Query 034429
Match_columns 95
No_of_seqs 122 out of 864
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 03:49:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hts_B Heat shock transcriptio 100.0 2.4E-37 8.1E-42 203.9 2.8 86 9-94 4-99 (102)
2 1hks_A Heat-shock transcriptio 100.0 2.5E-36 8.6E-41 199.4 3.3 80 15-94 2-90 (106)
3 2ldu_A Heat shock factor prote 100.0 2.9E-35 9.8E-40 199.6 5.6 83 12-94 12-104 (125)
4 4avp_A ETS translocation varia 96.7 0.0013 4.3E-08 43.1 3.3 79 13-91 7-91 (106)
5 1wwx_A E74-like factor 5 ESE-2 96.7 0.0027 9.3E-08 41.6 4.8 68 12-79 3-73 (107)
6 2dao_A Transcription factor ET 96.7 0.0018 6.2E-08 43.1 3.9 67 12-78 3-71 (118)
7 1fli_A FLI-1; transcription/DN 96.6 0.0012 4.2E-08 42.6 2.9 63 17-79 5-68 (98)
8 2ypr_A Protein FEV; transcript 96.5 0.002 6.9E-08 41.8 3.3 76 16-91 6-87 (102)
9 1bc8_C SAP-1, protein (SAP-1 E 96.4 0.002 6.7E-08 41.3 2.8 63 17-79 4-67 (93)
10 1awc_A Protein (GA binding pro 96.4 0.0017 5.8E-08 42.8 2.6 59 22-80 5-64 (110)
11 1gvj_A C-ETS-1 protein, P54; t 96.2 0.0034 1.2E-07 43.1 3.0 68 14-81 36-104 (146)
12 2nny_A C-ETS-1 protein, P54; p 96.1 0.004 1.4E-07 43.7 3.4 68 14-81 61-129 (171)
13 1yo5_C SAM pointed domain cont 96.0 0.0038 1.3E-07 40.2 2.5 68 14-81 7-77 (97)
14 3jtg_A ETS-related transcripti 95.8 0.0079 2.7E-07 39.1 3.3 60 19-78 6-68 (103)
15 1hbx_G ETS-domain protein ELK- 95.2 0.0087 3E-07 41.5 2.0 63 17-79 5-68 (157)
16 1pue_E Protein (transcription 94.6 0.024 8.1E-07 35.9 2.9 59 21-79 5-68 (89)
17 2lf8_A Transcription factor ET 92.3 0.016 5.5E-07 39.0 0.0 63 19-81 6-70 (128)
18 1whv_A Poly(A)-specific ribonu 73.1 1.3 4.5E-05 28.4 1.3 52 24-76 32-88 (100)
19 3ctr_A Poly(A)-specific ribonu 65.9 3.4 0.00012 26.5 2.1 43 34-76 31-78 (101)
20 3cue_D Transport protein parti 59.4 4 0.00014 28.6 1.7 61 19-80 88-157 (193)
21 1sz7_A BET3 homolog, trafficki 56.9 6.9 0.00024 27.6 2.5 62 19-81 85-154 (200)
22 2gjh_A Designed protein; oblig 24.5 68 0.0023 18.1 2.7 29 18-48 17-46 (62)
23 4ggc_A P55CDC, cell division c 23.8 34 0.0012 22.6 1.6 27 26-52 15-53 (318)
24 1wqa_A Phospho-sugar mutase; a 22.3 61 0.0021 24.7 2.9 36 17-52 220-255 (455)
No 1
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=100.00 E-value=2.4e-37 Score=203.92 Aligned_cols=86 Identities=35% Similarity=0.595 Sum_probs=75.4
Q ss_pred CCCCCCCCCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhcccccCCcCchhhhhccccCCceEecc---
Q 034429 9 GPGGLGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINK--- 85 (95)
Q Consensus 9 ~~~~~~~~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~~F~~~~~~SF~RqLn~YGF~kv~~--- 85 (95)
-++.+...+++|+.|||+||+||++++||+|+++|++|+|+|+++|+++|||+||+|++|+||+||||+|||+|+.+
T Consensus 4 ~~s~~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~ 83 (102)
T 3hts_B 4 RASVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKS 83 (102)
T ss_dssp ------CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC----
T ss_pred ccCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeecccc
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999982
Q ss_pred -------CCCCccCCC
Q 034429 86 -------SFLWNHDNA 94 (95)
Q Consensus 86 -------~~~~~~~~~ 94 (95)
+..|||.|.
