Query 034444
Match_columns 94
No_of_seqs 190 out of 1217
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 02:56:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.5 9.2E-14 2E-18 102.9 7.1 83 1-94 404-498 (623)
2 PLN00113 leucine-rich repeat r 99.2 7E-11 1.5E-15 90.5 7.1 89 1-93 60-195 (968)
3 PLN00113 leucine-rich repeat r 98.9 2.7E-09 5.8E-14 81.9 5.6 64 28-94 508-579 (968)
4 PLN03150 hypothetical protein; 98.8 5.4E-09 1.2E-13 77.8 5.1 72 11-93 442-522 (623)
5 KOG0617 Ras suppressor protein 98.5 1.7E-08 3.6E-13 65.3 -0.9 71 11-94 33-110 (264)
6 PF13855 LRR_8: Leucine rich r 98.4 2.4E-07 5.2E-12 49.2 2.9 56 12-94 2-57 (61)
7 KOG0472 Leucine-rich repeat pr 98.4 2.4E-07 5.2E-12 66.2 3.0 43 48-94 493-536 (565)
8 PF12799 LRR_4: Leucine Rich r 98.2 1.4E-06 3.1E-11 43.7 2.9 32 59-94 1-32 (44)
9 KOG0472 Leucine-rich repeat pr 98.0 1.5E-06 3.3E-11 62.2 1.0 70 12-94 389-466 (565)
10 KOG0617 Ras suppressor protein 97.8 1.9E-06 4.2E-11 55.8 -2.1 37 51-91 142-178 (264)
11 KOG0618 Serine/threonine phosp 97.7 1.1E-05 2.4E-10 62.3 1.3 70 12-94 46-122 (1081)
12 PF12799 LRR_4: Leucine Rich r 97.7 4.1E-05 8.9E-10 38.3 2.7 38 13-79 3-40 (44)
13 KOG0444 Cytoskeletal regulator 97.7 2.3E-06 5.1E-11 64.5 -2.8 46 24-70 273-327 (1255)
14 KOG0444 Cytoskeletal regulator 97.7 7.7E-06 1.7E-10 61.8 -0.2 66 24-94 155-253 (1255)
15 PLN03210 Resistant to P. syrin 97.6 9.5E-05 2.1E-09 58.7 5.2 60 29-93 621-688 (1153)
16 KOG4658 Apoptotic ATPase [Sign 97.6 4.7E-05 1E-09 59.1 2.9 71 12-93 572-649 (889)
17 PLN03210 Resistant to P. syrin 97.6 0.00011 2.5E-09 58.3 4.9 70 12-94 635-712 (1153)
18 PF00560 LRR_1: Leucine Rich R 97.6 2.4E-05 5.3E-10 33.5 0.5 22 60-85 1-22 (22)
19 KOG0618 Serine/threonine phosp 97.5 3.5E-05 7.6E-10 59.7 0.9 78 11-94 383-484 (1081)
20 KOG4658 Apoptotic ATPase [Sign 97.5 5.8E-05 1.3E-09 58.7 1.7 52 39-94 567-626 (889)
21 PRK15387 E3 ubiquitin-protein 97.3 0.00022 4.7E-09 54.9 3.0 52 29-84 412-467 (788)
22 PRK15387 E3 ubiquitin-protein 97.2 0.00037 8E-09 53.7 3.3 32 59-94 422-453 (788)
23 PF14580 LRR_9: Leucine-rich r 97.2 0.0009 2E-08 42.9 4.6 68 12-93 43-120 (175)
24 COG4886 Leucine-rich repeat (L 97.2 0.00039 8.5E-09 48.9 3.2 69 13-94 118-194 (394)
25 KOG4579 Leucine-rich repeat (L 97.1 0.0001 2.2E-09 46.3 -0.0 70 11-93 53-130 (177)
26 KOG4194 Membrane glycoprotein 97.1 0.00022 4.8E-09 53.6 1.3 70 14-94 81-157 (873)
27 PF13855 LRR_8: Leucine rich r 97.0 0.0005 1.1E-08 36.2 1.9 32 59-94 1-33 (61)
28 PF14580 LRR_9: Leucine-rich r 97.0 0.00072 1.6E-08 43.4 2.8 68 12-94 20-96 (175)
29 cd00116 LRR_RI Leucine-rich re 96.9 0.00055 1.2E-08 46.3 1.7 37 54-93 188-228 (319)
30 cd00116 LRR_RI Leucine-rich re 96.8 0.00065 1.4E-08 45.9 1.5 12 59-70 137-148 (319)
31 COG4886 Leucine-rich repeat (L 96.8 0.00049 1.1E-08 48.4 0.7 69 12-93 141-216 (394)
32 KOG4237 Extracellular matrix p 96.7 0.00092 2E-08 48.1 2.0 41 48-91 79-120 (498)
33 KOG0532 Leucine-rich repeat (L 96.7 0.00027 5.8E-09 52.7 -0.6 39 50-93 203-241 (722)
