Query 034433
Match_columns 95
No_of_seqs 103 out of 1091
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 02:49:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 1.4E-38 3.1E-43 207.9 8.6 88 1-93 31-120 (148)
2 COG5078 Ubiquitin-protein liga 100.0 4.3E-38 9.3E-43 208.5 8.1 87 1-92 36-124 (153)
3 KOG0419 Ubiquitin-protein liga 100.0 9.3E-35 2E-39 186.6 7.1 86 1-91 34-121 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 1.9E-34 4.1E-39 191.4 8.4 88 1-93 32-121 (152)
5 PLN00172 ubiquitin conjugating 100.0 6.3E-34 1.4E-38 188.0 8.5 87 1-92 31-119 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 2.8E-33 6E-38 184.1 7.8 93 1-93 36-141 (171)
7 KOG0424 Ubiquitin-protein liga 100.0 6.7E-33 1.5E-37 180.1 8.8 82 1-85 39-121 (158)
8 KOG0418 Ubiquitin-protein liga 100.0 2.1E-32 4.5E-37 184.4 7.7 77 4-85 39-117 (200)
9 PF00179 UQ_con: Ubiquitin-con 100.0 1.4E-31 3E-36 174.7 6.9 87 1-91 28-116 (140)
10 KOG0421 Ubiquitin-protein liga 100.0 7.7E-31 1.7E-35 170.8 6.3 80 1-85 59-139 (175)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 5.3E-29 1.1E-33 162.8 8.2 81 1-85 29-110 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 5.6E-29 1.2E-33 163.3 8.2 82 1-86 29-111 (145)
13 KOG0426 Ubiquitin-protein liga 100.0 1.2E-28 2.6E-33 158.7 8.5 89 1-89 35-132 (165)
14 KOG0416 Ubiquitin-protein liga 99.9 1.9E-27 4.2E-32 158.4 6.9 87 2-93 31-121 (189)
15 KOG0420 Ubiquitin-protein liga 99.9 1.7E-27 3.8E-32 158.7 5.4 86 2-93 61-148 (184)
16 KOG0422 Ubiquitin-protein liga 99.9 2.8E-26 6.1E-31 148.5 7.9 87 1-92 33-121 (153)
17 KOG0427 Ubiquitin conjugating 99.9 4.7E-25 1E-29 141.9 8.1 83 2-89 45-129 (161)
18 KOG0894 Ubiquitin-protein liga 99.9 1.4E-24 2.9E-29 149.4 8.3 80 1-86 35-117 (244)
19 KOG0423 Ubiquitin-protein liga 99.9 9.1E-25 2E-29 146.3 2.9 86 4-94 43-130 (223)
20 KOG0428 Non-canonical ubiquiti 99.8 1.3E-19 2.9E-24 127.1 8.5 88 1-94 40-130 (314)
21 KOG0895 Ubiquitin-conjugating 99.7 2.6E-18 5.6E-23 138.1 6.2 82 4-85 884-970 (1101)
22 KOG0896 Ubiquitin-conjugating 99.5 1.6E-14 3.5E-19 93.2 5.0 82 2-86 40-123 (138)
23 KOG0429 Ubiquitin-conjugating 99.5 3.9E-14 8.5E-19 98.3 6.5 84 1-90 49-137 (258)
24 KOG0895 Ubiquitin-conjugating 99.5 5.6E-14 1.2E-18 113.5 7.3 85 3-87 314-405 (1101)
25 PF14461 Prok-E2_B: Prokaryoti 98.8 1.5E-08 3.2E-13 65.8 6.7 68 16-88 34-108 (133)
26 KOG0897 Predicted ubiquitin-co 98.5 6.4E-08 1.4E-12 61.3 2.9 62 20-85 13-76 (122)
27 PF05743 UEV: UEV domain; Int 98.2 1.9E-06 4E-11 55.3 3.1 68 14-87 42-118 (121)
28 KOG2391 Vacuolar sorting prote 96.9 0.0027 5.8E-08 47.2 5.4 74 7-86 55-137 (365)
29 PF14462 Prok-E2_E: Prokaryoti 95.7 0.087 1.9E-06 34.0 6.8 73 11-85 35-120 (122)
30 PF05773 RWD: RWD domain; Int 94.7 0.058 1.3E-06 32.8 3.8 29 14-42 45-73 (113)
31 PF14457 Prok-E2_A: Prokaryoti 94.7 0.037 8.1E-07 37.2 3.1 60 22-85 57-125 (162)
32 PF08694 UFC1: Ubiquitin-fold 94.4 0.061 1.3E-06 35.7 3.4 52 8-59 55-117 (161)
33 smart00591 RWD domain in RING 93.9 0.26 5.6E-06 29.7 5.5 26 17-42 40-65 (107)
34 KOG3357 Uncharacterized conser 77.6 2.7 5.9E-05 27.6 2.6 51 8-58 58-119 (167)
35 PF14460 Prok-E2_D: Prokaryoti 75.7 2.6 5.6E-05 28.4 2.3 20 40-59 89-111 (175)
36 TIGR03737 PRTRC_B PRTRC system 67.7 5.5 0.00012 28.3 2.5 19 41-59 131-152 (228)
37 cd00421 intradiol_dioxygenase 64.8 9.6 0.00021 24.8 3.1 25 17-41 65-90 (146)
38 cd03457 intradiol_dioxygenase_ 62.9 11 0.00023 25.9 3.1 26 16-41 85-110 (188)
39 PF03366 YEATS: YEATS family; 60.7 33 0.00072 20.4 5.0 41 2-44 3-43 (84)
40 KOG0309 Conserved WD40 repeat- 60.4 20 0.00044 30.1 4.7 24 19-42 467-491 (1081)
41 PF06113 BRE: Brain and reprod 55.9 26 0.00056 26.4 4.3 34 14-47 61-95 (333)
42 cd03459 3,4-PCD Protocatechuat 54.3 19 0.0004 24.0 3.1 25 17-41 72-101 (158)
43 PF09943 DUF2175: Uncharacteri 44.6 24 0.00053 22.0 2.3 21 1-23 1-21 (101)
44 COG3866 PelB Pectate lyase [Ca 44.6 35 0.00076 25.6 3.5 39 2-41 198-240 (345)
45 KOG4018 Uncharacterized conser 44.2 23 0.0005 25.0 2.4 19 19-37 50-68 (215)
46 KOG4445 Uncharacterized conser 42.3 32 0.00068 25.8 3.0 25 18-42 45-69 (368)
47 TIGR02423 protocat_alph protoc 42.1 34 0.00074 23.6 3.0 24 17-40 96-124 (193)
48 cd05845 Ig2_L1-CAM_like Second 41.7 70 0.0015 19.4 4.1 26 15-42 16-41 (95)
49 cd03463 3,4-PCD_alpha Protocat 39.6 40 0.00087 23.1 3.0 24 17-40 92-120 (185)
50 PF11886 DUF3406: Domain of un 33.6 1.7E+02 0.0036 21.5 5.4 70 6-81 170-269 (273)
51 PF02197 RIIa: Regulatory subu 33.3 16 0.00034 18.5 0.2 22 73-94 3-25 (38)
52 PF06113 BRE: Brain and reprod 30.9 60 0.0013 24.5 2.9 24 19-42 307-330 (333)
53 TIGR02439 catechol_proteo cate 30.5 65 0.0014 23.7 3.1 24 17-40 180-221 (285)
54 PF06468 Spond_N: Spondin_N; 29.6 59 0.0013 22.4 2.6 24 19-42 3-33 (196)
55 PF00779 BTK: BTK motif; Inte 29.4 17 0.00036 17.9 -0.1 16 43-58 2-18 (32)
56 KOG1047 Bifunctional leukotrie 28.3 56 0.0012 26.5 2.5 29 13-42 248-279 (613)
57 cd03461 1,2-HQD Hydroxyquinol 27.7 78 0.0017 23.1 3.0 24 17-40 172-213 (277)
58 COG2819 Predicted hydrolase of 26.5 99 0.0021 22.5 3.4 30 12-41 15-46 (264)
59 TIGR02438 catachol_actin catec 26.1 88 0.0019 23.0 3.1 24 17-40 184-225 (281)
60 PF04314 DUF461: Protein of un 25.5 93 0.002 19.1 2.8 27 3-29 78-104 (110)
61 cd03460 1,2-CTD Catechol 1,2 d 25.0 94 0.002 22.8 3.1 25 16-40 175-217 (282)
62 cd03464 3,4-PCD_beta Protocate 23.6 1.1E+02 0.0024 21.6 3.1 24 17-40 122-152 (220)
63 TIGR02465 chlorocat_1_2 chloro 23.4 1.1E+02 0.0024 22.0 3.1 25 16-40 149-191 (246)
64 COG2847 Copper(I)-binding prot 22.9 1.5E+02 0.0031 19.8 3.4 27 3-29 105-131 (151)
65 TIGR02422 protocat_beta protoc 22.3 1.2E+02 0.0026 21.4 3.1 24 17-40 117-147 (220)
66 cd02860 Pullulanase_N_term Pul 21.2 1.7E+02 0.0036 17.2 3.3 21 3-27 49-69 (100)
67 PF01774 UreD: UreD urease acc 20.6 1E+02 0.0022 21.1 2.5 26 4-29 1-26 (209)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-38 Score=207.88 Aligned_cols=88 Identities=33% Similarity=0.658 Sum_probs=84.2
Q ss_pred CEEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCCCCcEEeccCCCCCCCCCCCHHH-HHHHHHH
Q 034433 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYG 79 (95)
Q Consensus 1 ~~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~~G~icl~~l~~~~~~~~W~p~~-i~~il~~ 79 (95)
++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+..|+||+++| +++|+|+. |++||++
T Consensus 31 ~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclDIL-----k~~WsPAl~i~~Vlls 105 (148)
T KOG0417|consen 31 FHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLDIL-----KDQWSPALTISKVLLS 105 (148)
T ss_pred eeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccchHHhh-----hccCChhhHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999 88899999 9999999
Q ss_pred HHHhcC-CCcchhcc
Q 034433 80 SGLAKI-SSLDDMMA 93 (95)
Q Consensus 80 i~~ll~-~~~~~~~~ 93 (95)
|+++|. .+|||+|+
