Query 034427
Match_columns 95
No_of_seqs 120 out of 578
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 03:46:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cjj_A Radialis; plant develop 100.0 3.4E-32 1.2E-36 180.9 9.0 92 1-95 1-93 (93)
2 2cqq_A RSGI RUH-037, DNAJ homo 99.9 2.7E-26 9.3E-31 146.1 8.0 66 5-73 6-71 (72)
3 4eef_G F-HB80.4, designed hema 99.8 1.8E-22 6.1E-27 129.7 -0.3 54 1-55 13-67 (74)
4 1wgx_A KIAA1903 protein; MYB D 99.8 7.5E-21 2.6E-25 121.8 5.9 56 4-60 5-60 (73)
5 2cqr_A RSGI RUH-043, DNAJ homo 99.8 7.5E-21 2.6E-25 121.3 5.7 55 6-61 17-71 (73)
6 2yum_A ZZZ3 protein, zinc fing 99.7 1.7E-16 5.8E-21 99.7 8.7 65 6-74 7-73 (75)
7 2yus_A SWI/SNF-related matrix- 99.6 1.3E-16 4.5E-21 102.6 3.4 59 6-69 17-76 (79)
8 2din_A Cell division cycle 5-l 99.6 1.1E-14 3.7E-19 89.6 6.9 56 6-67 8-63 (66)
9 1x41_A Transcriptional adaptor 99.5 1.8E-14 6E-19 87.5 7.2 48 6-57 7-54 (60)
10 2elk_A SPCC24B10.08C protein; 99.5 1.6E-14 5.5E-19 87.4 6.6 47 7-56 9-55 (58)
11 1guu_A C-MYB, MYB proto-oncoge 99.5 1.9E-14 6.7E-19 84.5 6.3 47 7-57 3-49 (52)
12 1gvd_A MYB proto-oncogene prot 99.5 2.9E-14 9.8E-19 83.9 4.9 46 7-56 3-48 (52)
13 2d9a_A B-MYB, MYB-related prot 99.5 8.9E-14 3.1E-18 83.9 7.0 47 6-56 7-53 (60)
14 2cu7_A KIAA1915 protein; nucle 99.5 1.6E-13 5.6E-18 85.7 7.5 50 6-60 8-57 (72)
15 2eqr_A N-COR1, N-COR, nuclear 99.4 4.3E-13 1.5E-17 81.8 6.2 45 6-55 11-55 (61)
16 2dim_A Cell division cycle 5-l 99.4 7.5E-13 2.6E-17 82.1 6.8 51 6-60 8-59 (70)
17 3sjm_A Telomeric repeat-bindin 99.4 1.3E-12 4.4E-17 80.7 6.8 49 6-57 10-59 (64)
18 1w0t_A Telomeric repeat bindin 99.4 1.5E-12 5E-17 77.0 6.7 48 7-57 2-50 (53)
19 2k9n_A MYB24; R2R3 domain, DNA 99.3 2.7E-12 9.4E-17 85.0 7.1 46 8-57 2-47 (107)
20 1gv2_A C-MYB, MYB proto-oncoge 99.3 2E-12 7E-17 84.8 6.4 46 7-56 4-49 (105)
21 2k9n_A MYB24; R2R3 domain, DNA 99.3 5.7E-12 2E-16 83.4 7.4 52 6-62 52-103 (107)
22 1ity_A TRF1; helix-turn-helix, 99.3 6.4E-12 2.2E-16 77.8 6.9 49 6-57 9-58 (69)
23 3osg_A MYB21; transcription-DN 99.3 3.8E-12 1.3E-16 86.6 5.9 51 6-61 61-111 (126)
24 1h8a_C AMV V-MYB, MYB transfor 99.3 9.7E-12 3.3E-16 84.3 7.8 48 6-57 26-73 (128)
25 1gv2_A C-MYB, MYB proto-oncoge 99.3 8.4E-12 2.9E-16 81.9 6.2 47 6-57 55-101 (105)
26 3osg_A MYB21; transcription-DN 99.2 2.2E-11 7.6E-16 82.7 7.5 47 6-57 10-56 (126)
27 2ltp_A Nuclear receptor corepr 98.8 1.3E-12 4.5E-17 85.0 0.0 50 6-60 15-64 (89)
28 2llk_A Cyclin-D-binding MYB-li 99.2 1.3E-11 4.3E-16 78.5 4.0 48 6-59 22-69 (73)
29 3zqc_A MYB3; transcription-DNA 99.2 1E-11 3.5E-16 84.8 3.3 47 7-57 2-48 (131)
30 1h8a_C AMV V-MYB, MYB transfor 99.2 2.9E-11 9.9E-16 82.0 4.9 47 6-57 78-124 (128)
31 2ckx_A NGTRF1, telomere bindin 99.2 8.1E-11 2.8E-15 76.3 6.7 47 8-58 1-51 (83)
32 1h89_C C-MYB, MYB proto-oncoge 99.1 1.3E-10 4.3E-15 81.2 6.7 47 6-56 57-103 (159)
33 2yqk_A Arginine-glutamic acid 99.1 3.8E-10 1.3E-14 69.3 7.2 45 6-55 8-53 (63)
34 3zqc_A MYB3; transcription-DNA 99.1 1.5E-10 5.1E-15 78.9 5.9 50 6-60 53-102 (131)
35 2crg_A Metastasis associated p 99.1 3.4E-10 1.2E-14 70.9 6.8 45 5-54 6-51 (70)
36 1h89_C C-MYB, MYB proto-oncoge 99.0 1.9E-10 6.6E-15 80.3 5.1 47 6-57 109-155 (159)
37 2iw5_B Protein corest, REST co 99.0 6.3E-10 2.1E-14 84.1 6.9 46 6-56 132-177 (235)
38 2aje_A Telomere repeat-binding 99.0 9.2E-10 3.1E-14 74.2 5.7 49 6-58 12-64 (105)
39 2roh_A RTBP1, telomere binding 98.9 1.5E-09 5.2E-14 74.9 6.4 50 6-59 30-83 (122)
40 2juh_A Telomere binding protei 98.9 1.3E-09 4.6E-14 75.1 4.9 50 6-59 16-69 (121)
41 4a69_C Nuclear receptor corepr 98.9 3.7E-09 1.3E-13 69.6 6.1 44 7-55 43-86 (94)
42 1x58_A Hypothetical protein 49 98.8 1.9E-08 6.4E-13 62.4 6.1 48 6-58 7-57 (62)
43 1ign_A Protein (RAP1); RAP1,ye 98.7 1E-08 3.4E-13 78.0 4.5 54 6-60 7-63 (246)
44 2xag_B REST corepressor 1; ami 98.6 6.4E-08 2.2E-12 79.2 6.3 45 6-55 379-423 (482)
45 3hm5_A DNA methyltransferase 1 98.5 5.2E-07 1.8E-11 59.7 7.2 52 8-64 31-87 (93)
46 1ofc_X ISWI protein; nuclear p 98.4 3.7E-07 1.3E-11 71.0 5.3 56 8-67 111-176 (304)
47 1ug2_A 2610100B20RIK gene prod 98.4 1.5E-06 5.2E-11 57.7 7.2 52 8-61 34-85 (95)
48 1fex_A TRF2-interacting telome 98.1 1.1E-05 3.9E-10 48.8 6.0 48 8-56 3-56 (59)
49 2lr8_A CAsp8-associated protei 97.2 1E-06 3.5E-11 55.7 0.0 51 8-61 15-65 (70)
50 4iej_A DNA methyltransferase 1 97.7 0.00017 5.7E-09 47.7 7.5 53 8-64 31-87 (93)
51 2xag_B REST corepressor 1; ami 97.6 9.3E-06 3.2E-10 66.5 0.0 42 8-54 190-231 (482)
52 2ebi_A DNA binding protein GT- 97.5 0.00034 1.2E-08 44.1 6.3 60 7-66 4-72 (86)
53 1irz_A ARR10-B; helix-turn-hel 97.3 0.0014 4.9E-08 40.4 7.3 55 6-62 6-62 (64)
54 4b4c_A Chromodomain-helicase-D 97.1 0.0009 3.1E-08 47.7 5.9 52 6-59 6-59 (211)
55 1ofc_X ISWI protein; nuclear p 96.6 0.0066 2.3E-07 47.1 7.1 55 6-61 211-277 (304)
56 1ign_A Protein (RAP1); RAP1,ye 96.3 0.016 5.5E-07 43.9 7.8 28 32-60 173-200 (246)
57 2y9y_A Imitation switch protei 95.8 0.015 5.2E-07 46.3 5.8 46 8-56 124-169 (374)
58 2y9y_A Imitation switch protei 94.3 0.097 3.3E-06 41.7 6.4 55 6-61 227-293 (374)
59 4b4c_A Chromodomain-helicase-D 93.3 0.28 9.5E-06 34.6 6.7 52 7-61 134-198 (211)
60 2xb0_X Chromo domain-containin 91.0 0.64 2.2E-05 35.2 6.6 47 8-56 4-52 (270)
61 2ecc_A Homeobox and leucine zi 87.5 3.6 0.00012 25.5 10.1 58 2-61 2-59 (76)
62 2da6_A Hepatocyte nuclear fact 85.3 4.8 0.00016 26.3 7.2 59 6-64 9-86 (102)
63 2xb0_X Chromo domain-containin 84.3 0.82 2.8E-05 34.6 3.5 28 8-38 169-196 (270)
64 2hdd_A Protein (engrailed home 78.5 7 0.00024 22.1 7.3 56 1-58 1-56 (61)
65 2cxy_A BAF250B subunit, HBAF25 75.9 5.6 0.00019 26.2 5.0 46 31-76 73-122 (125)
66 2hzd_A Transcriptional enhance 74.1 9 0.00031 24.3 5.4 55 6-60 5-75 (82)
67 2eqy_A RBP2 like, jumonji, at 69.5 16 0.00056 23.9 6.2 47 31-77 64-117 (122)
68 3i4p_A Transcriptional regulat 67.8 12 0.00042 24.8 5.4 39 15-58 5-43 (162)
69 1qgp_A Protein (double strande 64.5 19 0.00065 21.5 5.3 45 12-58 13-57 (77)
70 2dmp_A Zinc fingers and homeob 64.4 22 0.00075 21.8 8.5 56 9-66 19-74 (89)
71 1bw5_A ISL-1HD, insulin gene e 64.1 18 0.00061 20.6 7.3 54 3-58 3-56 (66)
72 1qbj_A Protein (double-strande 62.8 21 0.00071 21.8 5.3 42 15-58 12-53 (81)
73 3a02_A Homeobox protein arista 61.0 19 0.00066 20.1 6.6 52 7-60 3-54 (60)
74 1ig7_A Homeotic protein MSX-1; 59.2 20 0.0007 19.7 7.7 51 7-59 4-54 (58)
75 2jxj_A Histone demethylase jar 58.1 7.5 0.00026 24.2 2.6 35 31-65 58-95 (96)
76 2e1c_A Putative HTH-type trans 57.2 29 0.00099 23.4 5.8 43 10-58 25-67 (171)
77 2dms_A Homeobox protein OTX2; 56.5 28 0.00097 20.5 9.1 59 6-66 10-68 (80)
78 2lm1_A Lysine-specific demethy 56.0 26 0.00091 22.0 5.1 36 31-66 66-104 (107)
79 2cra_A Homeobox protein HOX-B1 54.7 28 0.00097 20.0 6.6 52 7-60 11-62 (70)
80 2dmt_A Homeobox protein BARH-l 54.2 32 0.0011 20.4 6.5 52 8-61 22-73 (80)
81 2e19_A Transcription factor 8; 54.0 30 0.001 20.0 6.8 54 3-58 3-56 (64)
82 2ys8_A RAB-related GTP-binding 53.6 35 0.0012 20.7 6.4 48 7-61 9-56 (90)
83 2da4_A Hypothetical protein DK 53.6 32 0.0011 20.3 6.1 53 8-62 13-69 (80)
84 1akh_A Protein (mating-type pr 53.5 27 0.00092 19.4 6.0 48 7-56 9-56 (61)
85 1kkx_A Transcription regulator 53.3 25 0.00086 23.1 4.8 31 30-61 69-99 (123)
86 2dbb_A Putative HTH-type trans 53.1 42 0.0014 21.5 6.2 43 10-58 7-49 (151)
87 2da3_A Alpha-fetoprotein enhan 51.7 34 0.0012 20.0 5.5 52 8-61 22-73 (80)
88 2da1_A Alpha-fetoprotein enhan 51.6 32 0.0011 19.7 7.5 54 6-61 10-63 (70)
89 1fs1_B SKP1, cyclin A/CDK2-ass 51.3 8.7 0.0003 25.5 2.2 20 34-54 115-134 (141)
90 2da2_A Alpha-fetoprotein enhan 51.2 33 0.0011 19.6 6.8 53 6-60 10-62 (70)
91 2dmu_A Homeobox protein goosec 49.9 35 0.0012 19.6 7.5 54 6-61 10-63 (70)
92 1k61_A Mating-type protein alp 49.6 32 0.0011 19.1 6.5 49 8-58 3-54 (60)
93 2dmq_A LIM/homeobox protein LH 49.5 38 0.0013 19.9 8.0 56 6-63 10-65 (80)
94 2ly9_A Zinc fingers and homeob 49.4 36 0.0012 19.6 8.2 59 5-65 8-66 (74)
95 2cue_A Paired box protein PAX6 48.5 40 0.0014 19.9 7.6 54 6-61 10-63 (80)
96 2k40_A Homeobox expressed in E 48.4 36 0.0012 19.3 6.7 54 7-62 5-58 (67)
97 2cyy_A Putative HTH-type trans 48.3 52 0.0018 21.1 6.0 43 10-58 5-47 (151)
98 2o8x_A Probable RNA polymerase 48.0 33 0.0011 18.8 6.7 47 8-61 14-60 (70)
99 2h1k_A IPF-1, pancreatic and d 47.8 36 0.0012 19.1 7.7 54 6-61 6-59 (63)
100 1i1g_A Transcriptional regulat 47.0 51 0.0017 20.7 5.6 40 14-59 6-45 (141)
101 2djn_A Homeobox protein DLX-5; 46.7 40 0.0014 19.3 6.1 51 7-59 11-61 (70)
102 2kk0_A AT-rich interactive dom 46.1 25 0.00087 23.7 4.0 39 31-69 86-128 (145)
103 2e1o_A Homeobox protein PRH; D 46.0 41 0.0014 19.3 7.8 53 7-61 11-63 (70)
104 3v7d_A Suppressor of kinetocho 45.9 15 0.0005 25.3 2.8 41 13-54 102-146 (169)
105 2p1m_A SKP1-like protein 1A; F 45.8 11 0.00038 25.5 2.1 20 34-54 119-138 (160)
106 2dn0_A Zinc fingers and homeob 45.0 45 0.0015 19.5 7.6 54 7-62 12-65 (76)
107 1fse_A GERE; helix-turn-helix 44.6 39 0.0013 18.6 5.8 48 6-61 8-55 (74)
108 2cuf_A FLJ21616 protein; homeo 44.5 52 0.0018 20.1 8.9 61 6-66 10-83 (95)
109 2l7z_A Homeobox protein HOX-A1 44.3 45 0.0016 19.3 6.2 55 6-62 10-64 (73)
110 3k2a_A Homeobox protein MEIS2; 44.1 45 0.0015 19.2 6.6 52 8-61 3-57 (67)
111 1fjl_A Paired protein; DNA-bin 44.0 48 0.0016 19.5 7.9 53 7-61 22-74 (81)
112 1du6_A PBX1, homeobox protein 43.8 42 0.0014 18.8 5.2 49 6-56 6-57 (64)
113 2li6_A SWI/SNF chromatin-remod 42.4 16 0.00056 23.6 2.4 26 31-57 71-96 (116)
114 1c20_A DEAD ringer protein; DN 42.1 49 0.0017 21.6 4.8 37 31-67 74-114 (128)
115 2cop_A Acyl-coenzyme A binding 42.1 44 0.0015 21.7 4.5 28 32-61 61-88 (109)
116 1or7_A Sigma-24, RNA polymeras 41.9 68 0.0023 20.7 5.7 30 31-62 157-186 (194)
117 2pn6_A ST1022, 150AA long hypo 41.5 66 0.0023 20.4 5.4 37 17-58 7-43 (150)
118 2cg4_A Regulatory protein ASNC 41.5 68 0.0023 20.5 5.9 43 11-59 7-49 (152)
119 1e3o_C Octamer-binding transcr 41.3 78 0.0027 21.2 6.5 53 7-61 105-157 (160)
120 2p5v_A Transcriptional regulat 40.9 72 0.0025 20.7 5.8 44 10-59 8-51 (162)
121 1jgg_A Segmentation protein EV 39.9 48 0.0016 18.3 7.8 50 7-58 5-54 (60)
122 2ecb_A Zinc fingers and homeob 39.9 66 0.0023 20.0 9.0 57 8-66 16-72 (89)
123 2ast_A S-phase kinase-associat 39.8 16 0.00056 24.4 2.2 20 34-54 120-139 (159)
124 3a03_A T-cell leukemia homeobo 39.6 47 0.0016 18.2 7.1 49 8-58 2-50 (56)
125 1zq3_P PRD-4, homeotic bicoid 39.0 54 0.0018 18.7 8.2 58 6-65 5-62 (68)
126 1yz8_P Pituitary homeobox 2; D 38.6 54 0.0019 18.6 7.3 57 6-64 6-62 (68)
127 2jrz_A Histone demethylase jar 38.6 27 0.00093 22.6 3.1 35 31-66 62-100 (117)
128 2dmn_A Homeobox protein TGIF2L 38.4 63 0.0022 19.3 7.2 53 7-61 11-66 (83)
129 3mzy_A RNA polymerase sigma-H 37.3 72 0.0025 19.7 5.6 28 32-61 126-153 (164)
130 2ia0_A Putative HTH-type trans 37.3 79 0.0027 21.1 5.4 46 7-58 12-57 (171)
131 1x3u_A Transcriptional regulat 36.6 57 0.002 18.3 4.9 44 10-61 17-60 (79)
132 2da5_A Zinc fingers and homeob 36.1 65 0.0022 18.8 6.7 57 8-66 12-68 (75)
133 1ig6_A MRF-2, modulator recogn 36.1 19 0.00064 22.8 1.9 43 31-73 55-103 (107)
134 1hbk_A ACBP, acyl-COA binding 35.1 41 0.0014 20.8 3.4 28 32-61 57-84 (89)
135 2d5v_A Hepatocyte nuclear fact 35.1 98 0.0034 20.6 6.5 52 7-60 101-152 (164)
136 1b72_B Protein (PBX1); homeodo 35.0 71 0.0024 18.9 7.3 53 7-61 5-60 (87)
