Query 034431
Match_columns 95
No_of_seqs 103 out of 533
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 03:51:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjs_A Dynein light chain moto 100.0 6.8E-39 2.3E-43 204.3 8.2 77 1-88 13-89 (89)
2 4ds1_A Dynein light chain 1, c 100.0 3E-38 1E-42 204.2 10.1 77 1-88 21-97 (97)
3 1yo3_A Dynein light chain 1; s 100.0 8.6E-38 2.9E-42 203.7 10.3 77 1-88 26-102 (102)
4 1use_A VAsp, vasodilator-stimu 75.2 7.8 0.00027 21.0 4.6 34 3-49 10-43 (45)
5 1eci_A Ectatomin; pore-forming 56.8 5.5 0.00019 20.4 1.5 15 33-47 22-36 (37)
6 1eci_B Ectatomin; pore-forming 50.9 4.4 0.00015 20.4 0.5 15 33-47 20-34 (34)
7 3gzx_A Biphenyl dioxygenase su 41.5 80 0.0027 24.3 6.6 45 39-88 44-89 (457)
8 4ebb_A Dipeptidyl peptidase 2; 37.7 30 0.001 26.4 3.7 28 36-65 111-141 (472)
9 2bmo_A Oxygenase-alpha NBDO; n 36.9 99 0.0034 23.2 6.4 44 40-88 24-68 (447)
10 1wgn_A UBAP1, ubiquitin associ 34.4 62 0.0021 18.6 3.7 30 10-49 33-62 (63)
11 3vca_A Ring-hydroxylating diox 33.7 1.2E+02 0.0041 22.8 6.4 45 39-88 30-75 (412)
12 3kb2_A SPBC2 prophage-derived 32.4 63 0.0021 19.8 4.0 22 33-54 152-173 (173)
13 2b1x_A Naphthalene dioxygenase 32.2 1.3E+02 0.0044 22.8 6.4 44 40-88 33-77 (470)
14 3i1i_A Homoserine O-acetyltran 30.9 17 0.0006 24.7 1.2 35 33-67 128-162 (377)
15 2gbw_A Biphenyl 2,3-dioxygenas 30.3 1.5E+02 0.005 22.3 6.4 44 40-88 25-69 (454)
16 1zoq_C CREB-binding protein, i 30.3 69 0.0024 17.3 3.6 14 33-46 29-42 (47)
17 1wj7_A Hypothetical protein (R 30.3 47 0.0016 20.9 3.0 35 11-58 55-90 (104)
18 2b61_A Homoserine O-acetyltran 29.7 25 0.00086 24.2 1.9 35 33-67 135-169 (377)
19 3n0q_A Putative aromatic-ring 29.3 1.6E+02 0.0054 22.1 6.4 45 39-88 28-73 (409)
20 1uli_A Biphenyl dioxygenase la 28.8 1.6E+02 0.0055 22.2 6.4 44 40-88 43-87 (460)
21 3swj_A CHUZ, putative uncharac 28.5 1.5E+02 0.0052 20.6 6.0 52 3-67 65-119 (251)
22 2jt1_A PEFI protein; solution 28.2 61 0.0021 18.8 3.1 34 1-41 1-34 (77)
23 1wyo_A Protein EB3, microtubul 27.7 61 0.0021 21.7 3.4 43 9-51 81-128 (159)
24 3k6g_A Telomeric repeat-bindin 27.6 14 0.00047 23.6 0.1 22 34-55 42-63 (111)
25 3gas_A Heme oxygenase; FMN-bin 27.4 1.6E+02 0.0056 20.7 6.8 52 3-67 65-119 (259)
26 3byp_A CZRB protein; membrane 27.2 53 0.0018 18.9 2.8 23 35-58 60-82 (94)
27 1ns5_A Hypothetical protein YB 26.9 60 0.0021 21.5 3.3 29 34-64 81-109 (155)
28 3vba_A Isopropylmalate/citrama 26.8 26 0.0009 23.9 1.5 31 34-64 32-66 (176)
29 2kzv_A Uncharacterized protein 26.3 30 0.001 21.0 1.6 45 1-50 1-49 (92)
30 1to0_A Hypothetical UPF0247 pr 25.1 76 0.0026 21.3 3.6 30 34-64 85-114 (167)
31 1o6d_A Hypothetical UPF0247 pr 24.9 68 0.0023 21.5 3.3 29 34-64 80-108 (163)
32 3kyz_A Sensor protein PFES; AP 23.2 1.3E+02 0.0044 19.3 4.2 49 1-60 15-63 (125)
33 3e9v_A Protein BTG2; B-cell tr 22.6 65 0.0022 20.6 2.7 21 34-54 28-48 (120)
34 1u83_A Phosphosulfolactate syn 22.3 78 0.0027 23.1 3.4 56 1-60 136-195 (276)
35 2lfv_A Protein DAMX; cell divi 27.7 19 0.00064 22.5 0.0 18 48-65 58-75 (106)
36 2pkp_A Homoaconitase small sub 21.9 37 0.0013 22.9 1.5 31 34-64 30-64 (170)
37 2qjz_A Microtubule-associated 21.7 1.3E+02 0.0044 19.1 4.0 43 9-51 64-111 (123)
38 1qwg_A PSL synthase;, (2R)-pho 21.6 2.3E+02 0.0078 20.3 6.1 56 1-60 111-171 (251)
39 3ajm_A Programmed cell death p 20.1 50 0.0017 23.3 1.9 14 34-47 124-137 (213)
No 1
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=100.00 E-value=6.8e-39 Score=204.31 Aligned_cols=77 Identities=44% Similarity=0.860 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHHhhhcCCCceEEEEccceeeeEEEcCCcEEEEEeCCE
