Query 034435
Match_columns 95
No_of_seqs 103 out of 335
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 03:56:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 99.8 4.3E-19 1.5E-23 132.0 7.3 57 24-81 8-64 (179)
2 3b0c_W CENP-W, centromere prot 99.7 4.8E-18 1.6E-22 109.5 6.5 52 29-81 2-53 (76)
3 2byk_B Chrac-14; nucleosome sl 99.7 9.1E-18 3.1E-22 118.2 6.1 56 26-81 4-59 (128)
4 1n1j_A NF-YB; histone-like PAI 99.7 2.2E-17 7.5E-22 109.3 7.2 56 25-80 2-57 (93)
5 1b67_A Protein (histone HMFA); 99.4 1.6E-12 5.6E-17 81.1 6.7 49 31-81 2-50 (68)
6 1f1e_A Histone fold protein; a 99.3 3.5E-12 1.2E-16 92.7 6.6 50 31-81 4-53 (154)
7 1f1e_A Histone fold protein; a 99.2 7.9E-11 2.7E-15 85.5 7.8 57 23-81 74-130 (154)
8 4g92_C HAPE; transcription fac 99.0 1.5E-09 5.1E-14 75.0 7.5 53 28-81 38-90 (119)
9 2byk_A Chrac-16; nucleosome sl 98.9 1.4E-09 4.7E-14 77.7 4.1 55 23-78 11-65 (140)
10 1n1j_B NF-YC; histone-like PAI 98.8 8.6E-09 2.9E-13 68.7 6.3 56 25-81 13-68 (97)
11 3b0c_T CENP-T, centromere prot 98.7 1.4E-08 4.7E-13 69.7 5.6 52 27-80 3-54 (111)
12 1ku5_A HPHA, archaeal histon; 98.7 5.2E-08 1.8E-12 61.1 6.7 48 31-80 6-53 (70)
13 1id3_B Histone H4; nucleosome 98.6 1.4E-07 4.8E-12 63.9 6.5 56 23-80 20-75 (102)
14 2hue_C Histone H4; mini beta s 98.5 3E-07 1E-11 59.9 6.7 55 24-80 3-57 (84)
15 1tzy_D Histone H4-VI; histone- 98.2 3.5E-06 1.2E-10 56.6 6.9 56 23-80 21-76 (103)
16 2yfw_B Histone H4, H4; cell cy 98.1 5.2E-06 1.8E-10 55.9 6.1 56 23-80 21-76 (103)
17 1jfi_A Transcription regulator 97.7 9.5E-05 3.2E-09 49.2 6.4 52 28-80 8-59 (98)
18 4dra_E Centromere protein X; D 97.1 0.0023 8E-08 42.3 7.0 52 29-80 10-62 (84)
19 2hue_B Histone H3; mini beta s 96.9 0.0036 1.2E-07 40.7 7.0 51 29-79 1-54 (77)
20 3b0b_C CENP-X, centromere prot 96.8 0.0068 2.3E-07 39.7 7.1 54 26-79 3-57 (81)
21 2yfv_A Histone H3-like centrom 96.2 0.01 3.5E-07 40.2 5.3 55 25-79 21-81 (100)
22 1tzy_C Histone H3; histone-fol 96.1 0.016 5.4E-07 41.2 6.5 54 26-79 57-113 (136)
23 1h3o_B Transcription initiatio 96.1 0.022 7.6E-07 36.9 6.6 48 31-79 5-52 (76)
24 3r45_A Histone H3-like centrom 96.0 0.013 4.5E-07 42.7 5.7 54 26-79 72-130 (156)
25 3v9r_B MHF2, uncharacterized p 96.0 0.011 3.7E-07 39.8 4.8 48 32-79 2-50 (88)
26 3nqj_A Histone H3-like centrom 95.7 0.028 9.7E-07 36.8 5.8 50 30-79 2-56 (82)
27 3nqu_A Histone H3-like centrom 95.6 0.016 5.5E-07 41.5 4.7 54 26-79 56-114 (140)
28 1taf_B TFIID TBP associated fa 94.7 0.13 4.4E-06 32.7 6.5 47 31-79 6-52 (70)
29 1bh9_B TAFII28; histone fold, 94.6 0.11 3.8E-06 34.2 6.2 49 31-81 16-64 (89)
30 2nqb_D Histone H2B; nucleosome 94.5 0.1 3.5E-06 36.7 6.2 45 35-80 37-81 (123)
31 1tzy_B Histone H2B; histone-fo 94.3 0.12 4.2E-06 36.4 6.2 44 36-80 41-84 (126)
32 2jss_A Chimera of histone H2B. 92.6 0.31 1.1E-05 35.5 6.2 45 35-80 7-51 (192)
33 3v9r_A MHF1, uncharacterized p 92.4 0.51 1.8E-05 31.2 6.5 44 36-79 17-61 (90)
34 2nqb_C Histone H2A; nucleosome 91.3 0.78 2.7E-05 31.5 6.7 52 27-79 19-70 (123)
35 1tzy_A Histone H2A-IV; histone 90.7 0.91 3.1E-05 31.5 6.7 52 27-79 21-72 (129)
36 1f66_C Histone H2A.Z; nucleoso 90.7 0.93 3.2E-05 31.4 6.7 53 27-79 23-75 (128)
37 1id3_C Histone H2A.1; nucleoso 89.7 0.99 3.4E-05 31.4 6.2 53 26-79 20-72 (131)
38 2f8n_K Histone H2A type 1; nuc 89.0 1.3 4.6E-05 31.6 6.6 52 27-79 40-91 (149)
39 2f8n_G Core histone macro-H2A. 88.7 1.8 6E-05 29.7 6.8 52 27-79 18-69 (120)
40 4dra_A Centromere protein S; D 87.5 0.85 2.9E-05 31.5 4.6 44 36-79 32-76 (113)
41 2jss_A Chimera of histone H2B. 85.1 2.5 8.4E-05 30.6 6.2 53 27-79 101-153 (192)
42 3b0b_B CENP-S, centromere prot 84.1 1.6 5.3E-05 29.6 4.5 44 36-79 24-68 (107)
43 3vh5_A CENP-S; histone fold, c 79.1 2.8 9.5E-05 29.9 4.5 44 36-79 24-68 (140)
44 1uxc_A FRUR (1-57), fructose r 71.7 6.3 0.00021 23.6 4.1 35 31-66 11-45 (65)
45 1taf_A TFIID TBP associated fa 70.5 16 0.00056 22.6 6.1 44 35-80 5-48 (68)
46 1bh9_A TAFII18; histone fold, 67.1 6.8 0.00023 22.6 3.4 29 48-76 16-44 (45)
47 2l5a_A Histone H3-like centrom 66.1 7.1 0.00024 29.9 4.2 49 28-76 8-62 (235)
48 1qpz_A PURA, protein (purine n 61.4 9.8 0.00034 27.3 4.1 31 32-66 12-42 (340)
49 1z4h_A TORI, TOR inhibition pr 55.5 5.9 0.0002 23.3 1.7 26 30-55 20-46 (66)
50 2hsg_A Glucose-resistance amyl 53.4 14 0.00048 26.3 3.7 34 32-70 14-47 (332)
51 2ly8_A Budding yeast chaperone 51.2 46 0.0016 22.8 5.9 44 33-76 3-52 (121)
52 3h5t_A Transcriptional regulat 47.1 20 0.00069 25.9 3.8 35 31-70 20-54 (366)
53 3bqp_A Proactivator polypeptid 42.7 48 0.0017 19.2 4.8 46 35-82 26-76 (80)
54 3kjx_A Transcriptional regulat 40.2 24 0.00081 25.3 3.2 31 31-65 21-51 (344)
55 2l8n_A Transcriptional repress 37.1 56 0.0019 19.4 4.1 32 31-66 20-51 (67)
56 4ddj_A Saposin-A, protein A; s 36.7 66 0.0023 19.1 4.4 38 44-82 39-79 (83)
57 3jz0_A Lincosamide nucleotidyl 34.7 41 0.0014 25.6 4.0 42 48-89 154-195 (287)
58 2frh_A SARA, staphylococcal ac 34.5 66 0.0023 20.1 4.4 45 28-72 61-120 (127)
59 3ubd_A Ribosomal protein S6 ki 32.7 42 0.0014 25.0 3.7 31 33-63 231-261 (304)
60 2ly8_A Budding yeast chaperone 31.2 58 0.002 22.3 3.9 31 50-80 64-94 (121)
61 2lu1_A Subtilase; SUB2 inhibit 29.1 6.1 0.00021 28.4 -1.5 43 51-93 42-90 (149)
62 3dbi_A Sugar-binding transcrip 27.0 13 0.00046 26.5 0.0 34 32-70 15-48 (338)
63 2heo_A Z-DNA binding protein 1 26.0 29 0.00098 20.3 1.4 19 29-47 34-52 (67)
64 1nlw_A MAD protein, MAX dimeri 25.5 1E+02 0.0035 19.1 4.0 38 40-77 22-59 (80)
65 1jhg_A Trp operon repressor; c 25.4 40 0.0014 22.2 2.2 29 29-61 67-95 (101)
66 4aw0_A HPDK1, 3-phosphoinositi 24.9 74 0.0025 23.9 3.8 30 34-63 240-269 (311)
67 3e3m_A Transcriptional regulat 24.8 15 0.00053 26.5 0.0 35 31-70 23-57 (355)
68 1nkp_A C-MYC, MYC proto-oncoge 24.2 77 0.0026 20.0 3.3 39 40-78 27-65 (88)
69 1mu5_A Type II DNA topoisomera 24.1 82 0.0028 25.3 4.1 34 43-76 429-462 (471)
70 3ctp_A Periplasmic binding pro 24.0 16 0.00056 26.0 0.0 31 31-65 13-43 (330)
71 3jvd_A Transcriptional regulat 23.6 17 0.00058 26.2 0.0 35 31-70 17-51 (333)
72 4gd5_A Phosphate ABC transport 23.5 45 0.0015 23.6 2.2 22 61-82 252-274 (279)
73 3bil_A Probable LACI-family tr 22.8 18 0.00061 26.2 0.0 36 31-71 19-54 (348)
74 3h5o_A Transcriptional regulat 22.7 18 0.00061 25.8 0.0 35 31-70 15-49 (339)
75 3nso_A Protein S100-A3; EF-han 22.6 1.5E+02 0.0051 18.5 6.2 47 30-76 27-85 (101)
76 1n69_A Saposin B; lipid bindin 22.1 95 0.0033 18.5 3.3 37 44-82 40-77 (81)
77 2fu4_A Ferric uptake regulatio 21.9 45 0.0015 19.4 1.7 14 31-44 49-62 (83)
78 2o20_A Catabolite control prot 21.1 20 0.00069 25.5 0.0 35 31-70 16-50 (332)
79 1jye_A Lactose operon represso 20.2 22 0.00074 25.7 0.0 35 31-70 14-48 (349)
80 2qyp_A Proactivator polypeptid 20.2 1.2E+02 0.004 18.3 3.5 37 44-82 41-79 (91)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.77 E-value=4.3e-19 Score=131.96 Aligned_cols=57 Identities=35% Similarity=0.581 Sum_probs=51.4
