BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034427
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1A173|RADL6_ARATH Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1
Length = 97
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 77/98 (78%), Gaps = 5/98 (5%)
Query: 1 MASGSLSST--WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58
MAS S SS WT +NK+FE+ALA+YDK+TPDRW N+AKAV GGKTVEEVK+HY+ILV+
Sbjct: 1 MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVE 59
Query: 59 DLNRIEAGRVPIPNYKSPGSSYNAAN--EERILKNLKL 94
DL IE GRVP+PNYK+ S+ + N + R +KNLK+
Sbjct: 60 DLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97
>sp|F4JVB8|RADL1_ARATH Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1
Length = 100
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 68/88 (77%), Gaps = 3/88 (3%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVP 69
WT K+NK FE+ALA YD++TP+RWQN+AK V GGKT EEVK+HYE+LV D+N IE G VP
Sbjct: 14 WTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYELLVQDINSIENGHVP 72
Query: 70 IPNYKSPGSSYNA--ANEERILKNLKLQ 95
PNY++ G N + EE+ ++N++LQ
Sbjct: 73 FPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100
>sp|Q58FS3|RAD_ANTMA Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1
SV=1
Length = 93
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 72/96 (75%), Gaps = 4/96 (4%)
Query: 1 MASGSLSST-WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDD 59
MAS S W+ KENK FE+ALA+YDK+TPDRW N+A+AV G+T EEVKKHYEILV+D
Sbjct: 1 MASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILVED 59
Query: 60 LNRIEAGRVPIPNYKSPGSSYNAANEERILKNLKLQ 95
+ IE+G+VP PNY++ G N +E+ +NLK++
Sbjct: 60 IKYIESGKVPFPNYRTTGG--NMKTDEKRFRNLKIR 93
>sp|Q6NNN0|RADL3_ARATH Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1
Length = 81
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 61/71 (85%), Gaps = 1/71 (1%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVP 69
WT KENKLFE+ALA YD++TPDRW N+A+AV GGK+ EEV++HYE+L+ D+N IE+GR P
Sbjct: 12 WTRKENKLFERALATYDQDTPDRWHNVARAV-GGKSAEEVRRHYELLIRDVNDIESGRYP 70
Query: 70 IPNYKSPGSSY 80
PNY+S G+++
Sbjct: 71 HPNYRSNGNNH 81
>sp|Q9SIJ5|RADL2_ARATH Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1
Length = 101
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 66/89 (74%), Gaps = 4/89 (4%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVP 69
WT K+NK FE+ALA+YD++TPDRW N+A+AV GGKT EE K+ Y++LV D+ IE G VP
Sbjct: 14 WTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYDLLVRDIESIENGHVP 72
Query: 70 IPNYKSPGSSYNAA---NEERILKNLKLQ 95
P+YK+ + N +EE+ ++++KLQ
Sbjct: 73 FPDYKTTTGNSNRGRLRDEEKRMRSMKLQ 101
>sp|Q8GW75|RADL5_ARATH Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1
Length = 100
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 67/87 (77%), Gaps = 5/87 (5%)
Query: 13 KENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVPIPN 72
K+NK+FE+ALA+YDK+TPDRWQN+AKAV G K+ EEVK+HY+ILV+DL IE VP+P
Sbjct: 15 KQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILVEDLMNIEQDLVPLPK 73
Query: 73 YKS--PGSSYNAANEE--RILKNLKLQ 95
YK+ GS ++ R++KN+++Q
Sbjct: 74 YKTVDVGSKSRGIDDFDLRLMKNMRIQ 100
>sp|Q1G3C4|RADL4_ARATH Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1
Length = 77
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Query: 13 KENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVPIPN 72
+E+K FE ALA +DK+TPDRWQ IA+AV GGK+ EEVK+HYE+L+ D+N IE+GR P P
Sbjct: 14 REDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYELLLRDVNDIESGRYPQPR 72
Query: 73 YKS 75
Y++