Q 034431 1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSL 80 (95)
Q Consensus 1 M~~emq~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~f~~~~~ 80 (95)
||++||++|+++|.+|+++|+. +++||++||++||++|||+||||||++|||+|||++++||||++|++
T Consensus 13 M~~emq~~a~~~a~~al~~~~~-----------ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~g~~ 81 (89)
T 3rjs_A 13 MPEDLQQDAIDCANQALEKYNI-----------EKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYIGQV 81 (89)
T ss_dssp SCHHHHHHHHHHHHHHHHHCCS-----------HHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHHHHHCCc-----------HHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEECCE
Confidence 9999999999999999999874 68999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeC
Q 034431 81 SVLLFKTE 88 (95)
Q Consensus 81 ~iLl~ks~ 88 (95)
+|||||++
T Consensus 82 ~iLlfKtg 89 (89)
T 3rjs_A 82 AVLLFKSG 89 (89)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecC
Confidence 99999986
No 2
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-38 Score=204.23 Aligned_cols=77 Identities=38% Similarity=0.773 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHHhhhcCCCceEEEEccceeeeEEEcCCcEEEEEeCCE
Q 034431 1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSL 80 (95)
Q Consensus 1 M~~emq~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~f~~~~~ 80 (95)
||++||++|+++|.+|+++|++ +++||++||++||++|||+||||||++|||+|||++++||||++|++
T Consensus 21 M~~emq~~a~~~a~~al~~~~~-----------ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~ 89 (97)
T 4ds1_A 21 ITDKLKEDILTISKDALDKYQL-----------ERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPL 89 (97)
T ss_dssp ECHHHHHHHHHHHHHHHHHCSS-----------HHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCE
Confidence 8999999999999999999864 78999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeC
Q 034431 81 SVLLFKTE 88 (95)
Q Consensus 81 ~iLl~ks~ 88 (95)
+|||||++
T Consensus 90 aiLlfKtg 97 (97)
T 4ds1_A 90 AFLVFKTA 97 (97)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999986
No 3
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=100.00 E-value=8.6e-38 Score=203.74 Aligned_cols=77 Identities=43% Similarity=0.867 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHHhhhcCCCceEEEEccceeeeEEEcCCcEEEEEeCCE
Q 034431 1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSL 80 (95)
Q Consensus 1 M~~emq~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~f~~~~~ 80 (95)
||++||++|+++|.+|+++|++ +++||++||++||++|||+||||||++|||+|||++++||||++|++
T Consensus 26 M~~emq~~a~~~a~~Al~k~~~-----------ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~~ 94 (102)
T 1yo3_A 26 MTEEMQIDAIDCANQALQKYNV-----------EKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQV 94 (102)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSS-----------HHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHHHHHcCc-----------HHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECCE
Confidence 9999999999999999999864 78999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeC
Q 034431 81 SVLLFKTE 88 (95)
Q Consensus 81 ~iLl~ks~ 88 (95)
+|||||++
T Consensus 95 aiLlfKt~ 102 (102)
T 1yo3_A 95 AILLFKSG 102 (102)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999985
No 4
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=75.17 E-value=7.8 Score=21.05 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHHhhhcC
Q 034431 3 AHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAY 49 (95)
Q Consensus 3 ~emq~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~lD~~y 49 (95)
+.++++|++..+.-+++-. ++|-..|+++|.++.