T Consensus 84 g~~~~~~~~~wEF~n~ 99 (102)
T 3hts_B 84 GSMLSNNDSRWEFENE 99 (102)
T ss_dssp -----CCSCCEEEEEC
T ss_pred CcccCCCcCCeEecCC
Confidence 357999874
No 2
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=100.00 E-value=2.5e-36 Score=199.42 Aligned_cols=80 Identities=39% Similarity=0.654 Sum_probs=74.8
Q ss_pred CCCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhcccccCCcCchhhhhccccCCceEecc---------
Q 034429 15 GGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINK--------- 85 (95)
Q Consensus 15 ~~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~~F~~~~~~SF~RqLn~YGF~kv~~--------- 85 (95)
.++++|+.|||+||+||++++||+|+++|++|+|+|+++|+++|||+||+|+||+||+||||+|||+|+..
T Consensus 2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~ 81 (106)
T 1hks_A 2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD 81 (106)
T ss_dssp TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCccCCC
Q 034429 86 SFLWNHDNA 94 (95)
Q Consensus 86 ~~~~~~~~~ 94 (95)
...|||.|.
T Consensus 82 ~~~~ef~h~ 90 (106)
T 1hks_A 82 RDEIEFSHP 90 (106)
T ss_dssp TSTTEECCT
T ss_pred CCceEEECc
Confidence 246898885
No 3
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=199.64 Aligned_cols=83 Identities=36% Similarity=0.585 Sum_probs=76.7
Q ss_pred CCCCCCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhcccccCCcCchhhhhccccCCceEecc------
Q 034429 12 GLGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINK------ 85 (95)
Q Consensus 12 ~~~~~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~~F~~~~~~SF~RqLn~YGF~kv~~------ 85 (95)
......++|+.|||+||+||++++||+|+++|++|+|+|+++|+++|||+||+|+||+||+||||+|||+|+..
T Consensus 12 ~~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~ 91 (125)
T 2ldu_A 12 AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGL 91 (125)
T ss_dssp CSSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSS
T ss_pred ccCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeecccccc
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred ----CCCCccCCC
Q 034429 86 ----SFLWNHDNA 94 (95)
Q Consensus 86 ----~~~~~~~~~ 94 (95)
...|||.|.
T Consensus 92 ~~~~~~~~eF~H~ 104 (125)
T 2ldu_A 92 VKPERDDTEFQHP 104 (125)
T ss_dssp SSCSSCCEEEECT
T ss_pred ccCCCCccEEECc
Confidence 246888885
No 4
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=96.70 E-value=0.0013 Score=43.09 Aligned_cols=79 Identities=18% Similarity=0.283 Sum_probs=55.2
Q ss_pred CCCCCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccC---Cc-eEeccC-
Q 034429 13 LGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTY---VQ-IIINKS- 86 (95)
Q Consensus 13 ~~~~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~Y---GF-~kv~~~- 86 (95)
.+.+.....+=|.++|+|+++.++|+|.+.+..|.+.|+++.++.=-.+ -=..-+|..+.|-|.+| |. +||...
