BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034431
         (95 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From
          Toxoplasma Gondii At 1.5 A Resolution
          Length = 89

 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          MP  +QQ A+      ++ Y  E             +A  +KKEFD  + P WHCVVG++
Sbjct: 13 MPEDLQQDAIDCANQALEKYNIEKD-----------IAAFIKKEFDRKHNPTWHCVVGRN 61

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF I  ++VLLFK+
Sbjct: 62 FGSYVTHETHHFIYFYIGQVAVLLFKS 88


>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of
          Dynein Light Chain Lc8 From Drosophila
 pdb|2P2T|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 Bound To
          Residues 123-138 Of Intermediate Chain Ic74
 pdb|3E2B|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 In Complex
          With A Peptide Derived From Swallow
 pdb|3BRI|A Chain A, Crystal Structure Of Apo-Lc8
 pdb|3FM7|E Chain E, Quaternary Structure Of Drosophila Melanogaster
          IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
          Chains With Dynein Intermediate Chain
 pdb|3FM7|F Chain F, Quaternary Structure Of Drosophila Melanogaster
          IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
          Chains With Dynein Intermediate Chain
 pdb|3GLW|A Chain A, Quaternary Structure Of Drosophila Melanogaster
          IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
          Chains With Dynein Intermediate Chain
          Length = 89

 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 13 MSEEMQQDAVDCATQALEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 62 FGSYVTHETRHFIYFYLGQVAILLFKS 88


>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
          Intermediate Chain Complex
 pdb|2PG1|B Chain B, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
          Intermediate Chain Complex
 pdb|2PG1|C Chain C, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
          Intermediate Chain Complex
 pdb|2PG1|D Chain D, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
          Intermediate Chain Complex
 pdb|3DVT|A Chain A, Biochemical And Structural Characterization Of The Pak1-
          Lc8 Interaction
 pdb|3DVT|B Chain B, Biochemical And Structural Characterization Of The Pak1-
          Lc8 Interaction
 pdb|3DVT|C Chain C, Biochemical And Structural Characterization Of The Pak1-
          Lc8 Interaction
 pdb|3DVT|D Chain D, Biochemical And Structural Characterization Of The Pak1-
          Lc8 Interaction
 pdb|3DVT|E Chain E, Biochemical And Structural Characterization Of The Pak1-
          Lc8 Interaction
 pdb|3DVT|F Chain F, Biochemical And Structural Characterization Of The Pak1-
          Lc8 Interaction
          Length = 91

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 15 MSEEMQQDAVDCATQALEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 63

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 64 FGSYVTHETRHFIYFYLGQVAILLFKS 90


>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
 pdb|1CMI|B Chain B, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
          Length = 85

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ ++      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 9  MSEEMQQDSVECATQALEKYNIEKD-----------IAAHIKKEFDKKYNPTWHCIVGRN 57

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 58 FGSYVTHETKHFIYFYLGQVAILLFKS 84


>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
          Mechanism Of Domain Swapped Dimer Assembly
 pdb|2XQQ|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
          Vitro Evolved Peptide (Ac-Srgtqte).
 pdb|2XQQ|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
          Vitro Evolved Peptide (Ac-Srgtqte).
 pdb|2XQQ|C Chain C, Human Dynein Light Chain (Dynll2) In Complex With An In
          Vitro Evolved Peptide (Ac-Srgtqte).
 pdb|2XQQ|D Chain D, Human Dynein Light Chain (Dynll2) In Complex With An In
          Vitro Evolved Peptide (Ac-Srgtqte)
          Length = 89

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 62 FGSYVTHETKHFIYFYLGQVAILLFKS 88


>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain
          (Dlc8)
 pdb|1F3C|B Chain B, Refined Solution Structure Of 8kda Dynein Light Chain
          (Dlc8)
 pdb|1F95|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
          Bim Peptide Complex
 pdb|1F95|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
          Bim Peptide Complex
 pdb|1F96|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
          Nnos Peptide Complex
 pdb|1F96|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
          Nnos Peptide Complex
          Length = 89

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ ++      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKD-----------IAAHIKKEFDKKYNPTWHCIVGRN 61

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 62 FGSYVTHETKHFIYFYLGQVAILLFKS 88


>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e  SWA
          Length = 89

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 11/86 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 13 MSEEMQQDAVDCATQALEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFK 86
          FGS+VTH    F+YF +  +++LLFK
Sbjct: 62 FGSYVTHETRHFIYFYLGQVAILLFK 87


>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
          Vitro Evolved Peptide Dimerized By Leucine Zipper
 pdb|3P8M|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
          Vitro Evolved Peptide Dimerized By Leucine Zipper
          Length = 92

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 16 MSEDMQQDAVDCATQAMEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 64

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 65 FGSYVTHETKHFIYFYLGQVAILLFKS 91


>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their
          Pro- Apoptotic Ligands
 pdb|1RE6|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their
          Pro- Apoptotic Ligands
          Length = 94

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 18 MSEDMQQDAVDCATQAMEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 66

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 67 FGSYVTHETKHFIYFYLGQVAILLFKS 93


>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
           Plasmodium Falciparum
 pdb|1YO3|B Chain B, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
           Plasmodium Falciparum
 pdb|1YO3|C Chain C, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
           Plasmodium Falciparum
          Length = 102

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 38/51 (74%)

Query: 37  LARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSLSVLLFKT 87
           +A  +KKEFD  Y P WHCVVG++FGS+VTH    F+YF I  +++LLFK+
Sbjct: 51  IAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQVAILLFKS 101