137 1go3_F DNA-directed RNA polyme 34.3 91 0.0031 19.9 5.5 42 9-53 46-87 (107)
138 1nk2_P Homeobox protein VND; h 34.0 71 0.0024 18.6 7.9 53 7-61 13-65 (77)
139 3fp5_A Acyl-COA binding protei 33.7 47 0.0016 21.5 3.6 25 40-66 68-92 (106)
140 1je8_A Nitrate/nitrite respons 33.1 74 0.0025 18.5 4.8 46 8-61 20-65 (82)
141 3epy_A Acyl-COA-binding domain 32.6 50 0.0017 20.6 3.5 28 33-62 58-85 (89)
142 2vi6_A Homeobox protein nanog; 31.9 68 0.0023 17.8 6.4 49 7-57 7-55 (62)
143 2kt0_A Nanog, homeobox protein 31.9 80 0.0027 18.5 6.5 51 7-59 26-76 (84)
144 1oeg_A Apolipoprotein E; siali 31.8 19 0.00065 18.2 1.1 17 46-62 3-19 (26)
145 3kw6_A 26S protease regulatory 31.8 61 0.0021 18.7 3.6 40 15-55 9-48 (78)
146 1b72_A Protein (homeobox prote 31.7 89 0.0031 19.0 7.6 55 7-63 38-92 (97)
147 2xsd_C POU domain, class 3, tr 31.5 1.2E+02 0.0041 20.5 6.1 54 7-62 103-156 (164)
148 1ku3_A Sigma factor SIGA; heli 31.5 72 0.0025 17.9 6.3 50 9-61 10-59 (73)
149 2cb8_A Acyl-COA-binding protei 31.4 55 0.0019 20.2 3.5 29 32-62 55-83 (87)
150 3aji_B S6C, proteasome (prosom 31.1 41 0.0014 19.6 2.8 38 16-54 8-45 (83)
151 2cfx_A HTH-type transcriptiona 31.1 1E+02 0.0035 19.5 5.7 37 17-58 9-45 (144)
152 2da7_A Zinc finger homeobox pr 30.7 94 0.0032 19.0 6.0 45 12-58 14-58 (71)
153 2p7v_B Sigma-70, RNA polymeras 30.3 73 0.0025 17.6 5.8 47 10-61 6-54 (68)
154 2oy9_A UPF0223 protein BH2638; 30.2 1.1E+02 0.0039 19.8 5.2 39 8-57 11-49 (98)
155 2lbb_A Acyl COA binding protei 29.8 56 0.0019 20.8 3.4 28 32-61 64-91 (96)
156 3e7l_A Transcriptional regulat 28.4 82 0.0028 17.6 4.6 36 13-54 19-54 (63)
157 1puf_B PRE-B-cell leukemia tra 28.2 88 0.003 17.9 7.4 54 7-62 5-61 (73)
158 1st7_A ACBP, acyl-COA-binding 28.0 41 0.0014 20.7 2.5 28 32-61 54-81 (86)
159 1puf_A HOX-1.7, homeobox prote 28.0 93 0.0032 18.1 7.8 54 7-62 17-70 (77)
160 2hi3_A Homeodomain-only protei 27.5 93 0.0032 17.9 9.7 57 6-64 5-62 (73)
161 1au7_A Protein PIT-1, GHF-1; c 27.3 1.4E+02 0.0047 19.7 6.3 50 7-58 91-140 (146)
162 1p4w_A RCSB; solution structur 27.3 1.1E+02 0.0039 18.8 6.0 46 7-60 32-77 (99)
163 2pjp_A Selenocysteine-specific 27.2 1.2E+02 0.0041 19.0 5.7 43 11-56 2-44 (121)
164 3d1n_I POU domain, class 6, tr 26.4 1.4E+02 0.0048 19.6 6.8 51 7-59 97-147 (151)
165 1txl_A Metal-binding protein Y 26.4 19 0.00066 26.5 0.8 34 30-64 74-108 (215)
166 3a01_A Homeodomain-containing 26.3 1.1E+02 0.0039 18.5 7.7 55 7-63 21-75 (93)
167 2m0c_A Homeobox protein arista 25.8 98 0.0033 17.6 6.3 55 7-63 13-67 (75)
168 1oef_A Apolipoprotein E; glyco 25.8 65 0.0022 15.5 2.8 16 46-61 7-22 (26)
169 1x2n_A Homeobox protein pknox1 25.7 1E+02 0.0034 17.6 7.6 53 6-60 10-65 (73)
170 3c57_A Two component transcrip 25.3 1.1E+02 0.0039 18.2 5.8 47 8-62 26-72 (95)
171 2rnj_A Response regulator prot 24.9 1.1E+02 0.0038 17.9 4.8 45 9-61 29-73 (91)
172 2r5y_A Homeotic protein sex co 24.8 1.2E+02 0.004 18.1 7.0 54 6-61 31-84 (88)
173 1mnm_C Protein (MAT alpha-2 tr 24.4 1.2E+02 0.004 18.0 7.2 49 7-57 31-82 (87)
174 1uhs_A HOP, homeodomain only p 24.2 1.1E+02 0.0037 17.5 7.7 57 6-64 4-61 (72)
175 1ahd_P Antennapedia protein mu 24.2 1.1E+02 0.0036 17.4 8.3 56 7-64 6-61 (68)
176 2w25_A Probable transcriptiona 24.2 1.4E+02 0.0049 18.9 5.4 42 11-58 6-47 (150)
177 3flv_A Acyl-COA-binding domain 24.2 94 0.0032 20.6 3.8 28 32-61 81-108 (119)
178 3ulq_B Transcriptional regulat 23.8 1.2E+02 0.0043 18.1 5.7 47 7-61 27-73 (90)
179 1tty_A Sigma-A, RNA polymerase 23.7 1.2E+02 0.004 17.7 5.7 29 31-61 39-67 (87)
180 1ftt_A TTF-1 HD, thyroid trans 23.0 1.1E+02 0.0038 17.2 7.8 56 7-64 6-61 (68)
181 3nar_A ZHX1, zinc fingers and 22.7 1.4E+02 0.0047 18.1 6.8 53 7-61 29-81 (96)
182 2wh5_A Acyl-COA-binding domain 22.3 1.1E+02 0.0036 19.8 3.7 29 32-62 65-93 (106)
183 1ntc_A Protein (nitrogen regul 22.0 1.4E+02 0.0046 17.9 4.3 36 14-55 52-87 (91)
184 2jpc_A SSRB; DNA binding prote 21.6 1E+02 0.0035 16.3 3.8 27 33-61 16-42 (61)
185 2cqu_A Peroxisomal D3,D2-enoyl 21.5 86 0.0029 20.6 3.2 28 32-61 69-96 (116)
186 1uzc_A Hypothetical protein FL 21.4 1.2E+02 0.0041 18.1 3.6 30 12-41 14-44 (71)
187 3rkq_A Homeobox protein NKX-2. 21.0 1.1E+02 0.0037 16.3 6.1 49 7-57 6-54 (58)
188 1oyi_A Double-stranded RNA-bin 20.5 1.3E+02 0.0046 18.5 3.8 35 18-58 22-56 (82)
189 1le8_B Mating-type protein alp 20.2 1.5E+02 0.005 17.5 6.8 53 8-62 7-62 (83)
No 1
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.97 E-value=3.4e-32 Score=180.93 Aligned_cols=92 Identities=58% Similarity=1.009 Sum_probs=61.8
Q ss_pred CCC-CCCCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 034427 1 MAS-GSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVPIPNYKSPGSS 79 (95)
Q Consensus 1 ~~~-~~~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~iesg~v~~P~y~~~~~~ 79 (95)
|.| +++...||.|||++|++||++|+.++++||++||++|| |||++||++||+.|++||..||+|.+|+|+|.++|
T Consensus 1 ~~~~~~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~~~~-- 77 (93)
T 2cjj_A 1 MASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILVEDIKYIESGKVPFPNYRTTG-- 77 (93)
T ss_dssp -------CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHHHHHHHHHHSSCCC---------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC--
Confidence 444 45677999999999999999999999999999999999 89999999999999999999999999999998765
Q ss_pred CccchHHHHHhhccCC
Q 034427 80 YNAANEERILKNLKLQ 95 (95)
Q Consensus 80 ~~~~~~~~~~~~~~~~ 95 (95)
.+-.+++.|+++|+||
T Consensus 78 ~~~~~~~~~~~~~~~~ 93 (93)
T 2cjj_A 78 GNMKTDEKRFRNLKIR 93 (93)
T ss_dssp ----------------
T ss_pred CCcccHHHHHhcccCC
Confidence 3333788999999997
No 2
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.93 E-value=2.7e-26 Score=146.14 Aligned_cols=66 Identities=26% Similarity=0.514 Sum_probs=62.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 034427 5 SLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVPIPNY 73 (95)
Q Consensus 5 ~~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~iesg~v~~P~y 73 (95)
+.+..||.||+++|++||++||.++++||++||++| |||++||++||+.|++|+ .||+|+||+|+|
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~d~-~~~~G~vp~P~~ 71 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDSV-TCSPGMVSGPSS 71 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHHSC-CCCSCCCSCSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHHhc-CccCCCCCCCCC
Confidence 356789999999999999999999999999999998 499999999999999997 689999999998
No 3
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.83 E-value=1.8e-22 Score=129.70 Aligned_cols=54 Identities=52% Similarity=0.833 Sum_probs=44.3
Q ss_pred CCCCC-CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHH
Q 034427 1 MASGS-LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEI 55 (95)
Q Consensus 1 ~~~~~-~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~ 55 (95)
|||++ ++..||.+|+|+||+||++||+++|+||++||++|| |||++||++||+.
T Consensus 13 m~s~~~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~~ 67 (74)
T 4eef_G 13 MASTRGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYEL 67 (74)
T ss_dssp ---------CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC-
T ss_pred eccCCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 66644 567899999999999999999999999999999999 8999999999974
No 4
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.83 E-value=7.5e-21 Score=121.75 Aligned_cols=56 Identities=29% Similarity=0.427 Sum_probs=51.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 034427 4 GSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDL 60 (95)
Q Consensus 4 ~~~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV 60 (95)
++....||.+|+++||+||+.||.++|+||++||++|| |||++||++||+.|.++.
T Consensus 5 ~~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 5 SSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRGK 60 (73)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhcc
Confidence 44567899999999999999999999999999999999 899999999999995443
No 5
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.82 E-value=7.5e-21 Score=121.29 Aligned_cols=55 Identities=33% Similarity=0.614 Sum_probs=52.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
...+||.+||++|++||++|+.+++++|.+||++|| |||.+||+.||+.|++||.
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVSGPS 71 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHHccc
Confidence 567899999999999999999888999999999999 9999999999999999885
No 6
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=99.72 Aligned_cols=65 Identities=31% Similarity=0.540 Sum_probs=53.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCC--ChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 034427 6 LSSTWTPKENKLFEKALALYDKET--PDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVPIPNYK 74 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~--~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~iesg~v~~P~y~ 74 (95)
....||.|||++|+++|.+|+.++ +.+|.+||++|| |||..||+.||.++...+ +..| +++|.+.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~--~k~g-~~~pg~~ 73 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKL--TKAG-IPVSGPS 73 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGG--STTC-SCCCCSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHH--HhcC-CCCCCCC
Confidence 457899999999999999998754 379999999999 999999999997654332 3356 5788773
No 7
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-16 Score=102.56 Aligned_cols=59 Identities=29% Similarity=0.562 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH-HHHHHHHhcCCCC
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEIL-VDDLNRIEAGRVP 69 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L-~~dV~~iesg~v~ 69 (95)
....||.|||++|.+||.+|+ .+|.+||.+|| |||..||+.||..+ ++|+..+|+|--|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~-~RT~~qcr~r~~~~~i~d~~~~~~~~~p 76 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK----DDWNKVSEHVG-SRTQDECILHFLRLPIEDPYLENSDSGP 76 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHS-SCCHHHHHHHHTTSCCCCSSCCCCCCCS
T ss_pred cCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcC-CCCHHHHHHHHHHhcccccccccCCCCC
Confidence 357899999999999999998 37999999999 89999999999998 9999888887654
No 8
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=89.57 Aligned_cols=56 Identities=25% Similarity=0.539 Sum_probs=51.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGR 67 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~iesg~ 67 (95)
...+||.|||.+|..++..|+. +|.+||. ++ |||..||++||..+......+|+|.
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~~~ 63 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT----QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDSGP 63 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT----CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCC----CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCCCC
Confidence 4578999999999999999876 7999999 88 7999999999999999998898874
No 9
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=1.8e-14 Score=87.49 Aligned_cols=48 Identities=29% Similarity=0.440 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILV 57 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~ 57 (95)
...+||.|||++|.+++.+|+.+ +|.+||++|| |||.+||++||..+.