T Consensus 7 ~~~g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r 86 (106)
T 4avp_A 7 QRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGER 86 (106)
T ss_dssp ----CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCS
T ss_pred CCCCcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCe
Confidence 4455567778888999999999999999988899999998887642221 11456889999999887 43 355443
Q ss_pred CCCcc
Q 034429 87 FLWNH 91 (95)
Q Consensus 87 ~~~~~ 91 (95)
.++.|
T Consensus 87 ~vYkF 91 (106)
T 4avp_A 87 YVYKF 91 (106)
T ss_dssp SEEEE
T ss_pred EEEEe
Confidence 24554
No 5
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=96.68 E-value=0.0027 Score=41.59 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=49.9
Q ss_pred CCCCCCCcHHHHHHHhccCCC-CCceeEEec-CCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCC
Q 034429 12 GLGGGPAPFLIKTYDMVDDSS-TDEIVSWSD-NKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYV 79 (95)
Q Consensus 12 ~~~~~~~~F~~kL~~ml~~~~-~~~iI~W~~-~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YG 79 (95)
+++++.....+=|.++|.||+ +.++|+|.. +...|.+.|+++.++.=-.+ -=..-+|..+-|-|.+|-
T Consensus 3 sg~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY 73 (107)
T 1wwx_A 3 SGSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYY 73 (107)
T ss_dssp CCCCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CCCCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence 345667778888999999885 568999987 46789999998887742221 113468888888888773
No 6
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.66 E-value=0.0018 Score=43.08 Aligned_cols=67 Identities=21% Similarity=0.374 Sum_probs=51.0
Q ss_pred CCCCCCCcHHHHHHHhccCCCCCceeEEec-CCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccC
Q 034429 12 GLGGGPAPFLIKTYDMVDDSSTDEIVSWSD-NKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTY 78 (95)
Q Consensus 12 ~~~~~~~~F~~kL~~ml~~~~~~~iI~W~~-~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~Y 78 (95)
++..+....-+=|.++|+|+.+.++|+|.. ++..|.+.|+++.++.=-.+ -=..-+|..+-|-|.+|
T Consensus 3 ~~~~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyY 71 (118)
T 2dao_A 3 SGSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHY 71 (118)
T ss_dssp CCCCCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CccCcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHH
Confidence 344556777888999999999999999987 55689999998877642222 11336888888999887
No 7
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=96.64 E-value=0.0012 Score=42.63 Aligned_cols=63 Identities=19% Similarity=0.327 Sum_probs=47.4
Q ss_pred CCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCC
Q 034429 17 PAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYV 79 (95)
Q Consensus 17 ~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YG 79 (95)
....-+=|.++|+|+++.++|+|..++..|.+.|+++.++.=-.+ -=..-+|..+-|-|.+|-
T Consensus 5 ~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY 68 (98)
T 1fli_A 5 QIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY 68 (98)
T ss_dssp SCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred ceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence 345566677888999999999999988899999998888742221 113467888888888764
No 8
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=96.50 E-value=0.002 Score=41.83 Aligned_cols=76 Identities=16% Similarity=0.305 Sum_probs=54.0
Q ss_pred CCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCC---c-eEeccC-CCC
Q 034429 16 GPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYV---Q-IIINKS-FLW 89 (95)
Q Consensus 16 ~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YG---F-~kv~~~-~~~ 89 (95)
+.....+=|.++|+|+++.++|+|+..+..|.+.|+++.++.=-.+ -=..-+|..+.|-|.+|- . +||... .++
T Consensus 6 g~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vY 85 (102)
T 2ypr_A 6 GQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAY 85 (102)
T ss_dssp SSCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEE
T ss_pred CcEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEE
Confidence 3455677788999999999999999888999999998887642211 114568899999988873 3 355533 344
Q ss_pred cc
Q 034429 90 NH 91 (95)
Q Consensus 90 ~~ 91 (95)
.|
T Consensus 86 kF 87 (102)
T 2ypr_A 86 RF 87 (102)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 9