T Consensus 10 e~~KqEIL~E~RkElqK~K-------------~EIIeAi~~El~~~~ 43 (45)
T 1use_A 10 QRVKQELLEEVKKELQKVK-------------EEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhcC
Confidence 3578899999999999854 579999999998873
No 5
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=56.82 E-value=5.5 Score=20.38 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHhhh
Q 034431 33 NPTHLARALKKEFDD 47 (95)
Q Consensus 33 ~~~~iA~~IK~~lD~ 47 (95)
...+||.+||++.|+
T Consensus 22 c~g~iat~ik~~c~k 36 (37)
T 1eci_A 22 CSGDIATYIKRECGK 36 (37)
T ss_dssp BCHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHhcc
Confidence 357999999999886
No 6
>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=50.93 E-value=4.4 Score=20.44 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHhhh
Q 034431 33 NPTHLARALKKEFDD 47 (95)
Q Consensus 33 ~~~~iA~~IK~~lD~ 47 (95)
...+||.+||++.|+
T Consensus 20 c~g~iat~ik~~c~k 34 (34)
T 1eci_B 20 CEGSIATMIKKKCDK 34 (34)
T ss_dssp BSTTHHHHHHHHSCC
T ss_pred ccccHHHHHHHHhCC
Confidence 356899999998774
No 7
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=41.48 E-value=80 Score=24.25 Aligned_cols=45 Identities=11% Similarity=0.296 Sum_probs=33.1
Q ss_pred HHHHHHhhhcCCCceEEEE-ccceeeeEEEcCCcEEEEEeCCEEEEEEeeC
Q 034431 39 RALKKEFDDAYGPAWHCVV-GKSFGSFVTHSPAGFLYFSIDSLSVLLFKTE 88 (95)
Q Consensus 39 ~~IK~~lD~~yg~~WhcIV-G~~Fgs~vth~~~~~i~f~~~~~~iLl~ks~ 88 (95)
+....++++-|.+.|++|. -.... +++.++-+.+++..|+|||..
T Consensus 44 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~~~~vvv~R~~ 89 (457)
T 3gzx_A 44 DLYQLELERVFGRSWLMLGHETHIP-----KIGDYLTTYMGEDPVIMVRQK 89 (457)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCEEEeEHHHcC-----CCCCeEEEEECCEEEEEEECC
Confidence 4456788899999999987 23332 245677778899999999864
No 8
>4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A*
Probab=37.67 E-value=30 Score=26.39 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhhcCC---CceEEEEccceeeeE
Q 034431 36 HLARALKKEFDDAYG---PAWHCVVGKSFGSFV 65 (95)
Q Consensus 36 ~iA~~IK~~lD~~yg---~~WhcIVG~~Fgs~v 65 (95)
|+|.+|+ .+.+.++ ..| +++|+|||..+
T Consensus 111 D~a~fi~-~~k~~~~~~~~pw-I~~GGSY~G~L 141 (472)
T 4ebb_A 111 DFAELLR-ALRRDLGAQDAPA-IAFGGSYGGML 141 (472)
T ss_dssp HHHHHHH-HHHHHTTCTTCCE-EEEEETHHHHH
T ss_pred HHHHHHH-HHHhhcCCCCCCE-EEEccCccchh
Confidence 4444442 3344443 468 66799998543
No 9
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=36.92 E-value=99 Score=23.19 Aligned_cols=44 Identities=11% Similarity=0.316 Sum_probs=31.9
Q ss_pred HHHHHhhhcCCCceEEEEc-cceeeeEEEcCCcEEEEEeCCEEEEEEeeC
Q 034431 40 ALKKEFDDAYGPAWHCVVG-KSFGSFVTHSPAGFLYFSIDSLSVLLFKTE 88 (95)
Q Consensus 40 ~IK~~lD~~yg~~WhcIVG-~~Fgs~vth~~~~~i~f~~~~~~iLl~ks~ 88 (95)
....++++-|...|++|-- .... +++.++-+.+++..|+|||..
T Consensus 24 ~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~~~~vvv~R~~ 68 (447)
T 2bmo_A 24 LFQHELKTIFARNWLFLTHDSLIP-----SPGDYVKAKMGVDEVIVSRQN 68 (447)
T ss_dssp HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHhhccCCeEEeEHHHCC-----CCCCeEEEEECCeeEEEEECC
Confidence 3456788888999999862 2221 246677788899999999964
No 10
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.41 E-value=62 Score=18.61 Aligned_cols=30 Identities=7% Similarity=-0.102 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHHhhhcC
Q 034431 10 LRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAY 49 (95)
Q Consensus 10 i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~lD~~y 49 (95)
-+.|+.||+.-++ |.+.+++.|-.+.|-.-
T Consensus 33 ~~qA~kALKat~~----------NvErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 33 YECVLRAMKKKGE----------NIEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHHHHCS----------CHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHcCC----------CHHHHHHHHHhCCCCCC
Confidence 3578899998654 68999999998888643
No 11
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=33.70 E-value=1.2e+02 Score=22.83 Aligned_cols=45 Identities=7% Similarity=0.293 Sum_probs=33.9
Q ss_pred HHHHHHhhhcCCCceEEEEc-cceeeeEEEcCCcEEEEEeCCEEEEEEeeC
Q 034431 39 RALKKEFDDAYGPAWHCVVG-KSFGSFVTHSPAGFLYFSIDSLSVLLFKTE 88 (95)
Q Consensus 39 ~~IK~~lD~~yg~~WhcIVG-~~Fgs~vth~~~~~i~f~~~~~~iLl~ks~ 88 (95)
+....++++-|...|++|.- .... +++.++-+.+++..++|||..