Q ss_pred CCCcccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 034435 24 NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLFL 81 (95)
Q Consensus 24 ~~~edD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~~ 81 (95)
...++|+.||+|+|.||||++|| +++|+|||+++|++||+|||+|||++||++|...
T Consensus 8 ~~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~ 64 (179)
T 1jfi_B 8 SGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKS 64 (179)
T ss_dssp ----CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36789999999999999999999 8999999999999999999999999999999764
No 2
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.73 E-value=4.8e-18 Score=109.46 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=48.0
Q ss_pred cccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 034435 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLFL 81 (95)
Q Consensus 29 D~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~~ 81 (95)
...||+|+|.||||+++| +.+||+||+++|++||+|||++|++|||++|...
T Consensus 2 ~~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~ 53 (76)
T 3b0c_W 2 RRTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFEN 53 (76)
T ss_dssp --CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 468999999999999999 6999999999999999999999999999999864
No 3
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.71 E-value=9.1e-18 Score=118.18 Aligned_cols=56 Identities=32% Similarity=0.482 Sum_probs=47.6
Q ss_pred CcccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 034435 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLFL 81 (95)
Q Consensus 26 ~edD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~~ 81 (95)
+++|+.||+|+|.||||+++|++.+||+||+++|++||++||+|||++|+++|...
T Consensus 4 ~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~ 59 (128)
T 2byk_B 4 RIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQ 59 (128)
T ss_dssp -------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999999999999999999999999999864
No 4
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.71 E-value=2.2e-17 Score=109.28 Aligned_cols=56 Identities=71% Similarity=0.969 Sum_probs=49.9
Q ss_pred CCcccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034435 25 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLF 80 (95)
Q Consensus 25 ~~edD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~ 80 (95)
.+++|+.||+|+|.||||+.+|++.+||+||++++++||.+||.+|+++||+.|..
T Consensus 2 ~~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~ 57 (93)
T 1n1j_A 2 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQ 57 (93)
T ss_dssp -----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999975
No 5
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.36 E-value=1.6e-12 Score=81.08 Aligned_cols=49 Identities=31% Similarity=0.374 Sum_probs=46.1
Q ss_pred cChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 034435 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLFL 81 (95)
Q Consensus 31 ~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~~ 81 (95)
.||+++|.||||+. ++.+||+||++++++|+.+||.+|+++||+.|...
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~ 50 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHA 50 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 69999999999999 67999999999999999999999999999998753
No 6
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.31 E-value=3.5e-12 Score=92.68 Aligned_cols=50 Identities=24% Similarity=0.426 Sum_probs=47.9
Q ss_pred cChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 034435 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLFL 81 (95)
Q Consensus 31 ~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~~ 81 (95)
.||+|+|.||||+.||. .+||+||++.+++|+++|+.+|+++|++.|+..
T Consensus 4 ~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha 53 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDAS 53 (154)
T ss_dssp CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 69999999999999998 999999999999999999999999999999753
No 7
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.17 E-value=7.9e-11 Score=85.53 Aligned_cols=57 Identities=12% Similarity=0.044 Sum_probs=52.3
Q ss_pred CCCCcccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 034435 23 SNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLFL 81 (95)
Q Consensus 23 ~~~~edD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~~ 81 (95)
+..+.+|+.||+++|.||||+. ...+||+||++.+++|+.+|+.+|+++|++.|+..
T Consensus 74 ~v~d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha 130 (154)
T 1f1e_A 74 GVEDYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEELGEKAAEYADED 130 (154)
T ss_dssp TSTTCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3467789999999999999999 66899999999999999999999999999999764
No 8
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=98.98 E-value=1.5e-09 Score=75.05 Aligned_cols=53 Identities=23% Similarity=0.207 Sum_probs=48.4
Q ss_pred ccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 034435 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLFL 81 (95)
Q Consensus 28 dD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~~ 81 (95)
.+..||++.|.||||.- |...+||+||..++.+|+.+||.+|+++|++.|+..
T Consensus 38 k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~ 90 (119)
T 4g92_C 38 KIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDN 90 (119)
T ss_dssp SCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35579999999999965 889999999999999999999999999999999754
No 9
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=98.87 E-value=1.4e-09 Score=77.65 Aligned_cols=55 Identities=16% Similarity=0.341 Sum_probs=36.0
Q ss_pred CCCCcccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHH
Q 034435 23 SNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVV 78 (95)
Q Consensus 23 ~~~~edD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic 78 (95)
+.....++.||+|.|.||||.- |...+|+++|..+|.+|+..||.+|+.+|.+.|
T Consensus 11 s~~~~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a 65 (140)
T 2byk_A 11 ERPPTAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEE 65 (140)
T ss_dssp ------------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345577899999999999998 888999999999999999999999999999999
No 10
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.81 E-value=8.6e-09 Score=68.73 Aligned_cols=56 Identities=21% Similarity=0.120 Sum_probs=46.0
Q ss_pred CCcccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 034435 25 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLFL 81 (95)
Q Consensus 25 ~~edD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~~ 81 (95)
....+..||.+.|.||||.. |...+||+||..++.+|+.+||.+|+.+|.+.|+..
