Query 034437
Match_columns 95
No_of_seqs 23 out of 25
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 03:58:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y69_L Cytochrome C oxidase su 97.8 7.3E-07 2.5E-11 57.0 -2.9 54 26-92 6-63 (63)
2 1v54_L VIIIA, cytochrome C oxi 97.0 2.8E-05 9.6E-10 47.2 -2.7 43 38-92 5-47 (47)
3 3igq_A GLR4197 protein; plgic 47.8 3.8 0.00013 28.9 -0.0 11 33-43 189-199 (201)
4 1cf4_B Protein (activated P21C 39.0 16 0.00055 22.0 1.8 17 17-33 5-21 (44)
5 4e97_A Lysozyme; hydrolase, al 22.8 9.4 0.00032 26.5 -1.4 26 54-79 10-53 (187)
6 3un6_A Hypothetical protein sa 22.2 19 0.00064 25.5 0.0 10 40-49 7-16 (341)
7 2a6a_A Hypothetical protein TM 17.1 62 0.0021 23.2 1.8 26 61-86 79-104 (218)
8 2pn2_A Uncharacterized protein 14.5 34 0.0012 22.9 -0.1 25 40-66 9-33 (155)
9 3h4o_A Nitroreductase family p 11.4 38 0.0013 22.9 -0.6 17 39-55 8-24 (191)
10 3t64_A Deoxyuridine 5'-triphos 11.2 57 0.0019 23.1 0.2 18 26-43 162-179 (181)
No 1
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=97.79 E-value=7.3e-07 Score=57.02 Aligned_cols=54 Identities=26% Similarity=0.448 Sum_probs=33.1
Q ss_pred ccceecccccccc----CCCCCCccchhhhhhcccccccccchhhhhhhhhhhhcccccceEEEEEeeecc
Q 034437 26 NRAFHSTGVKRMG----GHGHDEPYYLHAKHMYNLDRMKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKT 92 (95)
Q Consensus 26 sR~fhsTg~krmg----gHgHdeP~YiHAkhMYnl~~mK~qklk~~lav~~a~~iGv~vPv~Av~FQqkKT 92 (95)
.|.| +|.+.|++ |.|++.| |++. .|.++.+-.++++++|+++|++++.+|++|.
T Consensus 6 ~R~f-~ts~~r~sh~~eGp~sNLP--------F~~~----nk~~~~~~~~~f~g~GF~~PF~i~~~Ql~K~ 63 (63)
T 2y69_L 6 IRRF-TTSVVRRSHYEEGPGKNIP--------FSVE----NKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK 63 (63)
T ss_dssp -------------CCCCSTTTSSS--------SCCS----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHh-hccHHHhcCCCCCCCCcCC--------cCCc----chhHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence 4667 66666664 4567788 5543 4555777778999999999999999999983
No 2
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=96.98 E-value=2.8e-05 Score=47.22 Aligned_cols=43 Identities=21% Similarity=0.418 Sum_probs=33.7
Q ss_pred cCCCCCCccchhhhhhcccccccccchhhhhhhhhhhhcccccceEEEEEeeecc
Q 034437 38 GGHGHDEPYYLHAKHMYNLDRMKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKT 92 (95)
Q Consensus 38 ggHgHdeP~YiHAkhMYnl~~mK~qklk~~lav~~a~~iGv~vPv~Av~FQqkKT 92 (95)
+|.+++.| +++. .|..+.+...+++++|+++|++++.+|++|.
T Consensus 5 egp~sNLP--------F~~~----nk~~~~~~~~~f~g~GF~~PF~i~~~Ql~K~ 47 (47)
T 1v54_L 5 EGPGKNIP--------FSVE----NKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK 47 (47)
T ss_dssp CSTTTSSS--------SCCS----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcCC--------cCCC----cccHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 36678888 5433 4455667778899999999999999999983
No 3
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=47.82 E-value=3.8 Score=28.85 Aligned_cols=11 Identities=45% Similarity=0.912 Sum_probs=3.9
Q ss_pred ccccccCCCCC
Q 034437 33 GVKRMGGHGHD 43 (95)
Q Consensus 33 g~krmggHgHd 43 (95)
-++|+|||+|+
T Consensus 189 ~irR~~~~~~~ 199 (201)
T 3igq_A 189 RISRQGGHHHH 199 (201)
T ss_dssp EEEEC------
T ss_pred EEEECCCCCCc
Confidence 57889998865
No 4
>1cf4_B Protein (activated P21CDC42HS kinase); CDC42/ACK GTPase complex, G protein, transferase; HET: GNP; NMR {Homo sapiens}
Probab=39.04 E-value=16 Score=22.00 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=14.1
Q ss_pred cccccccccccceeccc
Q 034437 17 SQSLVPSSVNRAFHSTG 33 (95)
Q Consensus 17 ~~~~~~~~~sR~fhsTg 33 (95)
++.-+|+|+.++|..||
