BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034444
         (94 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ED6|A Chain A, Crystal Structure Of Envelope Protein Vp28 From White Spot
           Syndrome Virus (Wssv)
 pdb|2ED6|B Chain B, Crystal Structure Of Envelope Protein Vp28 From White Spot
           Syndrome Virus (Wssv)
 pdb|2ED6|C Chain C, Crystal Structure Of Envelope Protein Vp28 From White Spot
           Syndrome Virus (Wssv)
 pdb|2ED6|D Chain D, Crystal Structure Of Envelope Protein Vp28 From White Spot
           Syndrome Virus (Wssv)
 pdb|2ED6|E Chain E, Crystal Structure Of Envelope Protein Vp28 From White Spot
           Syndrome Virus (Wssv)
 pdb|2ED6|F Chain F, Crystal Structure Of Envelope Protein Vp28 From White Spot
           Syndrome Virus (Wssv)
 pdb|2ED6|G Chain G, Crystal Structure Of Envelope Protein Vp28 From White Spot
           Syndrome Virus (Wssv)
 pdb|2ED6|H Chain H, Crystal Structure Of Envelope Protein Vp28 From White Spot
           Syndrome Virus (Wssv)
 pdb|2ED6|I Chain I, Crystal Structure Of Envelope Protein Vp28 From White Spot
           Syndrome Virus (Wssv)
 pdb|2ED6|J Chain J, Crystal Structure Of Envelope Protein Vp28 From White Spot
           Syndrome Virus (Wssv)
 pdb|2ED6|K Chain K, Crystal Structure Of Envelope Protein Vp28 From White Spot
           Syndrome Virus (Wssv)
 pdb|2ED6|L Chain L, Crystal Structure Of Envelope Protein Vp28 From White Spot
           Syndrome Virus (Wssv)
          Length = 170

 Score = 29.3 bits (64), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 2   ADVVCNNFTGRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIHGI 49
           AD+V     GR +E+ +G + T+ G+    +   RK  + G  ++  I
Sbjct: 65  ADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKI 112


>pdb|3LHO|A Chain A, Crystal Structure Of Putative Hydrolase (Yp_751971.1)
          From Shewanella Frigidimarina Ncimb 400 At 1.80 A
          Resolution
          Length = 267

 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 18 LGNHFTYIGSVAELHANYRKSKLVGKHLIH 47
          L  HFT IG V      + + KL+ KH  H
Sbjct: 57 LAKHFTSIGYVDSGDYKFEQKKLIAKHFEH 86


>pdb|1X7F|A Chain A, Crystal Structure Of An Uncharacterized B. Cereus Protein
          Length = 385

 Score = 26.2 bits (56), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 7   NNFTGRVIELKLGNHFTYIGSVAELHANYRKSKLVGKH 44
           NN  G  IEL + N   Y+ ++    AN  KS L+G H
Sbjct: 136 NNPYGLKIELNVSNDIAYLENILSHQAN--KSALIGCH 171


>pdb|1TY0|A Chain A, Crystal Structure Of The Streptococcal Pyrogenic Exotoxin
           J (Spe-J)
 pdb|1TY0|B Chain B, Crystal Structure Of The Streptococcal Pyrogenic Exotoxin
           J (Spe-J)
 pdb|1TY0|C Chain C, Crystal Structure Of The Streptococcal Pyrogenic Exotoxin
           J (Spe-J)
 pdb|1TY2|A Chain A, Crystal Structure Of The Streptococcal Pyrogenic Exotoxin
           J (Spe-J)
 pdb|1TY2|B Chain B, Crystal Structure Of The Streptococcal Pyrogenic Exotoxin
           J (Spe-J)
 pdb|1TY2|C Chain C, Crystal Structure Of The Streptococcal Pyrogenic Exotoxin
           J (Spe-J)
          Length = 211

 Score = 25.4 bits (54), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 21  HFTYIGSVAELHANYRKSKLVGKHLIHGIQ 50
           ++ Y G    +++N   SK+VG  LI G+Q
Sbjct: 85  YYIYGGVTPSVNSNSENSKIVGNLLIDGVQ 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,204,184
Number of Sequences: 62578
Number of extensions: 60677
Number of successful extensions: 108
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 4
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)