T Consensus 106 I~sLL~~PnpddPL~ 120 (148)
T KOG0417|consen 106 ICSLLSDPNPDDPLV 120 (148)
T ss_pred HHHHhcCCCCCcccc
Confidence 999986 78888774
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-38 Score=208.50 Aligned_cols=87 Identities=44% Similarity=0.739 Sum_probs=82.0
Q ss_pred CEEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCCCCcEEeccCCCCCCCCCCCHHH-HHHHHHH
Q 034433 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYG 79 (95)
Q Consensus 1 ~~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~~G~icl~~l~~~~~~~~W~p~~-i~~il~~ 79 (95)
++|+++|.||++||||||+|++.|.||++||++||+|+|.|+|||||||++|+||+++| .++|+|++ |++||++
T Consensus 36 ~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vCLdIL-----~~~WsP~~~l~sILls 110 (153)
T COG5078 36 FHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDIL-----KDRWSPVYTLETILLS 110 (153)
T ss_pred eeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCChhHHH-----hCCCCccccHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999 89999999 9999999
Q ss_pred HHHhcC-CCcchhc
Q 034433 80 SGLAKI-SSLDDMM 92 (95)
Q Consensus 80 i~~ll~-~~~~~~~ 92 (95)
||++|. .++++++
T Consensus 111 l~slL~~PN~~~Pl 124 (153)
T COG5078 111 LQSLLLSPNPDSPL 124 (153)
T ss_pred HHHHHcCCCCCCCC
Confidence 999986 4555554
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-35 Score=186.59 Aligned_cols=86 Identities=37% Similarity=0.684 Sum_probs=81.1
Q ss_pred CEEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCCCCcEEeccCCCCCCCCCCCHHH-HHHHHHH
Q 034433 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYG 79 (95)
Q Consensus 1 ~~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~~G~icl~~l~~~~~~~~W~p~~-i~~il~~ 79 (95)
|+|+++|.||.+||||||+|++.|+|+++||.+||.|+|++..||||||.+|.+|+++| +.+|+|++ +.+||++
T Consensus 34 M~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iClDiL-----qNrWsp~Ydva~ILts 108 (152)
T KOG0419|consen 34 MEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDIL-----QNRWSPTYDVASILTS 108 (152)
T ss_pred eeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchHHHH-----hcCCCCchhHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999 88999999 9999999
Q ss_pred HHHhcC-CCcchh
Q 034433 80 SGLAKI-SSLDDM 91 (95)
Q Consensus 80 i~~ll~-~~~~~~ 91 (95)
||+||. .+++++
T Consensus 109 iQslL~dPn~~sP 121 (152)
T KOG0419|consen 109 IQSLLNDPNPNSP 121 (152)
T ss_pred HHHHhcCCCCCCc
Confidence 999997 334433
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.9e-34 Score=191.44 Aligned_cols=88 Identities=30% Similarity=0.630 Sum_probs=82.3
Q ss_pred CEEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCCCCcEEeccCCCCCCCCCCCHHH-HHHHHHH
Q 034433 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYG 79 (95)
Q Consensus 1 ~~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~~G~icl~~l~~~~~~~~W~p~~-i~~il~~ 79 (95)
++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+++|.||+++| .++|+|++ |++||++
T Consensus 32 ~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl~iL-----~~~W~p~~ti~~iL~~ 106 (152)
T PTZ00390 32 RHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDIL-----KDKWSPALQIRTVLLS 106 (152)
T ss_pred cEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEECccC-----cccCCCCCcHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999 88999999 9999999
Q ss_pred HHHhcC-CCcchhcc
Q 034433 80 SGLAKI-SSLDDMMA 93 (95)
Q Consensus 80 i~~ll~-~~~~~~~~ 93 (95)
|+++|. .+++++++
T Consensus 107 i~~ll~~P~~~~pln 121 (152)
T PTZ00390 107 IQALLSAPEPDDPLD 121 (152)
T ss_pred HHHHHhCCCCCCchH
Confidence 999986 55666543
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=6.3e-34 Score=188.02 Aligned_cols=87 Identities=30% Similarity=0.645 Sum_probs=81.6
Q ss_pred CEEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCCCCcEEeccCCCCCCCCCCCHHH-HHHHHHH
Q 034433 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYG 79 (95)
Q Consensus 1 ~~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~~G~icl~~l~~~~~~~~W~p~~-i~~il~~ 79 (95)
++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|.||+++| .++|+|++ |++||.+
T Consensus 31 ~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iCl~il-----~~~W~p~~ti~~il~~ 105 (147)
T PLN00172 31 FRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICLDIL-----RDQWSPALTVSKVLLS 105 (147)
T ss_pred heEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEEcccC-----cCCCCCcCcHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999 88999999 9999999
Q ss_pred HHHhcC-CCcchhc
Q 034433 80 SGLAKI-SSLDDMM 92 (95)
Q Consensus 80 i~~ll~-~~~~~~~ 92 (95)
|+++|. .++++++
T Consensus 106 i~~ll~~P~~~~p~ 119 (147)
T PLN00172 106 ISSLLTDPNPDDPL 119 (147)
T ss_pred HHHHHhCCCCCCch
Confidence 999986 4555554
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-33 Score=184.08 Aligned_cols=93 Identities=34% Similarity=0.566 Sum_probs=83.8
Q ss_pred CEEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCCCCcEEeccCCCCCC--------CCCCCHHH
Q 034433 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNV--------SSSCRFVI 72 (95)
Q Consensus 1 ~~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~~G~icl~~l~~~~~--------~~~W~p~~ 72 (95)
++|.+.|.||++|+||||.|+..+.||++||.+||+++|.+++||||||++|++|+++|..... .++|.|.+
T Consensus 36 f~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~ 115 (171)
T KOG0425|consen 36 FEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQ 115 (171)
T ss_pred eEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCcc
Confidence 5899999999999999999999999999999999999999999999999999999999965321 46999999
Q ss_pred -HHHHHHHHHHhcC----CCcchhcc
Q 034433 73 -YFQIMYGSGLAKI----SSLDDMMA 93 (95)
Q Consensus 73 -i~~il~~i~~ll~----~~~~~~~~ 93 (95)
+++||++|.+||. .+|+++.|
T Consensus 116 tvetIllSiIsmL~~PN~~SPANVDA 141 (171)
T KOG0425|consen 116 TVETILLSIISMLNSPNDESPANVDA 141 (171)
T ss_pred chhHhHHHHHHHHcCCCCCCccchHH
Confidence 9999999999997 44555544
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-33 Score=180.09 Aligned_cols=82 Identities=61% Similarity=1.075 Sum_probs=78.1
Q ss_pred CEEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCCCCcEEeccCCCCCCCCCCCHHH-HHHHHHH
Q 034433 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYG 79 (95)
Q Consensus 1 ~~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~~G~icl~~l~~~~~~~~W~p~~-i~~il~~ 79 (95)
+.|+|.|.|++||+||||.|++++.|+++||.+||+++|.++.||||||++|.|||++|+. ..+|+|+. |.+||++
T Consensus 39 ~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVcLsiL~e---~~~W~paitikqiL~g 115 (158)
T KOG0424|consen 39 MNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVCLSILNE---EKDWRPAITIKQILLG 115 (158)
T ss_pred EEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEehhhhcc---ccCCCchhhHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999964 33599999 9999999
Q ss_pred HHHhcC
Q 034433 80 SGLAKI 85 (95)
Q Consensus 80 i~~ll~ 85 (95)
||.||.