T Consensus 5 ~~~dIS~pl~~SFiHtg 21 (44)
T 1cf4_B 5 SAQDISQPLQNSFIHTG 21 (44)
T ss_dssp SSTTCCCSCSSCCCCCC
T ss_pred CHHHccccccccceecC
Confidence 45668999999998886
No 5
>4e97_A Lysozyme; hydrolase, alkylation with 2-mercaptoethanol; 1.30A {Enterobacteria phage T4} PDB: 4ekp_A 4ekq_A* 4ekr_A 4eks_A
Probab=22.85 E-value=9.4 Score=26.52 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=14.1
Q ss_pred cccccccccc------------------hhhhhhhhhhhhcccc
Q 034437 54 YNLDRMKHQG------------------LKMSLAVFSAFSIGVG 79 (95)
Q Consensus 54 Ynl~~mK~qk------------------lk~~lav~~a~~iGv~ 79 (95)
||++..++.+ ++......+...||+|
T Consensus 10 ~~~p~~~~~~~~~s~~l~e~IK~~EG~r~~~Y~D~~G~~TIGyG 53 (187)
T 4e97_A 10 YDIPTTENLYFQGSMNIFEMLRIDEGLRLKIYKDCEGYYTIGIG 53 (187)
T ss_dssp ---CCHHHHHHHHHCCHHHHHHHHHCCEEEEEECTTSCEEEETT
T ss_pred cCCCcccccCccchHHHHHHHHHhcCccceeeECCCCCceeccC
Confidence 8888876655 3444555666666666
No 6
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=22.19 E-value=19 Score=25.45 Aligned_cols=10 Identities=40% Similarity=0.823 Sum_probs=0.0
Q ss_pred CCCCCccchh
Q 034437 40 HGHDEPYYLH 49 (95)
Q Consensus 40 HgHdeP~YiH 49 (95)
|+|+||.|-|
T Consensus 7 ~~~~~~~~~~ 16 (341)
T 3un6_A 7 HHHHENLYFQ 16 (341)
T ss_dssp ----------
T ss_pred cccchhHHHh
Confidence 4477775443
No 7
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=17.06 E-value=62 Score=23.23 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=21.6
Q ss_pred ccchhhhhhhhhhhhcccccceEEEE
Q 034437 61 HQGLKMSLAVFSAFSIGVGVPIYAVI 86 (95)
Q Consensus 61 ~qklk~~lav~~a~~iGv~vPv~Av~ 86 (95)
.-.|.+++++.=.++.+..+|++.|-
T Consensus 79 fTGlRiG~~~Ak~La~~~~iPl~gVs 104 (218)
T 2a6a_A 79 LTGLRVGIATVVGLVSPYDIPVAPLN 104 (218)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCEEEEC
T ss_pred hHhHHHHHHHHHHHHHHcCCCEEEeC
Confidence 34678888888889999999999874
No 8
>2pn2_A Uncharacterized protein; putative osmotic stress induced and detoxification response structural genomics; 1.95A {Psychrobacter arcticus} SCOP: d.227.1.1
Probab=14.49 E-value=34 Score=22.92 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=9.8
Q ss_pred CCCCCccchhhhhhcccccccccchhh
Q 034437 40 HGHDEPYYLHAKHMYNLDRMKHQGLKM 66 (95)
Q Consensus 40 HgHdeP~YiHAkhMYnl~~mK~qklk~ 66 (95)
|.|+|..|. +|||.+...-.-.+++
T Consensus 9 ~~~~~~~~~--~~~~~v~~~~~g~~~~ 33 (155)
T 2pn2_A 9 HHHHENLYF--QGMTTSKVTYQGDLRT 33 (155)
T ss_dssp ------CCC--CCCCCEEEEEEETTEE
T ss_pred cccccceEE--EEEEEEEEEEcCCcEE
Confidence 557788664 6777665433333333
No 9
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*
Probab=11.38 E-value=38 Score=22.88 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=2.3
Q ss_pred CCCCCCccchhhhhhcc
Q 034437 39 GHGHDEPYYLHAKHMYN 55 (95)
Q Consensus 39 gHgHdeP~YiHAkhMYn 55 (95)
-|+|+||.|.=..-+++
T Consensus 8 ~~~~~~~~~~~~~~~~~ 24 (191)
T 3h4o_A 8 HHHHHENLYFQGMNFVE 24 (191)
T ss_dssp ------------CCHHH
T ss_pred cccchhhhhcCHHHHHH
Confidence 36688998876554443
No 10
>3t64_A Deoxyuridine 5'-triphosphate nucleotidohydrolase,; hydrolase, DUTP binding, nucleus, hydrolase-hydrolase inhibi complex; HET: DU3; 1.65A {Plasmodium falciparum 3D7} PDB: 3t6y_A* 3t70_A* 3t60_A* 2y8c_A* 1vyq_A*
Probab=11.18 E-value=57 Score=23.07 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=4.6
Q ss_pred ccceeccccccccCCCCC
Q 034437 26 NRAFHSTGVKRMGGHGHD 43 (95)
Q Consensus 26 sR~fhsTg~krmggHgHd 43 (95)
..||=|||-.++-.|.|+
T Consensus 162 ~gGFGSTGkn~~~~~~~~ 179 (181)
T 3t64_A 162 EGGFGSTSNNKYEAHHHH 179 (181)
T ss_dssp TCSSCC------------
T ss_pred CCCcCCCCCCCCcccccc
Confidence 348999999999666543
Done!