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~-~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFG---NWQDVANQMC-TKTKEECEKHYMKYF 54 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTT---CHHHHHHHHT-TSCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcC---cHHHHHHHhC-CCCHHHHHHHHHHHc
Confidence 45689999999999999999854 7999999999 999999999999754
No 10
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.54 E-value=1.6e-14 Score=87.37 Aligned_cols=47 Identities=30% Similarity=0.509 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEIL 56 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L 56 (95)
..+||.|||.+|..++.+|+.+ +|..||.+||+|||.+||++||..+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~---~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLG---NWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTT---CHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4679999999999999999854 7999999999679999999999875
No 11
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.53 E-value=1.9e-14 Score=84.50 Aligned_cols=47 Identities=17% Similarity=0.434 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILV 57 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~ 57 (95)
.++||.|||.+|..++.+|+.+ +|..||..|| |||..||+.||..++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~-~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTD---DWKVIANYLP-NRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSS---CHHHHHHTST-TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence 3689999999999999999764 7999999999 999999999999865
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.49 E-value=2.9e-14 Score=83.90 Aligned_cols=46 Identities=24% Similarity=0.517 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEIL 56 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L 56 (95)
.++||.|||.+|..++.+|+.. +|..||..|| |||..||+.||.++
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~-~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHLK-GRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTST-TCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC---hHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 4689999999999999999763 7999999999 99999999999874
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=8.9e-14 Score=83.89 Aligned_cols=47 Identities=13% Similarity=0.341 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEIL 56 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L 56 (95)
...+||.|||.+|..++.+|+.. +|..||..|| |||..||++||..+
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~-~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQ---DWKFLASHFP-NRTDQQCQYRWLRV 53 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTT---CHHHHHHHCS-SSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcc-CCCHHHHHHHHHHH
Confidence 56789999999999999999753 7999999999 99999999999974
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.47 E-value=1.6e-13 Score=85.73 Aligned_cols=50 Identities=36% Similarity=0.646 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDL 60 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV 60 (95)
...+||.|||.+|..++.+|+. +|..||.+|| |||..||+.||..+....
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR----RWTKISKLIG-SRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHS-SSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 5578999999999999999987 7999999999 999999999999876554
No 15
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=4.3e-13 Score=81.85 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEI 55 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~ 55 (95)
...+||++|+++|+.++.+||. +|.+||..|| |||+.||+++|-.
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l~-~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPK----NFGLIASYLE-RKSVPDCVLYYYL 55 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHCT-TSCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcC-CCCHHHHHHHHHH
Confidence 4568999999999999999986 6999999999 9999999999964
No 16
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=7.5e-13 Score=82.07 Aligned_cols=51 Identities=22% Similarity=0.474 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHH-HHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEI-LVDDL 60 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~-L~~dV 60 (95)
-.+.||.|||.+|..++.+|+.. +|..||..|| |||.+||+.||.. |..+|
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i 59 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKN---QWSRIASLLH-RKSAKQCKARWYEWLDPSI 59 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSS---CHHHHHHHST-TCCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHhc-CCCHHHHHHHHHHHcCCcc
Confidence 34689999999999999999853 7999999999 9999999999997 44444
No 17
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.37 E-value=1.3e-12 Score=80.73 Aligned_cols=49 Identities=18% Similarity=0.401 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVG-GGKTVEEVKKHYEILV 57 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vp-ggRT~~qv~~ry~~L~ 57 (95)
-...||+|||.+|..++.+|+.+ +|..||+.+| .|||..||++||.+|.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCC---chHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999765 7999999854 2799999999999875
No 18
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.37 E-value=1.5e-12 Score=76.99 Aligned_cols=48 Identities=17% Similarity=0.320 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCC-CCCHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGG-GKTVEEVKKHYEILV 57 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpg-gRT~~qv~~ry~~L~ 57 (95)
..+||+|||.+|..++.+|+.+ +|..||..||. |||..||++||.++.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999754 79999999983 499999999999875
No 19
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.34 E-value=2.7e-12 Score=84.97 Aligned_cols=46 Identities=11% Similarity=0.335 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILV 57 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~ 57 (95)
+.||.|||.+|..++.+|+.. +|..||..|| |||.+||++||.+..
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~-~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAK---DWIRISQLMI-TRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSS---CHHHHHHHTT-TSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CHHHHhhhcC-CCCHHHHHHHHHHHH
Confidence 579999999999999999864 7999999999 999999999999753
No 20
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.34 E-value=2e-12 Score=84.81 Aligned_cols=46 Identities=24% Similarity=0.504 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEIL 56 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L 56 (95)
.++||.|||.+|..++.+|+.. +|..||..|| |||..||++||..+
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l~-~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLK-GRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTST-TCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhhc-CCCHHHHHHHHHhc
Confidence 4689999999999999999864 7999999999 99999999999984
No 21
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.31 E-value=5.7e-12 Score=83.43 Aligned_cols=52 Identities=17% Similarity=0.572 Sum_probs=47.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNR 62 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ 62 (95)
..++||.|||.+|..++.+|+. +|..||..|| |||..||+.||..|...+..
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l~-gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP----KWNKISKFLK-NRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHS-SSCHHHHHHHHHHHHHHHHS
T ss_pred cccccCHHHHHHHHHHHHHhCc----CHHHHHHHCC-CCCHHHHHHHHHHHHhhHHH
Confidence 4579999999999999999976 6999999999 99999999999998877653
No 22
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.30 E-value=6.4e-12 Score=77.75 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCC-CCCHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGG-GKTVEEVKKHYEILV 57 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpg-gRT~~qv~~ry~~L~ 57 (95)
-...||.|||.+|..++.+|+.+ +|..||..||. |||..||++||..++
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSS---CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC---cHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence 45789999999999999999754 79999999984 599999999999854
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.29 E-value=3.8e-12 Score=86.56 Aligned_cols=51 Identities=25% Similarity=0.535 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
..++||.|||.+|..++.+|+. +|.+||..|| |||..+|+.||..|...+.
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~~l~-gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR----QWAIIAKFFP-GRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTST-TCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCc----CHHHHHHHcC-CCCHHHHHHHHHHHHHhcC
Confidence 4578999999999999999985 6999999999 9999999999999987765
No 24
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.29 E-value=9.7e-12 Score=84.35 Aligned_cols=48 Identities=21% Similarity=0.494 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILV 57 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~ 57 (95)
..++||.|||++|..++.+|+.. +|..||..|| |||..||++||..+.
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~-~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHLK-GRIGKQCRERWHNHL 73 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHSS-SCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhc-CCcHHHHHHHHHHhc
Confidence 45789999999999999999864 7999999999 999999999999743
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.26 E-value=8.4e-12 Score=81.86 Aligned_cols=47 Identities=28% Similarity=0.589 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILV 57 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~ 57 (95)
..++||.|||.+|..++.+|+. +|..||..|| |||..||+.||..+.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l~-gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLLP-GRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS----CHHHHHTTCT-TCCHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHHhCC----CHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4578999999999999999975 6999999999 999999999999864
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.24 E-value=2.2e-11 Score=82.72 Aligned_cols=47 Identities=17% Similarity=0.456 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILV 57 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~ 57 (95)
..+.||.|||++|..++.+|+. +|..||..|| |||.+||++||.+..
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~-~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFP-NRNARQCRDRWKNYL 56 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCT-TCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcC-CCCHHHHHHHHhhhc
Confidence 4578999999999999999975 6999999999 999999999999754
No 27
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.84 E-value=1.3e-12 Score=85.01 Aligned_cols=50 Identities=30% Similarity=0.414 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDL 60 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV 60 (95)
..++||.|||.+|..++.+|+. +|..||.+|| |||..||+.||..+....
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l~-gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR----NWSAIARMVG-SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 4568999999999999999976 6999999999 999999999999866543
No 28
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=78.47 Aligned_cols=48 Identities=21% Similarity=0.416 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDD 59 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~d 59 (95)
..++||+|||++|.+++.+|+. +|.+||..| |||..||+.||..|.++
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~----kW~~IA~~l--gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGN----DWATIGAAL--GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSS----CHHHHHHHH--TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCC----CHHHHHHHh--CCCHHHHHHHHHHHHHH
Confidence 4578999999999999999986 499999999 59999999999987654
No 29
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.18 E-value=1e-11 Score=84.78 Aligned_cols=47 Identities=11% Similarity=0.282 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILV 57 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~ 57 (95)
.++||.|||++|..++.+|+.. +|..||..|| |||..||++||...+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~-~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQ---NWPRITSFLP-NRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSC---CGGGGTTSCT-TSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcC---CHHHHHHHHC-CCCHHHHHHHHhhcc
Confidence 4689999999999999999754 7999999999 999999999998754
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.16 E-value=2.9e-11 Score=81.98 Aligned_cols=47 Identities=30% Similarity=0.591 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILV 57 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~ 57 (95)
..++||.|||.+|..++.+|+. +|..||..|| |||..+|+.||..+.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l~-gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLLP-GRTDNAVKNHWNSTM 124 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS----CHHHHGGGST-TCCHHHHHHHHHTTT
T ss_pred ccccCCHHHHHHHHHHHHHHCc----CHHHHHHHCC-CCCHHHHHHHHHHHH
Confidence 4578999999999999999975 6999999999 999999999999764
No 31
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.16 E-value=8.1e-11 Score=76.26 Aligned_cols=47 Identities=17% Similarity=0.376 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHH----cCCCCCHHHHHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKA----VGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~----vpggRT~~qv~~ry~~L~~ 58 (95)
.+||.||+..|..++.+|+.+ +|..|+.. ++ |||..||++||++|..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g---~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNAD-HRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCT-TSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CcHHHHHhhccccC-CCCHHHHHHHHHHHHH
Confidence 479999999999999999876 89999996 89 9999999999999875
No 32
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.12 E-value=1.3e-10 Score=81.21 Aligned_cols=47 Identities=23% Similarity=0.513 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEIL 56 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L 56 (95)
..++||.|||.+|..++.+|+.. +|..||..|| |||..||+.||..+
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~---~W~~Ia~~l~-~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLK-GRIGKQCRERWHNH 103 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSC---CHHHHHHTST-TCCHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHhCcc---cHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 45789999999999999999763 7999999999 99999999999875
No 33
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3.8e-10 Score=69.30 Aligned_cols=45 Identities=31% Similarity=0.457 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHH-HcCCCCCHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAK-AVGGGKTVEEVKKHYEI 55 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~-~vpggRT~~qv~~ry~~ 55 (95)
....||+||.++|+++|.+|+++ |.+||. .|| +||+.||.+.|-.
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKN----FFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSC----HHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCcc----HHHHHHHHcC-CCcHHHHHHHHhc
Confidence 45689999999999999999995 999999 499 9999999998853
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.09 E-value=1.5e-10 Score=78.94 Aligned_cols=50 Identities=22% Similarity=0.502 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDL 60 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV 60 (95)
..++||.|||.+|..++.+|+. +|..||..|| |||..+|+.||..++..-
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGS----KWSVIAKLIP-GRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCS----CHHHHTTTST-TCCHHHHHHHHHHTTGGG
T ss_pred cCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 4578999999999999999986 6999999999 999999999999865443
No 35
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.08 E-value=3.4e-10 Score=70.90 Aligned_cols=45 Identities=29% Similarity=0.475 Sum_probs=41.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHH-HcCCCCCHHHHHHHHH
Q 034427 5 SLSSTWTPKENKLFEKALALYDKETPDRWQNIAK-AVGGGKTVEEVKKHYE 54 (95)
Q Consensus 5 ~~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~-~vpggRT~~qv~~ry~ 54 (95)
.....||++|.++|+.+|.+|+++ |..|+. .|| +||+.||.+.|-
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~-~Kt~~~~v~fYY 51 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKD----FNDIRQDFLP-WKSLTSIIEYYY 51 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCS-SSCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCcc----HHHHHHHHcC-CCCHHHHHHHHH
Confidence 366789999999999999999985 999999 599 999999999996
No 36
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.04 E-value=1.9e-10 Score=80.27 Aligned_cols=47 Identities=28% Similarity=0.589 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILV 57 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~ 57 (95)
...+||.|||.+|..++.+|+. +|..||..|| |||..+|+.||..|.
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~----~W~~Ia~~l~-gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLLP-GRTDNAIKNHWNSTM 155 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTST-TCCHHHHHHHHHTTT
T ss_pred cccCCChHHHHHHHHHHHHHCC----CHHHHHHHCC-CCCHHHHHHHHHHHH
Confidence 4578999999999999999975 7999999999 999999999999764
No 37
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.01 E-value=6.3e-10 Score=84.08 Aligned_cols=46 Identities=28% Similarity=0.522 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEIL 56 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L 56 (95)
.+..||.||+++|++||.+|+. +|..||..|| |||+.||+.+|...
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~Vg-TKT~~QcKnfY~~~ 177 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGR----DFQAISDVIG-NKSVVQVKNFFVNY 177 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSS----CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 5678999999999999999987 4999999999 99999999999863
No 38
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.96 E-value=9.2e-10 Score=74.21 Aligned_cols=49 Identities=16% Similarity=0.382 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHc----CCCCCHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAV----GGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~v----pggRT~~qv~~ry~~L~~ 58 (95)
-..+||.||+..|..++.+|+.+ +|..|+..+ + |||..||++||++|..
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDAD-HRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTT-CCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccC-CCCHHHHHHHHHHHHh
Confidence 45689999999999999999886 899999976 7 8999999999999874
No 39
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.95 E-value=1.5e-09 Score=74.90 Aligned_cols=50 Identities=20% Similarity=0.389 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHc----CCCCCHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAV----GGGKTVEEVKKHYEILVDD 59 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~v----pggRT~~qv~~ry~~L~~d 59 (95)
...+||.||+..|..++.+|+.+ +|..|+... + |||..||++||++|...
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTG---RWRDVKFRAFENVH-HRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSS---CHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC---ChHHHHHHhccccC-CCCHHHHHHHHHHHHhh
Confidence 45689999999999999999876 899999985 8 89999999999998743
No 40
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.90 E-value=1.3e-09 Score=75.08 Aligned_cols=50 Identities=16% Similarity=0.371 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHc----CCCCCHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAV----GGGKTVEEVKKHYEILVDD 59 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~v----pggRT~~qv~~ry~~L~~d 59 (95)
-..+||.||+..|..++.+|+.+ +|..|+..+ + |||..||++||++|...
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G---~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGG---CHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhccccC-CCCHHHHHHHHHHHHhh
Confidence 45689999999999999999875 899999995 8 89999999999998764
No 41
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.88 E-value=3.7e-09 Score=69.55 Aligned_cols=44 Identities=25% Similarity=0.356 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEI 55 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~ 55 (95)
...||+||..+|+.++.+||+ .|.+||+.|| +||+.||..+|-.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK----~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK----NFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT----CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----CHHHHHHHcC-CCCHHHHHHHHhc
Confidence 467999999999999999988 4999999999 9999999999853
No 42
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.76 E-value=1.9e-08 Score=62.42 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHH---HcCCCCCHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAK---AVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~---~vpggRT~~qv~~ry~~L~~ 58 (95)
...+||.||+..|.+.+.+|+. .|..|+. .++ +||..+++.+|++|..
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN----HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS----CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhH----hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 5668999999999999999976 5999995 677 8999999999999874
No 43
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.71 E-value=1e-08 Score=77.98 Aligned_cols=54 Identities=15% Similarity=0.286 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCC--CChHHHHHHHHcCCCCCHHHHHHHHHH-HHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKE--TPDRWQNIAKAVGGGKTVEEVKKHYEI-LVDDL 60 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~--~~~rW~kIA~~vpggRT~~qv~~ry~~-L~~dV 60 (95)
....||.|||.+|..++.+|+.. +...|..||.+|| |||..+|+.||.. |...+
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhc
Confidence 34689999999999999999763 3334999999999 9999999999998 54443
No 44
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.59 E-value=6.4e-08 Score=79.22 Aligned_cols=45 Identities=29% Similarity=0.534 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEI 55 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~ 55 (95)
.+..||.+|..+|+++|.+|+. .|..||..|+ +||+.||+.+|..
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~Vg-TKT~~Qvk~fy~~ 423 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR----DFQAISDVIG-NKSVVQVKNFFVN 423 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3578999999999999999988 4999999999 9999999999975
No 45
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.48 E-value=5.2e-07 Score=59.68 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHc-----CCCCCHHHHHHHHHHHHHHHHHHh
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKAV-----GGGKTVEEVKKHYEILVDDLNRIE 64 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~v-----pggRT~~qv~~ry~~L~~dV~~ie 64 (95)
.+||.||...|-.+..+|+. ||-.|+... + +||++++++||-.++..+....