T Consensus 30 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~g~~vvv~R~~ 75 (412)
T 3vca_A 30 EVYALDLQHIFYKQWLYAVPVCQLA-----KAGSYTTLRVGAYEVVIVRSR 75 (412)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGGC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHHHHhccCEEEEEHHHCC-----CCCCeEEEEECCEEEEEEEcC
Confidence 44567888899999999873 3332 346777888999999999964
No 12
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=32.36 E-value=63 Score=19.77 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHhhhcCCCceE
Q 034431 33 NPTHLARALKKEFDDAYGPAWH 54 (95)
Q Consensus 33 ~~~~iA~~IK~~lD~~yg~~Wh 54 (95)
+..++++.|.+.+++...+.||
T Consensus 152 ~~~ev~~~I~~~~~~~~~~~~~ 173 (173)
T 3kb2_A 152 SSDEIAKDIIFLVELEHHHHHH 173 (173)
T ss_dssp CHHHHHHHHHHHHHHGGGCCC-
T ss_pred CHHHHHHHHHHHHhCCCcccCC
Confidence 5778888888888887777776
No 13
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=32.24 E-value=1.3e+02 Score=22.79 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=31.3
Q ss_pred HHHHHhhhcCCCceEEEE-ccceeeeEEEcCCcEEEEEeCCEEEEEEeeC
Q 034431 40 ALKKEFDDAYGPAWHCVV-GKSFGSFVTHSPAGFLYFSIDSLSVLLFKTE 88 (95)
Q Consensus 40 ~IK~~lD~~yg~~WhcIV-G~~Fgs~vth~~~~~i~f~~~~~~iLl~ks~ 88 (95)
....+++.-|...|++|- -..+. +++.++-+.+++..|+|||..
T Consensus 33 ~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~g~~vvv~R~~ 77 (470)
T 2b1x_A 33 VHDVERERIFGHAWVFLAHESEIP-----ERGDYVVRYISEDQFIVCRDE 77 (470)
T ss_dssp HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHHhhcCCeEeeeHHHCC-----CCCCeEEEEECCeEEEEEEcC
Confidence 345677778899999975 23332 245677778899999999964
No 14
>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str}
Probab=30.88 E-value=17 Score=24.75 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHhhhcCCCceEEEEccceeeeEEE
Q 034431 33 NPTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTH 67 (95)
Q Consensus 33 ~~~~iA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth 67 (95)
...++|+.|..-+|..-....+++||-|+|+.+.-
T Consensus 128 ~~~~~~~d~~~~l~~l~~~~~~ilvGhS~Gg~ia~ 162 (377)
T 3i1i_A 128 TFLDVARMQCELIKDMGIARLHAVMGPSAGGMIAQ 162 (377)
T ss_dssp CHHHHHHHHHHHHHHTTCCCBSEEEEETHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCcEeeEEeeCHhHHHHH
Confidence 46889999998888764455667899999987653
No 15
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=30.35 E-value=1.5e+02 Score=22.32 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=31.5
Q ss_pred HHHHHhhhcCCCceEEEEc-cceeeeEEEcCCcEEEEEeCCEEEEEEeeC
Q 034431 40 ALKKEFDDAYGPAWHCVVG-KSFGSFVTHSPAGFLYFSIDSLSVLLFKTE 88 (95)
Q Consensus 40 ~IK~~lD~~yg~~WhcIVG-~~Fgs~vth~~~~~i~f~~~~~~iLl~ks~ 88 (95)
....+++.-|...|++|-- ..+. +++.++-+.+++..|+|||..
T Consensus 25 ~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~~~~vvv~R~~ 69 (454)
T 2gbw_A 25 VYALEIERIFSRAWLMLGHESLVP-----KPGDFITTYMAEDKVILSHQS 69 (454)
T ss_dssp HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHHhhcCcEEEeEHHHCC-----CCCCeEEEEECCeEEEEEEcC
Confidence 3456778888999999862 3331 246677778899999999864
No 16
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=30.33 E-value=69 Score=17.29 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHHhh
Q 034431 33 NPTHLARALKKEFD 46 (95)
Q Consensus 33 ~~~~iA~~IK~~lD 46 (95)
|..-+|.+||+.--
T Consensus 29 nPqLMAAfIkQR~~ 42 (47)
T 1zoq_C 29 NPQLMAAFIKQRTA 42 (47)
T ss_dssp CHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHH
Confidence 47889999998643
No 17
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.26 E-value=47 Score=20.91 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=23.7
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHHhhhcC-CCceEEEEc
Q 034431 11 RFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAY-GPAWHCVVG 58 (95)
Q Consensus 11 ~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~lD~~y-g~~WhcIVG 58 (95)
+.|+.||...+. +++..|..-|+..- ...|.++.+
T Consensus 55 eeAr~AL~~~ng-------------Dl~~AI~~Lleg~~~~~~W~~~~k 90 (104)
T 1wj7_A 55 DECVIALHDCNG-------------DVNRAINVLLEGNPDTHSWEMVGK 90 (104)
T ss_dssp HHHHHHHHHHTS-------------CHHHHHHHHHTCSSSCSSCSSCCC
T ss_pred HHHHHHHHHcCC-------------CHHHHHHHHHhCCCcCCceeeecc
Confidence 347888888653 45666666666553 467999875
No 18
>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40
Probab=29.73 E-value=25 Score=24.18 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHhhhcCCCceEEEEccceeeeEEE
Q 034431 33 NPTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTH 67 (95)
Q Consensus 33 ~~~~iA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth 67 (95)
...++|+.|..-+|..-....+++||-|+|+.+..