T Consensus 13 ~~~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~ 68 (97)
T 1n1j_B 13 KDFRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDN 68 (97)
T ss_dssp -------CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566789999999999998 777899999999999999999999999999998753
No 11
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.74 E-value=1.4e-08 Score=69.74 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=43.0
Q ss_pred cccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034435 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLF 80 (95)
Q Consensus 27 edD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~ 80 (95)
.+|+.||+++|.||+|+. ...+||+|+++.+++|+.+|+..|+.+|+..|+.
T Consensus 3 ~~d~~lP~a~I~Ri~r~~--g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~H 54 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHY--VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQH 54 (111)
T ss_dssp -------CHHHHHHHHHH--HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHC--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999 6789999999999999999999999999999875
No 12
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.69 E-value=5.2e-08 Score=61.10 Aligned_cols=48 Identities=23% Similarity=0.373 Sum_probs=45.0
Q ss_pred cChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034435 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLF 80 (95)
Q Consensus 31 ~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~ 80 (95)
.||+++|.||+|+. ...+||+++.+.+++++.+|+..|+.+|+..|+.
T Consensus 6 ~lp~a~v~Rl~r~~--g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~h 53 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARH 53 (70)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCChHHHHHHHHHc--CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999997 5689999999999999999999999999998864
No 13
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.57 E-value=1.4e-07 Score=63.86 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=48.4
Q ss_pred CCCCcccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034435 23 SNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLF 80 (95)
Q Consensus 23 ~~~~edD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~ 80 (95)
...++....||+++|.||++..-. .+||+|+.+.+++|+.+|+..|+.+|.+.|+.
T Consensus 20 k~~r~~i~~ip~~~I~Rlar~~Gv--~rIS~da~~~l~~~le~fi~~I~~dA~~~a~H 75 (102)
T 1id3_B 20 KILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRAVLKSFLESVIRDSVTYTEH 75 (102)
T ss_dssp ----CCGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888899999999999999854 58999999999999999999999999998874
No 14
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.51 E-value=3e-07 Score=59.89 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=49.6
Q ss_pred CCCcccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034435 24 NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLF 80 (95)
Q Consensus 24 ~~~edD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~ 80 (95)
.+++....||+++|.||++..-. .+||+|+.+.+++|+.+|+..|+.+|...|+.
T Consensus 3 ~~r~~~~~ip~~~I~Riar~~Gv--~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~h 57 (84)
T 2hue_C 3 VLRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEH 57 (84)
T ss_dssp CGGGGCCSSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999999999854 58999999999999999999999999998874
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.23 E-value=3.5e-06 Score=56.61 Aligned_cols=56 Identities=11% Similarity=0.111 Sum_probs=50.9
Q ss_pred CCCCcccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034435 23 SNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLF 80 (95)
Q Consensus 23 ~~~~edD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~ 80 (95)
...++.+..||+++|.||++..-. .+|+.|+.+.+++++.+|+..|..+|.+.|+.
T Consensus 21 k~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~h 76 (103)
T 1tzy_D 21 KVLRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEH 76 (103)
T ss_dssp CCCCCGGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888999999999999965 59999999999999999999999999998874
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.14 E-value=5.2e-06 Score=55.86 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=44.0
Q ss_pred CCCCcccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034435 23 SNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLF 80 (95)
Q Consensus 23 ~~~~edD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~ 80 (95)
...++....||+++|.||++..-. .+|+.|+.+.+++++.+|+..|..+|.+.|+-
T Consensus 21 ~~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~h 76 (103)
T 2yfw_B 21 KILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRNVLKTFLESVIRDAVTYTEH 76 (103)
T ss_dssp ---------CCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888999999999999865 59999999999999999999999999998874
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.71 E-value=9.5e-05 Score=49.24 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=45.9
Q ss_pred ccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034435 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLF 80 (95)
Q Consensus 28 dD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~ 80 (95)
-...||.+-|.||||. -|...+||.||.-++..++-.|+..|+.+|.+.++.
T Consensus 8 ~~~~fPvaRIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~ 59 (98)
T 1jfi_A 8 YNARFPPARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQS 59 (98)
T ss_dssp --CCCCHHHHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCChHHHHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999997 566679999999999999999999999999998864
No 18
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.06 E-value=0.0023 Score=42.34 Aligned_cols=52 Identities=13% Similarity=0.067 Sum_probs=44.4
Q ss_pred cccChhHHHHHHHHhhCC-CCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034435 29 DRYLPIANISRIMKKALP-ANGKIAKDAKETVQECVSEFISFITSEYDVVVLF 80 (95)
Q Consensus 29 D~~LP~A~V~RImKe~LP-~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~ 80 (95)
+..+|..+|.||++...- +++||++||..++.+....|+.=....|.+.++.
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~ 62 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQA 62 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999998886 6799999999999999999998777777776664
No 19
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=96.95 E-value=0.0036 Score=40.73 Aligned_cols=51 Identities=8% Similarity=0.190 Sum_probs=44.2
Q ss_pred cccChhHHHHHHHHhhCC---CCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 29 DRYLPIANISRIMKKALP---ANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 29 D~~LP~A~V~RImKe~LP---~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
++.+|++-.+|++||+.. .+.+++.+|.+++||.+-.|+--+...||..+.
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~ 54 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAI 54 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999943 578999999999999999999888888887653
No 20
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=96.75 E-value=0.0068 Score=39.68 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=42.6
Q ss_pred CcccccChhHHHHHHHHhhCC-CCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 26 REQDRYLPIANISRIMKKALP-ANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 26 ~edD~~LP~A~V~RImKe~LP-~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
.+++..+|..+|.||++.... ..+||++||..++.+....||.=....|.+.++
T Consensus 3 ~~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~ 57 (81)
T 3b0b_C 3 EEREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQ 57 (81)
T ss_dssp ----CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778999999999999997 579999999999999888888766666666554
No 21
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=96.15 E-value=0.01 Score=40.18 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=41.7
Q ss_pred CCcccccChhHHHHHHHHhhCC------CCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 25 VREQDRYLPIANISRIMKKALP------ANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 25 ~~edD~~LP~A~V~RImKe~LP------~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
.+..++.+|++-..|+++|+.. .+.+++.+|.+++||.+-.|+--+-..||..+.
T Consensus 21 Qkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~ 81 (100)
T 2yfv_A 21 QRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLAL 81 (100)
T ss_dssp -------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999983 268999999999999999999888888887653
No 22
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=96.14 E-value=0.016 Score=41.21 Aligned_cols=54 Identities=7% Similarity=0.205 Sum_probs=47.0
Q ss_pred CcccccChhHHHHHHHHhhCC---CCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 26 REQDRYLPIANISRIMKKALP---ANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 26 ~edD~~LP~A~V~RImKe~LP---~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
+..|+.+|++-.+|+++|+.. .+.+++.+|.+++||.+-.|+--+-..||..+.
T Consensus 57 kst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~ 113 (136)
T 1tzy_C 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAI 113 (136)
T ss_dssp HCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999943 578999999999999999999888888887653
No 23
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=96.12 E-value=0.022 Score=36.88 Aligned_cols=48 Identities=15% Similarity=0.301 Sum_probs=43.9
Q ss_pred cChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 31 ~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
-|++.+++.+++++=| +..+..|+.|++.+.|.+||.=+++.|-..|.