Sbjct: 73 YRN 75
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus
GN=DIVARICATA PE=2 SV=1
Length = 307
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAG 66
++ WT ENK FE ALA++D+ TP+RW+ +A+ V GKTV +V + Y+ L DD++ IEAG
Sbjct: 23 TTRWTAAENKAFENALAVFDENTPNRWERVAERV-PGKTVGDVMRQYKELEDDVSSIEAG 81
Query: 67 RVPIPNYKS 75
VP+P Y +
Sbjct: 82 FVPVPGYST 90
>sp|P54103|DNJC2_MOUSE DnaJ homolog subfamily C member 2 OS=Mus musculus GN=Dnajc2 PE=1
SV=2
Length = 621
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAG 66
S+ WT +E KL E+AL Y TP+RW+ IA+AV G+T ++ + Y+ LV+ + +A
Sbjct: 551 STPWTTEEQKLLEQALKTYPVNTPERWEKIAEAV-PGRTKKDCMRRYKELVEMVKAKKAA 609
Query: 67 RVPIPN 72
+ + N
Sbjct: 610 QEQVLN 615
>sp|Q1RMH9|DNJC2_BOVIN DnaJ homolog subfamily C member 2 OS=Bos taurus GN=DNAJC2 PE=2 SV=1
Length = 621
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVP 69
WT +E KL E+AL Y TP+RW+ IA+AV G+T ++ K Y+ LV+ + +A +
Sbjct: 554 WTTEEQKLLEQALKTYPVNTPERWEKIAEAV-PGRTKKDCMKRYKELVEMVKAKKAAQEQ 612
Query: 70 IPN 72
+ N
Sbjct: 613 VLN 615
>sp|Q4R8H2|DNJC2_MACFA DnaJ homolog subfamily C member 2 OS=Macaca fascicularis GN=DNAJC2
PE=2 SV=1
Length = 621
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVP 69
WT +E KL E+AL Y TP+RW+ IA+AV G+T ++ K Y+ LV+ + +A +
Sbjct: 554 WTTEEQKLLEQALKTYPVNTPERWEKIAEAV-PGRTKKDCMKRYKELVEMVKAKKAAQEQ 612
Query: 70 IPN 72
+ N
Sbjct: 613 VLN 615
>sp|Q99543|DNJC2_HUMAN DnaJ homolog subfamily C member 2 OS=Homo sapiens GN=DNAJC2 PE=1
SV=4
Length = 621
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVP 69
WT +E KL E+AL Y TP+RW+ IA+AV G+T ++ K Y+ LV+ + +A +
Sbjct: 554 WTTEEQKLLEQALKTYPVNTPERWEKIAEAV-PGRTKKDCMKRYKELVEMVKAKKAAQEQ 612
Query: 70 IPN 72
+ N
Sbjct: 613 VLN 615
>sp|Q6P2Y3|DNJC2_XENTR DnaJ homolog subfamily C member 2 OS=Xenopus tropicalis GN=dnajc2
PE=2 SV=2
Length = 620
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGR 67
S WT +E KL E+AL Y TP+RW+ IA+AV G++ ++ K Y+ LV+ + +A +
Sbjct: 551 SPWTTEEQKLLEQALKTYPVNTPERWEKIAEAV-PGRSKKDCMKRYKELVEMVKAKKAAQ 609
Query: 68 VPIPN 72
+ N
Sbjct: 610 EQVLN 614
>sp|Q7TQ20|DNJC2_RAT DnaJ homolog subfamily C member 2 OS=Rattus norvegicus GN=Dnajc2
PE=2 SV=1
Length = 621
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVP 69
WT +E KL E+AL Y TP+RW+ IA+AV G+T ++ + Y+ LV+ + +A +
Sbjct: 554 WTTEEQKLLEQALKTYPVNTPERWEKIAEAV-PGRTKKDCMRRYKELVEMVKAKKAAQEQ 612
Query: 70 IPN 72
+ N
Sbjct: 613 VLN 615
>sp|Q6NWJ4|DNJC2_DANRE DnaJ homolog subfamily C member 2 OS=Danio rerio GN=dnajc2 PE=2
SV=1
Length = 618
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 1 MASGSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58
+ + S ++ WT +E KL E+AL Y T +RW+ I++AV G++ ++ K Y+ LV+
Sbjct: 544 VGADSNAAAWTTEEQKLLEQALKTYPVSTAERWERISEAV-PGRSKKDCMKRYKELVE 600
>sp|Q61712|DNJC1_MOUSE DnaJ homolog subfamily C member 1 OS=Mus musculus GN=Dnajc1 PE=1
SV=1
Length = 552
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58
WT + KL E AL Y K DRW IAK V K+ E+ Y++LV+
Sbjct: 495 WTQSQQKLLELALQQYPKGASDRWDKIAKCV-PSKSKEDCIARYKLLVE 542
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 4 GSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKH 52
GS S WT +E +LFE+ L Y + RW IAK + G +TV +VK +
Sbjct: 116 GSYSLKWTSEEKELFEQGLVKYGR----RWTKIAKLI-GSRTVLQVKSY 159
>sp|Q96KC8|DNJC1_HUMAN DnaJ homolog subfamily C member 1 OS=Homo sapiens GN=DNAJC1 PE=1
SV=1
Length = 554
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58
WT + KL E AL Y + + DRW IA+ V K+ E+ Y++LV+
Sbjct: 497 WTQNQQKLLELALQQYPRGSSDRWDKIARCV-PSKSKEDCIARYKLLVE 544