T Consensus 135 ~~~~~~~~l~~~l~~l~~~~~~~lvGhS~Gg~ia~ 169 (377)
T 2b61_A 135 VVQDIVKVQKALLEHLGISHLKAIIGGSFGGMQAN 169 (377)
T ss_dssp CHHHHHHHHHHHHHHTTCCCEEEEEEETHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCcceeEEEEEChhHHHHH
Confidence 46888999988887754466666889999987653
No 19
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=29.25 E-value=1.6e+02 Score=22.14 Aligned_cols=45 Identities=7% Similarity=0.417 Sum_probs=33.7
Q ss_pred HHHHHHhhhcCCCceEEEE-ccceeeeEEEcCCcEEEEEeCCEEEEEEeeC
Q 034431 39 RALKKEFDDAYGPAWHCVV-GKSFGSFVTHSPAGFLYFSIDSLSVLLFKTE 88 (95)
Q Consensus 39 ~~IK~~lD~~yg~~WhcIV-G~~Fgs~vth~~~~~i~f~~~~~~iLl~ks~ 88 (95)
+....++++-|...|++|. -.... +++.++-+.+++..++|||..
T Consensus 28 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~g~~vvv~R~~ 73 (409)
T 3n0q_A 28 EVFQTDLQEIFYKEWLFAIPACELD-----KPGSYVTHQVGNYNVIIVRGA 73 (409)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCEEEEEHHHCC-----CCCCeEEEEECCEEEEEEEcC
Confidence 4456778888999999987 33332 346777888999999999964
No 20
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=28.77 E-value=1.6e+02 Score=22.21 Aligned_cols=44 Identities=11% Similarity=0.328 Sum_probs=31.4
Q ss_pred HHHHHhhhcCCCceEEEEc-cceeeeEEEcCCcEEEEEeCCEEEEEEeeC
Q 034431 40 ALKKEFDDAYGPAWHCVVG-KSFGSFVTHSPAGFLYFSIDSLSVLLFKTE 88 (95)
Q Consensus 40 ~IK~~lD~~yg~~WhcIVG-~~Fgs~vth~~~~~i~f~~~~~~iLl~ks~ 88 (95)
....+++.-|...|++|-- .... +++.++-+.+++..|+|||..
T Consensus 43 ~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~i~~~~vvv~R~~ 87 (460)
T 1uli_A 43 LYEQELERIFGRSWLLMGHETQIP-----KAGDFMTNYMGEDPVMVVRQK 87 (460)
T ss_dssp HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHhhhcCceEEEEHHHCC-----CCCCeEEEEECCeEEEEEEcC
Confidence 4467788889999999752 2221 245677778899999999864
No 21
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}
Probab=28.46 E-value=1.5e+02 Score=20.64 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHHhhhcCCCceEEEE---ccceeeeEEE
Q 034431 3 AHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVV---GKSFGSFVTH 67 (95)
Q Consensus 3 ~emq~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~lD~~yg~~WhcIV---G~~Fgs~vth 67 (95)
++.+..++++++.|-..- +...++..++.-|++. ...|=..+ |..++|.+.+
T Consensus 65 ~~~r~~lv~m~~~a~~~~------------d~~~l~~e~~~ll~~~-~~~~LAT~~~dG~P~~s~v~~ 119 (251)
T 3swj_A 65 NTIKDTIISLCMSAKSEQ------------NFSGVEKELNEFMLSF-NSVALATLNANGEVVCSYAPF 119 (251)
T ss_dssp TTHHHHHHHHHHHHSSSC------------CCSHHHHHHHHHHHTC-SEEEEEEECTTSCEEEEEEEE
T ss_pred HHHHHHHHHHHHhccccC------------ChhhHHHHHHHHHhhC-CEEEEEEECCCCCEEEEEEEE
Confidence 567888899888877652 4678999999998865 45555556 4456665544
No 22
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=28.16 E-value=61 Score=18.81 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHHH
Q 034431 1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARAL 41 (95)
Q Consensus 1 M~~emq~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~I 41 (95)
|++..++.|++.+++-++..+. -+ +...+||+.+
T Consensus 1 ~~~~r~~~IL~~I~~~i~~~~g---~~----psv~EIa~~l 34 (77)
T 2jt1_A 1 MSESIVTKIISIVQERQNMDDG---AP----VKTRDIADAA 34 (77)