T Consensus 5 vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~~V~~~ac~lAK 52 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIESVVTAACQLAR 52 (76)
T ss_dssp SSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999966 58999999999999999999999999988875
No 24
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=96.01 E-value=0.013 Score=42.72 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=45.1
Q ss_pred CcccccChhHHHHHHHHhhCC-----CCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 26 REQDRYLPIANISRIMKKALP-----ANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 26 ~edD~~LP~A~V~RImKe~LP-----~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
+..++.||++-.+|+++|+.- .+.+++.+|.+++||.+-.|+--+-..||..+.
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAi 130 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL 130 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999973 257999999999999999999988888887654
No 25
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.011 Score=39.77 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=40.0
Q ss_pred ChhHHHHHHHHhhCC-CCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 32 LPIANISRIMKKALP-ANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 32 LP~A~V~RImKe~LP-~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
||+.+|+||++...- +++||++||..++++..-.||.=.-..|.+--+
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke 50 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHK 50 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999997775 579999999999999999999766666655443
No 26
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=95.68 E-value=0.028 Score=36.85 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=43.2
Q ss_pred ccChhHHHHHHHHhhCC-----CCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 30 RYLPIANISRIMKKALP-----ANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 30 ~~LP~A~V~RImKe~LP-----~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
+.+|++-.+|++||+-. .+.+++.+|.+++||.+-.|+--+-..||..+.
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAi 56 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL 56 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999972 367999999999999999999888888887553
No 27
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=95.61 E-value=0.016 Score=41.49 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=45.1
Q ss_pred CcccccChhHHHHHHHHhhCC-----CCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 26 REQDRYLPIANISRIMKKALP-----ANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 26 ~edD~~LP~A~V~RImKe~LP-----~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
+..++.+|++-.+|+++|+-- .+.+++.+|.+++||.+-.|+--+-..||..+.
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAi 114 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL 114 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999972 368999999999999999999988888887554
No 28
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=94.72 E-value=0.13 Score=32.70 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=41.6
Q ss_pred cChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 31 ~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
.||+++|.+|.+.+ .-.+++.|+...+.+-+..-+.-|..+|.....
T Consensus 6 ~lp~~~v~~iaes~--Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmr 52 (70)
T 1taf_B 6 SISAESMKVIAESI--GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMN 52 (70)
T ss_dssp CCCHHHHHHHHHHT--TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999987 223899999999999999999999999988764
No 29
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=94.59 E-value=0.11 Score=34.19 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=44.9
Q ss_pred cChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 034435 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLFL 81 (95)
Q Consensus 31 ~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~~ 81 (95)
.||+++|-|+|+..+ +.+++.+...+|.-.+.+||.=|..+|-++.+..
T Consensus 16 ~f~k~~vKrl~~~~~--~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~ 64 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT--GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKW 64 (89)
T ss_dssp CCCHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHc--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999998 4689999999999999999999999999998754
No 30
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=94.52 E-value=0.1 Score=36.73 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=40.6
Q ss_pred HHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034435 35 ANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLF 80 (95)
Q Consensus 35 A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~ 80 (95)
.-|+|++|++=|+ ..||.+|...|...+..+..=|+.||.+++..
T Consensus 37 ~YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~ 81 (123)
T 2nqb_D 37 IYIYTVLKQVHPD-TGISSKAMSIMNSFVNDIFERIAAEASRLAHY 81 (123)
T ss_dssp HHHHHHHHHHCTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4589999999775 89999999999999999999999999998863
No 31
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=94.28 E-value=0.12 Score=36.44 Aligned_cols=44 Identities=16% Similarity=0.300 Sum_probs=40.4
Q ss_pred HHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034435 36 NISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLF 80 (95)
Q Consensus 36 ~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~ 80 (95)
-|+|++|++=|+ ..||.+|...|...+..+..=|+.||.+++..
T Consensus 41 YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~ 84 (126)
T 1tzy_B 41 YVYKVLKQVHPD-TGISSKAMGIMNSFVNDIFERIAGEASRLAHY 84 (126)
T ss_dssp HHHHHHHHHCTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999775 88999999999999999999999999998864
No 32
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=92.56 E-value=0.31 Score=35.46 Aligned_cols=45 Identities=16% Similarity=0.337 Sum_probs=40.5
Q ss_pred HHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034435 35 ANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLF 80 (95)
Q Consensus 35 A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~ 80 (95)
.-|+|++|++-|. ..||++|.+.|...+..+..-|+.||.+++..
T Consensus 7 ~yi~kvLkqv~p~-~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~ 51 (192)
T 2jss_A 7 SYIYKVLKQTHPD-TGISQKSMSILNSFVNDIFERIATEASKLAAY 51 (192)
T ss_dssp HHHHHHHHHHCSS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4599999999874 88999999999999999999999999988753
No 33
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=92.37 E-value=0.51 Score=31.17 Aligned_cols=44 Identities=9% Similarity=0.073 Sum_probs=39.2
Q ss_pred HHHHHHHhhCCCC-ccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 36 NISRIMKKALPAN-GKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 36 ~V~RImKe~LP~~-~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
+|.||..+.++.. +.+|+++...+.+.+-+++.-++.++...++
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~ 61 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFAR 61 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999876 9999999999999999999888888877665
No 34
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=91.29 E-value=0.78 Score=31.55 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=41.9
Q ss_pred cccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 27 edD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
--.+.||.+-|.|+||+.--.. +|+.+|-..+..+.-.+..-|...|-+.|.
T Consensus 19 ragL~fPV~ri~R~Lk~~~~a~-RV~~~A~VyLaAvLEyL~aEIlelAgn~A~ 70 (123)
T 2nqb_C 19 RAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAAR 70 (123)
T ss_dssp HHTCSSCHHHHHHHHHHTTSCS-EECTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeeccHHHHHHHHHcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999984443 999999999988887777777777766654
No 35
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=90.74 E-value=0.91 Score=31.50 Aligned_cols=52 Identities=12% Similarity=0.156 Sum_probs=42.2
Q ss_pred cccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 27 edD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
--.+.||.+-|.|+||+.--.. +|+.+|-..+..+.-.+..-|...|-+.|.
T Consensus 21 ragLqfPV~rI~R~Lk~~~~a~-RVs~~A~VyLaAvLEyL~aEIlelAgn~A~ 72 (129)
T 1tzy_A 21 RAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAAR 72 (129)
T ss_dssp HHTCSSCHHHHHHHHHHTTSSS-EECTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeccHHHHHHHHHcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999974443 999999999988887777777777766654
No 36
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=90.70 E-value=0.93 Score=31.41 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=41.8
Q ss_pred cccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 27 edD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
--.+.||.+-|.|+||+.-....+|+.+|-..+..+.-.+..-|...|-+.+.
T Consensus 23 ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~ 75 (128)
T 1f66_C 23 RAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASK 75 (128)
T ss_dssp HHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999865445999999999888877776777666665554
No 37
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=89.68 E-value=0.99 Score=31.38 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=42.7
Q ss_pred CcccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 26 ~edD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
.--.+.||.+-|.|+||+.--.. +|+.+|-..+..+.-.+..-|...|-+.|.
T Consensus 20 ~ragLqfPV~rI~R~Lk~~~~a~-RVs~~A~VyLaAvLEyL~aEIlelAgn~A~ 72 (131)
T 1id3_C 20 AKAGLTFPVGRVHRLLRRGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAAR 72 (131)
T ss_dssp GGGTCSSCHHHHHHHHHTTCSCS-EECSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCHHHHHHHHHcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45578999999999999974443 999999999988887777777777766654
No 38
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=89.02 E-value=1.3 Score=31.58 Aligned_cols=52 Identities=10% Similarity=0.148 Sum_probs=41.5
Q ss_pred cccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 27 edD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
--.+.||.+-|.|+||+.--.. +|+.+|-..+..+.-.+..-|...|-+.|.
