BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034435
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis
thaliana GN=NFYB8 PE=2 SV=1
Length = 173
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/76 (80%), Positives = 66/76 (86%), Gaps = 3/76 (3%)
Query: 1 MAAEAPASPGG-GSHESG-EQSPRS-NVREQDRYLPIANISRIMKKALPANGKIAKDAKE 57
MA SPGG GSHESG +QSPRS +VREQDR+LPIANISRIMK+ LPANGKIAKDAKE
Sbjct: 1 MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60
Query: 58 TVQECVSEFISFITSE 73
VQECVSEFISF+TSE
Sbjct: 61 IVQECVSEFISFVTSE 76
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis
thaliana GN=NFYB1 PE=1 SV=2
Length = 141
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 58/71 (81%), Gaps = 5/71 (7%)
Query: 3 AEAPASPGGGSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQEC 62
A+ P+SP G ESG +VREQDRYLPIANISRIMKKALP NGKI KDAK+TVQEC
Sbjct: 2 ADTPSSPAGDGGESG-----GSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQEC 56
Query: 63 VSEFISFITSE 73
VSEFISFITSE
Sbjct: 57 VSEFISFITSE 67
>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis
thaliana GN=NFYB10 PE=2 SV=1
Length = 176
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/57 (85%), Positives = 54/57 (94%), Gaps = 1/57 (1%)
Query: 18 EQSPRS-NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
+QSPRS NVREQDR+LPIANISRIMK+ LP NGKIAKDAKET+QECVSEFISF+TSE
Sbjct: 19 DQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSE 75
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 56/71 (78%), Gaps = 1/71 (1%)
Query: 4 EAPASPGGGSHESGEQSPRSN-VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQEC 62
E A H+ PRS VREQDR+LPIANISRIMKKA+PANGKIAKDAKET+QEC
Sbjct: 10 EGGAGMADAGHDESGSPPRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQEC 69
Query: 63 VSEFISFITSE 73
VSEFISF+TSE
Sbjct: 70 VSEFISFVTSE 80
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/49 (95%), Positives = 49/49 (100%)
Query: 25 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
VREQDR+LPIANISRIMKKA+PANGKIAKDAKETVQECVSEFISFITSE
Sbjct: 29 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSE 77
>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp.
japonica GN=NFYB3 PE=1 SV=2
Length = 185
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/49 (95%), Positives = 49/49 (100%)
Query: 25 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
VREQDR+LPIANISRIMKKA+PANGKIAKDAKETVQECVSEFISFITSE
Sbjct: 36 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSE 84
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis
thaliana GN=NFYB3 PE=2 SV=1
Length = 161
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 54/69 (78%), Gaps = 3/69 (4%)
Query: 5 APASPGGGSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVS 64
A + G H+ G ++ REQDR+LPIAN+SRIMKKALPAN KI+KDAKETVQECVS
Sbjct: 2 ADSDNDSGGHKDG---GNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 58
Query: 65 EFISFITSE 73
EFISFIT E
Sbjct: 59 EFISFITGE 67
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 91.3 bits (225), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/48 (89%), Positives = 45/48 (93%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
REQDRYLPIANI RIMKKALP N K+AKDAKETVQ+CVSEFISFITSE
Sbjct: 47 REQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSE 94
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis
thaliana GN=NFYB2 PE=2 SV=1
Length = 190
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/48 (85%), Positives = 46/48 (95%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
REQDR+LPIAN+SRIMKKALPAN KI+KDAKET+QECVSEFISF+T E
Sbjct: 26 REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGE 73
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis
thaliana GN=NFYB7 PE=2 SV=1
Length = 215
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 55/82 (67%), Gaps = 9/82 (10%)
Query: 1 MAAEAPASPGG--GSHESGEQSPRSNV-------REQDRYLPIANISRIMKKALPANGKI 51
M E+P G G E+ SP S +EQDR+LPIAN+ RIMKK LP NGKI
Sbjct: 1 MTEESPEEDHGSPGVAETNPGSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKI 60
Query: 52 AKDAKETVQECVSEFISFITSE 73
+KDAKETVQECVSEFISF+T E
Sbjct: 61 SKDAKETVQECVSEFISFVTGE 82
>sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus
GN=NFYB PE=2 SV=1
Length = 209
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 54/73 (73%), Gaps = 5/73 (6%)
Query: 3 AEAPASPGGGSHES--GEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQ 60
+A S G H+ G + P REQD YLPIAN++RIMK ++P++GKIAKDAKE VQ
Sbjct: 32 GDAEGSLASGDHDESCGSKDP---YREQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQ 88
Query: 61 ECVSEFISFITSE 73
ECVSEFISFITSE
Sbjct: 89 ECVSEFISFITSE 101
>sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp.