T ss_dssp CCCTHHHHHHHHHHHHHHHHTT---SC----EEHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccC---CC----cCHHHHHHHH
Confidence 8888899999998888777411 01 2356777663
No 23
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.68 E-value=61 Score=21.74 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhccCCCCCCCC---CC--CHHHHHHHHHHHhhhcCCC
Q 034431 9 ALRFTRSLVDDYYSESSAPKTS---RP--NPTHLARALKKEFDDAYGP 51 (95)
Q Consensus 9 ~i~~~~~a~~~~~~~~~~~~~~---~~--~~~~iA~~IK~~lD~~yg~ 51 (95)
=+.+.++|++++..++.++... +. +.-+.++.+|+.+|+.|++
T Consensus 81 N~k~lQ~af~k~gV~k~ipV~kLvkgk~qdNlEFlqWfk~f~d~n~~~ 128 (159)
T 1wyo_A 81 NFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDG 128 (159)
T ss_dssp HHHHHHHHHHHHTCCCCCCHHHHTTTCSHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHcCCCCccCHHHHhcCCchhHHHHHHHHHHHHHHcCCC
Confidence 3567888999998776665421 11 3458999999999999975
No 24
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=27.60 E-value=14 Score=23.60 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhhcCCCceEE
Q 034431 34 PTHLARALKKEFDDAYGPAWHC 55 (95)
Q Consensus 34 ~~~iA~~IK~~lD~~yg~~Whc 55 (95)
..+...+|-.-.-..-+|.|||
T Consensus 42 l~at~~fL~~~~r~dg~PiWsr 63 (111)
T 3k6g_A 42 LEATSAFLASGQRADGYPIWSR 63 (111)
T ss_dssp HHHHHHHHHHSSCTTSCCCCCH
T ss_pred HHHHHHHHhCCCcCCCCcceee
Confidence 4444445544433455799987
No 25
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}
Probab=27.43 E-value=1.6e+02 Score=20.71 Aligned_cols=52 Identities=8% Similarity=0.158 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHHhhhcCCCceEEEE---ccceeeeEEE
Q 034431 3 AHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVV---GKSFGSFVTH 67 (95)
Q Consensus 3 ~emq~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~lD~~yg~~WhcIV---G~~Fgs~vth 67 (95)
++.+..++++++.|-..- +...+...|++-++. ....|=..+ |..++|++.+
T Consensus 65 ~~~r~~lV~m~~~A~~~l------------~l~~l~~ei~~ll~~-~~~~~LAT~~~~G~P~~S~v~f 119 (259)
T 3gas_A 65 KDYKNATIELCQSVEKTH------------DLKGVEEEVKAFKEG-FDSVCLATLHPNGHVVCSYAPL 119 (259)
T ss_dssp GGHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHT-CSEEEEEEECTTSCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhc------------ChhhHHHHHHHHHHh-CCEEEEEeeCcCCCEEEEEEEE
Confidence 578889999999998762 378899999999885 466777777 4457766554
No 26
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=27.18 E-value=53 Score=18.87 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhcCCCceEEEEc
Q 034431 35 THLARALKKEFDDAYGPAWHCVVG 58 (95)
Q Consensus 35 ~~iA~~IK~~lD~~yg~~WhcIVG 58 (95)
.+++..|++.|-++|+.. ||.|-
T Consensus 60 h~i~~~ie~~l~~~~~~~-~vtIh 82 (94)
T 3byp_A 60 HRLCDELERALAQAFPGL-QATIH 82 (94)
T ss_dssp HHHHHHHHHHHHHHSTTE-EEEEE
T ss_pred HHHHHHHHHHHHHHCCCC-EEEEE
Confidence 468899999999999887 99883
No 27
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=26.94 E-value=60 Score=21.48 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEccceeee
Q 034431 34 PTHLARALKKEFDDAYGPAWHCVVGKSFGSF 64 (95)
Q Consensus 34 ~~~iA~~IK~~lD~~yg~~WhcIVG~~Fgs~ 64 (95)
-.+.|+.|.+..+.- +.-.-|||+++|-.