T Consensus 40 ragLqFPVgrI~R~LK~~~~a~-RVs~~A~VyLAAVLEYL~aEILelAgn~A~ 91 (149)
T 2f8n_K 40 RAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAAR 91 (149)
T ss_dssp HHTCSSCHHHHHHHHHHTTSCS-EECTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeeccHHHHHHHHHcccccc-ccCcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999985553 999999999888877777777776666554
No 39
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=88.70 E-value=1.8 Score=29.65 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=41.3
Q ss_pred cccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 27 edD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
--.+.||.+-|.|+||+.=-. -+|+.+|-..+..+.-.+..-|...|-+.+.
T Consensus 18 ragLqfPV~ri~R~Lk~~~~a-~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~ 69 (120)
T 2f8n_G 18 KAGVIFPVGRMLRYIKKGHPK-YRIGVGAPVYMAAVLEYLTAEILELAVNAAR 69 (120)
T ss_dssp HHTCSSCHHHHHHHHHHHSSS-CEECTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccCChHHHHHHHHcCccc-cccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456889999999999998544 4999999999888877777777766665554
No 40
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=87.55 E-value=0.85 Score=31.45 Aligned_cols=44 Identities=5% Similarity=0.076 Sum_probs=37.7
Q ss_pred HHHHHHHhhCCC-CccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 36 NISRIMKKALPA-NGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 36 ~V~RImKe~LP~-~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
+|.||+++.... ++.||+++...+.+.+-+++.-++.++...+.
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAk 76 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFAR 76 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999998643 68899999999999999999888888877664
No 41
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=85.12 E-value=2.5 Score=30.64 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=41.7
Q ss_pred cccccChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 27 edD~~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
...+.+|.+-|.|+||+.--...+|+.+|...+..+.-.+..-|...|.+.+.
T Consensus 101 ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~ 153 (192)
T 2jss_A 101 RAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAK 153 (192)
T ss_dssp HSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999843335899999999888877777777777766554
No 42
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=84.11 E-value=1.6 Score=29.64 Aligned_cols=44 Identities=5% Similarity=0.032 Sum_probs=37.8
Q ss_pred HHHHHHHhhCC-CCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 36 NISRIMKKALP-ANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 36 ~V~RImKe~LP-~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
+|.||+++..- .+.++++++...+.+.+-+|+.-|+.+|...+.
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~ 68 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFAR 68 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899998853 357999999999999999999999988887765
No 43
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=79.12 E-value=2.8 Score=29.90 Aligned_cols=44 Identities=5% Similarity=0.048 Sum_probs=37.6
Q ss_pred HHHHHHHhhCC-CCccccHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034435 36 NISRIMKKALP-ANGKIAKDAKETVQECVSEFISFITSEYDVVVL 79 (95)
Q Consensus 36 ~V~RImKe~LP-~~~kIskdAkeli~eC~sEFI~~vTSeANeic~ 79 (95)
+|.||+++... .++.||+++...+.+.+-+++.-|+.++...+.
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAk 68 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFAR 68 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899998854 478999999999999999999888888877664
No 44
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=71.72 E-value=6.3 Score=23.61 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=27.3
Q ss_pred cChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHH
Q 034435 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEF 66 (95)
Q Consensus 31 ~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEF 66 (95)
.+.++||+|+++.. +....|+.|+++-|.+.+.|+
T Consensus 11 GVS~sTVSrvLng~-~~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 11 GVSRTTASYVINGK-AKQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp TSCHHHHHHHHHTC-TTTTTCTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHcCC-CCCCCCCHHHHHHHHHHHHHh
Confidence 47789999999974 112379999999999987664
No 45
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=70.45 E-value=16 Score=22.60 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=37.4
Q ss_pred HHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034435 35 ANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVVLF 80 (95)
Q Consensus 35 A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic~~ 80 (95)
..|.||+|++ .--+++.++...+.+.+-+++.=|..+|...++-
T Consensus 5 ~~i~~iLk~~--G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~H 48 (68)
T 1taf_A 5 QVIMSILKEL--NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANH 48 (68)
T ss_dssp HHHHHHHHHT--TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588899987 2239999999999999999999999999988763
No 46
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=67.09 E-value=6.8 Score=22.61 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=25.2
Q ss_pred CccccHhHHHHHHHHHHHHHHHHHhHHHH
Q 034435 48 NGKIAKDAKETVQECVSEFISFITSEYDV 76 (95)
Q Consensus 48 ~~kIskdAkeli~eC~sEFI~~vTSeANe 76 (95)
...-..|+..+|.+.+.+||.-+..+|.+
T Consensus 16 ~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 16 DQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566899999999999999999999876
No 47
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=66.10 E-value=7.1 Score=29.89 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=37.2
Q ss_pred ccccChhHHHHHHHHhhCCC------CccccHhHHHHHHHHHHHHHHHHHhHHHH
Q 034435 28 QDRYLPIANISRIMKKALPA------NGKIAKDAKETVQECVSEFISFITSEYDV 76 (95)
Q Consensus 28 dD~~LP~A~V~RImKe~LP~------~~kIskdAkeli~eC~sEFI~~vTSeANe 76 (95)
..+.+|+.--+|+++|+... +.+++.+|..++||++--|+--+-..+|-
T Consensus 8 ~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nL 62 (235)
T 2l5a_A 8 KKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNL 62 (235)
T ss_dssp ---CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 45678888888888888642 68999999999999998888666555553
No 48
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=61.38 E-value=9.8 Score=27.26 Aligned_cols=31 Identities=16% Similarity=0.416 Sum_probs=25.7
Q ss_pred ChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHH
Q 034435 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEF 66 (95)
Q Consensus 32 LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEF 66 (95)
.=++||+|.+++ .-.|+.++|+-|++.+.|-
T Consensus 12 VS~~TVSrvLn~----~~~vs~~tr~rV~~~a~~l 42 (340)
T 1qpz_A 12 VSTTTVSHVINK----TRFVAEETRNAVWAAIKEL 42 (340)
T ss_dssp SCHHHHHHHHHT----CSCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcC----cCCCCHHHHHHHHHHHHHh
Confidence 457999999995 2469999999999988773
No 49
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=55.53 E-value=5.9 Score=23.27 Aligned_cols=26 Identities=23% Similarity=0.125 Sum_probs=20.8
Q ss_pred ccChhHHHHHHHHhh-CCCCccccHhH
Q 034435 30 RYLPIANISRIMKKA-LPANGKIAKDA 55 (95)
Q Consensus 30 ~~LP~A~V~RImKe~-LP~~~kIskdA 55 (95)
+.+.++||+|++++- +|..++|.+-.
T Consensus 20 lgvsrstiy~~~~~g~fP~piklG~~~ 46 (66)
T 1z4h_A 20 TGFGKTFIYDRIKSGDLPKAKVIHGRA 46 (66)
T ss_dssp HSSCHHHHHHHHHHHHCCCSEESSSCE
T ss_pred HCcCHHHHHHHHHCCCCCCCEEeCCCe
Confidence 468999999999875 88878887643
No 50
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=53.43 E-value=14 Score=26.28 Aligned_cols=34 Identities=15% Similarity=0.419 Sum_probs=27.3
Q ss_pred ChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHH
Q 034435 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFI 70 (95)
Q Consensus 32 LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~v 70 (95)
.=++||+|.++.. -.|+.++|+-|.+.+.| +.|.