T Consensus 116 IqdLL~ 121 (158)
T KOG0424|consen 116 IQDLLD 121 (158)
T ss_pred HHHHhc
Confidence 999997
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-32 Score=184.43 Aligned_cols=77 Identities=34% Similarity=0.607 Sum_probs=74.8
Q ss_pred EEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCC-CCcEEeccCCCCCCCCCCCHHH-HHHHHHHHH
Q 034433 4 ECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNVSSSCRFVI-YFQIMYGSG 81 (95)
Q Consensus 4 ~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~-~G~icl~~l~~~~~~~~W~p~~-i~~il~~i~ 81 (95)
+..|.||+|||||||+|.++|++|++||++||+|+|.|+||||||.+ +|.||+++| +++|++++ ++++|++||
T Consensus 39 kG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDil-----kd~Wa~slTlrtvLislQ 113 (200)
T KOG0418|consen 39 KGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDIL-----KDQWAASLTLRTVLISLQ 113 (200)
T ss_pred eeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhh-----hcccchhhhHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999977 999999999 99999999 999999999
Q ss_pred HhcC
Q 034433 82 LAKI 85 (95)
Q Consensus 82 ~ll~ 85 (95)
++|.
T Consensus 114 alL~ 117 (200)
T KOG0418|consen 114 ALLC 117 (200)
T ss_pred HHHc
Confidence 9997
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.97 E-value=1.4e-31 Score=174.73 Aligned_cols=87 Identities=34% Similarity=0.620 Sum_probs=74.7
Q ss_pred CEEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCCCCcEEeccCCCCCCCCCCCHHH-HHHHHHH
Q 034433 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYG 79 (95)
Q Consensus 1 ~~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~~G~icl~~l~~~~~~~~W~p~~-i~~il~~ 79 (95)
++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+++||||+.+|+||+++|. .+.|+|++ |++||.+
T Consensus 28 ~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~icl~~l~----~~~W~p~~~i~~il~~ 103 (140)
T PF00179_consen 28 FEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRICLDILN----PESWSPSYTIESILLS 103 (140)
T ss_dssp TEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBGHGGGT----TTTC-TTSHHHHHHHH
T ss_pred heEEEEEeccCccceecccccccccccccccccccccccccccccccccccccchhhhhh----cccCCcccccccHHHH
Confidence 589999999999999999999999999999999999999999999999999999999994 45699999 9999999
Q ss_pred HHHhcC-CCcchh
Q 034433 80 SGLAKI-SSLDDM 91 (95)
Q Consensus 80 i~~ll~-~~~~~~ 91 (95)
|+++|. .+++++
T Consensus 104 i~~ll~~p~~~~~ 116 (140)
T PF00179_consen 104 IQSLLSEPNPEDP 116 (140)
T ss_dssp HHHHHHSTCTTST
T ss_pred HHHHHhCCCCCCc
Confidence 999985 334443
No 10
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.7e-31 Score=170.84 Aligned_cols=80 Identities=36% Similarity=0.568 Sum_probs=78.3
Q ss_pred CEEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCCCCcEEeccCCCCCCCCCCCHHH-HHHHHHH
Q 034433 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYG 79 (95)
Q Consensus 1 ~~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~~G~icl~~l~~~~~~~~W~p~~-i~~il~~ 79 (95)
+.|..+|.||++|+|||-.|++.+.||.+||++||.|+|+|+.|||||+-.|.||+++| ++.|+..+ +++||++
T Consensus 59 f~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDIL-----kdKWSa~YdVrTILLS 133 (175)
T KOG0421|consen 59 FKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDIL-----KDKWSAVYDVRTILLS 133 (175)
T ss_pred eEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHH-----HHHHHHHHhHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999 99999999 9999999
Q ss_pred HHHhcC
Q 034433 80 SGLAKI 85 (95)
Q Consensus 80 i~~ll~ 85 (95)
||++|-
T Consensus 134 iQSLLG 139 (175)
T KOG0421|consen 134 IQSLLG 139 (175)
T ss_pred HHHHhC
Confidence 999984
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.96 E-value=5.3e-29 Score=162.77 Aligned_cols=81 Identities=36% Similarity=0.656 Sum_probs=76.8
Q ss_pred CEEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCCCCcEEeccCCCCCCCCCCCHHH-HHHHHHH
Q 034433 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYG 79 (95)
Q Consensus 1 ~~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~~G~icl~~l~~~~~~~~W~p~~-i~~il~~ 79 (95)
++|+++|.||++|+|+||.|+++|.||++||++||+|+|.++++||||+.+|.||++++. .+.|+|++ +++||.+
T Consensus 29 ~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl~~l~----~~~W~p~~~l~~il~~ 104 (141)
T cd00195 29 LEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLSILK----THGWSPAYTLRTVLLS 104 (141)
T ss_pred hEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCchhhcC----CCCcCCcCcHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999994 33599999 9999999
Q ss_pred HHHhcC
Q 034433 80 SGLAKI 85 (95)
Q Consensus 80 i~~ll~ 85 (95)
|+++|.
T Consensus 105 i~~~l~ 110 (141)
T cd00195 105 LQSLLN 110 (141)
T ss_pred HHHHHh
Confidence 999987
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.96 E-value=5.6e-29 Score=163.32 Aligned_cols=82 Identities=38% Similarity=0.661 Sum_probs=77.8
Q ss_pred CEEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCCCCcEEeccCCCCCCCCCCCHHH-HHHHHHH
Q 034433 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYG 79 (95)
Q Consensus 1 ~~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~~G~icl~~l~~~~~~~~W~p~~-i~~il~~ 79 (95)
++|+++|.||++|+|+||.|+++|.||++||++||+|+|.++++||||+++|++|++.+. .++|+|++ +++||.+
T Consensus 29 ~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~icl~~l~----~~~W~p~~~l~~il~~ 104 (145)
T smart00212 29 LEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEICLDILK----QEKWSPATTLETVLLS 104 (145)
T ss_pred heEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEehhhcC----CCCCCCCCcHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999993 28999999 9999999
Q ss_pred HHHhcCC
Q 034433 80 SGLAKIS 86 (95)
Q Consensus 80 i~~ll~~ 86 (95)
|+++|.+
T Consensus 105 i~~~l~~ 111 (145)
T smart00212 105 IQSLLSE 111 (145)
T ss_pred HHHHHhC
Confidence 9999863
No 13
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-28 Score=158.72 Aligned_cols=89 Identities=39% Similarity=0.721 Sum_probs=82.0
Q ss_pred CEEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCCCCcEEeccCCCCCC--------CCCCCHHH
Q 034433 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNV--------SSSCRFVI 72 (95)
Q Consensus 1 ~~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~~G~icl~~l~~~~~--------~~~W~p~~ 72 (95)
|+|.|.|.||++|+|+||.|..++.||.|||.+||+.+|...++|||||+||++|+++|....+ .++|+|.+
T Consensus 35 F~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQ 114 (165)
T KOG0426|consen 35 FEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQ 114 (165)
T ss_pred eeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHH
Confidence 6899999999999999999999999999999999999999999999999999999999965332 47999999
Q ss_pred -HHHHHHHHHHhcCCCcc
Q 034433 73 -YFQIMYGSGLAKISSLD 89 (95)
Q Consensus 73 -i~~il~~i~~ll~~~~~ 89 (95)
++.||+++-+|+..+-+
T Consensus 115 SvEKILLSV~SMLaEPNd 132 (165)
T KOG0426|consen 115 SVEKILLSVVSMLAEPND 132 (165)
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 99999999999975443
No 14
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-27 Score=158.36 Aligned_cols=87 Identities=24% Similarity=0.490 Sum_probs=79.8
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCC-CCcEEeccCCCCCCCCCCCHHH-HHHHHHH
Q 034433 2 IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNVSSSCRFVI-YFQIMYG 79 (95)
Q Consensus 2 ~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~-~G~icl~~l~~~~~~~~W~p~~-i~~il~~ 79 (95)
++++.+.||++||||||++++++.+|++||++.|.|.|+++||||||+. +|.|||+.+ ++.|+|.+ +..|+..
