Query 034437
Match_columns 95
No_of_seqs 23 out of 25
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 03:58:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034437.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034437hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54l_ f.23.6.1 (L:) Mitochon 74.7 0.046 3.3E-06 32.2 -3.6 30 62-91 16-45 (46)
2 d1c4ka1 c.23.1.4 (A:1-107) Orn 25.2 13 0.00096 23.7 1.4 12 75-86 51-62 (107)
3 d2a6aa1 c.55.1.9 (A:1-103) Hyp 18.2 30 0.0022 20.2 1.9 24 62-85 68-91 (103)
4 d1okja1 c.55.1.9 (A:1-106) Hyp 15.4 31 0.0022 20.4 1.4 25 62-86 68-92 (106)
5 d1l5ja2 c.8.2.1 (A:161-372) Ac 11.2 37 0.0027 24.1 1.0 24 12-55 20-43 (212)
6 d1pvma3 g.41.13.1 (A:143-178) 9.4 43 0.0031 17.9 0.6 9 75-83 8-16 (36)
7 d2hoea3 c.55.1.10 (A:72-199) N 8.0 35 0.0025 19.4 -0.2 11 72-82 65-75 (128)
8 d1z6ra2 c.55.1.10 (A:82-210) M 7.8 34 0.0025 19.5 -0.3 14 70-83 62-75 (129)
9 d1fmca_ c.2.1.2 (A:) 7-alpha-h 7.1 40 0.0029 22.1 -0.3 27 53-80 1-27 (255)
10 d2etla1 d.3.1.6 (A:1-223) Ubiq 6.8 87 0.0063 21.2 1.4 9 80-88 44-52 (223)
No 1
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=74.71 E-value=0.046 Score=32.21 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=23.3
Q ss_pred cchhhhhhhhhhhhcccccceEEEEEeeec
Q 034437 62 QGLKMSLAVFSAFSIGVGVPIYAVIFQQRK 91 (95)
Q Consensus 62 qklk~~lav~~a~~iGv~vPv~Av~FQqkK 91 (95)
.|.+.-.....+++.|++.|+++|-+|.-|
T Consensus 16 Nk~rLla~m~~~fGsgfa~PF~ivRhqLlK 45 (46)
T d1v54l_ 16 NKWRLLAMMTLFFGSGFAAPFFIVRHQLLK 45 (46)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhccccchHHHHHHHHhc
Confidence 455555556678999999999999888755
No 2
>d1c4ka1 c.23.1.4 (A:1-107) Ornithine decarboxylase N-terminal "wing" domain {Lactobacillus sp., strain 30a [TaxId: 1591]}
Probab=25.24 E-value=13 Score=23.68 Aligned_cols=12 Identities=33% Similarity=0.839 Sum_probs=9.6
Q ss_pred hcccccceEEEE
Q 034437 75 SIGVGVPIYAVI 86 (95)
Q Consensus 75 ~iGv~vPv~Av~ 86 (95)
-.|++||||.++
T Consensus 51 ~TgF~IPvFv~~ 62 (107)
T d1c4ka1 51 ATKFGIPVFAVT 62 (107)
T ss_dssp TTCSCCCEEEEE
T ss_pred hcCCCCCEEEEe
Confidence 369999999864
No 3
>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}
Probab=18.20 E-value=30 Score=20.15 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=19.9
Q ss_pred cchhhhhhhhhhhhcccccceEEE
Q 034437 62 QGLKMSLAVFSAFSIGVGVPIYAV 85 (95)
Q Consensus 62 qklk~~lav~~a~~iGv~vPv~Av 85 (95)
-.+.+++++.=.++.+..+|++.|
T Consensus 68 TglRig~s~akgla~~~~ip~~gi 91 (103)
T d2a6aa1 68 TGLRVGIATVVGLVSPYDIPVAPL 91 (103)
T ss_dssp HHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred hhHHHHHHHHHHHHHHcCCCEEEe
Confidence 356788888888889999999987
No 4
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]}
Probab=15.44 E-value=31 Score=20.37 Aligned_cols=25 Identities=16% Similarity=0.586 Sum_probs=20.6
Q ss_pred cchhhhhhhhhhhhcccccceEEEE
Q 034437 62 QGLKMSLAVFSAFSIGVGVPIYAVI 86 (95)
Q Consensus 62 qklk~~lav~~a~~iGv~vPv~Av~ 86 (95)
-.+.+++++.=.++.+..+|++.|-
T Consensus 68 TglRig~s~akgla~~~~ip~~~v~ 92 (106)
T d1okja1 68 TGVRIGIGIAQGLALGAELPMIGVS 92 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccchHHHHHHHHHHHHcCCCEEEeC
Confidence 3567888888888999999999873
No 5
>d1l5ja2 c.8.2.1 (A:161-372) Aconitase B, second N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.20 E-value=37 Score=24.11 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=17.1
Q ss_pred hhhhccccccccccccceeccccccccCCCCCCccchhhhhhcc
Q 034437 12 KLLASSQSLVPSSVNRAFHSTGVKRMGGHGHDEPYYLHAKHMYN 55 (95)
Q Consensus 12 ~l~~~~~~~~~~~~sR~fhsTg~krmggHgHdeP~YiHAkhMYn 55 (95)
.+|+.+..+-||| |-| |||+-|+.
