BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034429
(95 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1
Dna Binding Domain From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr3023c
Length = 125
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
FL K + +V D TD ++ WS + NSF V++ +FA+ +LP YFKHNN +SF+RQLN Y
Sbjct: 20 FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMY 78
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of
Drosophila Heat Shock Transcription Factor
pdb|1HKT|A Chain A, Solution Structure Of The Dna-Binding Domain Of
Drosophila Heat Shock Transcription Factor
Length = 106
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 42/59 (71%)
Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
FL K + +VDD+ T+ ++ W+ + SFV+ N +FA+ LLP +KHNN +SFIRQLN Y
Sbjct: 7 FLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMY 65
>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX
Length = 102
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY- 78
F+ K + MV+D S ++ + WS + S VV N F + +LP YFKH+NF+SF+RQLN Y
Sbjct: 15 FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYG 74
Query: 79 ---VQIIINKSFLWNHD 92
VQ + + S L N+D
Sbjct: 75 WHKVQDVKSGSMLSNND 91
>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Tail-To-Tail Orientation
pdb|1FYM|B Chain B, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Tail-To-Tail Orientation
pdb|2HTS|A Chain A, Crystal Structure Of The Dna Binding Domain Of The Heat
Shock Transcription Factor
pdb|3HSF|A Chain A, Heat Shock Transcription Factor (Hsf)
Length = 92
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY- 78
F+ K + MV+D S ++ + WS + S VV N F + +LP YFKH+NF+SF+RQLN Y
Sbjct: 5 FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYG 64
Query: 79 ---VQIIINKSFLWNHD 92
VQ + + S L N+D
Sbjct: 65 WHKVQDVKSGSMLSNND 81
>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
pdb|1FBU|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Length = 90
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY- 78
F+ K + MV+D S ++ + WS + S VV N F + +LP YFKH+NF+SF+RQLN Y
Sbjct: 3 FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYG 62
Query: 79 ---VQIIINKSFLWNHD 92
VQ + + S L N+D
Sbjct: 63 WHKVQDVKSGSMLSNND 79
>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna That Is Translationally Disordered
pdb|1FYL|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Head-To-Head Orientation
pdb|1FYL|B Chain B, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Head-To-Head Orientation
Length = 92
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY- 78
F+ K + V+D S ++ + WS + S VV N F + +LP YFKH+NF+SF+RQLN Y
Sbjct: 5 FVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNXYG 64
Query: 79 ---VQIIINKSFLWNHD 92
VQ + + S L N+D
Sbjct: 65 WHKVQDVKSGSXLSNND 81
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
pdb|1FBS|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
Length = 90
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY- 78
F+ K + MV+D S ++ + WS + S VV N F + +L YFKH+NF+SF+RQLN Y
Sbjct: 3 FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNMYG 62
Query: 79 ---VQIIINKSFLWNHD 92
VQ + + S L N+D
Sbjct: 63 WHKVQDVKSGSMLSNND 79
>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
pdb|1FBQ|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
Length = 90
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY- 78
F+ K + MV+D S ++ + WS + S VV N F + +L YFKH+NF+SF+RQLN Y
Sbjct: 3 FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNMYG 62
Query: 79 ---VQIIINKSFLWNHD 92
VQ + + S L N+D
Sbjct: 63 WHKVQDVKSGSMLSNND 79
>pdb|2Z8Z|A Chain A, Crystal Structure Of A Platinum-Bound S445c Mutant Of
Pseudomonas Sp. Mis38 Lipase
Length = 617
Score = 32.0 bits (71), Expect = 0.080, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 22 IKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKH 65
+ +D +S+TD IVS++D+ S WN F+ L +PT+ H
Sbjct: 271 VGVHDAPKESATDNIVSFNDHYAS-TAWNLLPFSILNIPTWISH 313
>pdb|2ZJ7|A Chain A, Crystal Structure Of D157a Mutant Of Pseudomonas Sp. Mis38
Lipase
Length = 617
Score = 32.0 bits (71), Expect = 0.081, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 22 IKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKH 65
+ +D +S+TD IVS++D+ S WN F+ L +PT+ H
Sbjct: 271 VGVHDAPKESATDNIVSFNDHYAS-TAWNLLPFSILNIPTWISH 313
>pdb|2ZJ6|A Chain A, Crystal Structure Of D337a Mutant Of Pseudomonas Sp. Mis38
Lipase
Length = 617
Score = 32.0 bits (71), Expect = 0.081, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 22 IKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKH 65
+ +D +S+TD IVS++D+ S WN F+ L +PT+ H
Sbjct: 271 VGVHDAPKESATDNIVSFNDHYAS-TAWNLLPFSILNIPTWISH 313
>pdb|2Z8X|A Chain A, Crystal Structure Of Extracellular Lipase From Pseudomonas
Sp. Mis38
pdb|2ZVD|A Chain A, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase In An
Open Conformation
pdb|2ZVD|C Chain C, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase In An
Open Conformation
pdb|3A6Z|A Chain A, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase (Pml) In
The Open Conformation Following Dialysis Against Ca-Free
Buffer
pdb|3A6Z|C Chain C, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase (Pml) In
The Open Conformation Following Dialysis Against Ca-Free
Buffer
pdb|3A70|A Chain A, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase In
Complex Diethyl Phosphate
pdb|3A70|C Chain C, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase In
Complex Diethyl Phosphate
Length = 617
Score = 32.0 bits (71), Expect = 0.086, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 22 IKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKH 65
+ +D +S+TD IVS++D+ S WN F+ L +PT+ H
Sbjct: 271 VGVHDAPKESATDNIVSFNDHYAS-TAWNLLPFSILNIPTWISH 313
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B
Length = 853
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFV------------VWNPPEFARLLLPTYFKHNN 67
L K Y +V+D+ +I+S N ++ V V +P +LL P Y N
Sbjct: 494 LLAKAYVVVNDACYHQIISHWLNTHAVVEPFVIATNRHLSVVHP--IYKLLFPHYRDTMN 551
Query: 68 FSSFIRQLNTYVQIIINKSFLWNH 91
+S R+ II K+FLW
Sbjct: 552 INSLARKSLVNADGIIEKTFLWGR 575
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 26 DMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFK 64
D++D D W +++++F VW+ P + +P Y +
Sbjct: 610 DVIDRHYPDMTDKWMNSESAFSVWDSPPLTKNPIPLYLR 648
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,472,933
Number of Sequences: 62578
Number of extensions: 82675
Number of successful extensions: 193
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 14
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)