T Consensus 31 ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDVi-----NQtWSp~yDL~NIfet 105 (189)
T KOG0416|consen 31 EFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVI-----NQTWSPLYDLVNIFET 105 (189)
T ss_pred EEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHH-----hhhhhHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999998 999999999 89999999 8888755
Q ss_pred H--HHhcCCCcchhcc
Q 034433 80 S--GLAKISSLDDMMA 93 (95)
Q Consensus 80 i--~~ll~~~~~~~~~ 93 (95)
. |.+.-.||.|+||
T Consensus 106 fLPQLL~YPNp~DPLN 121 (189)
T KOG0416|consen 106 FLPQLLRYPNPSDPLN 121 (189)
T ss_pred HhHHHhcCCCCCCCcc
Confidence 4 4456688988886
No 15
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-27 Score=158.68 Aligned_cols=86 Identities=30% Similarity=0.564 Sum_probs=81.0
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCCCCcEEeccCCCCCCCCCCCHHH-HHHHHHHH
Q 034433 2 IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGS 80 (95)
Q Consensus 2 ~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~~G~icl~~l~~~~~~~~W~p~~-i~~il~~i 80 (95)
+++++|. |+.+.|+||.|+|.+.+|+.||++||+|.|+|++|||||+.+|.|||++| .++|+|+. +.+|+.++
T Consensus 61 ~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnIL-----RedW~P~lnL~sIi~GL 134 (184)
T KOG0420|consen 61 EFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNIL-----REDWRPVLNLNSIIYGL 134 (184)
T ss_pred eEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHH-----HhcCccccchHHHHHHH
Confidence 5778888 99999999999999999999999999999999999999999999999999 89999999 99999999
Q ss_pred HHhcC-CCcchhcc
Q 034433 81 GLAKI-SSLDDMMA 93 (95)
Q Consensus 81 ~~ll~-~~~~~~~~ 93 (95)
+.++. .+++|+|+
T Consensus 135 ~~LF~epn~eDpLN 148 (184)
T KOG0420|consen 135 QFLFLEPNPEDPLN 148 (184)
T ss_pred HHHhccCCCccccc
Confidence 99864 77888876
No 16
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.8e-26 Score=148.54 Aligned_cols=87 Identities=26% Similarity=0.491 Sum_probs=80.4
Q ss_pred CEEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCCCCcEEeccCCCCCCCCCCCHHH-HHHHHHH
Q 034433 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYG 79 (95)
Q Consensus 1 ~~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~~G~icl~~l~~~~~~~~W~p~~-i~~il~~ 79 (95)
+.|++.+. |++-||..|.|++.|.||.+|||+||+|.|.|+|||||||+.|.+|+.+++ .+.|+|++ .++||++
T Consensus 33 l~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvClPiis----~EnWkP~T~teqVlqa 107 (153)
T KOG0422|consen 33 LKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCLPIIS----AENWKPATRTEQVLQA 107 (153)
T ss_pred eeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceeeeeee----cccccCcccHHHHHHH
Confidence 47999999 889999999999999999999999999999999999999999999999997 89999999 9999999
Q ss_pred HHHhcC-CCcchhc
Q 034433 80 SGLAKI-SSLDDMM 92 (95)
Q Consensus 80 i~~ll~-~~~~~~~ 92 (95)
+.+++. .+|++++
T Consensus 108 Li~liN~P~pe~pl 121 (153)
T KOG0422|consen 108 LIALINDPEPEHPL 121 (153)
T ss_pred HHHHhcCCCccccc
Confidence 998876 4555554
No 17
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.7e-25 Score=141.93 Aligned_cols=83 Identities=27% Similarity=0.472 Sum_probs=79.3
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccc-cccccCCCCcEEeccCCCCCCCCCCCHHH-HHHHHHH
Q 034433 2 IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-FHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYG 79 (95)
Q Consensus 2 ~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i-~hpnv~~~G~icl~~l~~~~~~~~W~p~~-i~~il~~ 79 (95)
+|.+-+.|.+||.|+|..|.+.++||+.||++.|+|.|..++ .||+||.||.||+++| .++|+|++ +.+|+++
T Consensus 45 qWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHICL~iL-----~d~WsPAmsv~SvClS 119 (161)
T KOG0427|consen 45 QWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHICLDIL-----YDSWSPAMSVQSVCLS 119 (161)
T ss_pred eeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEEEEee-----cccCCcchhhHHHHHH
Confidence 599999999999999999999999999999999999999876 8999999999999999 89999999 9999999
Q ss_pred HHHhcCCCcc
Q 034433 80 SGLAKISSLD 89 (95)
Q Consensus 80 i~~ll~~~~~ 89 (95)
|.+||.+.++
T Consensus 120 IlSMLSSs~e 129 (161)
T KOG0427|consen 120 ILSMLSSSKE 129 (161)
T ss_pred HHHHHccCcc
Confidence 9999986654
No 18
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-24 Score=149.42 Aligned_cols=80 Identities=28% Similarity=0.436 Sum_probs=75.3
Q ss_pred CEEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeeccc--ccccccCCCCcEEeccCCCCCCCCCCCHHH-HHHHH
Q 034433 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--FFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIM 77 (95)
Q Consensus 1 ~~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~--i~hpnv~~~G~icl~~l~~~~~~~~W~p~~-i~~il 77 (95)
+|||.++.||++|||+||.|+.+|.||++||++||.|+.+|| +|.+| -++||++.+.| .+.|+|++ +++||
T Consensus 35 LEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFktn----tRLCLSiSDfH--PdsWNP~WsVStIL 108 (244)
T KOG0894|consen 35 LEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKTN----TRLCLSISDFH--PDSWNPGWSVSTIL 108 (244)
T ss_pred eeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceecC----ceEEEeccccC--cCcCCCcccHHHHH
Confidence 689999999999999999999999999999999999999987 67766 89999999988 99999999 99999
Q ss_pred HHHHHhcCC
Q 034433 78 YGSGLAKIS 86 (95)
Q Consensus 78 ~~i~~ll~~ 86 (95)
.++.++|.+
T Consensus 109 tGLlSFM~e 117 (244)
T KOG0894|consen 109 TGLLSFMTE 117 (244)
T ss_pred HHHHHHHhc
Confidence 999998874
No 19
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=9.1e-25 Score=146.31 Aligned_cols=86 Identities=27% Similarity=0.506 Sum_probs=80.8
Q ss_pred EEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCCCCcEEeccCCCCCCCCCCCHHH-HHHHHHHHHH
Q 034433 4 ECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGL 82 (95)
Q Consensus 4 ~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~~G~icl~~l~~~~~~~~W~p~~-i~~il~~i~~ 82 (95)
.+.|.||.||||++|.|++.+.+..|||.+||+-+|+|+||||||-.+|.||.+.| ..+|+|+. |+.||+.|++
T Consensus 43 qa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICVNtL-----KkDW~p~LGirHvLltikC 117 (223)
T KOG0423|consen 43 QADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICVNTL-----KKDWNPSLGIRHVLLTIKC 117 (223)
T ss_pred HhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehhhhh-----hcccCcccchhhHhhhhhe
Confidence 35799999999999999999999999999999999999999999999999999999 99999999 9999999999
Q ss_pred hcC-CCcchhccc
Q 034433 83 AKI-SSLDDMMAF 94 (95)
Q Consensus 83 ll~-~~~~~~~~~ 94 (95)
+++ .+|++.+++
T Consensus 118 LLI~PnPESALNE 130 (223)
T KOG0423|consen 118 LLIEPNPESALNE 130 (223)
T ss_pred eeecCChHHHHhH
Confidence 865 888887764
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.3e-19 Score=127.15 Aligned_cols=88 Identities=22% Similarity=0.328 Sum_probs=78.9
Q ss_pred CEEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeeccc--ccccccCCCCcEEeccCCCCCCCCCCCHHH-HHHHH
Q 034433 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--FFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIM 77 (95)
Q Consensus 1 ~~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~--i~hpnv~~~G~icl~~l~~~~~~~~W~p~~-i~~il 77 (95)
|||+.+|+||.||-||||+|+.+|.+|.|||++||.+..+|+ +|-- +-+||+++.+-| .+.|.|+| |++.|
T Consensus 40 FEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE~----nkKiCLSISgyH--PEtWqPSWSiRTAL 113 (314)
T KOG0428|consen 40 FEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFEV----NKKICLSISGYH--PETWQPSWSIRTAL 113 (314)
T ss_pred eeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCceee----CceEEEEecCCC--ccccCcchhHHHHH
Confidence 689999999999999999999999999999999999999886 3333 478999999755 99999999 99999
Q ss_pred HHHHHhcCCCcchhccc
Q 034433 78 YGSGLAKISSLDDMMAF 94 (95)
Q Consensus 78 ~~i~~ll~~~~~~~~~~ 94 (95)
++|..+|-+.|+..+.+
T Consensus 114 lAlIgFmPt~p~GAlGS 130 (314)
T KOG0428|consen 114 LALIGFMPTKPEGALGS 130 (314)
T ss_pred HHHHccccCCCCCcccc
Confidence 99999999888877654
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.6e-18 Score=138.10 Aligned_cols=82 Identities=30% Similarity=0.578 Sum_probs=76.0
Q ss_pred EEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeeccc--ccccccCCCCcEEeccCCCCCC--CCCCCHHH-HHHHHH
Q 034433 4 ECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--FFHPNVYPSGTVCLSILNEDNV--SSSCRFVI-YFQIMY 78 (95)
Q Consensus 4 ~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~--i~hpnv~~~G~icl~~l~~~~~--~~~W~p~~-i~~il~ 78 (95)
.++|.|++||||++|.|.|++.||++||.+||.|...+. +++||+|.+|++|+++|++|-+ .+.|+|+- +.++|.
T Consensus 884 ~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~ 963 (1101)
T KOG0895|consen 884 RAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLV 963 (1101)
T ss_pred HHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcchhHHHHHH
Confidence 357899999999999999999999999999999999974 7999999999999999999865 68999988 999999
Q ss_pred HHHHhcC
Q 034433 79 GSGLAKI 85 (95)
Q Consensus 79 ~i~~ll~ 85 (95)
+||+++.