>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p
 pdb|3DVH|B Chain B, Lc8 Point Mutant K36p
 pdb|3DVH|C Chain C, Lc8 Point Mutant K36p
 pdb|3DVP|A Chain A, Pak1 Peptide Bound Lc8
 pdb|3DVP|B Chain B, Pak1 Peptide Bound Lc8
          Length = 91

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E        P+   +A  +KKEFD  Y P WHC+VG++
Sbjct: 15 MSEEMQQDAVDCATQALEKYNIE--------PD---IAAYIKKEFDKKYNPTWHCIVGRN 63

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 64 FGSYVTHETRHFIYFYLGQVAILLFKS 90


>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
          Mechanism Of Domain Swapped Dimer Assembly
          Length = 91

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 13/89 (14%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG+S
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRS 61

Query: 61 --FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
            FGS+VTH    F+YF +  +++LLFK+
Sbjct: 62 GNFGSYVTHETKHFIYFYLGQVAILLFKS 90


>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The
          Molecular Basis For The Dynein Light Chain - Nuclear
          Pore Interaction
 pdb|4DS1|C Chain C, The Structure Of A Yeast Dyn2-Nup159 Complex And The
          Molecular Basis For The Dynein Light Chain - Nuclear
          Pore Interaction
          Length = 97

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 11/83 (13%)

Query: 5  MQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKSFGSF 64
          +++  L  ++  +D Y  E             +A  +KK+ D  YG  WH +VGK+FGS+
Sbjct: 25 LKEDILTISKDALDKYQLERD-----------IAGTVKKQLDVKYGNTWHVIVGKNFGSY 73

Query: 65 VTHSPAGFLYFSIDSLSVLLFKT 87
          VTH    F+YF I  L+ L+FKT
Sbjct: 74 VTHEKGHFVYFYIGPLAFLVFKT 96


>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
           Factor (Nsf)
          Length = 273

 Score = 30.0 bits (66), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 35  THLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAG 71
           T   +A+KK FDDAY     CVV       + + P G
Sbjct: 106 TAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG 142


>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
          Length = 272

 Score = 29.6 bits (65), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 35  THLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAG 71
           T   +A+KK FDDAY     CVV       + + P G
Sbjct: 107 TAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG 143


>pdb|3EOJ|A Chain A, Fmo Protein From Prosthecochloris Aestuarii 2k At 1.3a
           Resolution
          Length = 366

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 8   HALRFTRSLVDDYYSESSAPKTSRPNPTHL 37
           H+  F  S+V+ YY  S A + + PNP ++
Sbjct: 110 HSFSFEGSVVNMYYYRSDAVRRNIPNPIYM 139


>pdb|3VDI|A Chain A, Structure Of The Fmo Protein From Pelodictyon Phaeum
          Length = 367

 Score = 27.7 bits (60), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 8   HALRFTRSLVDDYYSESSAPKTSRPNPTHL 37
           H   F  S+V+ YY  S A + + PNP ++
Sbjct: 111 HKFSFEGSVVNMYYYRSDAVRRNVPNPVYM 140


>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1
          Length = 361

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 21  YSESSA----PKTSRPNPTHLARA--LKKEFDDAYGPAWHCVV 57
           YS+SS     PK++   P ++A    LKKE+D      W C V
Sbjct: 162 YSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKVADVWSCGV 204


>pdb|3TX7|B Chain B, Crystal Structure Of Lrh-1BETA-Catenin Complex
          Length = 352

 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)

Query: 38  ARALKKEFDDAYGPAWHCVVGKSF-GSFVTHSPAGFLYFSIDSLSVLLFKTE 88
           +RA+K E+ D Y  +   ++G S+  S+ T SPA     SI  L + L K E
Sbjct: 77  SRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPA-----SIPHLILELLKCE 123


>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase
 pdb|3ZUT|B Chain B, The Structure Of Ost1 (D160a) Kinase
          Length = 362

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 21  YSESSA----PKTSRPNPTHLARA--LKKEFDDAYGPAWHCVV 57
           YS+SS     PK++   P ++A    LKKE+D      W C V
Sbjct: 163 YSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKVADVWSCGV 205


>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6
 pdb|3UC4|B Chain B, The Crystal Structure Of Snf1-Related Kinase 2.6
          Length = 362

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 21  YSESSA----PKTSRPNPTHLARA--LKKEFDDAYGPAWHCVV 57
           YS+SS     PK++   P ++A    LKKE+D      W C V
Sbjct: 163 YSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKVADVWSCGV 205


>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6
 pdb|3UDB|B Chain B, Crystal Structure Of Snrk2.6
 pdb|3UDB|C Chain C, Crystal Structure Of Snrk2.6
 pdb|3UDB|D Chain D, Crystal Structure Of Snrk2.6
 pdb|3UDB|E Chain E, Crystal Structure Of Snrk2.6
 pdb|3UDB|F Chain F, Crystal Structure Of Snrk2.6
          Length = 317

 Score = 26.2 bits (56), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 25  SAPKTSRPNPTHLARA--LKKEFDDAYGPAWHCVV 57
           S PK++   P ++A    LKKE+D      W C V
Sbjct: 171 SQPKSAVGTPAYIAPEVLLKKEYDGKVADVWSCGV 205


>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
           With Gold
 pdb|3ZUU|B Chain B, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
           With Gold
          Length = 362

 Score = 25.8 bits (55), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 21  YSESSA----PKTSRPNPTHLARA--LKKEFDDAYGPAWHCVV 57
           YS+SS     PK +   P ++A    LKKE+D      W C V
Sbjct: 163 YSKSSVLHSQPKDTVGTPAYIAPEVLLKKEYDGKVADVWSCGV 205


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,804,678
Number of Sequences: 62578
Number of extensions: 96452
Number of successful extensions: 173
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 155
Number of HSP's gapped (non-prelim): 23
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)