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl----RW~vI~DRy~~~~~~-~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFK-KRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----CHHHHHHHSCTTTSC-CCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCC----CeeeehhhhccCCCC-CCCHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999988 899999999 5 7999999999999988877544
No 46
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.38 E-value=3.7e-07 Score=71.01 Aligned_cols=56 Identities=36% Similarity=0.526 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHH----------HHHhcCC
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDL----------NRIEAGR 67 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV----------~~iesg~ 67 (95)
+.||..|...|.+|+.+|+.+ .|+.||+.|+ |||.+||+++|+.+.+.. ..||.|.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~---~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE 176 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRD---DIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGE 176 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTT---CHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHH---HHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHH
Confidence 469999999999999999885 7999999999 999999999999988887 7788873
No 47
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.36 E-value=1.5e-06 Score=57.68 Aligned_cols=52 Identities=19% Similarity=0.360 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
-.||.|||..+..+..+-+. +++.|..||+.++ +||..||.+||+.|..-+.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGA-QPHTFSVISQQLG-NKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHS-SCCHHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHc-cCCHHHHHHHHHHHHHHHH
Confidence 36999999999887777543 4679999999999 8999999999999986665
No 48
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.06 E-value=1.1e-05 Score=48.77 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCC-----CChHHHHHHH-HcCCCCCHHHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALALYDKE-----TPDRWQNIAK-AVGGGKTVEEVKKHYEIL 56 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~-----~~~rW~kIA~-~vpggRT~~qv~~ry~~L 56 (95)
.++|.|||.+|...|++|... +..-|..+|+ .+| ++|-..|++||..-
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~ 56 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKH 56 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHH
Confidence 579999999999999999432 5678999999 899 99999999999873
No 49
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.21 E-value=1e-06 Score=55.70 Aligned_cols=51 Identities=12% Similarity=0.283 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
-.||.|||..+..+..+-+. +++.|..||..++ ||+.||.+||+.|..-+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~-s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGP-SSKTFAYLAAKLD--KNPNQVSERFQQLMKLFE 65 (70)
Confidence 36999999999666655433 4679999999995 999999999999886654
No 50
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.71 E-value=0.00017 Score=47.67 Aligned_cols=53 Identities=21% Similarity=0.368 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHh
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVG----GGKTVEEVKKHYEILVDDLNRIE 64 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vp----ggRT~~qv~~ry~~L~~dV~~ie 64 (95)
..||.||-..|-.+..+|.. ||-.|+.... ..||++|+++||-.++..+....
T Consensus 31 ~~WT~eETd~LfdLc~~fdl----Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCC----CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 57999999999999999987 8999999984 26999999999999988876543
No 51
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.59 E-value=9.3e-06 Score=66.51 Aligned_cols=42 Identities=26% Similarity=0.550 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYE 54 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~ 54 (95)
..||.+|.++|+.+|.+|+++ |.+|+..|| +||+.||.++|-
T Consensus 190 d~WT~eE~~lFe~al~~yGKd----F~~I~~~lp-~Ksv~e~V~yYY 231 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGKT----FHRIQQMLP-DKSIASLVKFYY 231 (482)
T ss_dssp -----------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCcc----HHHHHHHcC-CCCHHHHHHHhc
Confidence 579999999999999999984 999999999 999999998864
No 52
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.49 E-value=0.00034 Score=44.09 Aligned_cols=60 Identities=12% Similarity=0.302 Sum_probs=46.7
Q ss_pred CCCCCHHHHHHHHHHHHh----c--CCCCChHHHHHHHHcC---CCCCHHHHHHHHHHHHHHHHHHhcC
Q 034427 7 SSTWTPKENKLFEKALAL----Y--DKETPDRWQNIAKAVG---GGKTVEEVKKHYEILVDDLNRIEAG 66 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~----~--~~~~~~rW~kIA~~vp---ggRT~~qv~~ry~~L~~dV~~iesg 66 (95)
+..||.+|-.+|..+... | +......|+.||..|. -.||++||+.+|++|...-+.+...
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~ 72 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH 72 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 467999999999888754 2 1223468999999853 2499999999999999888766553
No 53
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=97.30 E-value=0.0014 Score=40.43 Aligned_cols=55 Identities=22% Similarity=0.192 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKA--VGGGKTVEEVKKHYEILVDDLNR 62 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~--vpggRT~~qv~~ry~~L~~dV~~ 62 (95)
..-.||+|....|..|+.+++.+ ...+.+|-+. |+ |.|..+|+.|.+..+-.+++
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~-~AtPk~Il~~M~v~-gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVE-RAVPKKILDLMNVD-KLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTT-TCCHHHHHHHHCCT-TCCHHHHHHHHHHHHHHHHS
T ss_pred CCCcCCHHHHHHHHHHHHHhCCC-CCCcHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHc
Confidence 34579999999999999999843 3457888777 55 68999999999998877664
No 54
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.13 E-value=0.0009 Score=47.69 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHH--cCCCCCHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKA--VGGGKTVEEVKKHYEILVDD 59 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~--vpggRT~~qv~~ry~~L~~d 59 (95)
....||..|-..|.+++.+|+. ..+||+.|+.. +. +||..+|++.|..+...
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~-~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGG-PLERLDAIARDAELV-DKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSS-GGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCC-chhHHHHHHHHhccC-CCCHHHHHHHHHHHHHH
Confidence 3467999999999999999973 23599999975 78 89999999877765443
No 55
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.55 E-value=0.0066 Score=47.06 Aligned_cols=55 Identities=11% Similarity=0.234 Sum_probs=47.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHH------------HcCCCCCHHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAK------------AVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~------------~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
.+..||.+||..|.-+|-+|+-+.+..|++|-. .+- .||+.+|.+|-..|..-|.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~k-SRTp~el~rRc~tLi~~ie 277 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIK-SRTALELQRRCNTLITLIE 277 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHh-cCCHHHHHHHHHHHHHHHH
Confidence 346899999999999999999877789999973 455 6999999999999876654
No 56
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=96.32 E-value=0.016 Score=43.94 Aligned_cols=28 Identities=7% Similarity=0.156 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 034427 32 RWQNIAKAVGGGKTVEEVKKHYEILVDDL 60 (95)
Q Consensus 32 rW~kIA~~vpggRT~~qv~~ry~~L~~dV 60 (95)
.|..||+.+| ++|....+.||..++.+.
T Consensus 173 ~fk~ia~~~P-~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEEHA-AHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHHTT-TSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCC-CCChhhHHHHHHHHHhhc
Confidence 8999999999 999999999999865543
No 57
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.83 E-value=0.015 Score=46.30 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEIL 56 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L 56 (95)
+.||..|=..|.+|+.+|+.+ .-..||..|++|||.+||++-++.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~---d~~~IA~ev~~~Kt~eEV~~Y~~vF 169 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRN---SIQAIARELAPGKTLEEVRAYAKAF 169 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTT---CHHHHHSSCCCSSSHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHh---HHHHHHHHHccCCCHHHHHHHHHHH
Confidence 469999999999999999985 7899999997679999999665544
No 58
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=94.33 E-value=0.097 Score=41.67 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=47.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHH------------cCCCCCHHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKA------------VGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~------------vpggRT~~qv~~ry~~L~~dV~ 61 (95)
....||.+||..|.-+|-+|+-+.+..|++|-.. +- .||+.++.+|-..|..-|.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~k-SRT~~EL~rRc~tLi~~Ie 293 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFR-SRTPVELARRGNTLLQCLE 293 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHh-cCCHHHHHHHHHHHHHHHH
Confidence 3568999999999999999998777799999776 55 6999999999999987765
No 59
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.34 E-value=0.28 Score=34.57 Aligned_cols=52 Identities=12% Similarity=0.272 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcC---C--------C--CCHHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVG---G--------G--KTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vp---g--------g--RT~~qv~~ry~~L~~dV~ 61 (95)
+..||.+||..|...+.+|+-+ +|+.|-.-.- + . .+..++.+|..+|..-+.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g---~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l~ 198 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYG---SWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLS 198 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTT---CHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcC---cHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHHH
Confidence 4569999999999999999976 7999987321 0 1 246789999887765543
No 60
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.99 E-value=0.64 Score=35.23 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHH--cCCCCCHHHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKA--VGGGKTVEEVKKHYEIL 56 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~--vpggRT~~qv~~ry~~L 56 (95)
.+||..|...|.+++.+|+.- .+||+.|+.. |+ .|+...+++-|..|
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~-~~R~e~I~~dA~L~-~ks~~~i~~~~~~l 52 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNL-KEILDELIADGTLP-VKSFEKYGETYDEM 52 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSC-TTCHHHHHHTTSSC-CCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHhcccc-cCCHHHHHHHHHHH
Confidence 679999999999999999742 3499999754 66 69998888777754
No 61
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=87.49 E-value=3.6 Score=25.49 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=48.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 2 ASGSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 2 ~~~~~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
+||++....|.++...|+.....-+--+...=+.||..++ -|..||+-=|++-+...+
T Consensus 2 ~~g~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tg--Lte~qIkvWFqNrR~k~K 59 (76)
T 2ecc_A 2 SSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITG--LPRPEIIQWFGDTRYALK 59 (76)
T ss_dssp CCSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC--cCHHHhhHHhHhhHHHHH
Confidence 4677888999999999999988866555667788999997 999999988887765544
No 62
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.27 E-value=4.8 Score=26.33 Aligned_cols=59 Identities=10% Similarity=0.132 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcC---------------C----CCCHHHHHHHHHHHHHHHHHHh
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVG---------------G----GKTVEEVKKHYEILVDDLNRIE 64 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vp---------------g----gRT~~qv~~ry~~L~~dV~~ie 64 (95)
....||.++...||++...-+.-+....+.||..+. | ..|..+|..=|++-....+...
T Consensus 9 ~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr~~ 86 (102)
T 2da6_A 9 NRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAFRQ 86 (102)
T ss_dssp CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHHhh
Confidence 345799999999999987755445678899999991 0 3788888888887655555443
No 63
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=84.27 E-value=0.82 Score=34.65 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAK 38 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~ 38 (95)
..|+.+||..|...|-+|+-| .|+.|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG---~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYG---SWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCC---cHHHHhc
Confidence 469999999999999999988 7999975
No 64
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=78.45 E-value=7 Score=22.08 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 1 MASGSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 1 ~~~~~~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
|++......+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-..
T Consensus 1 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNrR~ 56 (61)
T 2hdd_A 1 MAEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELG--LNEAQIKIWFKNKRA 56 (61)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHC--cCHHHHHHHhhhhcc
Confidence 44444567799999999999988765555566788999997 999999877766443
No 65
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=75.89 E-value=5.6 Score=26.23 Aligned_cols=46 Identities=26% Similarity=0.481 Sum_probs=31.9
Q ss_pred hHHHHHHHHcCCCCC---HHHHHHHHHHHHHHHHH-HhcCCCCCCCCCCC
Q 034427 31 DRWQNIAKAVGGGKT---VEEVKKHYEILVDDLNR-IEAGRVPIPNYKSP 76 (95)
Q Consensus 31 ~rW~kIA~~vpggRT---~~qv~~ry~~L~~dV~~-iesg~v~~P~y~~~ 76 (95)
..|..||..++-..+ ...++.+|..+.-.... ++.|..|.|.--+.
T Consensus 73 ~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~g~~~p~~i~~~ 122 (125)
T 2cxy_A 73 KKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFST 122 (125)
T ss_dssp TCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHHHHHCCCCCCSCC--
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCCChhHhcc
Confidence 489999999983332 46789999975444444 57898888775444
No 66
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=74.06 E-value=9 Score=24.31 Aligned_cols=55 Identities=25% Similarity=0.474 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCC------------hHHHHHHHHc----CCCCCHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETP------------DRWQNIAKAV----GGGKTVEEVKKHYEILVDDL 60 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~------------~rW~kIA~~v----pggRT~~qv~~ry~~L~~dV 60 (95)
..+-|+++=...|..||+.||+..- .|=+-||.++ +-.||.+||-.|-+.|....
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~ 75 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 75 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence 3467999999999999999996531 1122222222 22488899999988876543
No 67
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=69.53 E-value=16 Score=23.89 Aligned_cols=47 Identities=26% Similarity=0.476 Sum_probs=30.9
Q ss_pred hHHHHHHHHcCCCCC---HHHHHHHHHHHHHHHHHHhcCC----CCCCCCCCCC
Q 034427 31 DRWQNIAKAVGGGKT---VEEVKKHYEILVDDLNRIEAGR----VPIPNYKSPG 77 (95)
Q Consensus 31 ~rW~kIA~~vpggRT---~~qv~~ry~~L~~dV~~iesg~----v~~P~y~~~~ 77 (95)
..|..||..++-..+ ...++.+|..+.-......+|. +..+++.++.
T Consensus 64 k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~~~~~~~~~~~~~~~~~~ 117 (122)
T 2eqy_A 64 RKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFLSGDSLRCLQKPNLTSDT 117 (122)
T ss_dssp TTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHHHHCCTTCCCCCCCCCCCC
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhcCCccccCCCCCCccc
Confidence 589999999972222 4688999998666665555652 3445555443
No 68
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=67.78 E-value=12 Score=24.82 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 15 NKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 15 dklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
|..+..+|.+-+. -.|..||+.++ -|...|++|.+.|.+
T Consensus 5 d~~il~~L~~~~~---~s~~~la~~lg--~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 5 DRKILRILQEDST---LAVADLAKKVG--LSTTPCWRRIQKMEE 43 (162)
T ss_dssp HHHHHHHHTTCSC---SCHHHHHHHHT--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC---CCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 4555566665433 37999999997 999999999998864
No 69
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=64.47 E-value=19 Score=21.55 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 12 PKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 12 ~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
.+.+..+..+|..-+.+..-.=..||+.++ .|...|.+|-..|.+
T Consensus 13 ~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg--vs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 13 QDQEQRILKFLEELGEGKATTAHDLSGKLG--TPKKEINRVLYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEHHHHHHHHC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCcCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 444455557888877555556789999998 999999998887754
No 70
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.35 E-value=22 Score=21.79 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 034427 9 TWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAG 66 (95)
Q Consensus 9 ~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~iesg 66 (95)
..|.++...||.....-+.-+...=+.||..++ -|..+|+-=|++-+...+..+..
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~--l~~~qV~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETK--LSRREIDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHHTSCSC
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhC--CCHHhccHhhHhHHHHHHHHhHh
Confidence 389999999999988755444455678999997 99999998888877666655544
No 71
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=64.10 E-value=18 Score=20.63 Aligned_cols=54 Identities=6% Similarity=0.050 Sum_probs=41.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 3 SGSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 3 ~~~~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
+......+|.++...||.....-+.-+...=+.||..++ -|..+|.-=|++-..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNrR~ 56 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTG--LSPRVIRVWFQNKRC 56 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHC--cCHHHHHHHhHHHHH
Confidence 333556799999999999988866555556688999997 999999877766443
No 72
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=62.84 E-value=21 Score=21.84 Aligned_cols=42 Identities=12% Similarity=0.159 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 15 NKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 15 dklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
+..+..+|...+++..-.=..||..++ -|...|.++-..|.+
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lg--vsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLG--TPKKEINRVLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHT--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 444557788888666667889999997 999999998877754
No 73
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=61.02 E-value=19 Score=20.05 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDL 60 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV 60 (95)
...+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-....
T Consensus 3 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNrR~k~ 54 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIG--LTEARIQVWFQNRRAKW 54 (60)
T ss_dssp --CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--SCHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHC--cCHHHHHHHhhhhhhhh
Confidence 45799999999999987755444455678999997 99999988777654443
No 74
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=59.24 E-value=20 Score=19.72 Aligned_cols=51 Identities=10% Similarity=0.078 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDD 59 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~d 59 (95)
...+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-...