T Consensus 964 s~q~l~l 970 (1101)
T KOG0895|consen 964 SIQGLVL 970 (1101)
T ss_pred Hhhhhhc
Confidence 9999854
No 22
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.6e-14 Score=93.23 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=72.0
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCC-CCcEEeccCCCCCCCCCCCHHH-HHHHHHH
Q 034433 2 IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNVSSSCRFVI-YFQIMYG 79 (95)
Q Consensus 2 ~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~-~G~icl~~l~~~~~~~~W~p~~-i~~il~~ 79 (95)
+|..+|.||+.|+||+.+|.++|.+.++||..||.|+|.+++-...|+. +|.+.-..++. .++|+-.+ ++.+|.+
T Consensus 40 rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~---L~~W~~~y~~~~vl~~ 116 (138)
T KOG0896|consen 40 RWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITV---LARWQRSYSIKMVLGQ 116 (138)
T ss_pred eeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccch---hhcccccchhhHHHHh
Confidence 5999999999999999999999999999999999999999999999977 67775544432 57899999 9999999
Q ss_pred HHHhcCC
Q 034433 80 SGLAKIS 86 (95)
Q Consensus 80 i~~ll~~ 86 (95)
++.+|++
T Consensus 117 lr~~m~~ 123 (138)
T KOG0896|consen 117 LRKEMMS 123 (138)
T ss_pred hhHHHHH
Confidence 9987654
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.9e-14 Score=98.25 Aligned_cols=84 Identities=23% Similarity=0.391 Sum_probs=74.7
Q ss_pred CEEEEEEcCCCCCCCCCCEEEEEEeCCCCCCC--CCCeeeecccccccccCC-CCcEEeccCCCCCCCCCCCHHH--HHH
Q 034433 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPS--KPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNVSSSCRFVI--YFQ 75 (95)
Q Consensus 1 ~~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~--~pP~v~f~t~i~hpnv~~-~G~icl~~l~~~~~~~~W~p~~--i~~ 75 (95)
|.|-++|.+..| .|.||+|+|+|.+|++||. +-|+|.|.+.++||+|.+ ++.+|++.. ...|+-.. |.+
T Consensus 49 l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~ra-----f~eWRk~ehhiwq 122 (258)
T KOG0429|consen 49 LLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRA-----FPEWRKEEHHIWQ 122 (258)
T ss_pred ceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhh-----hhhhhccccHHHH
Confidence 579999998887 8999999999999999995 579999999999999998 899999877 66698888 999
Q ss_pred HHHHHHHhcCCCcch
Q 034433 76 IMYGSGLAKISSLDD 90 (95)
Q Consensus 76 il~~i~~ll~~~~~~ 90 (95)
+|..+|..+.++..+
T Consensus 123 vL~ylqriF~dpd~s 137 (258)
T KOG0429|consen 123 VLVYLQRIFYDPDVS 137 (258)
T ss_pred HHHHHHHHhcCcccc
Confidence 999999998755433
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=5.6e-14 Score=113.49 Aligned_cols=85 Identities=27% Similarity=0.503 Sum_probs=78.1
Q ss_pred EEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeeccc---ccccccCCCCcEEeccCCCCCC--CCCCCHHH--HHH
Q 034433 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG---FFHPNVYPSGTVCLSILNEDNV--SSSCRFVI--YFQ 75 (95)
Q Consensus 3 W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~---i~hpnv~~~G~icl~~l~~~~~--~~~W~p~~--i~~ 75 (95)
-+++|.||.||||++|.|.|+|.+|..||..||.|.++|. ++.||.|.+|+||+++|.+|-+ .+.|++.. +.+
T Consensus 314 I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~q 393 (1101)
T KOG0895|consen 314 IKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQ 393 (1101)
T ss_pred eeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeeecccccccCCCccccchhh
Confidence 3678999999999999999999999999999999999975 7999999999999999998765 47999995 999
Q ss_pred HHHHHHHhcCCC
Q 034433 76 IMYGSGLAKISS 87 (95)
Q Consensus 76 il~~i~~ll~~~ 87 (95)
+|.+||.++..+
T Consensus 394 vL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 394 VLESIQGLILNE 405 (1101)
T ss_pred hhhhhhhhhccc
Confidence 999999998765
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.83 E-value=1.5e-08 Score=65.81 Aligned_cols=68 Identities=25% Similarity=0.409 Sum_probs=59.3
Q ss_pred CCCEEEEEEeCCCCCCCCCCeeeecccc---cccccCCCCcEEe---ccCCCCCCCCCCCHHH-HHHHHHHHHHhcCCCc
Q 034433 16 EGGYFPLTLYFSEDYPSKPPKCKFPQGF---FHPNVYPSGTVCL---SILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL 88 (95)
Q Consensus 16 eg~~~~~~i~f~~~yP~~pP~v~f~t~i---~hpnv~~~G~icl---~~l~~~~~~~~W~p~~-i~~il~~i~~ll~~~~ 88 (95)
.|+.+.++|.+|++||..||.|....+. +-|||+.+|.+|+ ... .+.|.|.. +..+|.+.+.+|.+.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~-----~D~~~P~~~~~~~l~~a~~lL~~~~ 108 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELV-----LDPWDPEGIIADCLERAIRLLEDGL 108 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcc-----cCccCHHHHHHHHHHHHHHHHHHhh
Confidence 5889999999999999999999988654 6899999999999 555 88999999 9999988888876443
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=6.4e-08 Score=61.26 Aligned_cols=62 Identities=15% Similarity=0.293 Sum_probs=51.6
Q ss_pred EEEEEeCCCCCCCCCCeeeecccccc-cccCCCCcEEeccCCCCCCCCCCCHHH-HHHHHHHHHHhcC
Q 034433 20 FPLTLYFSEDYPSKPPKCKFPQGFFH-PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKI 85 (95)
Q Consensus 20 ~~~~i~f~~~yP~~pP~v~f~t~i~h-pnv~~~G~icl~~l~~~~~~~~W~p~~-i~~il~~i~~ll~ 85 (95)
.-+.+.|+++||+.||.++-+.|+.. --|-.+|.||+.+++ .++|+.++ |+.++.+|-+++.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt----~qgwssay~Ve~vi~qiaatlV 76 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT----KQGWSSAYEVERVIMQIAATLV 76 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc----cccccchhhHHHHHHHHHHHhh
Confidence 34567899999999999988776533 344568999999998 89999999 9999999998875
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.16 E-value=1.9e-06 Score=55.34 Aligned_cols=68 Identities=16% Similarity=0.269 Sum_probs=47.2
Q ss_pred CCCCCEEE--EEEeCCCCCCCCCCeeeeccc-----ccccccCCCCcEEeccCCCCCCCCCCCH-HH-HHHHHHHHHHhc
Q 034433 14 DWEGGYFP--LTLYFSEDYPSKPPKCKFPQG-----FFHPNVYPSGTVCLSILNEDNVSSSCRF-VI-YFQIMYGSGLAK 84 (95)
Q Consensus 14 ~yeg~~~~--~~i~f~~~yP~~pP~v~f~t~-----i~hpnv~~~G~icl~~l~~~~~~~~W~p-~~-i~~il~~i~~ll 84 (95)
.|+|..|. +.|-+|.+||.+||.+...-. .-+.+|+.+|++.+..|+ +|++ .. +..++..++..+
T Consensus 42 ~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~------~W~~~~s~L~~lv~~l~~~F 115 (121)
T PF05743_consen 42 TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ------NWNPPSSNLVDLVQELQAVF 115 (121)
T ss_dssp CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH------T--TTTS-HHHHHHHHHHCC
T ss_pred ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc------cCCCCCCCHHHHHHHHHHHH
Confidence 57788875 667799999999999976521 124499999999998884 4877 44 888888888877
Q ss_pred CCC
Q 034433 85 ISS 87 (95)
Q Consensus 85 ~~~ 87 (95)
..+
T Consensus 116 ~~~ 118 (121)
T PF05743_consen 116 SEE 118 (121)
T ss_dssp CHS
T ss_pred hHc
Confidence 643
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.0027 Score=47.21 Aligned_cols=74 Identities=20% Similarity=0.345 Sum_probs=54.9
Q ss_pred EcCCCCCCCCCCEEE--EEEeCCCCCCCCCCeeeec-cc----ccccccCCCCcEEeccCCCCCCCCCCCHHH--HHHHH
Q 034433 7 IPGKTGTDWEGGYFP--LTLYFSEDYPSKPPKCKFP-QG----FFHPNVYPSGTVCLSILNEDNVSSSCRFVI--YFQIM 77 (95)
Q Consensus 7 i~Gp~~t~yeg~~~~--~~i~f~~~yP~~pP~v~f~-t~----i~hpnv~~~G~icl~~l~~~~~~~~W~p~~--i~~il 77 (95)
+.|---.+|.|..|. +.|-+.+.||..||.+.-. |. --|-+|+.+|.|-|..|. .|.+.- +..++
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh------~W~~pssdLv~Li 128 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH------NWDPPSSDLVGLI 128 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc------cCCCccchHHHHH
Confidence 345555688888776 5667899999999998544 11 138999999999999994 476555 88887
Q ss_pred HHHHHhcCC
Q 034433 78 YGSGLAKIS 86 (95)
Q Consensus 78 ~~i~~ll~~ 86 (95)
..+-+.+..