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=96.44 E-value=0.002 Score=41.29 Aligned_cols=63 Identities=17% Similarity=0.324 Sum_probs=48.6
Q ss_pred CCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCC
Q 034429 17 PAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYV 79 (95)
Q Consensus 17 ~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YG 79 (95)
....-+=|.++|+|+++.++|+|...+..|.+.|+++.++.=-.+ -=..-+|....|-|.+|-
T Consensus 4 ~i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY 67 (93)
T 1bc8_C 4 AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYY 67 (93)
T ss_dssp CCCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence 455667788999999999999999877799999998887742221 114468888999988873
No 10
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=96.43 E-value=0.0017 Score=42.77 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=45.6
Q ss_pred HHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCCc
Q 034429 22 IKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYVQ 80 (95)
Q Consensus 22 ~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YGF 80 (95)
+=|.++|+|+++.++|+|...+..|.+.|+++.++.=-.+ -=..-+|....|-|.+|-=
T Consensus 5 qFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~ 64 (110)
T 1awc_A 5 QFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYD 64 (110)
T ss_dssp HHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGG
T ss_pred HHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHh
Confidence 4578899999999999999988899999998887643322 1133578889999988743
No 11
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=96.16 E-value=0.0034 Score=43.15 Aligned_cols=68 Identities=24% Similarity=0.390 Sum_probs=52.9
Q ss_pred CCCCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCCce
Q 034429 14 GGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYVQI 81 (95)
Q Consensus 14 ~~~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YGF~ 81 (95)
+++....-+=|.++|+|+...++|+|...+..|.+.|+++.++.=-.+ -=..-+|..+.|-|.+|-=+
T Consensus 36 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k 104 (146)
T 1gvj_A 36 GSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDK 104 (146)
T ss_dssp TCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHT
T ss_pred CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Confidence 446778888899999999999999999999999999999888743222 11335788888999887433
No 12
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=96.14 E-value=0.004 Score=43.75 Aligned_cols=68 Identities=24% Similarity=0.400 Sum_probs=53.0
Q ss_pred CCCCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCCce
Q 034429 14 GGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYVQI 81 (95)
Q Consensus 14 ~~~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YGF~ 81 (95)
+++.....+=|.++|+|+...++|+|...+..|.+.|+++.++.=-.+ -=..-+|..+-|-|.+|-=+
T Consensus 61 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k 129 (171)
T 2nny_A 61 GSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDK 129 (171)
T ss_dssp TCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTT
T ss_pred CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Confidence 446677888899999999999999999999999999999888743222 11335788888999887544
No 13
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=95.99 E-value=0.0038 Score=40.19 Aligned_cols=68 Identities=16% Similarity=0.274 Sum_probs=49.7
Q ss_pred CCCCCcHHHHHHHhccCCC-CCceeEEec-CCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCCce
Q 034429 14 GGGPAPFLIKTYDMVDDSS-TDEIVSWSD-NKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYVQI 81 (95)
Q Consensus 14 ~~~~~~F~~kL~~ml~~~~-~~~iI~W~~-~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YGF~ 81 (95)
+++....-+=|.++|+||+ +.++|+|.+ +...|.+.|+++.++.=-.+ -=..-+|..+.|-|.+|-=+
T Consensus 7 ~~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~ 77 (97)
T 1yo5_C 7 GSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKK 77 (97)
T ss_dssp --CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTT
T ss_pred CCCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhc
Confidence 3356677888899999985 589999985 57789999998887742221 11346889999999888643
No 14
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=95.78 E-value=0.0079 Score=39.06 Aligned_cols=60 Identities=12% Similarity=0.244 Sum_probs=43.8