34 PF13504 LRR_7: Leucine rich r 96.6 0.0013 2.7E-08 26.3 1.1 17 59-79 1-17 (17)
35 KOG4194 Membrane glycoprotein 96.4 0.0011 2.4E-08 49.9 0.9 70 13-94 271-349 (873)
36 KOG0532 Leucine-rich repeat (L 96.4 0.0011 2.3E-08 49.6 0.7 60 29-94 153-219 (722)
37 PRK15370 E3 ubiquitin-protein 96.2 0.0095 2E-07 46.0 4.8 28 60-93 263-290 (754)
38 PRK15370 E3 ubiquitin-protein 96.2 0.007 1.5E-07 46.7 4.1 65 12-93 200-269 (754)
39 smart00370 LRR Leucine-rich re 96.2 0.0052 1.1E-07 26.9 2.0 21 58-82 1-21 (26)
40 smart00369 LRR_TYP Leucine-ric 96.2 0.0052 1.1E-07 26.9 2.0 21 58-82 1-21 (26)
41 KOG4237 Extracellular matrix p 96.1 0.002 4.3E-08 46.5 0.5 74 9-93 272-353 (498)
42 KOG1259 Nischarin, modulator o 95.4 0.0054 1.2E-07 43.2 0.7 16 55-70 325-340 (490)
43 PF13516 LRR_6: Leucine Rich r 95.1 0.0084 1.8E-07 25.7 0.5 23 58-83 1-23 (24)
44 KOG4579 Leucine-rich repeat (L 94.7 0.003 6.5E-08 39.7 -2.0 43 48-94 65-108 (177)
45 KOG3665 ZYG-1-like serine/thre 94.1 0.074 1.6E-06 40.9 3.8 70 11-94 173-258 (699)
46 smart00364 LRR_BAC Leucine-ric 93.0 0.059 1.3E-06 23.9 1.0 18 59-80 2-19 (26)
47 KOG1259 Nischarin, modulator o 91.7 0.089 1.9E-06 37.3 1.2 40 50-94 298-337 (490)
48 KOG0473 Leucine-rich repeat pr 90.7 0.0095 2.1E-07 40.6 -4.2 69 11-92 42-117 (326)
49 KOG2739 Leucine-rich acidic nu 90.3 0.18 3.8E-06 34.4 1.6 40 49-93 81-123 (260)
50 KOG2739 Leucine-rich acidic nu 90.1 0.21 4.6E-06 34.1 1.8 37 57-94 63-99 (260)
51 smart00365 LRR_SD22 Leucine-ri 88.2 0.45 9.7E-06 21.0 1.6 13 58-70 1-13 (26)
52 KOG3665 ZYG-1-like serine/thre 88.2 0.47 1E-05 36.6 2.7 38 54-94 190-228 (699)
53 PRK15386 type III secretion pr 87.9 0.52 1.1E-05 34.4 2.6 12 59-70 156-167 (426)
54 COG5238 RNA1 Ran GTPase-activa 87.5 0.42 9E-06 33.5 1.8 71 12-93 31-127 (388)
55 smart00368 LRR_RI Leucine rich 87.4 0.48 1E-05 21.0 1.5 12 59-70 2-13 (28)
56 KOG0531 Protein phosphatase 1, 87.1 0.34 7.3E-06 34.7 1.3 34 55-93 136-169 (414)
57 KOG3207 Beta-tubulin folding c 85.9 0.34 7.3E-06 35.6 0.8 51 11-70 246-312 (505)
58 KOG1859 Leucine-rich repeat pr 85.4 0.1 2.3E-06 40.7 -2.0 12 82-93 250-261 (1096)
59 KOG2123 Uncharacterized conser 83.5 0.44 9.6E-06 33.5 0.5 68 12-92 42-123 (388)
60 KOG1859 Leucine-rich repeat pr 81.2 0.38 8.3E-06 37.8 -0.5 31 58-93 186-216 (1096)
61 KOG1909 Ran GTPase-activating 80.4 0.39 8.6E-06 34.3 -0.6 72 11-93 30-127 (382)
62 KOG0531 Protein phosphatase 1, 78.4 1.1 2.4E-05 32.0 1.1 34 55-93 114-147 (414)
63 KOG1644 U2-associated snRNP A' 74.6 4.8 0.0001 27.0 3.2 35 55-93 109-147 (233)
64 COG5238 RNA1 Ran GTPase-activa 68.6 3.3 7.2E-05 29.2 1.5 22 11-40 92-113 (388)
65 KOG2982 Uncharacterized conser 67.2 1.4 3.1E-05 31.3 -0.5 53 10-70 96-157 (418)
66 PRK15386 type III secretion pr 66.6 4.1 9E-05 29.9 1.7 8 13-20 54-61 (426)
67 KOG2982 Uncharacterized conser 66.0 4.9 0.00011 28.7 1.9 18 55-75 93-110 (418)
68 KOG3207 Beta-tubulin folding c 61.2 4.5 9.8E-05 30.0 1.1 15 56-70 169-183 (505)