T Consensus 129 q~l~a~f~~ 137 (365)
T KOG2391|consen 129 QELIAAFSE 137 (365)
T ss_pred HHHHHHhcC
Confidence 777776653
No 29
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.68 E-value=0.087 Score=33.96 Aligned_cols=73 Identities=8% Similarity=0.125 Sum_probs=48.0
Q ss_pred CCCCCCCCEEEEEEeCCCCCCCCCCeeeecccccccccCCCCcE--EeccCCC---------CCCCCCCCHHH--HHHHH
Q 034433 11 TGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTV--CLSILNE---------DNVSSSCRFVI--YFQIM 77 (95)
Q Consensus 11 ~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~hpnv~~~G~i--cl~~l~~---------~~~~~~W~p~~--i~~il 77 (95)
+.+.|....-.+.|.+|+.||..+|...+..|-.... ..|.+ |-+...+ .++...|+|.. |.+.|
T Consensus 35 P~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~P~~D~l~T~l 112 (122)
T PF14462_consen 35 PEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGRTWQRWSRHNNPWRPGVDDLWTHL 112 (122)
T ss_pred CCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCeeeeeecCCCCCCCCCCCcHHHHH
Confidence 3456888889999999999999998877765532211 01112 2221111 12267899988 99998
Q ss_pred HHHHHhcC
Q 034433 78 YGSGLAKI 85 (95)
Q Consensus 78 ~~i~~ll~ 85 (95)
.-|+..|.
T Consensus 113 ~~v~~~L~ 120 (122)
T PF14462_consen 113 ARVEHALA 120 (122)
T ss_pred HHHHHHHh
Confidence 88887764
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=94.73 E-value=0.058 Score=32.81 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=20.5
Q ss_pred CCCCCEEEEEEeCCCCCCCCCCeeeeccc
Q 034433 14 DWEGGYFPLTLYFSEDYPSKPPKCKFPQG 42 (95)
Q Consensus 14 ~yeg~~~~~~i~f~~~yP~~pP~v~f~t~ 42 (95)
.-....+++.+.||++||..+|.|...+.
T Consensus 45 ~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 45 SSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp TTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred cccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 33456889999999999999999876544
No 31
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=94.71 E-value=0.037 Score=37.19 Aligned_cols=60 Identities=18% Similarity=0.072 Sum_probs=44.7
Q ss_pred EEEeCCCCCCCCCCeeeeccccc---ccccCCC-----CcEEeccCCCCCCCCCCCHHH-HHHHHHHHHHhcC
Q 034433 22 LTLYFSEDYPSKPPKCKFPQGFF---HPNVYPS-----GTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKI 85 (95)
Q Consensus 22 ~~i~f~~~yP~~pP~v~f~t~i~---hpnv~~~-----G~icl~~l~~~~~~~~W~p~~-i~~il~~i~~ll~ 85 (95)
+.|.++.+||..+|.|.+..+.| +||++.. ..+|+..-+ -..|.+.. ++.+|..|+.-|.
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~----~~e~~~~~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGP----WSEWRPSWGPEGFLDRLFDWLR 125 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCC----HHHhhhccCHHHHHHHHHHHHH
Confidence 56899999999999887776433 5777765 779997665 45677777 7777777766554
No 32
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=94.40 E-value=0.061 Score=35.66 Aligned_cols=52 Identities=29% Similarity=0.586 Sum_probs=24.7
Q ss_pred cCCCCCCCCCCE----------EEEEEeCCCCCCCCCCeeeecccc-cccccCCCCcEEeccC
Q 034433 8 PGKTGTDWEGGY----------FPLTLYFSEDYPSKPPKCKFPQGF-FHPNVYPSGTVCLSIL 59 (95)
Q Consensus 8 ~Gp~~t~yeg~~----------~~~~i~f~~~yP~~pP~v~f~t~i-~hpnv~~~G~icl~~l 59 (95)
.-+.||-|.|.. |.+.+.+|..||..||.+..-.-- --.-.|..|+||++.-
T Consensus 55 sn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~H 117 (161)
T PF08694_consen 55 SNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDH 117 (161)
T ss_dssp E-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TT
T ss_pred cCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeecc
Confidence 445666666532 446677999999999998765311 1122355799999754
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=93.92 E-value=0.26 Score=29.68 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=21.6
Q ss_pred CCEEEEEEeCCCCCCCCCCeeeeccc
Q 034433 17 GGYFPLTLYFSEDYPSKPPKCKFPQG 42 (95)
Q Consensus 17 g~~~~~~i~f~~~yP~~pP~v~f~t~ 42 (95)
.....+.+.+|++||..+|.+...+.
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 34588999999999999999887653
No 34
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.60 E-value=2.7 Score=27.60 Aligned_cols=51 Identities=27% Similarity=0.576 Sum_probs=32.4
Q ss_pred cCCCCCCCCCC----------EEEEEEeCCCCCCCCCCeeeecccc-cccccCCCCcEEecc
Q 034433 8 PGKTGTDWEGG----------YFPLTLYFSEDYPSKPPKCKFPQGF-FHPNVYPSGTVCLSI 58 (95)
Q Consensus 8 ~Gp~~t~yeg~----------~~~~~i~f~~~yP~~pP~v~f~t~i-~hpnv~~~G~icl~~ 58 (95)
.-++||-|-|. .|.+.+.+|-.||-.+|.+..-.-- ----.|..|+||+.-
T Consensus 58 sn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmyrggkiclt~ 119 (167)
T KOG3357|consen 58 SNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLTD 119 (167)
T ss_pred cCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhhcCceEeecc
Confidence 45667777664 3456677899999999998643210 001134569999853
No 35
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=75.71 E-value=2.6 Score=28.44 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=15.6
Q ss_pred cccccc---cccCCCCcEEeccC
Q 034433 40 PQGFFH---PNVYPSGTVCLSIL 59 (95)
Q Consensus 40 ~t~i~h---pnv~~~G~icl~~l 59 (95)
.|+.|| +||+.+|+||+-..
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~ 111 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNN 111 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCC
Confidence 356676 69999999999664
No 36
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=67.67 E-value=5.5 Score=28.31 Aligned_cols=19 Identities=21% Similarity=0.567 Sum_probs=14.4
Q ss_pred ccccc---cccCCCCcEEeccC
Q 034433 41 QGFFH---PNVYPSGTVCLSIL 59 (95)
Q Consensus 41 t~i~h---pnv~~~G~icl~~l 59 (95)
|+.|| .||+.+|+||+-..
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~ 152 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNA 152 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCC
Confidence 45666 59999999998544
No 37
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=64.76 E-value=9.6 Score=24.83 Aligned_cols=25 Identities=24% Similarity=0.576 Sum_probs=22.3
Q ss_pred CCEEEEEEeCCCCCC-CCCCeeeecc
Q 034433 17 GGYFPLTLYFSEDYP-SKPPKCKFPQ 41 (95)
Q Consensus 17 g~~~~~~i~f~~~yP-~~pP~v~f~t 41 (95)
.|.|.|.-..|-.|| .+||.|+|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 589999999999999 9999998873
No 38
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=62.93 E-value=11 Score=25.94 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=23.0
Q ss_pred CCCEEEEEEeCCCCCCCCCCeeeecc
Q 034433 16 EGGYFPLTLYFSEDYPSKPPKCKFPQ 41 (95)
Q Consensus 16 eg~~~~~~i~f~~~yP~~pP~v~f~t 41 (95)
+.|.|.|+-.+|--||.++|.|+|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 35889999999999999999998874
No 39
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=60.67 E-value=33 Score=20.37 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=28.4
Q ss_pred EEEEEEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeeccccc
Q 034433 2 IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF 44 (95)
Q Consensus 2 ~W~~~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~i~ 44 (95)
+|.+-+.|+.+..-..-+=++...+.+.|+. |...+..+.|
T Consensus 3 ~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 3 KWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred EEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 6999999999875556777899999999877 5655555433
No 40
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=60.42 E-value=20 Score=30.15 Aligned_cols=24 Identities=21% Similarity=0.672 Sum_probs=19.7
Q ss_pred EEEEEEeCCCCCCCC-CCeeeeccc
Q 034433 19 YFPLTLYFSEDYPSK-PPKCKFPQG 42 (95)
Q Consensus 19 ~~~~~i~f~~~yP~~-pP~v~f~t~ 42 (95)
..++.+.||.+||.+ +|.++|..+
T Consensus 467 flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 467 FLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred eEEEEEeccccCCCCCCCceEEecC
Confidence 357889999999997 699998854
No 41
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=55.94 E-value=26 Score=26.37 Aligned_cols=34 Identities=29% Similarity=0.662 Sum_probs=27.6
Q ss_pred CCCCCEEEEEEeCCCCCCCCCCeeeec-ccccccc
Q 034433 14 DWEGGYFPLTLYFSEDYPSKPPKCKFP-QGFFHPN 47 (95)
Q Consensus 14 ~yeg~~~~~~i~f~~~yP~~pP~v~f~-t~i~hpn 47 (95)
||.|...+=++.|...+|..||.+.|. ..-|+|.