T Consensus 20 DdLSPa~dA~SR~------------------Dip--LHa~~Ml~ 43 (212)
T d1l5ja2 20 DDLSPAPDAWSRP------------------DIP--LHALAMLK 43 (212)
T ss_dssp HHHSCGGGGGGTT------------------SHH--HHGGGTTC
T ss_pred ccCCCcccccCCC------------------Cch--hHHHHHHh
Confidence 3566677776766 556 89999985
No 6
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=9.36 E-value=43 Score=17.94 Aligned_cols=9 Identities=44% Similarity=0.951 Sum_probs=7.1
Q ss_pred hcccccceE
Q 034437 75 SIGVGVPIY 83 (95)
Q Consensus 75 ~iGv~vPv~ 83 (95)
++|+-+|||
T Consensus 8 gvgvl~pvy 16 (36)
T d1pvma3 8 GVGVLEPVY 16 (36)
T ss_dssp SSSBEEEEE
T ss_pred CceEEEEee
Confidence 568888987
No 7
>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=7.96 E-value=35 Score=19.37 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=8.1
Q ss_pred hhhhcccccce
Q 034437 72 SAFSIGVGVPI 82 (95)
Q Consensus 72 ~a~~iGv~vPv 82 (95)
-..+|||++|=
T Consensus 65 ~i~gigi~~pG 75 (128)
T d2hoea3 65 KLSALTVAAPG 75 (128)
T ss_dssp CCCEEEEEESS
T ss_pred ceEEEecceee
Confidence 35678888884
No 8
>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}
Probab=7.77 E-value=34 Score=19.46 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=9.7
Q ss_pred hhhhhhcccccceE
Q 034437 70 VFSAFSIGVGVPIY 83 (95)
Q Consensus 70 v~~a~~iGv~vPv~ 83 (95)
.--.++||+++|=.
T Consensus 62 ~~~i~gIgi~~pG~ 75 (129)
T d1z6ra2 62 LERLTSIAITLPGI 75 (129)
T ss_dssp CCCEEEEEEEESSE
T ss_pred cccceeEEEeeeee
Confidence 33467889999843
No 9
>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=7.15 E-value=40 Score=22.11 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=18.6
Q ss_pred hcccccccccchhhhhhhhhhhhccccc
Q 034437 53 MYNLDRMKHQGLKMSLAVFSAFSIGVGV 80 (95)
Q Consensus 53 MYnl~~mK~qklk~~lav~~a~~iGv~v 80 (95)
|||-|.||=+ =|..|-+.+.=+||-++
T Consensus 1 m~~~d~m~L~-gK~alITGas~GIG~ai 27 (255)
T d1fmca_ 1 MFNSDNLRLD-GKCAIITGAGAGIGKEI 27 (255)
T ss_dssp CCCGGGGCCT-TCEEEETTTTSHHHHHH
T ss_pred CCCCCCCCCC-CCEEEEeCCCcHHHHHH
Confidence 8999998632 36667677766677654
No 10
>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase isozyme l1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.76 E-value=87 Score=21.19 Aligned_cols=9 Identities=22% Similarity=0.512 Sum_probs=7.3
Q ss_pred cceEEEEEe
Q 034437 80 VPIYAVIFQ 88 (95)
Q Consensus 80 vPv~Av~FQ 88 (95)
=||||++|=
T Consensus 44 ~Pv~alIfL 52 (223)
T d2etla1 44 APACALLLL 52 (223)
T ss_dssp SCEEEEEEE
T ss_pred CCceEEEEE
Confidence 489999984
Done!