T Consensus 14 VS~~TVSrvln~~----~~vs~~tr~rV~~aa~~-lgY~ 47 (332)
T 2hsg_A 14 VSMATVSRVVNGN----PNVKPSTRKKVLETIER-LGYR 47 (332)
T ss_dssp SCHHHHHHHHTTC----TTSCHHHHHHHHHHHHH-HTCC
T ss_pred CCHHHHHHHHcCC----CCCCHHHHHHHHHHHHH-HCCC
Confidence 4579999999873 36999999999998887 3444
No 51
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=51.18 E-value=46 Score=22.84 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=30.4
Q ss_pred hhHHHHHHHHhh----CC--CCccccHhHHHHHHHHHHHHHHHHHhHHHH
Q 034435 33 PIANISRIMKKA----LP--ANGKIAKDAKETVQECVSEFISFITSEYDV 76 (95)
Q Consensus 33 P~A~V~RImKe~----LP--~~~kIskdAkeli~eC~sEFI~~vTSeANe 76 (95)
|+.--+|+++|+ .+ .+.+.+.+|..++||++-.|+--+-..+|-
T Consensus 3 ~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nl 52 (121)
T 2ly8_A 3 SKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNL 52 (121)
T ss_dssp SCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444455555554 33 268999999999999998888666555553
No 52
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=47.07 E-value=20 Score=25.86 Aligned_cols=35 Identities=3% Similarity=0.322 Sum_probs=27.6
Q ss_pred cChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHH
Q 034435 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFI 70 (95)
Q Consensus 31 ~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~v 70 (95)
.+=++||+|.++.. -.|+.++|+-|.+.+.| +.|.
T Consensus 20 GVS~~TVSrvLn~~----~~Vs~~tr~rV~~~a~~-lgY~ 54 (366)
T 3h5t_A 20 GISRTTVSNAYNRP----EQLSAELRQRILDTAED-MGYL 54 (366)
T ss_dssp TSCHHHHHHHHHCG----GGSCHHHHHHHHHHHHH-TTC-
T ss_pred CCCHHHHHHHHCCC----CCCCHHHHHHHHHHHHH-hCCC
Confidence 35689999999863 47999999999999887 3443
No 53
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=42.71 E-value=48 Score=19.18 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=35.2
Q ss_pred HHHHHHHHhh---CCCCccccHhHHHHHHHHHHHHHHHHHh--HHHHHHHHHH
Q 034435 35 ANISRIMKKA---LPANGKIAKDAKETVQECVSEFISFITS--EYDVVVLFLF 82 (95)
Q Consensus 35 A~V~RImKe~---LP~~~kIskdAkeli~eC~sEFI~~vTS--eANeic~~~~ 82 (95)
+.|.+.+.+. ||. ..+.+-+.++.+....+|.++.+ ...++|..++
T Consensus 26 ~~I~~~l~~~C~~lp~--~~~~~C~~~v~~y~~~ii~~l~~~~~P~~iC~~l~ 76 (80)
T 3bqp_A 26 QEILAALEKGCSFLPD--PYQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKIG 76 (80)
T ss_dssp HHHHHHHHHHGGGSCG--GGHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCC--ccchhhHHHHHHHHHHHHHHHHHCCCHHHHHhhcC
Confidence 4466666655 776 57899999999999999999854 3778887654
No 54
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=40.22 E-value=24 Score=25.27 Aligned_cols=31 Identities=16% Similarity=0.376 Sum_probs=25.8
Q ss_pred cChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHH
Q 034435 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSE 65 (95)
Q Consensus 31 ~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sE 65 (95)
.+=++||+|.++.. -.|+.++|+-|.+.+.|
T Consensus 21 gVS~~TVSr~Ln~~----~~vs~~tr~rV~~~~~~ 51 (344)
T 3kjx_A 21 GVSEMTVSRVLRNR----GDVSDATRARVLAAAKE 51 (344)
T ss_dssp CCCSHHHHHHHTTC----SCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCC----CCCCHHHHHHHHHHHHH
Confidence 35679999998874 37999999999998776
No 55
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=37.11 E-value=56 Score=19.37 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=26.1
Q ss_pred cChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHH
Q 034435 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEF 66 (95)
Q Consensus 31 ~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEF 66 (95)
.+.++||+|++... -.|+.+.++-|.+.+.|+
T Consensus 20 GVS~sTVSr~ln~~----~~vs~~t~~rV~~~a~~l 51 (67)
T 2l8n_A 20 KVSTATVSRALMNP----DKVSQATRNRVEKAAREV 51 (67)
T ss_dssp TCCHHHHHHTTTCC----CCSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCC----CCCCHHHHHHHHHHHHHh
Confidence 57889999988753 368999999999988774
No 56
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*
Probab=36.66 E-value=66 Score=19.06 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=30.1
Q ss_pred hCCCCccccHhHHHHHHHHHHHHHHHHHhH---HHHHHHHHH
Q 034435 44 ALPANGKIAKDAKETVQECVSEFISFITSE---YDVVVLFLF 82 (95)
Q Consensus 44 ~LP~~~kIskdAkeli~eC~sEFI~~vTSe---ANeic~~~~ 82 (95)
.||.. ..+..-+.++......+|.++.++ ..++|..++
T Consensus 39 ~lp~~-~~~~~C~~~v~~y~~~ii~~l~~~~~~p~~vC~~l~ 79 (83)
T 4ddj_A 39 WLPKP-NMSASCKEIVDSYLPVILDIIKGEMSRPGEVCSALN 79 (83)
T ss_dssp TSCTT-HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTT
T ss_pred hCCCc-hhhHHHHHHHHHHHHHHHHHHHHccCCHHHHHhHcC
Confidence 35542 258899999999999999999864 778998765
No 57
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=34.71 E-value=41 Score=25.59 Aligned_cols=42 Identities=7% Similarity=0.001 Sum_probs=32.1
Q ss_pred CccccHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 034435 48 NGKIAKDAKETVQECVSEFISFITSEYDVVVLFLFIFVCFFF 89 (95)
Q Consensus 48 ~~kIskdAkeli~eC~sEFI~~vTSeANeic~~~~~~~~~~~ 89 (95)
...+.+.+..-.+.||.||.....--|+-+++...++...++
T Consensus 154 ~~~~~~ps~~~f~~~~NeFw~~~~~~a~~l~RgEl~yA~~~l 195 (287)
T 3jz0_A 154 GARPNRLTEENANFLLCNFSNLWLMGINVLKRGEYARSLELL 195 (287)
T ss_dssp TCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 346777888899999999976666667888988877765544
No 58
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=34.47 E-value=66 Score=20.13 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=34.3
Q ss_pred ccccChhHHHHHHHHhhCCCC---------------ccccHhHHHHHHHHHHHHHHHHHh
Q 034435 28 QDRYLPIANISRIMKKALPAN---------------GKIAKDAKETVQECVSEFISFITS 72 (95)
Q Consensus 28 dD~~LP~A~V~RImKe~LP~~---------------~kIskdAkeli~eC~sEFI~~vTS 72 (95)
+.+.+++++|+|+++...-.+ +.++.+.++++.+....+-.++..
T Consensus 61 ~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~~ 120 (127)
T 2frh_A 61 NHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITE 120 (127)
T ss_dssp HHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999998765321 368999999999888887777744
No 59
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=32.68 E-value=42 Score=25.03 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=23.5
Q ss_pred hhHHHHHHHHhhCCCCccccHhHHHHHHHHH
Q 034435 33 PIANISRIMKKALPANGKIAKDAKETVQECV 63 (95)
Q Consensus 33 P~A~V~RImKe~LP~~~kIskdAkeli~eC~ 63 (95)
+...+.+|++..++-.-.+|.+++++|..|-
T Consensus 231 ~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L 261 (304)
T 3ubd_A 231 RKETMTMILKAKLGMPQFLSPEAQSLLRMLF 261 (304)
T ss_dssp HHHHHHHHHHCCCCCCTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCcCCHHHHHHHHHHc
Confidence 3456777777776655679999999999873
No 60
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=31.23 E-value=58 Score=22.28 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=28.3
Q ss_pred cccHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 034435 50 KIAKDAKETVQECVSEFISFITSEYDVVVLF 80 (95)
Q Consensus 50 kIskdAkeli~eC~sEFI~~vTSeANeic~~ 80 (95)
+||.++.+.+.+...+|+.-|..+|...++-
T Consensus 64 RIS~~iy~e~r~vl~~~l~~i~rdav~yaeh 94 (121)
T 2ly8_A 64 RISGLIYEEVRAVLKSFLESVIRDSVTYTEH 94 (121)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999887763
No 61
>2lu1_A Subtilase; SUB2 inhibitor prodomain, hydrolase; NMR {Plasmodium falciparum}
Probab=29.11 E-value=6.1 Score=28.37 Aligned_cols=43 Identities=16% Similarity=0.453 Sum_probs=26.2
Q ss_pred ccHhHHHHHHHHHHHHHHHHHhHHHHHHH------HHHHHHHhhccccc
Q 034435 51 IAKDAKETVQECVSEFISFITSEYDVVVL------FLFIFVCFFFPSFF 93 (95)
Q Consensus 51 IskdAkeli~eC~sEFI~~vTSeANeic~------~~~~~~~~~~~~~~ 93 (95)
=||+-|..|.++-..|-.|+--.=.++-. +---|||||.|-.|
T Consensus 42 HSk~Mk~VI~~an~kf~~yi~~hFk~v~~i~YDiSsPInF~CfFiPtif 90 (149)
T 2lu1_A 42 HSKNMKNVINNAKKNLEKYFKEHFKEFDKISYDISTPINFLCIFIPTLF 90 (149)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSSSCCCCCEEEEETTTTEEEEEEEECC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhheeeecCCCceEEEEeeccee
Confidence 47888888888777777766422111100 01138999999776
No 62
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=27.01 E-value=13 Score=26.45 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHH
Q 034435 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFI 70 (95)
Q Consensus 32 LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~v 70 (95)
+=++||+|.++.. -.|+.++|+-|.+.+.| +.|.