T Consensus 4 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNrR~k 54 (58)
T 1ig7_A 4 RTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLS--LTETQVKIWFQNRRAK 54 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTT--CCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHC--cCHHHhhhhhhHhhhh
Confidence 35689999999999988765555566788999997 9999998877765443
No 75
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=58.06 E-value=7.5 Score=24.18 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=23.3
Q ss_pred hHHHHHHHHcCCCC--C-HHHHHHHHHHHHHHHHHHhc
Q 034427 31 DRWQNIAKAVGGGK--T-VEEVKKHYEILVDDLNRIEA 65 (95)
Q Consensus 31 ~rW~kIA~~vpggR--T-~~qv~~ry~~L~~dV~~ies 65 (95)
..|..||..++-.. + ...++.+|..+.-......+
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE~~~~ 95 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYELFQS 95 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHHHHHC
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHHHHhc
Confidence 57999999997222 2 56888889876554444333
No 76
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=57.19 E-value=29 Score=23.39 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 10 WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
-+.-+. .+..+|...+. -.+..||+.++ -|..-|.+|.+.|.+
T Consensus 25 ld~~d~-~IL~~L~~~~~---~s~~eLA~~lg--lS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 25 LDEIDK-KIIKILQNDGK---APLREISKITG--LAESTIHERIRKLRE 67 (171)
T ss_dssp CCHHHH-HHHHHHHHCTT---CCHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCC---CCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 344444 44466766543 36999999997 999999999998854
No 77
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=56.48 E-value=28 Score=20.53 Aligned_cols=59 Identities=10% Similarity=0.028 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAG 66 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~iesg 66 (95)
....+|.++...||.....-+.-+...=+.||..++ -|..+|.-=|++-....++.+..
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 10 ERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKIN--LPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTT--CCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHC--cCHHHhhhhhHHHhHHhhHHHHc
Confidence 345699999999999988765545566788999997 99999999888877776665544
No 78
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=55.98 E-value=26 Score=22.00 Aligned_cols=36 Identities=19% Similarity=0.444 Sum_probs=25.7
Q ss_pred hHHHHHHHHcCCCCC---HHHHHHHHHHHHHHHHHHhcC
Q 034427 31 DRWQNIAKAVGGGKT---VEEVKKHYEILVDDLNRIEAG 66 (95)
Q Consensus 31 ~rW~kIA~~vpggRT---~~qv~~ry~~L~~dV~~iesg 66 (95)
..|..||..++-..+ ...++.+|..+.-......+|
T Consensus 66 ~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~~~~~ 104 (107)
T 2lm1_A 66 RKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVYTSG 104 (107)
T ss_dssp TTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhc
Confidence 479999999972232 468899999876665554444
No 79
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=54.68 E-value=28 Score=19.99 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDL 60 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV 60 (95)
...+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-....
T Consensus 11 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~~WFqNRR~k~ 62 (70)
T 2cra_A 11 RIPYSKGQLRELEREYAANKFITKDKRRKISAATS--LSERQITIWFQNRRVKE 62 (70)
T ss_dssp CCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTC--CCHHHHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHC--CCHHHhhHhhHhHHHHh
Confidence 45699999999999988765545566788999997 99999988877755443
No 80
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.22 E-value=32 Score=20.38 Aligned_cols=52 Identities=15% Similarity=0.117 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
..+|.++...||.....-+.-+...=..||..++ -|..+|+-=|++-....+
T Consensus 22 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--L~~~qV~vWFqNRR~k~k 73 (80)
T 2dmt_A 22 TVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLG--LSQLQVKTWYQNRRMKWK 73 (80)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC--CCHHHeeeccHHHHHHhh
Confidence 3599999999999988765545566788999997 999999888877554443
No 81
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.95 E-value=30 Score=19.99 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=40.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 3 SGSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 3 ~~~~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
||+.+.+=+.++...||.....-+.-+...=..||..++ -|..+|+-=|++-+.
T Consensus 3 sg~~~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~--L~e~qVqvWFqNRRa 56 (64)
T 2e19_A 3 SGSSGQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVN--LPLDVVKKWFEKMQA 56 (64)
T ss_dssp CSCSCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC--cChhhcCcchhcccC
Confidence 465667788999999999887644334445578999997 999999887776543
No 82
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.60 E-value=35 Score=20.72 Aligned_cols=48 Identities=23% Similarity=0.383 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
.-.||.++...+...+.. .+-++.+. .-+ +-|.++|+..|+.|....-
T Consensus 9 ~~~~s~~~~~~~~~~~~~-----~~~y~iLg-v~~-~as~~eIk~aYr~la~~~H 56 (90)
T 2ys8_A 9 SASFTKEQADAIRRIRNS-----KDSWDMLG-VKP-GASRDEVNKAYRKLAVLLH 56 (90)
T ss_dssp CCCCCHHHHHHHHHHHTC-----SSHHHHHT-CCT-TCCHHHHHHHHHHHHHHHC
T ss_pred ccCCCHHHHHHHHHHhcC-----CCHHHHcC-cCC-CCCHHHHHHHHHHHHHHHC
Confidence 346999999888765431 23344443 334 7899999999999886653
No 83
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.59 E-value=32 Score=20.28 Aligned_cols=53 Identities=8% Similarity=0.046 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHhc----CCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALALY----DKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNR 62 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~----~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ 62 (95)
..+|.++...||...... +.-+...=+.||..++ -|..+|+-=|++-....+.
T Consensus 13 t~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lg--L~~~qV~vWFqNrR~k~rk 69 (80)
T 2da4_A 13 TQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELN--VDCEIVRTWIGNRRRKYRL 69 (80)
T ss_dssp CCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhC--CCHHHhhHhHHHHHHHHhh
Confidence 458999999999998765 3323455678999997 9999999888887665554
No 84
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=53.51 E-value=27 Score=19.38 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEIL 56 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L 56 (95)
...+|.++...||......+.-+...=..||..++ -|..+|.-=|++-
T Consensus 9 Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~--l~~~qV~~WFqNr 56 (61)
T 1akh_A 9 KSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCG--ITPLQVRVWFINK 56 (61)
T ss_dssp ---CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHC--cCHHHHHHHHHHH
Confidence 35689999999999998876555667788999997 9999998766653
No 85
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=53.29 E-value=25 Score=23.14 Aligned_cols=31 Identities=10% Similarity=0.249 Sum_probs=25.0
Q ss_pred ChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 30 PDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 30 ~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
...|..||..++ --+...++.+|..+.-...
T Consensus 69 ~k~W~~Va~~lg-~~~~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 69 TQQWSMVAQRLQ-ISDYQQLESIYFRILLPYE 99 (123)
T ss_dssp SHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHC-CChHHHHHHHHHHHHHHHH
Confidence 469999999998 6668899999998655444
No 86
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=53.08 E-value=42 Score=21.49 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 10 WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
-+.-+.++| .+|...+. -.+..||+.++ -|..-|.+|.+.|.+
T Consensus 7 ld~~d~~il-~~L~~~~~---~s~~ela~~lg--~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 7 LDRVDMQLV-KILSENSR---LTYRELADILN--TTRQRIARRIDKLKK 49 (151)
T ss_dssp CCHHHHHHH-HHHHHCTT---CCHHHHHHHTT--SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHHHHcCC---CCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 445555554 56666543 47999999997 999999999998864
No 87
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=51.73 E-value=34 Score=19.98 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
..+|.++...||.....-+.-+...=+.||..++ -|..+|+-=|++-....+
T Consensus 22 t~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNrR~k~k 73 (80)
T 2da3_A 22 TTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVG--LKKRVVQVWFQNTRARER 73 (80)
T ss_dssp SSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHC--cCHHHhHHHhHHHHHhHh
Confidence 3589999999999987765445556688999997 999999888877655444
No 88
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=51.58 E-value=32 Score=19.66 Aligned_cols=54 Identities=7% Similarity=0.151 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
....+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-....+
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~~WFqNrR~k~k 63 (70)
T 2da1_A 10 PRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSG--LPQKVIKHWFRNTLFKER 63 (70)
T ss_dssp CSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHC--CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhC--CCHHHHHHHhhhhhHHHh
Confidence 345699999999999987755444556789999997 999999888877655444
No 89
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=51.27 E-value=8.7 Score=25.48 Aligned_cols=20 Identities=35% Similarity=0.700 Sum_probs=17.4
Q ss_pred HHHHHHcCCCCCHHHHHHHHH
Q 034427 34 QNIAKAVGGGKTVEEVKKHYE 54 (95)
Q Consensus 34 ~kIA~~vpggRT~~qv~~ry~ 54 (95)
..||..+. |||++|+|+.|.
T Consensus 115 ~~vA~~ik-gkt~eeiR~~f~ 134 (141)
T 1fs1_B 115 KTVANMIK-GKTPEEIRKTFN 134 (141)
T ss_dssp HHHHHHHT-TCCHHHHHHHTC
T ss_pred HHHHHHHc-CCCHHHHHHHcC
Confidence 57999999 899999988764
No 90
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=51.16 E-value=33 Score=19.63 Aligned_cols=53 Identities=4% Similarity=0.104 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDL 60 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV 60 (95)
....+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-....
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~~WFqNrR~k~ 62 (70)
T 2da2_A 10 SRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLN--LPTRVIVVWFQNARQKA 62 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSC--CCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC--CCHHHhHHhhHhhhHHH
Confidence 345699999999999988765555566788999997 99999988777655443
No 91
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.88 E-value=35 Score=19.56 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
....+|.++...||.....-+.-+...=+.||..++ -|..+|.-=|++-....+
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~~WFqNrR~k~r 63 (70)
T 2dmu_A 10 HRTIFTDEQLEALENLFQETKYPDVGTREQLARKVH--LREEKVEVWFKNRRAKWR 63 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHC--CCHHHeehcccccccccc
Confidence 344699999999999988865555566789999997 999999887777554443
No 92
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=49.62 E-value=32 Score=19.06 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHh---cCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALAL---YDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~---~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
..+|.++...||..+.. .+.-+...=..||..++ -|..+|..=|++-..
T Consensus 3 ~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~g--l~~~qV~~WFqNrR~ 54 (60)
T 1k61_A 3 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTS--LSRIQIKNWVSNRRR 54 (60)
T ss_dssp CSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHC--CCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHC--cCHHHHHHHHHHHHc
Confidence 56899999999999988 55445555678999997 999999887776443
No 93
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.54 E-value=38 Score=19.87 Aligned_cols=56 Identities=9% Similarity=0.205 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRI 63 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~i 63 (95)
....+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-....++.
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 10 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTG--LTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC--CCHHHhhHccHHHHHHHHHH
Confidence 345799999999999988766555567789999997 99999988777755554443
No 94
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=49.38 E-value=36 Score=19.64 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhc
Q 034427 5 SLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEA 65 (95)
Q Consensus 5 ~~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ies 65 (95)
.....+|.++...||.....-+.-+...=..||..++ -|..+|+-=|++-....++.+.
T Consensus 8 ~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 8 GIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITG--LTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC--cCHHHeeeCChhHhHHHHhhCc
Confidence 3566799999999999987754333445568999997 9999999888887766665444
No 95
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=48.51 E-value=40 Score=19.89 Aligned_cols=54 Identities=7% Similarity=0.052 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
....+|.++...||.....-+.-+...=..||..++ -|..+|+-=|++-....+
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~vWFqNRR~k~k 63 (80)
T 2cue_A 10 NRTSFTQEQIEALEKEFERTHYPDVFARERLAAKID--LPEARIQVWFSNRRAKWR 63 (80)
T ss_dssp CCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhC--CCHHHhhHHHHHHHHHHH
Confidence 344699999999999987755445566788999997 999999877766444433
No 96
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=48.45 E-value=36 Score=19.32 Aligned_cols=54 Identities=11% Similarity=0.231 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNR 62 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ 62 (95)
...+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-....+.
T Consensus 5 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNrR~k~kr 58 (67)
T 2k40_A 5 RTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLN--LELDRIQIWFQNRRAKLKR 58 (67)
T ss_dssp SCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHC--cCHHHhhHhhHhHHHHHhH
Confidence 45789999999999987755545566788999997 9999999888876655543
No 97
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=48.30 E-value=52 Score=21.15 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 10 WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
-+.-+.++| .+|...+. -.+..||+.++ -|..-|.+|.+.|.+
T Consensus 5 ld~~~~~il-~~L~~~~~---~s~~ela~~lg--~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 5 LDEIDKKII-KILQNDGK---APLREISKITG--LAESTIHERIRKLRE 47 (151)
T ss_dssp CCHHHHHHH-HHHHHCTT---CCHHHHHHHHC--SCHHHHHHHHHHHHH
T ss_pred cCHHHHHHH-HHHHHcCC---CCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 344455544 56666543 36999999997 999999999998854
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=47.98 E-value=33 Score=18.75 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
...++.|...|.- .|-.+ ..+..||..++ .|..-|+.+.......++
T Consensus 14 ~~L~~~~r~il~l---~~~~g--~s~~eIA~~lg--is~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 14 ADLTTDQREALLL---TQLLG--LSYADAAAVCG--CPVGTIRSRVARARDALL 60 (70)
T ss_dssp TSSCHHHHHHHHH---HHTSC--CCHHHHHHHHT--SCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHH---HHHcC--CCHHHHHHHHC--cCHHHHHHHHHHHHHHHH
Confidence 3577777777743 23223 25899999997 999999988887766665
No 99
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=47.81 E-value=36 Score=19.13 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
....+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-....+
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~~WFqNrR~k~k 59 (63)
T 2h1k_A 6 TRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLN--LTERHIKIWFQNRRMKWK 59 (63)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC--cCHHHhhHHHHhhhhhhh
Confidence 445789999999999987755445556688999997 999999887776554444
No 100
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=47.01 E-value=51 Score=20.65 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 034427 14 ENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDD 59 (95)
Q Consensus 14 Edklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~d 59 (95)
+.++| .+|...+. -.+..||+.++ -|..-|.++.+.|.+.
T Consensus 6 ~~~il-~~L~~~~~---~~~~ela~~lg--~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 6 DKIIL-EILEKDAR---TPFTEIAKKLG--ISETAVRKRVKALEEK 45 (141)
T ss_dssp HHHHH-HHHHHCTT---CCHHHHHHHHT--SCHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHcCC---CCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 33444 46665433 37999999997 9999999999988643
No 101
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.74 E-value=40 Score=19.34 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDD 59 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~d 59 (95)
...+|.++...||.....-+.-+...=+.||..++ -|..+|.-=|++-...
T Consensus 11 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNrR~k 61 (70)
T 2djn_A 11 RTIYSSFQLAALQRRFQKTQYLALPERAELAASLG--LTQTQVKIWFQNKRSK 61 (70)
T ss_dssp SCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSS--CCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhC--CCHHHHHHHHHHHhhh
Confidence 44689999999999987755444556688999997 9999998877765543
No 102
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=46.14 E-value=25 Score=23.66 Aligned_cols=39 Identities=13% Similarity=0.207 Sum_probs=29.2
Q ss_pred hHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHHHhcCCCC
Q 034427 31 DRWQNIAKAVGGGKT----VEEVKKHYEILVDDLNRIEAGRVP 69 (95)
Q Consensus 31 ~rW~kIA~~vpggRT----~~qv~~ry~~L~~dV~~iesg~v~ 69 (95)
..|..||..++-..+ ...++.+|..+.-.......|..+
T Consensus 86 ~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~ 128 (145)
T 2kk0_A 86 KLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSN 128 (145)
T ss_dssp TCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCC
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 589999999972222 568999999887777777777543
No 103
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=46.05 E-value=41 Score=19.28 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
...+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-....+
T Consensus 11 R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNrR~k~r 63 (70)
T 2e1o_A 11 QVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQ--LSERQVKTWFQNRRAKWR 63 (70)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHC--CCHHHhhHhhHhhHhhcC
Confidence 44699999999999988765555566788999997 999999888877554443
No 104
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=45.91 E-value=15 Score=25.29 Aligned_cols=41 Identities=20% Similarity=0.371 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCCC----ChHHHHHHHHcCCCCCHHHHHHHHH
Q 034427 13 KENKLFEKALALYDKET----PDRWQNIAKAVGGGKTVEEVKKHYE 54 (95)
Q Consensus 13 eEdklle~aL~~~~~~~----~~rW~kIA~~vpggRT~~qv~~ry~ 54 (95)
+...+|+-.++..--+- .--=..||..+. |||++|+|..|.