japonica GN=NFYB4 PE=2 SV=2
Length = 143
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 46/48 (95%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
+EQDR+LPIANI RIM++A+P NGKIAKD+KE+VQECVSEFISFITSE
Sbjct: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSE 68
>sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB
PE=2 SV=1
Length = 207
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Query: 14 HESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
HE S S REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSE
Sbjct: 42 HEDTNGSKES-FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSE 100
>sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus
GN=NFYB PE=2 SV=1
Length = 207
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Query: 14 HESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
HE S S REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSE
Sbjct: 42 HEDTNGSKES-FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSE 100
>sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB
PE=1 SV=2
Length = 207
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Query: 14 HESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
HE S S REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSE
Sbjct: 42 HEDTNGSKES-FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSE 100
>sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus
GN=Nfyb PE=1 SV=1
Length = 207
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Query: 14 HESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
HE S S REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSE
Sbjct: 42 HEDTNGSKES-FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSE 100
>sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb
PE=1 SV=1
Length = 207
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Query: 14 HESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
HE S S REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSE
Sbjct: 42 HEDTNGSKES-FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSE 100
>sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus
GN=NFYB PE=2 SV=2
Length = 205
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Query: 14 HESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
HE S S REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSE
Sbjct: 40 HEDTNGSKES-FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSE 98
>sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1
Length = 144
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 49/70 (70%)
Query: 4 EAPASPGGGSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECV 63
E GG + SG S +REQDR+LPI N++R+MK LP + K++KDAKE +QECV
Sbjct: 14 EDTQENGGNASSSGSLQQISTLREQDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECV 73
Query: 64 SEFISFITSE 73
SE ISF+TSE
Sbjct: 74 SELISFVTSE 83
>sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis
thaliana GN=NFYB5 PE=2 SV=1
Length = 160
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 46/59 (77%)
Query: 15 ESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
E +Q V+EQDR LPIAN+ RIMK LPAN K++K+AKET+QECVSEFISF+T E
Sbjct: 39 EDQQQEESMMVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGE 97
>sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana
GN=NFYB9 PE=1 SV=2
Length = 238
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 50/67 (74%), Gaps = 3/67 (4%)
Query: 10 GGGSHESG---EQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEF 66
G G +G +Q P REQD+Y+PIAN+ RIM+K LP++ KI+ DAKET+QECVSE+
Sbjct: 39 GAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEY 98
Query: 67 ISFITSE 73
ISF+T E
Sbjct: 99 ISFVTGE 105
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 44/49 (89%)
Query: 25 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
VREQDR++PIAN+ RIM++ LPA+ KI+ D+KET+QECVSE+ISFIT E
Sbjct: 56 VREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGE 104
>sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=HAP3 PE=3 SV=1
Length = 205
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 41/47 (87%)
Query: 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
EQDR+LPI N++R+MK LPA K++KDAKE +QECVSEFISF+TSE
Sbjct: 22 EQDRWLPINNVARLMKNTLPATTKVSKDAKECMQECVSEFISFVTSE 68
>sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis
thaliana GN=NFYB4 PE=1 SV=1
Length = 139
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 41/47 (87%)
Query: 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
++DR LPIAN+ R+MK+ LP+N KI+K+AK+TVQEC +EFISF+T E
Sbjct: 3 DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCE 49
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
LPIAN++RIMK ALP N KI+K+AK+ VQ+CVSEFISF+T E
Sbjct: 12 LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGE 53
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
Length = 159
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 36/50 (72%)
Query: 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVV 77
+D LP A +++I+K+ LP + ++A+DA++ + EC EFI+ ++SE + V
Sbjct: 12 EDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDV 61
>sp|Q6Z348|NFYB1_ORYSJ Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp.