T Consensus 15 VS~~TVSrvln~~----~~vs~~tr~rV~~~a~~-lgY~ 48 (338)
T 3dbi_A 15 VSKATVSRVLSGN----GYVSQETKDRVFQAVEE-SGYR 48 (338)
T ss_dssp ---------------------------------------
T ss_pred cCHHHHHHHHCCC----CCCCHHHHHHHHHHHHH-HCCC
Confidence 4578999998873 37999999999998877 3454
No 63
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=26.04 E-value=29 Score=20.32 Aligned_cols=19 Identities=5% Similarity=0.209 Sum_probs=14.7
Q ss_pred cccChhHHHHHHHHhhCCC
Q 034435 29 DRYLPIANISRIMKKALPA 47 (95)
Q Consensus 29 D~~LP~A~V~RImKe~LP~ 47 (95)
.+.+|+++|.|+|+..--.
T Consensus 34 ~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 34 KCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HHCSCHHHHHHHHHHHHHT
T ss_pred HHCcCHHHHHHHHHHHHHC
Confidence 4579999999999875433
No 64
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=25.48 E-value=1e+02 Score=19.10 Aligned_cols=38 Identities=8% Similarity=0.046 Sum_probs=26.8
Q ss_pred HHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHH
Q 034435 40 IMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVV 77 (95)
Q Consensus 40 ImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANei 77 (95)
-.++.+|....-+|-+|-.|..-|+++|..+..+-.+.
T Consensus 22 ~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l 59 (80)
T 1nlw_A 22 KLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKA 59 (80)
T ss_dssp HHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677885434445556788888999999998776544
No 65
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=25.42 E-value=40 Score=22.21 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=21.5
Q ss_pred cccChhHHHHHHHHhhCCCCccccHhHHHHHHH
Q 034435 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQE 61 (95)
Q Consensus 29 D~~LP~A~V~RImKe~LP~~~kIskdAkeli~e 61 (95)
.+..-+|||+|+ |++| -+..++-|+.+.+
T Consensus 67 ~lGiS~stISRi-~r~L---~~l~~~~k~~l~~ 95 (101)
T 1jhg_A 67 ELGAGIATITRG-SNSL---KAAPVELRQWLEE 95 (101)
T ss_dssp HHCCCHHHHHHH-HHHH---HHSCHHHHHHHHH
T ss_pred HHCCChhhhhHH-HHHH---HHccHHHHHHHHH
Confidence 345668999999 8887 3677887777754
No 66
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=24.90 E-value=74 Score=23.91 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=21.1
Q ss_pred hHHHHHHHHhhCCCCccccHhHHHHHHHHH
Q 034435 34 IANISRIMKKALPANGKIAKDAKETVQECV 63 (95)
Q Consensus 34 ~A~V~RImKe~LP~~~kIskdAkeli~eC~ 63 (95)
.....+|++..++-.-.++.+++++|..|-
T Consensus 240 ~~~~~~i~~~~~~~p~~~s~~~~dli~~lL 269 (311)
T 4aw0_A 240 GLIFAKIIKLEYDFPEKFFPKARDLVEKLL 269 (311)
T ss_dssp HHHHHHHHHTCCCCCTTCCHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCCcccCHHHHHHHHHHc
Confidence 345667777665433478999999998863
No 67
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=24.78 E-value=15 Score=26.45 Aligned_cols=35 Identities=20% Similarity=0.464 Sum_probs=0.0
Q ss_pred cChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHH
Q 034435 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFI 70 (95)
Q Consensus 31 ~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~v 70 (95)
.+=++||+|.++.. -.|+.++|+-|.+.+.| +.|.
T Consensus 23 gVS~~TVSr~Ln~~----~~vs~~tr~rV~~~a~~-lgY~ 57 (355)
T 3e3m_A 23 GVSRMTVSRALKKD----SPISSETRERILKVVKD-MNYV 57 (355)
T ss_dssp ----------------------------------------
T ss_pred CCCHHHHHHHHCCC----CCCCHHHHHHHHHHHHH-hCCC
Confidence 57789999999865 37999999999998776 3444
No 68
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.16 E-value=77 Score=19.97 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=27.1
Q ss_pred HHHhhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHHHH
Q 034435 40 IMKKALPANGKIAKDAKETVQECVSEFISFITSEYDVVV 78 (95)
Q Consensus 40 ImKe~LP~~~kIskdAkeli~eC~sEFI~~vTSeANeic 78 (95)
-.++.+|.-..-.|-.|-.|..-++++|.++..+-....
T Consensus 27 ~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~ 65 (88)
T 1nkp_A 27 ALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLI 65 (88)
T ss_dssp HHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777752222345558889999999999998866543
No 69
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=24.11 E-value=82 Score=25.30 Aligned_cols=34 Identities=12% Similarity=0.295 Sum_probs=26.1
Q ss_pred hhCCCCccccHhHHHHHHHHHHHHHHHHHhHHHH
Q 034435 43 KALPANGKIAKDAKETVQECVSEFISFITSEYDV 76 (95)
Q Consensus 43 e~LP~~~kIskdAkeli~eC~sEFI~~vTSeANe 76 (95)
|++.+.-.|-+|.+.++++||.+-=.|++....+
T Consensus 429 ~~i~~~~ei~~ei~~a~~~~~r~l~~~~~~~~~~ 462 (471)
T 1mu5_A 429 ESIAEVEDIEKEIKNALMEVARKLKQYLSEKRKE 462 (471)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444789999999999999988888865444
No 70
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=23.98 E-value=16 Score=25.95 Aligned_cols=31 Identities=35% Similarity=0.611 Sum_probs=0.0
Q ss_pred cChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHH
Q 034435 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSE 65 (95)
Q Consensus 31 ~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sE 65 (95)
.+=++||+|.++.. -.|+.++|+-|++.+.|
T Consensus 13 gVS~~TVSrvln~~----~~vs~~tr~rV~~~~~~ 43 (330)
T 3ctp_A 13 GISIATVSRHLNNT----GYVSEDAREKIQKVVDE 43 (330)
T ss_dssp -----------------------------------
T ss_pred CCCHHHHHHHHcCC----CCCCHHHHHHHHHHHHH
Confidence 34578999999873 36999999999888776
No 71
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=23.56 E-value=17 Score=26.15 Aligned_cols=35 Identities=23% Similarity=0.426 Sum_probs=0.0
Q ss_pred cChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHH
Q 034435 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFI 70 (95)
Q Consensus 31 ~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~v 70 (95)
.+=++||+|.++. .-.|+.++|+-|.+.+.| +.|.