T Consensus 102 d~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik-gktpeeiR~~f~ 146 (169)
T 3v7d_A 102 DQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR-GRSPEEIRRTFN 146 (169)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc-CCCHHHHHHHcC
Confidence 44566666666532221 123467999999 999999998765
No 105
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=45.84 E-value=11 Score=25.48 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=17.3
Q ss_pred HHHHHHcCCCCCHHHHHHHHH
Q 034427 34 QNIAKAVGGGKTVEEVKKHYE 54 (95)
Q Consensus 34 ~kIA~~vpggRT~~qv~~ry~ 54 (95)
..||..+. |||++|+|..|.
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~ 138 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN 138 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT
T ss_pred HHHHHHHc-CCCHHHHHHHcC
Confidence 57999999 999999998664
No 106
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.00 E-value=45 Score=19.46 Aligned_cols=54 Identities=9% Similarity=0.096 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNR 62 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ 62 (95)
....|.++...||.....-+.-+...=+.||..++ -|..+|+-=|++-....++
T Consensus 12 R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~--l~~~qV~~WFqNrR~k~kk 65 (76)
T 2dn0_A 12 KNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTG--LSTREVRKWFSDRRYHCRN 65 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHC--CCHHHHHHHHHHHHHHSSS
T ss_pred CccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC--CChHHhhHHhHHHhHHHHH
Confidence 45799999999999988755444556678999997 9999999888876655553
No 107
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=44.65 E-value=39 Score=18.65 Aligned_cols=48 Identities=21% Similarity=0.278 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
.....|+.|.+.|.- + + .+. .-..||..++ -|..-|+.|...+...+.
T Consensus 8 ~~~~L~~~e~~il~~-~--~-~g~--s~~eIA~~l~--is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 8 SKPLLTKREREVFEL-L--V-QDK--TTKEIASELF--ISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCCHHHHHHHHH-H--T-TTC--CHHHHHHHHT--SCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHH-H--H-cCC--CHHHHHHHHC--CCHHHHHHHHHHHHHHHC
Confidence 345689999998866 3 2 121 4789999998 999999999988777664
No 108
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=44.47 E-value=52 Score=20.07 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcC-------------CCCCHHHHHHHHHHHHHHHHHHhcC
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVG-------------GGKTVEEVKKHYEILVDDLNRIEAG 66 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vp-------------ggRT~~qv~~ry~~L~~dV~~iesg 66 (95)
....||.++...||.....-+.-+...=+.||..++ +.-|..+|..=|++-....++....
T Consensus 10 ~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 10 SRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp CSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 345799999999999988855445566788888883 2278999998888877766665554
No 109
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=44.33 E-value=45 Score=19.33 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNR 62 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ 62 (95)
....+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-....++
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~vWFqNRR~k~kk 64 (73)
T 2l7z_A 10 KRVPYTKVQLKELEREYATNKFITKDKRRRISATTN--LSERQVTIWFQNRRVKEKK 64 (73)
T ss_dssp CCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHT--SCSHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHC--CCHHHHHHHHHHHhHHHHH
Confidence 345689999999999988765555566788999997 9999998888776655543
No 110
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=44.11 E-value=45 Score=19.21 Aligned_cols=52 Identities=10% Similarity=0.118 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHH---hcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALA---LYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 8 ~~WT~eEdklle~aL~---~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
+..|.+.-..|+..+. ..|--+...=+.+|..++ -|..||..=|++-...++
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~--l~~~qV~~WFqNrR~r~k 57 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTG--LTILQVNNWFINARRRIV 57 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhC--cCHHHhhhhhHHHHHHHh
Confidence 4689999999999999 444444556688999997 999999987777665544
No 111
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=44.00 E-value=48 Score=19.52 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
...+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-....+
T Consensus 22 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~~WFqNrR~k~r 74 (81)
T 1fjl_A 22 RTTFSASQLDELERAFERTQYPDIYTREELAQRTN--LTEARIQVWFQNRRARLR 74 (81)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHC--cCHHHHHHHHHHHhhhhh
Confidence 34699999999999988765545556688999997 999999887776554444
No 112
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=43.85 E-value=42 Score=18.78 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHH---HhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKAL---ALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEIL 56 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL---~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L 56 (95)
....+|.++...|+..+ ...+.-+...=+.||..++ -|..+|.-=|++-
T Consensus 6 ~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~--L~~~qV~~WFqNr 57 (64)
T 1du6_A 6 EGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCG--ITVSQVSNWFGNK 57 (64)
T ss_dssp CCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHC--cCHHHHHHHHHHH
Confidence 44578999999999998 4444444556688999997 9999998877653
No 113
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=42.36 E-value=16 Score=23.59 Aligned_cols=26 Identities=12% Similarity=0.344 Sum_probs=21.3
Q ss_pred hHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034427 31 DRWQNIAKAVGGGKTVEEVKKHYEILV 57 (95)
Q Consensus 31 ~rW~kIA~~vpggRT~~qv~~ry~~L~ 57 (95)
..|..||..++ --+...++.+|..+.
T Consensus 71 ~~W~~Va~~lg-~~~~~~Lr~~Y~k~L 96 (116)
T 2li6_A 71 QQWSMVAQRLQ-ISDYQQLESIYFRIL 96 (116)
T ss_dssp TCHHHHHHHHT-SCCTTHHHHHHHHHH
T ss_pred CcHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 47999999998 555788999998754
No 114
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=42.11 E-value=49 Score=21.58 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=26.9
Q ss_pred hHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHHHhcCC
Q 034427 31 DRWQNIAKAVGGGKT----VEEVKKHYEILVDDLNRIEAGR 67 (95)
Q Consensus 31 ~rW~kIA~~vpggRT----~~qv~~ry~~L~~dV~~iesg~ 67 (95)
..|..||..++-..+ ...++.+|..+.-.......|.
T Consensus 74 k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~~~~ 114 (128)
T 1c20_A 74 KLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNL 114 (128)
T ss_dssp TTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHHHCC
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHcC
Confidence 479999999973332 5788999998766666555553
No 115
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.08 E-value=44 Score=21.66 Aligned_cols=28 Identities=18% Similarity=0.515 Sum_probs=22.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 32 RWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 32 rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
+|+.-.+ +. |.|.++.++.|..|++.+.
T Consensus 61 Kw~AW~~-l~-gms~eeAm~~YI~lv~~l~ 88 (109)
T 2cop_A 61 KWEAWKA-LG-DSSPSQAMQEYIAVVKKLD 88 (109)
T ss_dssp HHHHHHS-CT-TCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHh
Confidence 4555443 46 8999999999999999886
No 116
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=41.87 E-value=68 Score=20.65 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=23.5
Q ss_pred hHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 034427 31 DRWQNIAKAVGGGKTVEEVKKHYEILVDDLNR 62 (95)
Q Consensus 31 ~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ 62 (95)
-....||..++ .|...|+.+.......++.
T Consensus 157 ~s~~EIA~~lg--is~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 157 LSYEEIAAIMD--CPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp CCHHHHHHHTT--SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHC--CCHHHHHHHHHHHHHHHHH
Confidence 35789999997 8999998888876666653
No 117
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=41.54 E-value=66 Score=20.43 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 17 LFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 17 lle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
.+..+|...+ +-.+..||+.++ -|..-|.+|.+.|.+
T Consensus 7 ~il~~L~~~~---~~~~~ela~~lg--~s~~tv~~~l~~L~~ 43 (150)
T 2pn6_A 7 RILKILQYNA---KYSLDEIAREIR--IPKATLSYRIKKLEK 43 (150)
T ss_dssp HHHHHHTTCT---TSCHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 3444565543 347999999997 999999999998854
No 118
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=41.53 E-value=68 Score=20.54 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 034427 11 TPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDD 59 (95)
Q Consensus 11 T~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~d 59 (95)
+.-+.+ +..+|...+. -.+..||+.++ -|..-|.+|.+.|.+.
T Consensus 7 d~~d~~-il~~L~~~~~---~s~~ela~~lg--~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 7 DNLDRG-ILEALMGNAR---TAYAELAKQFG--VSPETIHVRVEKMKQA 49 (152)
T ss_dssp CHHHHH-HHHHHHHCTT---SCHHHHHHHHT--SCHHHHHHHHHHHHHH
T ss_pred CHHHHH-HHHHHHHcCC---CCHHHHHHHHC--cCHHHHHHHHHHHHHc
Confidence 334444 4456666543 36999999997 9999999999988643
No 119
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=41.29 E-value=78 Score=21.20 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
...+|.++...||......+.-+...=..||..++ -|..+|+-=|++-+...+
T Consensus 105 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--L~~~qV~vWFqNRR~k~k 157 (160)
T 1e3o_C 105 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLN--MEKEVIRVWFSNRRQKEK 157 (160)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHC--CChHHhhHhhHHhhhhhh
Confidence 34689999999999988866555566788999997 999999887777554433
No 120
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=40.88 E-value=72 Score=20.68 Aligned_cols=44 Identities=11% Similarity=0.116 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 034427 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDD 59 (95)
Q Consensus 10 WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~d 59 (95)
-+.-+.++| .+|...+. -.+..||+.++ -|..-|.+|.+.|.+.
T Consensus 8 ld~~~~~il-~~L~~~~~---~s~~ela~~lg--~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 8 LDKTDIKIL-QVLQENGR---LTNVELSERVA--LSPSPCLRRLKQLEDA 51 (162)
T ss_dssp CCHHHHHHH-HHHHHCTT---CCHHHHHHHHT--SCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHH-HHHHHcCC---CCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 455555555 46666544 36999999997 9999999999988643
No 121
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=39.94 E-value=48 Score=18.32 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
...+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-..
T Consensus 5 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNrR~ 54 (60)
T 1jgg_A 5 RTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLN--LPESTIKVWFQNRRM 54 (60)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHC--cCHHHHHHhhHHHHh
Confidence 45689999999999988765545566788999997 999999877776443
No 122
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=39.86 E-value=66 Score=19.96 Aligned_cols=57 Identities=9% Similarity=0.036 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAG 66 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~iesg 66 (95)
...|.++...||.....-+--+...=..||..++ -|..||+-=|++-+...++.|..
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lg--Lte~qVkvWFqNRR~k~rk~~~~ 72 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTK--LTRREIDAWFTEKKKSKALKEEK 72 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHSCCSC
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC--cChHHCeecccccchHHHHHHHH
Confidence 4689999999999987755555567778999997 99999999888877777665554
No 123
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=39.79 E-value=16 Score=24.45 Aligned_cols=20 Identities=35% Similarity=0.700 Sum_probs=17.2
Q ss_pred HHHHHHcCCCCCHHHHHHHHH
Q 034427 34 QNIAKAVGGGKTVEEVKKHYE 54 (95)
Q Consensus 34 ~kIA~~vpggRT~~qv~~ry~ 54 (95)
..||..+. |||++|+|..|.
T Consensus 120 ~~va~~i~-gkt~eeir~~f~ 139 (159)
T 2ast_A 120 KTVANMIK-GKTPEEIRKTFN 139 (159)
T ss_dssp HHHHHHHS-SCCHHHHHHHTT
T ss_pred HHHHHHHc-CCCHHHHHHHcC
Confidence 46899999 999999998764
No 124
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=39.56 E-value=47 Score=18.17 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
..+|.++...||.....-+.-+...=..||..++ -|..+|+-=|++-..
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~~WFqNRR~ 50 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALR--MTDAQVKTWFQNRRT 50 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhC--cCHHHhhHhhHHhhh
Confidence 4589999999999987755444455578999997 999999877766443
No 125
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=39.04 E-value=54 Score=18.67 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhc
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEA 65 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ies 65 (95)
....+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-....+....
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 5 TRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLA--LGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC--cCHHHhhHhhHHHHHHHHHHhc
Confidence 345789999999999987755445567789999997 9999998877776555554443
No 126
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=38.65 E-value=54 Score=18.61 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHh
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIE 64 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ie 64 (95)
....+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-....+..+
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 6 QRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTN--LTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp SCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTT--SCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHC--cCHHHHHHHHHHHhHHHHHHh
Confidence 345789999999999987754434445678999997 999999888877655555443
No 127
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=38.61 E-value=27 Score=22.57 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=25.5
Q ss_pred hHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHHHhcC
Q 034427 31 DRWQNIAKAVGGGKT----VEEVKKHYEILVDDLNRIEAG 66 (95)
Q Consensus 31 ~rW~kIA~~vpggRT----~~qv~~ry~~L~~dV~~iesg 66 (95)
..|..||..++ --+ ...++.+|..+.-.......|
T Consensus 62 ~~W~~Va~~lg-~~~~~~a~~~Lk~~Y~k~L~~yE~~~~~ 100 (117)
T 2jrz_A 62 RRWARVAQRLN-YPPGKNIGSLLRSHYERIVYPYEMYQSG 100 (117)
T ss_dssp TTHHHHHHHTT-CCTTCTHHHHHHHHHHHTTHHHHHHHHH
T ss_pred CcHHHHHHHhC-CCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999997 332 568999999865555555554
No 128
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=38.41 E-value=63 Score=19.30 Aligned_cols=53 Identities=4% Similarity=0.026 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHhc---CCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALY---DKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~---~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
....|.++...|+..+..| |--+...=+.||..++ -|..||..=|++-...++
T Consensus 11 R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~g--Ls~~qV~~WFqNrR~r~k 66 (83)
T 2dmn_A 11 KGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTN--LSLLQISNWFINARRRIL 66 (83)
T ss_dssp CSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTH
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHC--cCHHHhhHHhhhhHhhhc
Confidence 3469999999999998875 5445667788999997 999999988887554443
No 129
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=37.32 E-value=72 Score=19.65 Aligned_cols=28 Identities=11% Similarity=0.292 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 32 RWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 32 rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
....||..++ .|..-|+.+.......++
T Consensus 126 s~~EIA~~lg--is~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 126 SYREIATILS--KNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp CHHHHHHHHT--CCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHC--CCHHHHHHHHHHHHHHHH
Confidence 5789999997 898888888876555544
No 130
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=37.31 E-value=79 Score=21.09 Aligned_cols=46 Identities=7% Similarity=0.059 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
...-+.-+.++ ..+|..-+. -.+..||+.++ -|..-|.+|.+.|.+
T Consensus 12 ~~~ld~~d~~I-L~~L~~~~~---~s~~eLA~~lg--lS~~tv~~~l~~L~~ 57 (171)
T 2ia0_A 12 EIHLDDLDRNI-LRLLKKDAR---LTISELSEQLK--KPESTIHFRIKKLQE 57 (171)
T ss_dssp --CCCHHHHHH-HHHHHHCTT---CCHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHH-HHHHHHcCC---CCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 33445555544 456665443 36999999997 999999999998854
No 131
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=36.59 E-value=57 Score=18.26 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 10 WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 10 WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
.|+.|...|.- + + .+. .-..||..++ .|..-|+.|...+...+.
T Consensus 17 L~~~e~~vl~l-~--~-~g~--s~~eIA~~l~--is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSA-V--V-AGL--PNKSIAYDLD--ISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHH-H--T-TTC--CHHHHHHHTT--SCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHH-H--H-cCC--CHHHHHHHHC--cCHHHHHHHHHHHHHHHc
Confidence 46667766644 2 2 222 4679999997 899999998888776654
No 132
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.11 E-value=65 Score=18.77 Aligned_cols=57 Identities=12% Similarity=0.157 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAG 66 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~iesg 66 (95)
...|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-....+..+..
T Consensus 12 ~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 12 KERAPEQLRALESSFAQNPLPLDEELDRLRSETK--MTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHC--CCHHHHHHHHHHHTTHHHHSSCS
T ss_pred ccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhC--CCHHHhhHhhHHHHHHHHHhhhc
Confidence 3589999999999987755444455578999997 99999998888876666655443
No 133
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=36.10 E-value=19 Score=22.83 Aligned_cols=43 Identities=28% Similarity=0.608 Sum_probs=26.3
Q ss_pred hHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHHHhcC--CCCCCCC
Q 034427 31 DRWQNIAKAVGGGKT----VEEVKKHYEILVDDLNRIEAG--RVPIPNY 73 (95)
Q Consensus 31 ~rW~kIA~~vpggRT----~~qv~~ry~~L~~dV~~iesg--~v~~P~y 73 (95)
..|..||..++-..+ ...++.+|..+.-.....-+| ..++|..