69 smart00367 LRR_CC Leucine-rich 59.9 7.7 0.00017 16.4 1.4 13 58-70 1-13 (26)
70 KOG3864 Uncharacterized conser 57.7 2.1 4.6E-05 28.5 -0.9 34 58-93 150-183 (221)
71 KOG2120 SCF ubiquitin ligase, 57.1 4.2 9.2E-05 29.0 0.4 37 55-94 206-242 (419)
72 KOG1909 Ran GTPase-activating 52.6 3.3 7.1E-05 29.8 -0.7 52 11-70 92-168 (382)
73 KOG1644 U2-associated snRNP A' 41.5 26 0.00057 23.6 2.2 39 50-92 78-119 (233)
74 smart00446 LRRcap occurring C- 39.0 16 0.00034 16.1 0.6 12 82-93 9-20 (26)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.48 E-value=9.2e-14 Score=102.91 Aligned_cols=83 Identities=29% Similarity=0.286 Sum_probs=73.9
Q ss_pred CcceEecC--CC--CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccC
Q 034444 1 MADVVCNN--FT--GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSN 68 (94)
Q Consensus 1 w~gv~c~~--~~--~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~ 68 (94)
|.||.|.. .. ..|+.|+|++ |.+.|.+|+++..+++|+. .|.+|+.++.+++|+.|+|++
T Consensus 404 w~Gv~C~~~~~~~~~~v~~L~L~~--------n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~ 475 (623)
T PLN03150 404 WSGADCQFDSTKGKWFIDGLGLDN--------QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY 475 (623)
T ss_pred cccceeeccCCCCceEEEEEECCC--------CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCC
Confidence 89999952 22 2589999999 9999999999999998887 578999999999999999999
Q ss_pred CCCCcccccChHhhhCCCCCcEEecC
Q 034444 69 LSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 69 N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
|+ ++|.+|+.++++++|+.|+|+
T Consensus 476 N~---lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 476 NS---FNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred CC---CCCCCchHHhcCCCCCEEECc
Confidence 99 999999999999999999874
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.18 E-value=7e-11 Score=90.52 Aligned_cols=89 Identities=29% Similarity=0.378 Sum_probs=51.1
Q ss_pred CcceEecCCCCcEEEEEeCCCC----------------CCCCcccceeeeCCcccc-CCcCccc----------------
Q 034444 1 MADVVCNNFTGRVIELKLGNHF----------------TYIGSVAELHANYRKSKL-VGKHLIH---------------- 47 (94)
Q Consensus 1 w~gv~c~~~~~~v~~L~l~~~~----------------~~~~~~n~l~g~~p~~l~-~l~~L~~---------------- 47 (94)
|.||+|++ .++|+.|++++.. .+++++|.+.|.+|..+. .+++|++
T Consensus 60 w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 138 (968)
T PLN00113 60 WQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS 138 (968)
T ss_pred CcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccc
Confidence 89999974 4689999998833 023444555555554432 3333333
Q ss_pred --------------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 48 --------------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 48 --------------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
.+.+|..++++++|++|++++|. +.+.+|..++++++|++|++
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV---LVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc---ccccCChhhhhCcCCCeeec