japonica GN=NFYB1 PE=1 SV=2
Length = 186
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
LP+AN+ R++KK LP KI AK +C EF+ F+ E
Sbjct: 34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDE 75
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVV 77
+ D +P A I++++K+ LP N ++A DA+E V C +EFI I+SE + +
Sbjct: 8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEI 57
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVV 77
+ D +P A I++++K+ LP N ++A DA+E V C +EFI I+SE + +
Sbjct: 8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEI 57
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVV 77
+ D +P A I++++K+ LP N ++A DA+E V C +EFI I+SE + +
Sbjct: 8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEI 57
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVV 77
+ D +P A I++++K+ LP N ++A DA+E V C +EFI I+SE + +
Sbjct: 8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEI 57
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1
Length = 178
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 24 NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
N +E + LP A +S+++K+ LP + K + + ++ + EC EFI I+SE
Sbjct: 5 NDKEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSE 54
>sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1
Length = 183
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVV 77
LP A+I++I+K+ +P ++A +++E + C SEFI I+SE + V
Sbjct: 20 LPRASINKIIKELVPT-VRVANESRELILNCCSEFIHLISSEANEV 64
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3
PE=2 SV=1
Length = 145
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITS 72
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATS 50
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2
SV=1
Length = 145
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITS 72
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATS 50
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2
SV=1
Length = 147
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITS 72
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATS 50
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1
SV=1
Length = 147
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITS 72
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATS 50
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITS 72
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATS 50
>sp|Q5IS52|ACHA2_PANTR Neuronal acetylcholine receptor subunit alpha-2 OS=Pan troglodytes
GN=CHRNA2 PE=2 SV=1
Length = 529
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 12 GSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAK-ETVQECVSEFISFI 70
G SG P++ Q+ L + S M+KAL IA + E V E ++
Sbjct: 440 GHLHSGASGPKAEALLQEGELLL---SPHMQKALEGVHYIADHLRSEDADSSVKEDWKYV 496
Query: 71 TSEYDVVVLFLFIFVCF------FFPSFFCG 95
D + L+LFI VCF F P F G
Sbjct: 497 AMVIDRIFLWLFIIVCFLGTIGLFLPPFLAG 527
>sp|Q15822|ACHA2_HUMAN Neuronal acetylcholine receptor subunit alpha-2 OS=Homo sapiens
GN=CHRNA2 PE=1 SV=2
Length = 529
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 12 GSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAK-ETVQECVSEFISFI 70
G SG P++ Q+ L + S M+KAL IA + E V E ++
Sbjct: 440 GHLHSGASGPKAEALLQEGELLL---SPHMQKALEGVHYIADHLRSEDADSSVKEDWKYV 496
Query: 71 TSEYDVVVLFLFIFVCF------FFPSFFCG 95
D + L+LFI VCF F P F G
Sbjct: 497 AMVIDRIFLWLFIIVCFLGTIGLFLPPFLAG 527
>sp|P25211|NFYB_XENLA Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus
laevis GN=nfyb PE=2 SV=1
Length = 122
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/15 (100%), Positives = 15/15 (100%)
Query: 59 VQECVSEFISFITSE 73
VQECVSEFISFITSE
Sbjct: 1 VQECVSEFISFITSE 15
>sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1
Length = 161
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVV 77