>sp|Q54IF9|MYBG_DICDI Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1
Length = 423
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAG-RV 68
WT +E++ F +AL L+D++ W+ I V G KTV +++ H + + + G R+
Sbjct: 44 WTDEEHQKFLEALTLFDRD----WKKIESFV-GSKTVIQIRSHAQKYFIKVQKNNTGERI 98
Query: 69 PIP 71
P P
Sbjct: 99 PPP 101
>sp|P34454|YMA9_CAEEL Uncharacterized protein F54F2.9 OS=Caenorhabditis elegans
GN=F54F2.9 PE=4 SV=3
Length = 414
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNR 62
W+ E K FE AL Y K T +RW+ I++ + G KT ++V ++ L + + +
Sbjct: 357 WSQAEQKAFETALQKYPKGTDERWERISEEI-GSKTKKQVMVRFKQLAEMIRK 408
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 4 GSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRI 63
S S WT +E +LFE+ LA + + RW I+K + G +TV +VK + N++
Sbjct: 115 ASYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI-GSRTVLQVKSYARQYFK--NKV 167
Query: 64 EAG-RVPIPNYKSPGSSYNAANEER 87
+ G PN K+ G + NE++
Sbjct: 168 KCGLDKETPNQKT-GHNLQVKNEDK 191
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 3 SGSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKH 52
S + + W +E +LFEK LA + + RW IAK + G +TV +VK +
Sbjct: 95 SSAAQTRWAEEEKELFEKGLAQFGR----RWTKIAKLI-GTRTVLQVKSY 139
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 8/47 (17%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVK---KHY 53
WT +E LFE+ LA + + RW +IA+ + G ++V +VK +HY
Sbjct: 112 WTKEEKNLFEQGLATFGR----RWTSIARLI-GSRSVLQVKNYARHY 153
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 3 SGSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYE 54
SG+ S+WT +E +LF +A LYDK+ +++ KT+ +V+ H +
Sbjct: 146 SGATRSSWTKEEERLFVEAYKLYDKDNKKIQEHVKT-----KTILQVRSHAQ 192
>sp|P44419|GLNE_HAEIN Glutamate-ammonia-ligase adenylyltransferase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=glnE PE=3 SV=1
Length = 981
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 28 ETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVPIPNYKSPG 77
E P Q + + + + E HY IL+D+L EA R P+P + P
Sbjct: 584 ENPRALQQVIELCAQSQLISEQLAHYPILLDELLNTEALRHPLPFTQYPA 633
>sp|P43609|RSC8_YEAST Chromatin structure-remodeling complex protein RSC8
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC8 PE=1 SV=1
Length = 557
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 5 SLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEE-VKKHYEILVDD 59
S+ W+ +E L + + +Y+ D+W+ IA VGG K VE+ ++K + ++D
Sbjct: 310 SVKKNWSDQEMLLLLEGIEMYE----DQWEKIADHVGGHKRVEDCIEKFLSLPIED 361
>sp|Q54PP6|MYBY_DICDI Myb-like protein Y OS=Dictyostelium discoideum GN=mybY PE=4 SV=1
Length = 572
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGG--------GKTVEEVKKHYEILVDDLN 61
W E+ +F KA Y+ PD+ I K V +T+EE+ H ++ + LN
Sbjct: 31 WNLDEHNIFSKASLEYNFLKPDQMIEILKLVNQHNSNTSCKARTLEELNIHIKVYQNFLN 90
Query: 62 RIEAGRVP 69
+ +A R P
Sbjct: 91 KQQALRSP 98
>sp|Q54J55|MYBX_DICDI Myb-like protein X OS=Dictyostelium discoideum GN=mybX PE=3 SV=1
Length = 1620
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHY 53
WT E L + + ++ D WQ I+ +GG KT E+ H+
Sbjct: 930 WTDIETLLLLEGIEIFR----DNWQEISDYIGGSKTPEQCLTHF 969
>sp|Q6R0H0|ASG4_ARATH Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1
Length = 287
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYE 54
WT +E+ F +AL L+D++ W+ I KA G KTV +++ H +
Sbjct: 64 WTEQEHDKFLEALHLFDRD----WKKI-KAFVGSKTVIQIRSHAQ 103
>sp|Q0AYH7|DUT_SYNWW Deoxyuridine 5'-triphosphate nucleotidohydrolase
OS=Syntrophomonas wolfei subsp. wolfei (strain
Goettingen) GN=dut PE=3 SV=1
Length = 145