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 567777778889999999999999997 3347774
No 42
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=54.33 E-value=19 Score=24.01 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=22.0
Q ss_pred CCEEEEEEeCCCCCC-----CCCCeeeecc
Q 034433 17 GGYFPLTLYFSEDYP-----SKPPKCKFPQ 41 (95)
Q Consensus 17 g~~~~~~i~f~~~yP-----~~pP~v~f~t 41 (95)
.|.|.|+-.+|--|| .+||.|+|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 588999999999999 8999998874
No 43
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=44.64 E-value=24 Score=21.99 Aligned_cols=21 Identities=43% Similarity=0.866 Sum_probs=17.6
Q ss_pred CEEEEEEcCCCCCCCCCCEEEEE
Q 034433 1 MIWECIIPGKTGTDWEGGYFPLT 23 (95)
Q Consensus 1 ~~W~~~i~Gp~~t~yeg~~~~~~ 23 (95)
.+|+|.|-|-+ .|+|-.|.|.
T Consensus 1 ~kWkC~iCg~~--I~~gqlFTF~ 21 (101)
T PF09943_consen 1 KKWKCYICGKP--IYEGQLFTFT 21 (101)
T ss_pred CceEEEecCCe--eeecceEEEe
Confidence 37999999876 8999999883
No 44
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=44.57 E-value=35 Score=25.64 Aligned_cols=39 Identities=18% Similarity=0.469 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCC-CCCCCEEEEEEe---CCCCCCCCCCeeeecc
Q 034433 2 IWECIIPGKTGT-DWEGGYFPLTLY---FSEDYPSKPPKCKFPQ 41 (95)
Q Consensus 2 ~W~~~i~Gp~~t-~yeg~~~~~~i~---f~~~yP~~pP~v~f~t 41 (95)
+|+..+.|-+++ -|++|.+++++. |..-+ .+.|++||-.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~-qR~PriRfG~ 240 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY-QRGPRIRFGM 240 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEecccccccc-ccCCceEeeE
Confidence 478888997777 888999999887 33333 3456888864
No 45
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=44.16 E-value=23 Score=25.00 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=17.6
Q ss_pred EEEEEEeCCCCCCCCCCee
Q 034433 19 YFPLTLYFSEDYPSKPPKC 37 (95)
Q Consensus 19 ~~~~~i~f~~~yP~~pP~v 37 (95)
.+.+.+.++.+||..+|-+
T Consensus 50 ~~~l~~s~tEnYPDe~Pli 68 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLI 68 (215)
T ss_pred cEEEEEEccCCCCCCCcce
Confidence 6778899999999999998
No 46
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=42.30 E-value=32 Score=25.84 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.3
Q ss_pred CEEEEEEeCCCCCCCCCCeeeeccc
Q 034433 18 GYFPLTLYFSEDYPSKPPKCKFPQG 42 (95)
Q Consensus 18 ~~~~~~i~f~~~yP~~pP~v~f~t~ 42 (95)
-.+.+.+..+.+||...|+|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4566888899999999999998865
No 47
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=42.06 E-value=34 Score=23.56 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=20.4
Q ss_pred CCEEEEEEeCCCCCCC-----CCCeeeec
Q 034433 17 GGYFPLTLYFSEDYPS-----KPPKCKFP 40 (95)
Q Consensus 17 g~~~~~~i~f~~~yP~-----~pP~v~f~ 40 (95)
.|.|.|+-..|-.||. +||.|+|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 5889999999999998 78887765
No 48
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=41.75 E-value=70 Score=19.36 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=20.9
Q ss_pred CCCCEEEEEEeCCCCCCCCCCeeeeccc
Q 034433 15 WEGGYFPLTLYFSEDYPSKPPKCKFPQG 42 (95)
Q Consensus 15 yeg~~~~~~i~f~~~yP~~pP~v~f~t~ 42 (95)
-||.-+.+...-|+.|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 36777888888899999 589988865
No 49
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=39.62 E-value=40 Score=23.06 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=19.4
Q ss_pred CCEEEEEEeCCCCCCC-----CCCeeeec
Q 034433 17 GGYFPLTLYFSEDYPS-----KPPKCKFP 40 (95)
Q Consensus 17 g~~~~~~i~f~~~yP~-----~pP~v~f~ 40 (95)
.|.|.|+-.+|--||. +||.|+|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4889999999999995 77776655
No 50
>PF11886 DUF3406: Domain of unknown function (DUF3406); InterPro: IPR024283 This C-terminal domain is found in chloroplast protein import component Toc86/159 [] and homologue Toc90 [], and in some uncharacterised proteins.
Probab=33.56 E-value=1.7e+02 Score=21.53 Aligned_cols=70 Identities=17% Similarity=0.304 Sum_probs=45.2
Q ss_pred EEcCCCCCCCCCCEEEEEEeCCCCCCCCCCeeeeccc--------------------------ccccccCC--CCcEEec
Q 034433 6 IIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--------------------------FFHPNVYP--SGTVCLS 57 (95)
Q Consensus 6 ~i~Gp~~t~yeg~~~~~~i~f~~~yP~~pP~v~f~t~--------------------------i~hpnv~~--~G~icl~ 57 (95)
.+.|..++-| ||.+..++. ..|||...-...+-.- .-|-|++. +|.||+.
T Consensus 170 ~m~~~gd~AY-Gg~~Ea~lr-~kDyPi~~~~~tlglS~m~w~~d~alg~NlqSqf~~gr~skm~v~anlNnk~~Gqisik 247 (273)
T PF11886_consen 170 AMRGQGDVAY-GGNLEATLR-GKDYPIGQDQSTLGLSLMKWRGDLALGANLQSQFSVGRGSKMAVRANLNNKGTGQISIK 247 (273)
T ss_pred EeeecCceee-ceeEEEEee-cCCCCCCCcceeeeeEeEecccCeEEeecceEeeecCCCceEEEEecccCCccceEEEE
Confidence 4667777778 888888876 4679998766544310 23556654 8999998
Q ss_pred cCCCCCCCCCCCHHH--HHHHHHHHH
Q 034433 58 ILNEDNVSSSCRFVI--YFQIMYGSG 81 (95)
Q Consensus 58 ~l~~~~~~~~W~p~~--i~~il~~i~ 81 (95)
.-+ .|.+.-+. +..|+.+|.
T Consensus 248 ~sS----Se~lqIALi~~vpi~~~l~ 269 (273)
T PF11886_consen 248 TSS----SEQLQIALIGLVPIARSLL 269 (273)
T ss_pred ecc----hHhHHHHHHHHHHHHHHHH
Confidence 775 55555555 555554443
No 51
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=33.26 E-value=16 Score=18.50 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=11.6
Q ss_pred HHHHHHHH-HHhcCCCcchhccc
Q 034433 73 YFQIMYGS-GLAKISSLDDMMAF 94 (95)
Q Consensus 73 i~~il~~i-~~ll~~~~~~~~~~ 94 (95)
+..+|..+ +.++...|+|+++|
T Consensus 3 l~~lL~~~~~~vl~~qP~Di~~F 25 (38)
T PF02197_consen 3 LQELLKEFTREVLREQPDDILQF 25 (38)
T ss_dssp HHHHHHHHHHHHHHH--S-HHHH
T ss_pred HHHHHHHHHHHHHHHCCCcHHHH
Confidence 34555444 44567889998876
No 52
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=30.92 E-value=60 Score=24.46 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=20.0
Q ss_pred EEEEEEeCCCCCCCCCCeeeeccc
Q 034433 19 YFPLTLYFSEDYPSKPPKCKFPQG 42 (95)
Q Consensus 19 ~~~~~i~f~~~yP~~pP~v~f~t~ 42 (95)
.|-+.+.+|..||.+.|.++|.+-
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS~ 330 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQSV 330 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEee
Confidence 355678899999999999998753
No 53
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=30.54 E-value=65 Score=23.65 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=20.5
Q ss_pred CCEEEEEEeCCCCCC------------------CCCCeeeec
Q 034433 17 GGYFPLTLYFSEDYP------------------SKPPKCKFP 40 (95)
Q Consensus 17 g~~~~~~i~f~~~yP------------------~~pP~v~f~ 40 (95)
.|.|.|+-..|.-|| .+||.|+|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 588999999999997 678888776
No 54
>PF06468 Spond_N: Spondin_N; InterPro: IPR009465 This conserved region is found in the N-terminal half of several Spondin proteins []. Spondins are involved in patterning axonal growth trajectory through either inhibiting or promoting adhesion of embryonic nerve cells [].; PDB: 3D34_A 3Q13_A.