LP A + +++ LP + K+A++ + EC EFI ++SE + +
Sbjct: 12 LPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEI 57
>sp|Q6CHS6|DPB4_YARLI DNA polymerase epsilon subunit D OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB4 PE=3 SV=1
Length = 163
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE--------------- 73
D P + I + K+ LP + I+KDA +Q + F+S++ S
Sbjct: 34 DLLYPKSTIKNLAKETLPDDAIISKDALTAIQRAATLFVSYMASHGNASAEAGGRKKITP 93
Query: 74 YDVVVLFLFIFVCFFFPS 91
DV V + + F PS
Sbjct: 94 QDVFVALKDVDLAQFVPS 111
>sp|Q8NWU6|TYRA_STAAW Prephenate dehydrogenase OS=Staphylococcus aureus (strain MW2)
GN=tyrA PE=4 SV=1
Length = 363
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 9 PGGGSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFIS 68
P GSH+SG + + ++ E Y+ + N P N + A KE + +++FI
Sbjct: 121 PMAGSHKSGVLNAKKHLFENAYYILVYN--------EPRNEQAANTLKELLSPTLAKFIV 172
Query: 69 FITSEYDVV 77
E+D V
Sbjct: 173 TTAEEHDYV 181
>sp|Q6G9J4|TYRA_STAAS Prephenate dehydrogenase OS=Staphylococcus aureus (strain MSSA476)
GN=tyrA PE=4 SV=1
Length = 363
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 9 PGGGSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFIS 68
P GSH+SG + + ++ E Y+ + N P N + A KE + +++FI
Sbjct: 121 PMAGSHKSGVLNAKKHLFENAYYILVYN--------EPRNEQAANTLKELLSPTLAKFIV 172
Query: 69 FITSEYDVV 77
E+D V
Sbjct: 173 TTAEEHDYV 181
>sp|Q6GH39|TYRA_STAAR Prephenate dehydrogenase OS=Staphylococcus aureus (strain MRSA252)
GN=tyrA PE=4 SV=1
Length = 363
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 9 PGGGSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFIS 68
P GSH+SG + + ++ E Y+ + N P N + A KE + +++FI
Sbjct: 121 PMAGSHKSGVLNAKKHLFENAYYILVYN--------EPRNEQAANTLKELLSPTLAKFIV 172
Query: 69 FITSEYDVV 77
E+D V
Sbjct: 173 TTAEEHDYV 181
>sp|Q7A5R7|TYRA_STAAN Prephenate dehydrogenase OS=Staphylococcus aureus (strain N315)
GN=tyrA PE=4 SV=1
Length = 363
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 9 PGGGSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFIS 68
P GSH+SG + + ++ E Y+ + N P N + A KE + +++FI
Sbjct: 121 PMAGSHKSGVLNAKKHLFENAYYILVYN--------EPRNEQAANTLKELLSPTLAKFIV 172
Query: 69 FITSEYDVV 77
E+D V
Sbjct: 173 TTAEEHDYV 181
>sp|Q99UB6|TYRA_STAAM Prephenate dehydrogenase OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=tyrA PE=4 SV=1
Length = 363
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 9 PGGGSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFIS 68
P GSH+SG + + ++ E Y+ + N P N + A KE + +++FI
Sbjct: 121 PMAGSHKSGVLNAKKHLFENAYYILVYN--------EPRNEQAANTLKELLSPTLAKFIV 172
Query: 69 FITSEYDVV 77
E+D V
Sbjct: 173 TTAEEHDYV 181
>sp|Q5HG54|TYRA_STAAC Prephenate dehydrogenase OS=Staphylococcus aureus (strain COL)
GN=tyrA PE=4 SV=1
Length = 363
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 9 PGGGSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFIS 68
P GSH+SG + + ++ E Y+ + N P N + A KE + +++FI
Sbjct: 121 PMAGSHKSGVLNAKKHLFENAYYILVYN--------EPRNEQAANTLKELLSPTLAKFIV 172
Query: 69 FITSEYDVV 77
E+D V
Sbjct: 173 TTAEEHDYV 181
>sp|Q2YXV4|TYRA_STAAB Prephenate dehydrogenase OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=tyrA PE=4 SV=1
Length = 363
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 9 PGGGSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFIS 68
P GSH+SG + + ++ E Y+ + N P N + A KE + +++FI
Sbjct: 121 PMAGSHKSGVLNAKKHLFENAYYILVYN--------EPRNEQAANTLKELLSPTLAKFIV 172
Query: 69 FITSEYDVV 77
E+D V
Sbjct: 173 TTAEEHDYV 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,737,572
Number of Sequences: 539616
Number of extensions: 1157358
Number of successful extensions: 3502
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3443
Number of HSP's gapped (non-prelim): 56
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)