Q ss_pred cHHHHHHHhccCCC-CCceeEEecC-CCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccC
Q 034429 19 PFLIKTYDMVDDSS-TDEIVSWSDN-KNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTY 78 (95)
Q Consensus 19 ~F~~kL~~ml~~~~-~~~iI~W~~~-G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~Y 78 (95)
...+=|.++|.|++ +.++|+|.+. ...|.+.|+++.++.=-.+ -=..-+|..+.|-|.+|
T Consensus 6 ~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyY 68 (103)
T 3jtg_A 6 HLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYY 68 (103)
T ss_dssp SHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHH
Confidence 45566778899987 6789999984 4589999998887642111 11456888999888877
No 15
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=95.18 E-value=0.0087 Score=41.53 Aligned_cols=63 Identities=17% Similarity=0.324 Sum_probs=48.3
Q ss_pred CCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCC
Q 034429 17 PAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYV 79 (95)
Q Consensus 17 ~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YG 79 (95)
.....+=|.++|.|+++.++|+|...+..|.+.|+++.++.=-.+ -=..-+|..+-|-|.+|-
T Consensus 5 ~i~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY 68 (157)
T 1hbx_G 5 AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYY 68 (157)
T ss_dssp CCCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence 445667788999999999999999877899999998888753221 113467888888888763
No 16
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=94.64 E-value=0.024 Score=35.88 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=42.3
Q ss_pred HHHHHHhccCCCCCceeEEecCC-CeEEEe--CchhhHHhhcccc--cCCcCchhhhhccccCC
Q 034429 21 LIKTYDMVDDSSTDEIVSWSDNK-NSFVVW--NPPEFARLLLPTY--FKHNNFSSFIRQLNTYV 79 (95)
Q Consensus 21 ~~kL~~ml~~~~~~~iI~W~~~G-~sfiI~--d~~~f~~~vLp~~--F~~~~~~SF~RqLn~YG 79 (95)
-+=|.++|+|+++.++|+|.+.+ ..|.+. |+++.++.=-.+= =..-+|..+.|-|.+|-
T Consensus 5 wqFL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY 68 (89)
T 1pue_E 5 YQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYG 68 (89)
T ss_dssp HHHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHH
Confidence 45578899999999999998744 567764 6777776422221 12568999999998873
No 17
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=92.30 E-value=0.016 Score=38.97 Aligned_cols=63 Identities=21% Similarity=0.415 Sum_probs=43.4
Q ss_pred cHHHHHHHhccCCCCCceeEEecC-CCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCCce
Q 034429 19 PFLIKTYDMVDDSSTDEIVSWSDN-KNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYVQI 81 (95)
Q Consensus 19 ~F~~kL~~ml~~~~~~~iI~W~~~-G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YGF~ 81 (95)
..-+=|.++|+|+++.++|+|... +..|.+.|+++.++.=-.+ -=..-+|..+-|-|.+|-=+
T Consensus 6 ~LWqFLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyYY~k 70 (128)
T 2lf8_A 6 LLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKL 70 (128)
Confidence 344557788999999999999874 4589999998766532221 11225677788888777543
No 18
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=73.14 E-value=1.3 Score=28.39 Aligned_cols=52 Identities=17% Similarity=0.486 Sum_probs=38.3
Q ss_pred HHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-----ccCCcCchhhhhccc
Q 034429 24 TYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-----YFKHNNFSSFIRQLN 76 (95)
Q Consensus 24 L~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-----~F~~~~~~SF~RqLn 76 (95)
|.++..+=. .=.|+|-+|..+|++.....-++++|.. -|+-..|..+...|+
T Consensus 32 I~~lFs~fg-gv~I~WidDTsAlvvf~~~~~a~~al~~i~k~~~y~i~ty~e~~~~l~ 88 (100)
T 1whv_A 32 LYQLFSAFG-NIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVGKKQ 88 (100)
T ss_dssp HHHHHTTTC-SCCCEEEETTEEEEECSCHHHHHHHHHHHHHCCSSEEEEHHHHHHHHC
T ss_pred HHHHhhccC-CEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEEhHHhHHHHh
Confidence 444444422 5689999999999999888888887763 267777877776664
No 19
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=65.95 E-value=3.4 Score=26.50 Aligned_cols=43 Identities=19% Similarity=0.529 Sum_probs=32.4
Q ss_pred CceeEEecCCCeEEEeCchhhHHhhccc-----ccCCcCchhhhhccc
Q 034429 34 DEIVSWSDNKNSFVVWNPPEFARLLLPT-----YFKHNNFSSFIRQLN 76 (95)
Q Consensus 34 ~~iI~W~~~G~sfiI~d~~~f~~~vLp~-----~F~~~~~~SF~RqLn 76 (95)
.=.|+|-+|..+|++.....-.+++|.. -|+-..|..+...|.