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 60 LNRIEAGRVPIPNYKSPGSS----YNAANEERILKNLKL 94
NR+ + +P+P Y +PGSS Y A +EE ++ + K+
Sbjct: 5 FNRLHSHDLPLPRYMTPGSSGLDLYAAVDEEILIPSGKI 43
>sp|Q7N8Y3|DNAJ_PHOLL Chaperone protein DnaJ OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=dnaJ PE=3 SV=1
Length = 372
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNR 62
+S T + KE K K LA+ K PDR Q +A +EVK+ YEIL DD R
Sbjct: 12 VSKTASEKEIKKAYKRLAM--KYHPDRNQGDKEA---ESQFKEVKEAYEILTDDQKR 63
>sp|Q5RBN9|TAD2B_PONAB Transcriptional adapter 2-beta OS=Pongo abelii GN=TADA2B PE=2 SV=1
Length = 420
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHY 53
WT +E +L A+ + W+++A VG +T +EV +HY
Sbjct: 70 WTSREEQLLLDAIEQFGFGN---WEDMAAHVGASRTPQEVMEHY 110
>sp|Q86TJ2|TAD2B_HUMAN Transcriptional adapter 2-beta OS=Homo sapiens GN=TADA2B PE=1 SV=2
Length = 420
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHY 53
WT +E +L A+ + W+++A VG +T +EV +HY
Sbjct: 70 WTSREEQLLLDAIEQFGFGN---WEDMAAHVGASRTPQEVMEHY 110
>sp|A5US48|LIPA_ROSS1 Lipoyl synthase OS=Roseiflexus sp. (strain RS-1) GN=lipA PE=3 SV=1
Length = 301
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 40 VGGGKTVEEVKKHYEILVDDLNRIEAGRVPIPNYKSPGSSY 80
VG G+T EEV Y++ +D L ++ + I Y SPG+SY
Sbjct: 217 VGAGETNEEV---YQV-IDRLRDVDVNVLTIGQYLSPGASY 253
>sp|Q5Y388|POLS_GETV Structural polyprotein OS=Getah virus PE=3 SV=1
Length = 1253
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 4 GSLSSTWTPKENKL-------FEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEIL 56
G +S+ WTP +NK+ + + Y P R+ +I +TVE K Y
Sbjct: 979 GPISTAWTPFDNKIVVYKNDVYNQDFPPYGSGQPGRFGDIQS-----RTVES-KDLYANT 1032
Query: 57 VDDLNRIEAGRVPIPNYKSP 76
L+R +G V +P ++P
Sbjct: 1033 ALKLSRPSSGTVHVPYTQTP 1052
>sp|Q9JGK8|POLS_SAGV Structural polyprotein OS=Sagiyama virus PE=3 SV=1
Length = 1253
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 4 GSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGG--GKTVEEVKKHYEILVDDLN 61
G +S+ WTP +NK+ +Y+++ P G +TVE K Y L+
Sbjct: 979 GPISTAWTPFDNKIVVYKNDVYNQDFPPYGSGQPGRFGDVQSRTVES-KDLYANTALKLS 1037
Query: 62 RIEAGRVPIPNYKSP 76
R +G V +P ++P
Sbjct: 1038 RPSSGTVHVPYTQTP 1052
>sp|Q6NRB5|TAD2B_XENLA Transcriptional adapter 2-beta OS=Xenopus laevis GN=tada2b PE=2
SV=1
Length = 420
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVP 69
WT +E +L A+ + W+++A VG +T EV +HY + N G+
Sbjct: 70 WTSREEQLLLDAIEQF---GFGNWEDMAAHVGASRTPTEVMEHYVTMYIHGN---LGKAC 123
Query: 70 IPN 72
IP+
Sbjct: 124 IPD 126
>sp|Q54CT1|MYBN_DICDI Myb-like protein N OS=Dictyostelium discoideum GN=mybN PE=3 SV=1
Length = 577
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHY 53
WT +E+ K + L + +W+ IA +GGGKT + +H+
Sbjct: 417 WTKEESS---KLITLVHENGDKQWKKIALQIGGGKTGAQCAQHW 457
>sp|B0JY77|RUVB_MICAN Holliday junction ATP-dependent DNA helicase RuvB OS=Microcystis
aeruginosa (strain NIES-843) GN=ruvB PE=3 SV=1
Length = 358
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 5 SLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVG-GGKTVEEVKKHYEILVDDLNRI 63
S+ WT ++L K + + P + +A A G KT+EEV + Y + + LNR
Sbjct: 269 SMGLDWT---DRLVLKTMIQQFQGKPVGLEAVAAATGEDAKTIEEVYEPYLLQIGYLNRT 325
Query: 64 EAGRV 68
GRV
Sbjct: 326 PRGRV 330
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,444,352
Number of Sequences: 539616
Number of extensions: 1415994
Number of successful extensions: 4065
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 4018
Number of HSP's gapped (non-prelim): 66
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)