Confidence 23445555555555555555555 55555555555555555554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.90 E-value=2.7e-09 Score=81.93 Aligned_cols=64 Identities=28% Similarity=0.363 Sum_probs=47.3
Q ss_pred ccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 28 VAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 28 ~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
+|.+.|.+|..+..+++|+. .+.+|..+..+++|+.|++++|+ ++|.+|..+..+++|++|+++
T Consensus 508 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~---l~~~~p~~l~~l~~L~~l~ls 579 (968)
T PLN00113 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ---LSGEIPKNLGNVESLVQVNIS 579 (968)
T ss_pred CCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc---ccccCChhHhcCcccCEEecc
Confidence 37777777777777776666 56677777777777777777777 777777777777777777764
No 4
>PLN03150 hypothetical protein; Provisional
Probab=98.83 E-value=5.4e-09 Score=77.81 Aligned_cols=72 Identities=28% Similarity=0.340 Sum_probs=62.4
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSL 82 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i 82 (94)
.+++.|+|++ |.+.|.+|+.++.+++|+. .|.+|+.++++++|+.|+|++|+ ++|.+|..+
T Consensus 442 ~~L~~L~Ls~--------N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~---l~g~iP~~l 510 (623)
T PLN03150 442 RHLQSINLSG--------NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS---LSGRVPAAL 510 (623)
T ss_pred CCCCEEECCC--------CcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc---ccccCChHH
Confidence 4678999999 9999999999999999987 68899999999999999999999 999999998
Q ss_pred hCC-CCCcEEec
Q 034444 83 GNL-YSFTSFDT 93 (94)
Q Consensus 83 ~~l-~~L~~L~l 93 (94)
+.+ .++..+++
T Consensus 511 ~~~~~~~~~l~~ 522 (623)
T PLN03150 511 GGRLLHRASFNF 522 (623)
T ss_pred hhccccCceEEe
Confidence 764 34444443
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.48 E-value=1.7e-08 Score=65.27 Aligned_cols=71 Identities=24% Similarity=0.280 Sum_probs=61.2
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLG 83 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~ 83 (94)
..++.+.|+. |.++ .+|+.|..+.+|+. ...+|..|++|++|+.|+++-|+ +. .+|..+|
T Consensus 33 s~ITrLtLSH--------NKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr---l~-~lprgfg 99 (264)
T KOG0617|consen 33 SNITRLTLSH--------NKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR---LN-ILPRGFG 99 (264)
T ss_pred hhhhhhhccc--------Ccee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh---hh-cCccccC
Confidence 3467777888 9998 88999999988887 56789999999999999999999 87 7899999
Q ss_pred CCCCCcEEecC
Q 034444 84 NLYSFTSFDTF 94 (94)
Q Consensus 84 ~l~~L~~L~ls 94 (94)
.++.|++|||+
T Consensus 100 s~p~levldlt 110 (264)
T KOG0617|consen 100 SFPALEVLDLT 110 (264)
T ss_pred CCchhhhhhcc
Confidence 99999998874
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=2.4e-07 Score=49.23 Aligned_cols=56 Identities=29% Similarity=0.360 Sum_probs=42.0
