjct: 164 GPMSSAWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFGDIQSRTPESKDVYANTQLVLQR 223

Query: 63  IEAGRVPIPNYKSP 76
             AG V +P  ++P
Sbjct: 224 PAAGTVHVPYSQAP 237


>pdb|3OT5|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Putative
           Udp-N- Acetylglucosamine 2-Epimerase From Listeria
           Monocytogenes
 pdb|3OT5|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Putative
           Udp-N- Acetylglucosamine 2-Epimerase From Listeria
           Monocytogenes
 pdb|3OT5|C Chain C, 2.2 Angstrom Resolution Crystal Structure Of Putative
           Udp-N- Acetylglucosamine 2-Epimerase From Listeria
           Monocytogenes
 pdb|3OT5|D Chain D, 2.2 Angstrom Resolution Crystal Structure Of Putative
           Udp-N- Acetylglucosamine 2-Epimerase From Listeria
           Monocytogenes
          Length = 403

 Score = 27.3 bits (59), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 3   SGSLSSTWTPKENKLFEKALALYD-KETPDRWQNIAKAVGGG----KTVEEVKKHYE 54
           +G+L    T KEN L ++AL L D KE+ D+    A   G G    + +  +K H+E
Sbjct: 338 AGTLKLIGTNKEN-LIKEALDLLDNKESHDKMAQAANPYGDGFAANRILAAIKSHFE 393


>pdb|3N40|F Chain F, Crystal Structure Of The Immature Envelope Glycoprotein
           Complex Of Chikungunya Virus
          Length = 393

 Score = 26.9 bits (58), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 4   GSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKT-VEEVKKHYEILVDDLNR 62
           G +SS WTP +NK+      +Y+ + P          G  ++   E K  Y      L R
Sbjct: 166 GPMSSAWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFGDIQSRTPESKDVYANTQLVLQR 225

Query: 63  IEAGRVPIPNYKSP 76
             AG V +P  ++P
Sbjct: 226 PAAGTVHVPYSQAP 239


>pdb|2XFB|A Chain A, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
           Into The Sindbis Virus Cryo-Em Map
 pdb|2XFB|D Chain D, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
           Into The Sindbis Virus Cryo-Em Map
 pdb|2XFB|F Chain F, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
           Into The Sindbis Virus Cryo-Em Map
 pdb|2XFB|H Chain H, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
           Into The Sindbis Virus Cryo-Em Map
          Length = 391

 Score = 26.9 bits (58), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 4   GSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKT-VEEVKKHYEILVDDLNR 62
           G +SS WTP +NK+      +Y+ + P          G  ++   E K  Y      L R
Sbjct: 164 GPMSSAWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFGDIQSRTPESKDVYANTQLVLQR 223

Query: 63  IEAGRVPIPNYKSP 76
             AG V +P  ++P
Sbjct: 224 PAAGTVHVPYSQAP 237


>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
          Spcc24b10.08c Protein
          Length = 58

 Score = 26.9 bits (58), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 33 WQNIAKAVGGGKTVEEVKKHY 53
          W +IA  VG  +T EE + HY
Sbjct: 32 WADIADYVGNARTKEECRDHY 52


>pdb|3AIB|A Chain A, Crystal Structure Of Glucansucrase
 pdb|3AIB|B Chain B, Crystal Structure Of Glucansucrase
 pdb|3AIB|C Chain C, Crystal Structure Of Glucansucrase
 pdb|3AIB|D Chain D, Crystal Structure Of Glucansucrase
 pdb|3AIB|G Chain G, Crystal Structure Of Glucansucrase
 pdb|3AIB|E Chain E, Crystal Structure Of Glucansucrase
 pdb|3AIB|F Chain F, Crystal Structure Of Glucansucrase
 pdb|3AIB|H Chain H, Crystal Structure Of Glucansucrase
 pdb|3AIC|A Chain A, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIC|B Chain B, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIC|C Chain C, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIC|D Chain D, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIC|E Chain E, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIC|F Chain F, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIC|G Chain G, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIC|H Chain H, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIE|A Chain A, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIE|B Chain B, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIE|C Chain C, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIE|D Chain D, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIE|E Chain E, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIE|F Chain F, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIE|G Chain G, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
 pdb|3AIE|H Chain H, Crystal Structure Of Glucansucrase From Streptococcus
           Mutans
          Length = 844