T Consensus 55 ~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~~~~~~~p~~ 103 (107)
T 1ig6_A 55 RQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLPPI 103 (107)
T ss_dssp TTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHHTSSSSCTT
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 589999999973222 357888898754433333333 3455543
No 134
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=35.13 E-value=41 Score=20.84 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=21.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 32 RWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 32 rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
+|+.=.+ ++ |.|.++.++.|..+++.+.
T Consensus 57 Kw~AW~~-l~-gms~eeA~~~YI~~v~~l~ 84 (89)
T 1hbk_A 57 KYEAWKS-VE-NLNREDAQKRYVDIVSEIF 84 (89)
T ss_dssp HHHHHHH-TT-TCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHc
Confidence 3444333 46 8999999999999998874
No 135
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=35.13 E-value=98 Score=20.55 Aligned_cols=52 Identities=8% Similarity=0.108 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDL 60 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV 60 (95)
...+|.++...||......+.-+...=..||..++ -|..+|+-=|++-+...
T Consensus 101 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~--L~~~qV~~WFqNrR~r~ 152 (164)
T 2d5v_A 101 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLG--LELSTVSNFFMNARRRS 152 (164)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHHHTS
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC--cCHHHhhhcChhhhccc
Confidence 45699999999999988876556667789999997 99999998888765443
No 136
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=34.97 E-value=71 Score=18.89 Aligned_cols=53 Identities=11% Similarity=0.163 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHH---HhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKAL---ALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 7 ~~~WT~eEdklle~aL---~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
...+|.++...|+..+ ...+.-+...=..||..++ -|..+|..=|++-....+
T Consensus 5 R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~--l~~~qV~~WFqNrR~r~k 60 (87)
T 1b72_B 5 RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCG--ITVSQVSNWFGNKRIRYK 60 (87)
T ss_dssp CCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHC--cCHHHHHHHHHHHHHHhh
Confidence 4568999999999998 4444444556678999997 999999888777554444
No 137
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=34.28 E-value=91 Score=19.92 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHH
Q 034427 9 TWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHY 53 (95)
Q Consensus 9 ~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry 53 (95)
.+++++-..+...|..++ -+..-.-+|++.+| .|.+|++.=|
T Consensus 46 k~~~e~a~~l~e~L~~~~-l~e~~a~~I~nl~P--~t~dElraii 87 (107)
T 1go3_F 46 KLDKEEAKKLVEELISLG-IDEKTAVKIADILP--EDLDDLRAIY 87 (107)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCHHHHHHHHHHCC--CSHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHhCC-CCHHHHHHHHHhCC--CCHHHHHHHH
Confidence 357777777777776665 34566899999999 9999998644
No 138
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=34.03 E-value=71 Score=18.59 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
...+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-....+
T Consensus 13 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNRR~k~k 65 (77)
T 1nk2_P 13 RVLFTKAQTYELERRFRQQRYLSAPEREHLASLIR--LTPTQVKIWFQNHRYKTK 65 (77)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC--CCHHHHHHHhHHhhcchh
Confidence 34689999999999988755445566788999997 999999888877544443
No 139
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=33.69 E-value=47 Score=21.51 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 034427 40 VGGGKTVEEVKKHYEILVDDLNRIEAG 66 (95)
Q Consensus 40 vpggRT~~qv~~ry~~L~~dV~~iesg 66 (95)
++ |.|.++.++.|..+++.+... +|
T Consensus 68 l~-gmS~eeA~~~YI~~v~~l~~~-~~ 92 (106)
T 3fp5_A 68 VE-GTSKEVAYQKYVEKLLEILKK-AD 92 (106)
T ss_dssp TT-TCCHHHHHHHHHHHHHHHHHH-HC
T ss_pred cc-CCCHHHHHHHHHHHHHHHhcc-cC
Confidence 46 899999999999999988755 44
No 140
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=33.07 E-value=74 Score=18.53 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
...|..|.+.|.-. + .+ ..-..||..++ -|..-|+.|...+...+.
T Consensus 20 ~~Lt~~e~~vl~l~---~-~g--~s~~eIA~~l~--is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKLI---A-QG--LPNKMIARRLD--ITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHHH---T-TT--CCHHHHHHHHT--SCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHH---H-cC--CCHHHHHHHHC--cCHHHHHHHHHHHHHHHc
Confidence 35788888888652 2 22 24789999997 999999999888776664
No 141
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=32.56 E-value=50 Score=20.57 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=21.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 034427 33 WQNIAKAVGGGKTVEEVKKHYEILVDDLNR 62 (95)
Q Consensus 33 W~kIA~~vpggRT~~qv~~ry~~L~~dV~~ 62 (95)
|+.=.+ ++ |.|.+|.++.|..+++.+..
T Consensus 58 w~AW~~-l~-g~s~eeA~~~Yi~~v~~l~~ 85 (89)
T 3epy_A 58 WEAWNL-KK-GLSTEDATSAYISKAKELIE 85 (89)
T ss_dssp HHHHHT-TT-TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-hh-CCCHHHHHHHHHHHHHHHhh
Confidence 444333 67 89999999999999988763
No 142
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=31.93 E-value=68 Score=17.76 Aligned_cols=49 Identities=6% Similarity=0.100 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILV 57 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~ 57 (95)
...+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-.
T Consensus 7 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~~WFqNrR 55 (62)
T 2vi6_A 7 RTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILN--LSYKQVKTWFQNQR 55 (62)
T ss_dssp -CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHT--CCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC--CCHHHhhHHhHHhh
Confidence 45689999999999987755444445578999997 99999987776543
No 143
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=31.92 E-value=80 Score=18.53 Aligned_cols=51 Identities=6% Similarity=0.108 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDD 59 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~d 59 (95)
...+|.++...||.+...-+.-+...=..||..++ -|..+|.-=|++-...
T Consensus 26 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~vWFqNRR~k 76 (84)
T 2kt0_A 26 RTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILN--LSYKQVKTWFQNQRMK 76 (84)
T ss_dssp SSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTT--CCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHHH
Confidence 34689999999999987755444455578999997 9999998777765443
No 144
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=31.83 E-value=19 Score=18.21 Aligned_cols=17 Identities=24% Similarity=0.565 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034427 46 VEEVKKHYEILVDDLNR 62 (95)
Q Consensus 46 ~~qv~~ry~~L~~dV~~ 62 (95)
++++++.|..|++.|+.
T Consensus 3 ~e~mr~Q~~~lveKvq~ 19 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQA 19 (26)
T ss_dssp HHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788999999998873
No 145
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=31.80 E-value=61 Score=18.65 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHH
Q 034427 15 NKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEI 55 (95)
Q Consensus 15 dklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~ 55 (95)
.++|...+.+++....-.|+.||..-. |-|.-|+..-.+.
T Consensus 9 ~~Il~~~l~~~~~~~~~dl~~la~~t~-G~SGADi~~l~~e 48 (78)
T 3kw6_A 9 LDILKIHSRKMNLTRGINLRKIAELMP-GASGAEVKGVCTE 48 (78)
T ss_dssp HHHHHHHHTTSEECTTCCHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCccCHHHHHHHcC-CCCHHHHHHHHHH
Confidence 346777777776544557999999999 9999998764443
No 146
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=31.69 E-value=89 Score=19.02 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRI 63 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~i 63 (95)
...+|.++...||.....-+.-+...=..||..++ -|..+|+-=|++-....++.
T Consensus 38 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 38 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLE--LNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHHHH
T ss_pred CcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhC--CCHHHhHHHHHHHhHHHhHH
Confidence 45699999999999987654444455678999997 99999988887765555443
No 147
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=31.55 E-value=1.2e+02 Score=20.49 Aligned_cols=54 Identities=11% Similarity=0.059 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNR 62 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ 62 (95)
...+|.++...||.....-+.-+...=..||..++ -|..+|+-=|++-+...++
T Consensus 103 Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~--L~~~qV~vWFqNRR~k~kr 156 (164)
T 2xsd_C 103 RTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQ--LEKEVVRVWFCNRRQKEKR 156 (164)
T ss_dssp ---CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHTB
T ss_pred ceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC--CChhhhhhhhHHhhHHHhh
Confidence 34689999999999988766555566788999997 9999999888876655543
No 148
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=31.51 E-value=72 Score=17.90 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 9 TWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 9 ~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
.-++.|...|.-..- +..+....+..||..++ -|..-|+.+.......++
T Consensus 10 ~L~~~er~il~l~~~-l~~~~~~s~~eIA~~l~--is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKG-LIDGREHTLEEVGAYFG--VTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHT-TTTSSCCCHHHHHHHHT--CCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHh-cccCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHHHH
Confidence 357777777743321 11112347999999997 999999998887776665
No 149
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=31.36 E-value=55 Score=20.24 Aligned_cols=29 Identities=24% Similarity=0.549 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 034427 32 RWQNIAKAVGGGKTVEEVKKHYEILVDDLNR 62 (95)
Q Consensus 32 rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ 62 (95)
+|+.=.+ ++ |.|.+|.++.|..+++.+..
T Consensus 55 Kw~AW~~-l~-gms~eeA~~~Yi~~v~~l~~ 83 (87)
T 2cb8_A 55 KWDAWNE-LK-GTSKEDAMKAYINKVEELKK 83 (87)
T ss_dssp HHHHHHT-TT-TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cC-CCCHHHHHHHHHHHHHHHHH
Confidence 3444332 46 89999999999999988763
No 150
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=31.14 E-value=41 Score=19.64 Aligned_cols=38 Identities=3% Similarity=0.018 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034427 16 KLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYE 54 (95)
Q Consensus 16 klle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~ 54 (95)
++|...+.+++......|+.||..-. |=|.-|+..--+
T Consensus 8 ~Il~~~l~~~~~~~~vdl~~la~~t~-G~SGADi~~l~~ 45 (83)
T 3aji_B 8 LIFSTITSKMNLSEEVDLEDYVARPD-KISGADINSICQ 45 (83)
T ss_dssp HHHHHHHTTSCBCTTCCTHHHHTSSC-CCCHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcccCHHHHHHHcC-CCCHHHHHHHHH
Confidence 46677777777554557999999999 999999876433
No 151
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=31.06 E-value=1e+02 Score=19.54 Aligned_cols=37 Identities=8% Similarity=0.055 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 17 LFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 17 lle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
.+..+|...+. -....||+.++ -|..-|.+|.+.|.+
T Consensus 9 ~il~~L~~~~~---~s~~ela~~lg--~s~~tv~~~l~~L~~ 45 (144)
T 2cfx_A 9 NIIEELKKDSR---LSMRELGRKIK--LSPPSVTERVRQLES 45 (144)
T ss_dssp HHHHHHHHCSC---CCHHHHHHHHT--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---CCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 44456666543 36899999998 999999999998854
No 152
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.72 E-value=94 Score=19.00 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 12 PKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 12 ~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
.++..+|+.+.++-+.-+...-.+||..++ -+.+-|+-=|.+.+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lg--L~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVG--LPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhC--CCHHHHHHHHhhccc
Confidence 456778999888888778889999999997 888888877777664
No 153
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=30.27 E-value=73 Score=17.60 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHhcC--CCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 10 WTPKENKLFEKALALYD--KETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 10 WT~eEdklle~aL~~~~--~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
=++.|...|. ..|. ......+..||..++ -|..-|+.+.......++
T Consensus 6 L~~~er~il~---l~~~l~~~~g~s~~eIA~~lg--is~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 6 LTAREAKVLR---MRFGIDMNTDYTLEEVGKQFD--VTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCHHHHHHHH---HHTTTTSSSCCCHHHHHHHHT--CCHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHH---HHHccCCCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHHHH
Confidence 4666776663 3341 012246999999997 999999998888777665
No 154
>2oy9_A UPF0223 protein BH2638; PFAM, structural genomics, PSI-2, protein structure initiative; 1.60A {Bacillus halodurans c-125} SCOP: a.276.1.1
Probab=30.17 E-value=1.1e+02 Score=19.79 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILV 57 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~ 57 (95)
..||.||.-.... -|+.|..+-..|-..+++..+|+...
T Consensus 11 ~dWSteEii~Vi~-----------F~~~VE~AYE~GV~r~~ll~~Y~~FK 49 (98)
T 2oy9_A 11 LDWSTEEVIDVVH-----------FFQAIEQAYDQGIAREDLLGKYRRFK 49 (98)
T ss_dssp CCCCHHHHHHHHH-----------HHHHHHHHHTTCEEHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-----------HHHHHHHHHHccCcHHHHHHHHHHHH
Confidence 4699999765422 25566666655666666666666543
No 155
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=29.79 E-value=56 Score=20.82 Aligned_cols=28 Identities=29% Similarity=0.582 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 32 RWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 32 rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
+|+.=.+ ++ |.|.+|.++.|..+++++.
T Consensus 64 Kw~AW~~-l~-gmS~eeAm~~YI~lv~~l~ 91 (96)
T 2lbb_A 64 KWEAWNA-LR-GMSTESAKEAYVKLLDTLA 91 (96)
T ss_dssp HHHHHHH-TT-TCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHh
Confidence 3444443 46 8999999999999998874
No 156
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=28.44 E-value=82 Score=17.56 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHH
Q 034427 13 KENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYE 54 (95)
Q Consensus 13 eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~ 54 (95)
-|...+..+|..+.. +..+.|..++ -|..-+.++-+
T Consensus 19 ~E~~~i~~aL~~~~g----n~~~aA~~LG--isr~tL~rklk 54 (63)
T 3e7l_A 19 FEKIFIEEKLREYDY----DLKRTAEEIG--IDLSNLYRKIK 54 (63)
T ss_dssp HHHHHHHHHHHHTTT----CHHHHHHHHT--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC----CHHHHHHHHC--cCHHHHHHHHH
Confidence 366788888888765 5889999997 66655554433
No 157
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=28.25 E-value=88 Score=17.87 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHH---HhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKAL---ALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNR 62 (95)
Q Consensus 7 ~~~WT~eEdklle~aL---~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ 62 (95)
....|.++...|+..+ ...|.-+...=..||..++ -|..+|.-=|++-....+.
T Consensus 5 R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~--L~~~qV~~WFqNrR~r~kk 61 (73)
T 1puf_B 5 RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCG--ITVSQVSNWFGNKRIRYKK 61 (73)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHC--cCHHHHHHHHHHHHhhccc
Confidence 4578999999999998 4444445566778999997 9999999888876655553
No 158
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=28.03 E-value=41 Score=20.71 Aligned_cols=28 Identities=36% Similarity=0.685 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 32 RWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 32 rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
+|+.=.+ ++ |.|.++.+++|..+++++.
T Consensus 54 Kw~AW~~-l~-gms~eeA~~~YI~~v~~l~ 81 (86)
T 1st7_A 54 KWEAWEN-LK-GKSQEDAEKEYIALVDQLI 81 (86)
T ss_dssp HHHHHHT-TT-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cC-CCCHHHHHHHHHHHHHHHh
Confidence 3444333 46 8999999999999998875
No 159
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=28.00 E-value=93 Score=18.05 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNR 62 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ 62 (95)
...+|.++...||.....-+.-+...=+.||..++ -|..+|.-=|++-....+.
T Consensus 17 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~vWFqNRR~k~kk 70 (77)
T 1puf_A 17 RCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLN--LTERQVKIWFQNRRMKMKK 70 (77)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHH
Confidence 44699999999999987755444455678999997 9999998777765444443
No 160
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=27.45 E-value=93 Score=17.86 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHh-cCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHh
Q 034427 6 LSSTWTPKENKLFEKALAL-YDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIE 64 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~-~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ie 64 (95)
....+|.++...||....+ -+.-+...=..||..++ -|..+|.-=|++-....++.+
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~--l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 5 TVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAG--LTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHhc
Confidence 5567999999999999874 33333445578999997 999999988887666665544
No 161
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=27.29 E-value=1.4e+02 Score=19.74 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
...+|.++...||.....-+.-+...=..||..++ -|..+|+-=|++-+.