T Consensus 81 S~~fA~~l~~~~~~g--~~i~FvIGG~~Gl~ 109 (155)
T 1ns5_A 81 TPQLAAELERWKLDG--RDVSLLIGGPEGLS 109 (155)
T ss_dssp HHHHHHHHHHHHHHC--SCEEEEECBTTBCC
T ss_pred HHHHHHHHHHHHhcC--CeEEEEEECCCCCC
Confidence 468999999888764 55666779998843
No 28
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=26.78 E-value=26 Score=23.90 Aligned_cols=31 Identities=32% Similarity=0.350 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhh----hcCCCceEEEEccceeee
Q 034431 34 PTHLARALKKEFD----DAYGPAWHCVVGKSFGSF 64 (95)
Q Consensus 34 ~~~iA~~IK~~lD----~~yg~~WhcIVG~~Fgs~ 64 (95)
...+|+++-..+| +++-+.+=+|.|+|||+=
T Consensus 32 ~~~l~~~~f~~~~p~F~~~~~~g~IlVaG~NFG~G 66 (176)
T 3vba_A 32 PEELAQFVMTGADPDFPKKVKPGDIIVGGKNFGCG 66 (176)
T ss_dssp HHHHGGGTTTTTCTTHHHHCCTTCEEEECTTBTBS
T ss_pred HHHHHHhhCcCCCccHHHhcCCCCEEEeCCCccCC
Confidence 4455555444433 345566655559999974
No 29
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=26.25 E-value=30 Score=21.01 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHH---hhh-cCC
Q 034431 1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKE---FDD-AYG 50 (95)
Q Consensus 1 M~~emq~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~---lD~-~yg 50 (95)
||-.....++++.++|++...+| .+...+..|-++|++. ||. .||
T Consensus 1 ~~~~~d~~l~~ll~~Ai~~~~de-----dGWa~Lg~vG~~i~k~~PdFD~RnYG 49 (92)
T 2kzv_A 1 MPHKEKHPLQDMFTSAIEAVARD-----SGWAELSAVGSYLAKNDPSFDPRNWG 49 (92)
T ss_dssp CCCSCCSSHHHHHHHHHHHHTTT-----TSSCBHHHHHHHHHHHCTTCCTTTTC
T ss_pred CCCcchHHHHHHHHHHHHHhcCC-----CCcEeHHHHHHHHHHhCcCCCccccC
Confidence 34344456778888888876543 2244678999999886 775 455
No 30
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=25.15 E-value=76 Score=21.27 Aligned_cols=30 Identities=23% Similarity=0.209 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEccceeee
Q 034431 34 PTHLARALKKEFDDAYGPAWHCVVGKSFGSF 64 (95)
Q Consensus 34 ~~~iA~~IK~~lD~~yg~~WhcIVG~~Fgs~ 64 (95)
-.+.|+.|.+..+.-. +.-.-|||+++|-.
T Consensus 85 S~~fA~~l~~~~~~G~-~~i~FvIGGa~Gl~ 114 (167)
T 1to0_A 85 SEELADTIDKLATYGK-SKVTFVIGGSLGLS 114 (167)
T ss_dssp HHHHHHHHHHHHTTTC-CEEEEEECCSSCCC
T ss_pred HHHHHHHHHHHHhcCC-ceEEEEEECCCCCC
Confidence 3688999988876522 34556669998853
No 31
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=24.87 E-value=68 Score=21.46 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEccceeee
Q 034431 34 PTHLARALKKEFDDAYGPAWHCVVGKSFGSF 64 (95)
Q Consensus 34 ~~~iA~~IK~~lD~~yg~~WhcIVG~~Fgs~ 64 (95)
-.+.|+.|.+..+.- +.-.-|||+++|-.
T Consensus 80 S~~fA~~l~~~~~~G--~~i~FvIGGa~Gl~ 108 (163)
T 1o6d_A 80 SEEFADFLKDLEMKG--KDITILIGGPYGLN 108 (163)
T ss_dssp HHHHHHHHHHHHHHT--CCEEEEECCTTCCC
T ss_pred HHHHHHHHHHHHhcC--CeEEEEEECCCCCC
Confidence 468999999888764 55667779999854
No 32
>3kyz_A Sensor protein PFES; APC37897.4, the sensor domain of two-component sensor PFES, pseudomonas aeruginosa PA01, structural genomics, PSI-2; 1.50A {Pseudomonas aeruginosa}
Probab=23.20 E-value=1.3e+02 Score=19.33 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHHhhhcCCCceEEEEccc
Q 034431 1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60 (95)
Q Consensus 1 M~~emq~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~lD~~yg~~WhcIVG~~ 60 (95)
.|++.|+.+.+.|.+|=..+..+ +...+++.+++ |-.+ .++|=.||+.+
T Consensus 15 l~~~~q~~L~~~A~~Ae~~~~~g---------~~~~L~~W~~~-l~~~-e~~w~~Vl~~~ 63 (125)
T 3kyz_A 15 LAPADRHYLADYARQAEDAWRRE---------GAAGAERFRKE-LSAK-EDTWVALVGPH 63 (125)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH-HHHH-HTSCEEEECTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHH-HHhh-cCEEEEEecCC
Confidence 36788999999999988876531 24566666643 3333 57899999744
No 33
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=22.57 E-value=65 Score=20.55 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhhcCCCceE
Q 034431 34 PTHLARALKKEFDDAYGPAWH 54 (95)
Q Consensus 34 ~~~iA~~IK~~lD~~yg~~Wh 54 (95)
.+..|+.|.+.|-++|-+.|+
T Consensus 28 v~~F~~~L~~~L~~~y~~HW~ 48 (120)
T 3e9v_A 28 LKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 457789999999999999998
No 34
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=22.32 E-value=78 Score=23.15 Aligned_cols=56 Identities=9% Similarity=0.030 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCC---CCCCCCCHHHHHHHHHHHhhhcCCCceEEEE-ccc
Q 034431 1 MPAHMQQHALRFTRSLVDDYYSESSA---PKTSRPNPTHLARALKKEFDDAYGPAWHCVV-GKS 60 (95)
Q Consensus 1 M~~emq~~~i~~~~~a~~~~~~~~~~---~~~~~~~~~~iA~~IK~~lD~~yg~~WhcIV-G~~ 60 (95)
||++.+..+|+.|++.+.-.. |-+. +.....+..++.+.++..||. +.|.||| ++.