 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 25  YDKETPDRWQNIAKA------VGGGKTVEEVKKHYEILVDDL 60
           +D E  D  ++I KA      VG   T+EE+KK +EI   DL
Sbjct: 344 HDSEVQDLIRDIIKAEINPNVVGYSFTMEEIKKAFEIYNKDL 385


>pdb|3N41|F Chain F, Crystal Structure Of The Mature Envelope Glycoprotein
           Complex (Spontaneous Cleavage) Of Chikungunya Virus.
 pdb|3N42|F Chain F, Crystal Structures Of The Mature Envelope Glycoprotein
           Complex (Furin Cleavage) Of Chikungunya Virus.
 pdb|3N43|F Chain F, Crystal Structures Of The Mature Envelope Glycoprotein
           Complex (Trypsin Cleavage) Of Chikungunya Virus.
 pdb|3N44|F Chain F, Crystal Structure Of The Mature Envelope Glycoprotein
           Complex (Trypsin Cleavage; Osmium Soak) Of Chikungunya
           Virus
          Length = 473

 Score = 26.9 bits (58), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 4   GSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKT-VEEVKKHYEILVDDLNR 62
           G +SS WTP +NK+      +Y+ + P          G  ++   E K  Y      L R
Sbjct: 186 GPMSSAWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFGDIQSRTPESKDVYANTQLVLQR 245

Query: 63  IEAGRVPIPNYKSP 76
             AG V +P  ++P
Sbjct: 246 PAAGTVHVPYSQAP 259


>pdb|2O1C|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
          Pyrophosphohydrolase
 pdb|2O1C|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
          Pyrophosphohydrolase
 pdb|2O1C|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
          Pyrophosphohydrolase
 pdb|2O1C|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
          Pyrophosphohydrolase
 pdb|2O5W|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
          Pyrophosphohydrolase In Complex With Sm+3 And
          Pyrophosphate
 pdb|2O5W|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
          Pyrophosphohydrolase In Complex With Sm+3 And
          Pyrophosphate
 pdb|2O5W|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
          Pyrophosphohydrolase In Complex With Sm+3 And
          Pyrophosphate
 pdb|2O5W|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
          Pyrophosphohydrolase In Complex With Sm+3 And
          Pyrophosphate
          Length = 150

 Score = 25.8 bits (55), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 7/55 (12%)

Query: 20 KALALYDKETPDRWQNIAKAVGGGKT-----VEEVKKHY--EILVDDLNRIEAGR 67
          + L L  ++ PD WQ++  +V  G+T     + EVK+    +++ + L  I+  R
Sbjct: 23 RVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQR 77


>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
          Length = 787

 Score = 25.4 bits (54), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 8   STWTPKENKLFEKALALYDKETPDRWQNI 36
           S  T  ENK F+KA++L D E  + ++N 
Sbjct: 347 SVATAIENKDFDKAISLRDTEFIELYENF 375


>pdb|2A4A|A Chain A, Deoxyribose-Phosphate Aldolase From P. Yoelii
 pdb|2A4A|B Chain B, Deoxyribose-Phosphate Aldolase From P. Yoelii
          Length = 281

 Score = 25.4 bits (54), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 2   ASGSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEIL 56
           ++G +    TP   +   KA+  Y K  P++   I   V GG +      HY +L
Sbjct: 192 STGKVQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILL 246


>pdb|2DO6|A Chain A, Solution Structure Of Rsgi Ruh-065, A Uba Domain From
          Human Cdna
 pdb|2DO6|B Chain B, Solution Structure Of Rsgi Ruh-065, A Uba Domain From
          Human Cdna
          Length = 53

 Score = 25.4 bits (54), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 36 IAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVPIPNYKSPGS 78
          IAK +G G   EEVK+  EI     N +E  R  +  +  P S
Sbjct: 13 IAKLMGEGYAFEEVKRALEIA---QNNVEVARSILREFSGPSS 52


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.128    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,068,050
Number of Sequences: 62578
Number of extensions: 117267
Number of successful extensions: 327
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 36
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)