T Consensus 17 gVS~~TVSr~Ln~----~~~vs~~tr~rV~~~a~~-lgY~ 51 (333)
T 3jvd_A 17 GVGYATASRALSG----KGYVSPQTREKVQAAAKE-LNYV 51 (333)
T ss_dssp ----------------------------------------
T ss_pred CcCHHHHHHHHcC----CCCCCHHHHHHHHHHHHH-HCCC
Confidence 4567899999886 247999999999998776 3444
No 72
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=23.51 E-value=45 Score=23.57 Aligned_cols=22 Identities=36% Similarity=0.317 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHh-HHHHHHHHHH
Q 034435 61 ECVSEFISFITS-EYDVVVLFLF 82 (95)
Q Consensus 61 eC~sEFI~~vTS-eANeic~~~~ 82 (95)
+.+.+||.|+.| |+.++.++++
T Consensus 252 ~~ak~F~~f~~S~egQ~ii~~~G 274 (279)
T 4gd5_A 252 ESGKSFIDFILSEEGQDIVAKEH 274 (279)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCHHHHHHHHHcc
Confidence 456789999887 6888877765
No 73
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=22.77 E-value=18 Score=26.19 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=0.0
Q ss_pred cChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHHH
Q 034435 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFIT 71 (95)
Q Consensus 31 ~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~vT 71 (95)
.+=++||+|.++.. -.|+.++|+-|++.+.|- .|.-
T Consensus 19 GVS~~TVSrvLn~~----~~Vs~~tr~rV~~aa~~l-gY~p 54 (348)
T 3bil_A 19 GVSIATASRALADN----PAVAASTRERIQQLASDL-GYRA 54 (348)
T ss_dssp -----------------------------------------
T ss_pred CCCHHHHHHHHCCC----CCCCHHHHHHHHHHHHHh-CCCc
Confidence 46689999999873 369999999999887773 4543
No 74
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=22.72 E-value=18 Score=25.85 Aligned_cols=35 Identities=14% Similarity=0.460 Sum_probs=0.0
Q ss_pred cChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHH
Q 034435 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFI 70 (95)
Q Consensus 31 ~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~v 70 (95)
.+=++||+|.++.. -.|+.++|+-|++.+.| +.|.
T Consensus 15 gVS~~TVSr~Ln~~----~~vs~~tr~rV~~~~~~-lgY~ 49 (339)
T 3h5o_A 15 GVSAITVSRVLNQP----QQVSEQLREKVMQAVDA-LAYV 49 (339)
T ss_dssp ----------------------------------------
T ss_pred CCCHHHHHHHHcCC----CCCCHHHHHHHHHHHHH-hCCC
Confidence 34578999998874 37999999999998877 3444
No 75
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=22.56 E-value=1.5e+02 Score=18.52 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=34.2
Q ss_pred ccChhHHHHHHHHhhCCC--Ccccc-HhHHHHHHHHH---------HHHHHHHHhHHHH
Q 034435 30 RYLPIANISRIMKKALPA--NGKIA-KDAKETVQECV---------SEFISFITSEYDV 76 (95)
Q Consensus 30 ~~LP~A~V~RImKe~LP~--~~kIs-kdAkeli~eC~---------sEFI~~vTSeANe 76 (95)
..|.++-+.++|+..||. ..+.+ .+..++|.+.= .||+.+++.-+..
T Consensus 27 G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~~~~~~~~ 85 (101)
T 3nso_A 27 YKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACLCLY 85 (101)
T ss_dssp TEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHCCCSCEEHHHHHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 688899999999987774 23444 45667777763 4999999887654
No 76
>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3
Probab=22.08 E-value=95 Score=18.51 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=29.4
Q ss_pred hCCCCccccHhHHHHHHHHHHHHHHHHHh-HHHHHHHHHH
Q 034435 44 ALPANGKIAKDAKETVQECVSEFISFITS-EYDVVVLFLF 82 (95)
Q Consensus 44 ~LP~~~kIskdAkeli~eC~sEFI~~vTS-eANeic~~~~ 82 (95)
.||+ .++..-+.+|.+..-.+|.++.. ...++|..++
T Consensus 40 ~lp~--~~~~~C~~~V~~y~~~ii~~l~~~~P~~iC~~lg 77 (81)
T 1n69_A 40 RLGP--GMADICKNYISQYSEIAIQMMMHMQPKEICALVG 77 (81)
T ss_dssp GGCT--THHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHTT
T ss_pred HcCc--HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhcC
Confidence 3564 58899999999999999988875 3788887654
No 77
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.91 E-value=45 Score=19.39 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=11.1
Q ss_pred cChhHHHHHHHHhh
Q 034435 31 YLPIANISRIMKKA 44 (95)
Q Consensus 31 ~LP~A~V~RImKe~ 44 (95)
.++++||+|.++..
T Consensus 49 ~is~~TVyR~L~~L 62 (83)
T 2fu4_A 49 EIGLATVYRVLNQF 62 (83)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHhhHHHHHHHH
Confidence 67888898888754
No 78
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=21.11 E-value=20 Score=25.49 Aligned_cols=35 Identities=17% Similarity=0.460 Sum_probs=0.0
Q ss_pred cChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHH
Q 034435 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFI 70 (95)
Q Consensus 31 ~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~v 70 (95)
..=++||+|.++.. -.|+.++|+-|.+.+.| +.|.
T Consensus 16 gVS~~TVSrvln~~----~~vs~~tr~rV~~~a~~-lgY~ 50 (332)
T 2o20_A 16 GVSMATVSRVVNGN----ANVKEKTRQKVLEAIAE-LDYR 50 (332)
T ss_dssp ----------------------------------------
T ss_pred CCCHHHHHHHHcCC----CCCCHHHHHHHHHHHHH-HCCC
Confidence 45678999999864 36999999999988877 3454
No 79
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=20.25 E-value=22 Score=25.68 Aligned_cols=35 Identities=20% Similarity=0.517 Sum_probs=0.0
Q ss_pred cChhHHHHHHHHhhCCCCccccHhHHHHHHHHHHHHHHHH
Q 034435 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFI 70 (95)
Q Consensus 31 ~LP~A~V~RImKe~LP~~~kIskdAkeli~eC~sEFI~~v 70 (95)
.+=++||+|.++.. -.|+.++|+-|.+.+.| +.|.
T Consensus 14 GVS~~TVSrvLn~~----~~vs~~tr~rV~~~a~~-lgY~ 48 (349)
T 1jye_A 14 GVSYQTVSRVVNQA----SHVSAKTREKVEAAMAE-LNYI 48 (349)
T ss_dssp ----------------------------------------
T ss_pred CCCHHHHHHHHcCC----CCCCHHHHHHHHHHHHH-HCCC
Confidence 35578999998863 36899999999888877 3454
No 80
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=20.17 E-value=1.2e+02 Score=18.33 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=29.8
Q ss_pred hCCCCccccHhHHHHHHHHHHHHHHHHHh--HHHHHHHHHH
Q 034435 44 ALPANGKIAKDAKETVQECVSEFISFITS--EYDVVVLFLF 82 (95)
Q Consensus 44 ~LP~~~kIskdAkeli~eC~sEFI~~vTS--eANeic~~~~ 82 (95)
.||. .++.+-+.++.+....+|.++.+ ...++|..++
T Consensus 41 ~lp~--~~~~~C~~~V~~y~~~ii~~l~~~~~P~~iC~~l~ 79 (91)
T 2qyp_A 41 KLPK--SLSEECQEVVDTYGSSILSILLEEVSPELVCSMLH 79 (91)
T ss_dssp TSCS--STTTTHHHHHHHHHHHHHHHHHHTCCHHHHHHTTT
T ss_pred HCCC--CcccchHHHHHHHHHHHHHHHHHcCCHHHHHhhcC
Confidence 4564 37999999999999999999765 4688888765
Done!