T Consensus 136 l~~~~~~~lI~~a~~~f~Vl~-EvG~K~~~~~~~~~~~~~I~~~~~dLeA---GA~~ViiEaRE 195 (276)
T 1u83_A 136 MTNKEKAAYIADFSDEFLVLS-EVGSKDAELASRQSSEEWLEYIVEDMEA---GAEKVITEARE 195 (276)
T ss_dssp CCHHHHHHHHHHHTTTSEEEE-ECSCCC------CCSTHHHHHHHHHHHH---TEEEEEEC---
T ss_pred CCHHHHHHHHHHHHhhcEEee-eccccCccccCCCCHHHHHHHHHHHHHC---CCcEEEEeeec
Confidence 678888888887766632221 2111 001112457889999999997 8999999 644
No 35
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=27.72 E-value=19 Score=22.48 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=14.4
Q ss_pred cCCCceEEEEccceeeeE
Q 034431 48 AYGPAWHCVVGKSFGSFV 65 (95)
Q Consensus 48 ~yg~~WhcIVG~~Fgs~v 65 (95)
+.|..|.+|+=++|.+.-
T Consensus 58 rnGk~WyvVlyG~Y~s~~ 75 (106)
T 2lfv_A 58 RNGQPWYVLVSGVYASKE 75 (106)
Confidence 468999999977887643
No 36
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=21.91 E-value=37 Score=22.86 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhh----hcCCCceEEEEccceeee
Q 034431 34 PTHLARALKKEFD----DAYGPAWHCVVGKSFGSF 64 (95)
Q Consensus 34 ~~~iA~~IK~~lD----~~yg~~WhcIVG~~Fgs~ 64 (95)
...+|+++-..+| .++.+.|-+|.|++||+=
T Consensus 30 ~~~l~~~~f~~~~p~f~~~~~~~~iivaG~nfG~G 64 (170)
T 2pkp_A 30 PYELASHCMAGIDENFPKKVKEGDVIVAGENFGCG 64 (170)
T ss_dssp HHHHHTTTTTTTCTTHHHHCCTTCEEEECTTBTBS
T ss_pred HHHHHHHhcccCCCchHHhCCCCCEEEecCCCCCC
Confidence 4455555444333 344567766669999963
No 37
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=21.68 E-value=1.3e+02 Score=19.13 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhccCCCCCCCC---CC--CHHHHHHHHHHHhhhcCCC
Q 034431 9 ALRFTRSLVDDYYSESSAPKTS---RP--NPTHLARALKKEFDDAYGP 51 (95)
Q Consensus 9 ~i~~~~~a~~~~~~~~~~~~~~---~~--~~~~iA~~IK~~lD~~yg~ 51 (95)
=+...++|+++++.++.++... +. +.-+.++.+|+.+|+.|++
T Consensus 64 N~k~lq~af~k~gV~k~i~v~kLvkgk~qdnleflqW~k~f~d~n~~~ 111 (123)
T 2qjz_A 64 NFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG 111 (123)
T ss_dssp HHHHHHHHHHHHTCCCCCCHHHHTTCCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHcCCchhHHHHHHHHHHHHHHcCCC
Confidence 3567788999998776665421 11 3458899999999999974
No 38
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=21.55 E-value=2.3e+02 Score=20.30 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHH-HHhhccCCCC--C-CCCCCCHHHHHHHHHHHhhhcCCCceEEEE-ccc
Q 034431 1 MPAHMQQHALRFTRSL-VDDYYSESSA--P-KTSRPNPTHLARALKKEFDDAYGPAWHCVV-GKS 60 (95)
Q Consensus 1 M~~emq~~~i~~~~~a-~~~~~~~~~~--~-~~~~~~~~~iA~~IK~~lD~~yg~~WhcIV-G~~ 60 (95)
||++.+..+|+.+++. +.-.. |-+. + .....+..++.+.+++.||. +.|.||| ++.
T Consensus 111 l~~~~~~~~I~~~~~~G~~v~~-EvG~k~~~~~~~~~~~~~I~~~~~~LeA---GA~~ViiEarE 171 (251)
T 1qwg_A 111 ISLEERNNAIKRAKDNGFMVLT-EVGKKMPDKDKQLTIDDRIKLINFDLDA---GADYVIIEGRE 171 (251)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEE-EECCSSHHHHTTCCHHHHHHHHHHHHHH---TCSEEEECCTT
T ss_pred CCHHHHHHHHHHHHHCCCEEee-eccccCCcccCCCCHHHHHHHHHHHHHC---CCcEEEEeeec
Confidence 6888888888888776 22111 1000 0 00112468899999999997 8999999 653
No 39
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=20.14 E-value=50 Score=23.34 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhh
Q 034431 34 PTHLARALKKEFDD 47 (95)
Q Consensus 34 ~~~iA~~IK~~lD~ 47 (95)
.++||..||+-||.
T Consensus 124 IKeIAsaIKklLDA 137 (213)
T 3ajm_A 124 IKDIASAIKELLDT 137 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 68999999999996
Done!