T Consensus 91 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--L~~~qV~vWFqNRR~ 140 (146)
T 1au7_A 91 RTTISIAAKDALERHFGEHSKPSSQEIMRMAEELN--LEKEVVRVWFCNRRQ 140 (146)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHHH
T ss_pred CcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC--CChhhchhhhHhhhh
Confidence 44699999999999988866555666788999997 999999877776543
No 162
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=27.27 E-value=1.1e+02 Score=18.79 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDL 60 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV 60 (95)
...=|+.|...|.-.+. +. .-..||..++ -|..-|+.|...+...+
T Consensus 32 ~~~Lt~re~~Vl~l~~~--G~----s~~EIA~~L~--iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE--GF----LVTEIAKKLN--RSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHH--TC----CHHHHHHHHT--SCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc--CC----CHHHHHHHHC--cCHHHHHHHHHHHHHHH
Confidence 34578899988865432 22 3589999997 89999998888776554
No 163
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=27.23 E-value=1.2e+02 Score=19.02 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034427 11 TPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEIL 56 (95)
Q Consensus 11 T~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L 56 (95)
+.+|.++.++.+..|.. .|.....+|..++ -+.+.++.-.+.|
T Consensus 2 ~~~~~~l~~~i~~~~~~-~p~~~~~la~~~~--~~~~~~~~~l~~l 44 (121)
T 2pjp_A 2 SEEQQAIWQKAEPLFGD-EPWWVRDLAKETG--TDEQAMRLTLRQA 44 (121)
T ss_dssp CHHHHHHHHHHGGGCSS-SCEEHHHHHHHTT--CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-CCCCHHHHHHHhC--CCHHHHHHHHHHH
Confidence 56788888888888854 4557788999997 6677666544444
No 164
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=26.44 E-value=1.4e+02 Score=19.61 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDD 59 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~d 59 (95)
...+|.++...||.....-+.-+...=..||..++ -|..+|+-=|++-+..
T Consensus 97 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~--L~~~qV~vWFqNrR~k 147 (151)
T 3d1n_I 97 RTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELN--YDREVVRVWFSNRRQT 147 (151)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--SCHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHC--CCHHHhHHHHHHHHhc
Confidence 34689999999999988866555667789999997 9999998877765443
No 165
>1txl_A Metal-binding protein YODA; E.coli, structural genomics, NEW fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: b.60.1.4 PDB: 1s7d_A 1oej_A 1oee_A 1oek_A
Probab=26.38 E-value=19 Score=26.52 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=27.6
Q ss_pred ChHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHHh
Q 034427 30 PDRWQNIAKAVGGGKTVEEVKKHYEI-LVDDLNRIE 64 (95)
Q Consensus 30 ~~rW~kIA~~vpggRT~~qv~~ry~~-L~~dV~~ie 64 (95)
.+-|+..|+.-+ .+|++|++.-|.. ...||..|+
T Consensus 74 d~v~~~kAk~~~-~~TaeeyKayy~~gYkTDv~~I~ 108 (215)
T 1txl_A 74 DPVFQKKADADK-TKTFAEIKDYYHKGYATDIEMIG 108 (215)
T ss_dssp HHHHHHHHHHCT-TSCHHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHhhcC-CCCHHHHHHHHHhccCCCcceEE
Confidence 357899999866 8999999999997 667777654
No 166
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=26.33 E-value=1.1e+02 Score=18.51 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRI 63 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~i 63 (95)
...+|.++...||.....-+.-+...=..||..++ -|..+|+-=|++-....+..
T Consensus 21 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~--L~~~qV~vWFqNRR~k~kr~ 75 (93)
T 3a01_A 21 RTSFTRIQVAELEKRFHKQKYLASAERAALARGLK--MTDAQVKTWFQNRRTKWRRQ 75 (93)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTT--CCHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC--CChhhcccccHhhhhhhhhh
Confidence 34699999999999988755444555678899887 99999988887765555544
No 167
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.82 E-value=98 Score=17.56 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRI 63 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~i 63 (95)
...+|.++...||.....-+.-+...=..||..++ -|..+|+-=|++-....+..
T Consensus 13 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 13 RTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTD--LTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp SCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC--CCHHHHHHHhHHHHHHHHHH
Confidence 34689999999999987644333344568899997 99999998888876655543
No 168
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=25.75 E-value=65 Score=15.51 Aligned_cols=16 Identities=25% Similarity=0.613 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 034427 46 VEEVKKHYEILVDDLN 61 (95)
Q Consensus 46 ~~qv~~ry~~L~~dV~ 61 (95)
+++++.++..+.+.|.
T Consensus 7 ~e~ik~q~~~i~e~i~ 22 (26)
T 1oef_A 7 VEDMQRQWAGLVEKVQ 22 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5788899988888775
No 169
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=25.68 E-value=1e+02 Score=17.62 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHh---cCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALAL---YDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDL 60 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~---~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV 60 (95)
....+|.++...|+..+.. .|.-+...=+.||..++ -|..+|..=|++-....
T Consensus 10 ~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~--L~~~qV~~WFqNrR~r~ 65 (73)
T 1x2n_A 10 KRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTN--LTLLQVNNWFINARRRI 65 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT--CCHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHC--cCHHHHHHHhHHHHhhc
Confidence 3446999999999999965 33334456688999997 99999988877755443
No 170
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=25.34 E-value=1.1e+02 Score=18.20 Aligned_cols=47 Identities=21% Similarity=0.108 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNR 62 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ 62 (95)
...|..|...|.-.+. +. .-..||..++ .|..-|+.|...+...+..
T Consensus 26 ~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~--is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLLSE--GL----TNKQIADRMF--LAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHHHT--TC----CHHHHHHHHT--CCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHc--CC----CHHHHHHHHC--cCHHHHHHHHHHHHHHHcC
Confidence 3567788877765311 11 3689999997 8999999999888877763
No 171
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=24.92 E-value=1.1e+02 Score=17.90 Aligned_cols=45 Identities=24% Similarity=0.238 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 9 TWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 9 ~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
..|..|...|.-.+. +. .-..||..++ .|..-|+.|...+...+.
T Consensus 29 ~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~--is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 29 MLTEREMEILLLIAK--GY----SNQEIASASH--ITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHHHHHT--TC----CTTHHHHHHT--CCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHHC--cCHHHHHHHHHHHHHHHC
Confidence 467788888765321 11 3568999997 899999999888776654
No 172
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=24.82 E-value=1.2e+02 Score=18.09 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 6 LSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
....+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-....+
T Consensus 31 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~vWFqNRR~k~k 84 (88)
T 2r5y_A 31 QRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALS--LTERQIKIWFQNRRMKWK 84 (88)
T ss_dssp CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhC--cCHHHhhHHhHHHHHHhH
Confidence 344689999999999987654434455678999997 999999887777554443
No 173
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=24.39 E-value=1.2e+02 Score=18.01 Aligned_cols=49 Identities=12% Similarity=0.090 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALAL---YDKETPDRWQNIAKAVGGGKTVEEVKKHYEILV 57 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~---~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~ 57 (95)
...+|.++...|+..+.. .+.-+...=..||..++ -|..+|.-=|++-+
T Consensus 31 r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~g--L~~~qV~~WFqNrR 82 (87)
T 1mnm_C 31 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTS--LSRIQIKNWVSNRR 82 (87)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 457999999999999988 55545555678999997 99999988777644
No 174
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=24.23 E-value=1.1e+02 Score=17.48 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHh-cCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHh
Q 034427 6 LSSTWTPKENKLFEKALAL-YDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIE 64 (95)
Q Consensus 6 ~~~~WT~eEdklle~aL~~-~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ie 64 (95)
....+|.++...||..... -+.-+...=..||..++ -|..+|.-=|++-....++.+
T Consensus 4 ~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~--l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 4 GAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAG--LTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHC--cCHHHhhHHhHHHHHHHhhhc
Confidence 4567999999999999875 33333445678999997 999999888887666555444
No 175
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=24.19 E-value=1.1e+02 Score=17.40 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHh
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIE 64 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ie 64 (95)
...+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-....+..+
T Consensus 6 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 6 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALS--LTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp TCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHT--CCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHC--cCHhhhhHHhHHHHhHHhHhc
Confidence 45789999999999987755444455678999997 999999888877665555433
No 176
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=24.19 E-value=1.4e+02 Score=18.88 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 11 TPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 11 T~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
+.-+.++| .+|...+. -....||+.++ -|..-|.+|.+.|.+
T Consensus 6 d~~~~~iL-~~L~~~~~---~s~~ela~~lg--~s~~tv~~~l~~L~~ 47 (150)
T 2w25_A 6 DDIDRILV-RELAADGR---ATLSELATRAG--LSVSAVQSRVRRLES 47 (150)
T ss_dssp CHHHHHHH-HHHHHCTT---CCHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHcCC---CCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 44455555 45665433 46899999997 999999999998864
No 177
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=24.16 E-value=94 Score=20.60 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=21.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 32 RWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 32 rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
+|+.-. .++ |.|.+++++.|..+++.|.
T Consensus 81 Kw~AW~-~l~-gmS~eeAm~~YI~~v~~l~ 108 (119)
T 3flv_A 81 KWDAWS-SLG-DMTKEEAMIAYVEEMKKII 108 (119)
T ss_dssp HHHHHH-HTT-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-Hcc-CCCHHHHHHHHHHHHHHHH
Confidence 344333 356 8999999999999988775
No 178
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=23.83 E-value=1.2e+02 Score=18.11 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
...-|..|...|.-... +. .-..||..++ -|..-|+.|...+...+.
T Consensus 27 ~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~--iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 27 QDVLTPRECLILQEVEK--GF----TNQEIADALH--LSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp --CCCHHHHHHHHHHHT--TC----CHHHHHHHHT--CCHHHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHc--CC----CHHHHHHHHC--cCHHHHHHHHHHHHHHHC
Confidence 34578888888865442 22 4689999997 999999999998876654
No 179
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=23.74 E-value=1.2e+02 Score=17.74 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=24.1
Q ss_pred hHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 31 DRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 31 ~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
-.+..||..++ .|..-|+.+.......++
T Consensus 39 ~s~~EIA~~lg--is~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 39 KTLEEVGQYFN--VTRERIRQIEVKALRKLR 67 (87)
T ss_dssp CCHHHHHHHHT--CCHHHHHHHHHHHHHHHB
T ss_pred CCHHHHHHHHC--CCHHHHHHHHHHHHHHHH
Confidence 46999999997 999999988877666665
No 180
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=23.03 E-value=1.1e+02 Score=17.24 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHh
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIE 64 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ie 64 (95)
...+|.++...||.....-+.-+...=..||..++ -|..+|.-=|++-....+..+
T Consensus 6 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~--l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 6 RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIH--LTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHTT
T ss_pred CCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC--CCHHHhHHHhHHHhhhhhhhh
Confidence 45689999999999987755444455678999997 999999988887665555443
No 181
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=22.70 E-value=1.4e+02 Score=18.15 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
....|.++...||.....-+.-+...=..||..++ -|..+|+-=|++-+...+
T Consensus 29 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~--L~~~qV~vWFqNRR~k~k 81 (96)
T 3nar_A 29 ICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESG--LARTDIVSWFGDTRYAWK 81 (96)
T ss_dssp SSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHT
T ss_pred CccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC--CCHHHeeecchhhhhHhh
Confidence 34699999999999987644333344568999997 999999887777654443
No 182
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=22.33 E-value=1.1e+02 Score=19.76 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 034427 32 RWQNIAKAVGGGKTVEEVKKHYEILVDDLNR 62 (95)
Q Consensus 32 rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ 62 (95)
+|+.-.+ ++ |.|.++.++.|..+++.+..
T Consensus 65 Kw~AW~~-l~-gms~eeA~~~YI~~v~~l~~ 93 (106)
T 2wh5_A 65 KWDAWNS-LG-KMSREEAMSAYITEMKLVAQ 93 (106)
T ss_dssp HHHHHHT-TT-TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHHH
Confidence 4655443 46 89999999999998887764
No 183
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=22.05 E-value=1.4e+02 Score=17.88 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHH
Q 034427 14 ENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEI 55 (95)
Q Consensus 14 Edklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~ 55 (95)
|...++.+|..+.. +..+.|+.++ -|..-+.++-+.
T Consensus 52 E~~~i~~aL~~~~g----n~~~aA~~LG--Isr~tL~rklkk 87 (91)
T 1ntc_A 52 ERTLLTTALRHTQG----HKQEAARLLG--WGAATLTAKLKE 87 (91)
T ss_dssp HHHHHHHHHHHTTT----CTTHHHHHTT--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC----CHHHHHHHHC--cCHHHHHHHHHH
Confidence 56677778888754 3567888887 776666555443
No 184
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=21.64 E-value=1e+02 Score=16.29 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=22.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 33 WQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 33 W~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
-..||..++ -|..-|+.|...+...+.
T Consensus 16 ~~eIA~~l~--is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 16 NHGISEKLH--ISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp SHHHHHHTC--SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhC--CCHHHHHHHHHHHHHHHC
Confidence 479999997 999999999888776654
No 185
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.54 E-value=86 Score=20.59 Aligned_cols=28 Identities=25% Similarity=0.532 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 034427 32 RWQNIAKAVGGGKTVEEVKKHYEILVDDLN 61 (95)
Q Consensus 32 rW~kIA~~vpggRT~~qv~~ry~~L~~dV~ 61 (95)
+|+.-.+ +. |.|.++.+..|..|++.+.
T Consensus 69 Kw~AW~~-l~-gms~eeAm~~YI~lv~~l~ 96 (116)
T 2cqu_A 69 KWDAWNA-LG-SLPKEAARQNYVDLVSSLS 96 (116)
T ss_dssp HHHHHHH-HC-SCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHc
Confidence 3444333 36 8999999999999999885
No 186
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=21.40 E-value=1.2e+02 Score=18.08 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=22.4
Q ss_pred HHHHH-HHHHHHHhcCCCCChHHHHHHHHcC
Q 034427 12 PKENK-LFEKALALYDKETPDRWQNIAKAVG 41 (95)
Q Consensus 12 ~eEdk-lle~aL~~~~~~~~~rW~kIA~~vp 41 (95)
.+|-+ +|..+|..+.-...-.|+++...+-
T Consensus 14 ~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~ 44 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSNASWEQAMKMII 44 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCCCCHHHHHHHHc
Confidence 44443 8999999987666678999987654
No 187
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=21.03 E-value=1.1e+02 Score=16.33 Aligned_cols=49 Identities=10% Similarity=0.067 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 034427 7 SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILV 57 (95)
Q Consensus 7 ~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~ 57 (95)
....|.++...||.....-+.-+...=..||..++ -|..+|+-=|++-.
T Consensus 6 Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNrR 54 (58)
T 3rkq_A 6 RVLFSQAQVYELERRFKQQRYLSAPERDQLASVLK--LTSTQVKIWFQNRR 54 (58)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHT--CCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC--cCHHHHHHhhHHhh
Confidence 45689999999999977644333344567899997 89999987776543
No 188
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=20.48 E-value=1.3e+02 Score=18.47 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 034427 18 FEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58 (95)
Q Consensus 18 le~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~ 58 (95)
+...|...+ -.=..||..++ -|...|++|-..|.+
T Consensus 22 IL~lL~~~g----~sa~eLAk~Lg--iSk~aVr~~L~~Le~ 56 (82)
T 1oyi_A 22 AIKTIGIEG----ATAAQLTRQLN--MEKREVNKALYDLQR 56 (82)
T ss_dssp HHHHHSSST----EEHHHHHHHSS--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC----CCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 334555433 46789999997 999999999998854
No 189
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=20.22 E-value=1.5e+02 Score=17.51 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHh---cCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Q 034427 8 STWTPKENKLFEKALAL---YDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNR 62 (95)
Q Consensus 8 ~~WT~eEdklle~aL~~---~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~ 62 (95)
..+|.++...|+..+.. .+.-+...=..+|..++ -|..||.-=|++-....+.
T Consensus 7 ~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~g--Lt~~qV~~WFqNrR~r~kk 62 (83)
T 1le8_B 7 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTS--LSRIQIKNWVAARRAKEKT 62 (83)
T ss_dssp CCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHC--CCHHHcccccHHHHccccc
Confidence 45899999999999988 55444455578999997 9999999888876655543
Done!