Probab=29.61 E-value=59 Score=22.42 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=15.2
Q ss_pred EEEEEEe-------CCCCCCCCCCeeeeccc
Q 034433 19 YFPLTLY-------FSEDYPSKPPKCKFPQG 42 (95)
Q Consensus 19 ~~~~~i~-------f~~~yP~~pP~v~f~t~ 42 (95)
.|++.++ +|++||...|..+|..-
T Consensus 3 ~Y~~~f~g~Ws~~~hpk~yP~~~~~~~fSpl 33 (196)
T PF06468_consen 3 TYEVTFEGIWSRNTHPKDYPSNRPPAHFSPL 33 (196)
T ss_dssp EEEEEEEEE-STTTS-TT--CTSSCSEEEEE
T ss_pred eEEEEEEEEECCccCcccccccccccccchh
Confidence 5666665 89999998777777654
No 55
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=29.44 E-value=17 Score=17.89 Aligned_cols=16 Identities=25% Similarity=0.754 Sum_probs=9.1
Q ss_pred ccccccCCCCc-EEecc
Q 034433 43 FFHPNVYPSGT-VCLSI 58 (95)
Q Consensus 43 i~hpnv~~~G~-icl~~ 58 (95)
.|||.++.+|+ .|-..
T Consensus 2 ~yHPg~~~~g~W~CC~q 18 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCKQ 18 (32)
T ss_dssp EE-SS-EETTCESSSS-
T ss_pred CcCCCcccCCcCcCCCC
Confidence 48999988777 45433
No 56
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=28.30 E-value=56 Score=26.51 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=23.8
Q ss_pred CCCCCCEEEEEEeCCCCCCC---CCCeeeeccc
Q 034433 13 TDWEGGYFPLTLYFSEDYPS---KPPKCKFPQG 42 (95)
Q Consensus 13 t~yeg~~~~~~i~f~~~yP~---~pP~v~f~t~ 42 (95)
+||.=|.|.+ +.+|+.||+ +-|.++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4677788887 567999998 5799999987
No 57
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=27.71 E-value=78 Score=23.15 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=20.5
Q ss_pred CCEEEEEEeCCCCCC------------------CCCCeeeec
Q 034433 17 GGYFPLTLYFSEDYP------------------SKPPKCKFP 40 (95)
Q Consensus 17 g~~~~~~i~f~~~yP------------------~~pP~v~f~ 40 (95)
.|.|.|+-..|.-|| .+||.|+|.
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 689999999999998 478888776
No 58
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=26.50 E-value=99 Score=22.52 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=26.5
Q ss_pred CCCCCCCEEEEEEeCCCCCCCCC--Ceeeecc
Q 034433 12 GTDWEGGYFPLTLYFSEDYPSKP--PKCKFPQ 41 (95)
Q Consensus 12 ~t~yeg~~~~~~i~f~~~yP~~p--P~v~f~t 41 (95)
.+.+.|..|++.+..|.+||-.. |.|.++.
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 35788999999999999999988 9998884
No 59
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=26.12 E-value=88 Score=22.96 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=19.7
Q ss_pred CCEEEEEEeCCCCCC------------------CCCCeeeec
Q 034433 17 GGYFPLTLYFSEDYP------------------SKPPKCKFP 40 (95)
Q Consensus 17 g~~~~~~i~f~~~yP------------------~~pP~v~f~ 40 (95)
.|.|.|+-..|..|| .+||.|+|.
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 588999999998887 578888776
No 60
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=25.51 E-value=93 Score=19.05 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCCCCCCEEEEEEeCCCC
Q 034433 3 WECIIPGKTGTDWEGGYFPLTLYFSED 29 (95)
Q Consensus 3 W~~~i~Gp~~t~yeg~~~~~~i~f~~~ 29 (95)
.|+.+.|++..+=+|..+.++|.|-+.
T Consensus 78 ~HlmL~g~~~~l~~G~~v~ltL~f~~g 104 (110)
T PF04314_consen 78 YHLMLMGLKRPLKPGDTVPLTLTFEDG 104 (110)
T ss_dssp CEEEEECESS-B-TTEEEEEEEEETTT
T ss_pred EEEEEeCCcccCCCCCEEEEEEEECCC
Confidence 478888988888899999999988754
No 61
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=24.99 E-value=94 Score=22.80 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=20.3
Q ss_pred CCCEEEEEEeCCCCCC------------------CCCCeeeec
Q 034433 16 EGGYFPLTLYFSEDYP------------------SKPPKCKFP 40 (95)
Q Consensus 16 eg~~~~~~i~f~~~yP------------------~~pP~v~f~ 40 (95)
+.|.|.|+-..|.-|| .+||.|+|.
T Consensus 175 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 175 ADGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 3688999999999996 567887776
No 62
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=23.57 E-value=1.1e+02 Score=21.60 Aligned_cols=24 Identities=25% Similarity=0.621 Sum_probs=20.3
Q ss_pred CCEEEEEEeCCCCCCC-------CCCeeeec
Q 034433 17 GGYFPLTLYFSEDYPS-------KPPKCKFP 40 (95)
Q Consensus 17 g~~~~~~i~f~~~yP~-------~pP~v~f~ 40 (95)
.|.|.|+-..|--||. +||.|+|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5899999999999964 78888875
No 63
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=23.38 E-value=1.1e+02 Score=21.95 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=19.9
Q ss_pred CCCEEEEEEeCCCCCC------------------CCCCeeeec
Q 034433 16 EGGYFPLTLYFSEDYP------------------SKPPKCKFP 40 (95)
Q Consensus 16 eg~~~~~~i~f~~~yP------------------~~pP~v~f~ 40 (95)
+.|.|.|+-..|.-|| .+||.|+|.
T Consensus 149 ~~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 149 ADGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 3688999999999996 467887776
No 64
>COG2847 Copper(I)-binding protein [Inorganic ion transport and metabolism]
Probab=22.88 E-value=1.5e+02 Score=19.83 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCCCCCCEEEEEEeCCCC
Q 034433 3 WECIIPGKTGTDWEGGYFPLTLYFSED 29 (95)
Q Consensus 3 W~~~i~Gp~~t~yeg~~~~~~i~f~~~ 29 (95)
.|+.+.|++...=||..+.+++.|.+.
T Consensus 105 yHvMlm~lK~pl~eGd~v~vtL~f~~~ 131 (151)
T COG2847 105 YHVMLMGLKKPLKEGDKVPVTLKFEKA 131 (151)
T ss_pred EEEEEeccCCCccCCCEEEEEEEEecC
Confidence 478899999988899999999998765
No 65
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=22.32 E-value=1.2e+02 Score=21.40 Aligned_cols=24 Identities=25% Similarity=0.616 Sum_probs=20.4
Q ss_pred CCEEEEEEeCCCCCCC-------CCCeeeec
Q 034433 17 GGYFPLTLYFSEDYPS-------KPPKCKFP 40 (95)
Q Consensus 17 g~~~~~~i~f~~~yP~-------~pP~v~f~ 40 (95)
.|.|.|+-..|--||. +||.|+|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 6889999999999975 88888775
No 66
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=21.22 E-value=1.7e+02 Score=17.24 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=14.1
Q ss_pred EEEEEcCCCCCCCCCCEEEEEEeCC
Q 034433 3 WECIIPGKTGTDWEGGYFPLTLYFS 27 (95)
Q Consensus 3 W~~~i~Gp~~t~yeg~~~~~~i~f~ 27 (95)
|++.+.|. .+|..|.++|.-+
T Consensus 49 w~~~v~~~----~~g~~Y~y~i~~~ 69 (100)
T cd02860 49 WSVTLDGD----LEGYYYLYEVKVY 69 (100)
T ss_pred EEEEeCCc----cCCcEEEEEEEEe
Confidence 77777653 5677788877654
No 67
>PF01774 UreD: UreD urease accessory protein; InterPro: IPR002669 UreD is a urease accessory protein. Urease IPR005848 from INTERPRO hydrolyses urea into ammonia and carbamic acid []. UreD is involved in activation of the urease enzyme via the UreD-UreF-UreG-urease complex [] and is required for urease nickel metallocentre assembly []. See also UreF IPR002639 from INTERPRO, UreG IPR004400 from INTERPRO.; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_D.
Probab=20.57 E-value=1e+02 Score=21.07 Aligned_cols=26 Identities=8% Similarity=0.146 Sum_probs=16.1
Q ss_pred EEEEcCCCCCCCCCCEEEEEEeCCCC
Q 034433 4 ECIIPGKTGTDWEGGYFPLTLYFSED 29 (95)
Q Consensus 4 ~~~i~Gp~~t~yeg~~~~~~i~f~~~ 29 (95)
|+.+..+.++...|..++++|.+.++
T Consensus 1 h~yl~~~~gGl~~GD~l~~~i~v~~g 26 (209)
T PF01774_consen 1 HVYLMNPSGGLLGGDRLRIDITVGPG 26 (209)
T ss_dssp -EEEEE--S-B-TT-EEEEEEEE-TT
T ss_pred CEEEEeCCCcCcCCCEEEEEEEECCC
Confidence 45677799999999999999998765
Done!