T Consensus 31 gv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y~i~ty~e~~~~l~ 78 (101)
T 3ctr_A 31 NIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQTYAEYMGRKQ 78 (101)
T ss_dssp EEEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSCCCCCHHHHHC---
T ss_pred CEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEEhHHhHHHHh
Confidence 4679999999999998877778777763 377788888877663
No 20
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=59.42 E-value=4 Score=28.61 Aligned_cols=61 Identities=23% Similarity=0.372 Sum_probs=44.0
Q ss_pred cHH-HHHHHhccCCCCCceeEEecCCCeEEE-eCchhhHHhh-ccccc-CCcCchhhh-----hccccCCc
Q 034429 19 PFL-IKTYDMVDDSSTDEIVSWSDNKNSFVV-WNPPEFARLL-LPTYF-KHNNFSSFI-----RQLNTYVQ 80 (95)
Q Consensus 19 ~F~-~kL~~ml~~~~~~~iI~W~~~G~sfiI-~d~~~f~~~v-Lp~~F-~~~~~~SF~-----RqLn~YGF 80 (95)
.|+ +.+|.++=.. ..+...|+++++.++| .|..-+..-| +|.-. ..-+|.+|. --|..-||
T Consensus 88 ~fI~k~~Wk~lfgk-~~d~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~ 157 (193)
T 3cue_D 88 EVLSKCAFKIFLNI-TPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQL 157 (193)
T ss_dssp HHHHHHHHHHHSSC-CCCCBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCC-CCccceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCC
Confidence 566 3478777775 4578889999999999 7776665544 67655 567888887 33777788
No 21
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=56.86 E-value=6.9 Score=27.64 Aligned_cols=62 Identities=16% Similarity=0.293 Sum_probs=43.0
Q ss_pred cHHH-HHHHhccCCCCCceeEEecCCCeEEE-eCchhhHHhh-cccccCCcCchhhh-----hccccCCce
Q 034429 19 PFLI-KTYDMVDDSSTDEIVSWSDNKNSFVV-WNPPEFARLL-LPTYFKHNNFSSFI-----RQLNTYVQI 81 (95)
Q Consensus 19 ~F~~-kL~~ml~~~~~~~iI~W~~~G~sfiI-~d~~~f~~~v-Lp~~F~~~~~~SF~-----RqLn~YGF~ 81 (95)
.|+. .+|.++=.. ..+...|+++++.++| .|..-+..-| +|.-...-+|..|. --|..-||.
T Consensus 85 ~fI~k~~Wk~lFgk-~ad~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~ 154 (200)
T 1sz7_A 85 DVIAKVAFKMYLGI-TPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMA 154 (200)
T ss_dssp HHHHHTHHHHHHSC-CCEEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHhCC-CCccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhHHHHHHHHHHhCCCE
Confidence 4553 366666554 4588999999999999 7776555433 67655667888887 337777877
No 22
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=24.49 E-value=68 Score=18.07 Aligned_cols=29 Identities=17% Similarity=0.433 Sum_probs=18.0
Q ss_pred CcHHHHHHHhccCCCCCce-eEEecCCCeEEE
Q 034429 18 APFLIKTYDMVDDSSTDEI-VSWSDNKNSFVV 48 (95)
Q Consensus 18 ~~F~~kL~~ml~~~~~~~i-I~W~~~G~sfiI 48 (95)
.+|...|..+...-.+++| +.| ||+.+.+
T Consensus 17 ekfaailikvfaelgyndinvtw--dgdtvtv 46 (62)
T 2gjh_A 17 EKFAAILIKVFAELGYNDINVTW--DGDTVTV 46 (62)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEE--CSSCEEE
T ss_pred HHHHHHHHHHHHHhCcccceeEE--cCCEEEE
Confidence 3566667766666555544 678 5666655
No 23
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=23.80 E-value=34 Score=22.65 Aligned_cols=27 Identities=26% Similarity=0.651 Sum_probs=17.6
Q ss_pred HhccCCCC-----CceeEEecCC-------CeEEEeCch
Q 034429 26 DMVDDSST-----DEIVSWSDNK-------NSFVVWNPP 52 (95)
Q Consensus 26 ~ml~~~~~-----~~iI~W~~~G-------~sfiI~d~~ 52 (95)
++|+-|+. ...|.|++++ +++.|+|.+
T Consensus 15 rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~ 53 (318)
T 4ggc_A 15 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSAS 53 (318)
T ss_dssp EEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETT
T ss_pred EEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECC
Confidence 46665543 3579999864 567777754
No 24
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii}
Probab=22.30 E-value=61 Score=24.69 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=28.1
Q ss_pred CCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCch
Q 034429 17 PAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPP 52 (95)
Q Consensus 17 ~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~ 52 (95)
.+..+..|-+++.....+-.|.+++||+.+.|.|++
T Consensus 220 ~~~~l~~l~~~v~~~~adlgia~DgDaDR~~~vd~~ 255 (455)
T 1wqa_A 220 NEENLKEFMEIVKALGADFGVAQDGDADRAVFIDEN 255 (455)
T ss_dssp CTTTTHHHHHHHHHHTCSEEEEECTTSCCEEEEETT
T ss_pred chhHHHHHHHHHHHcCCCEEEEECCCCCeEEEEeCC
Confidence 345677888888776667789999999999988753
Done!