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCcccccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEE
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIHGIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSF 91 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L 91 (94)
+++.|++++ |++. .+|+. .+..+++|++|++++|. ++.--|..+..+++|++|
T Consensus 2 ~L~~L~l~~--------n~l~-~i~~~---------------~f~~l~~L~~L~l~~N~---l~~i~~~~f~~l~~L~~L 54 (61)
T PF13855_consen 2 NLESLDLSN--------NKLT-EIPPD---------------SFSNLPNLETLDLSNNN---LTSIPPDAFSNLPNLRYL 54 (61)
T ss_dssp TESEEEETS--------STES-EECTT---------------TTTTGTTESEEEETSSS---ESEEETTTTTTSTTESEE
T ss_pred cCcEEECCC--------CCCC-ccCHH---------------HHcCCCCCCEeEccCCc---cCccCHHHHcCCCCCCEE
Confidence 467888888 8887 44432 45667888999999998 875444577889999988
Q ss_pred ecC
Q 034444 92 DTF 94 (94)
Q Consensus 92 ~ls 94 (94)
+++
T Consensus 55 ~l~ 57 (61)
T PF13855_consen 55 DLS 57 (61)
T ss_dssp EET
T ss_pred eCc
Confidence 874
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.39 E-value=2.4e-07 Score=66.18 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=38.5
Q ss_pred ccCCchh-hhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 48 GIQIPIY-IASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 48 ~~~iP~~-i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
.+.+|+. +.+|.+|..||+.+|. +. .+|+.++++++|++|++.
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNd---lq-~IPp~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNND---LQ-QIPPILGNMTNLRHLELD 536 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCc---hh-hCChhhccccceeEEEec
Confidence 5677776 9999999999999999 88 899999999999999874
No 8
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.23 E-value=1.4e-06 Score=43.70 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=20.3
Q ss_pred CCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 59 ENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 59 ~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
++|++|++++|+ ++ .+|+.+++|++|+.|+++
T Consensus 1 ~~L~~L~l~~N~---i~-~l~~~l~~l~~L~~L~l~ 32 (44)
T PF12799_consen 1 KNLEELDLSNNQ---IT-DLPPELSNLPNLETLNLS 32 (44)
T ss_dssp TT-SEEEETSSS----S-SHGGHGTTCTTSSEEEET
T ss_pred CcceEEEccCCC---Cc-ccCchHhCCCCCCEEEec
Confidence 356777777777 66 566667777777777653
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.04 E-value=1.5e-06 Score=62.23 Aligned_cols=70 Identities=23% Similarity=0.382 Sum_probs=59.2
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLG 83 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~ 83 (94)
-|+.++++. |++. ++|..+..+..+.. .+-+|..++++++|..|++++|. +. .+|.+++
T Consensus 389 ~Vt~Vnfsk--------NqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~---Ln-~LP~e~~ 455 (565)
T KOG0472|consen 389 IVTSVNFSK--------NQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL---LN-DLPEEMG 455 (565)
T ss_pred ceEEEeccc--------chHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch---hh-hcchhhh
Confidence 377888888 9998 88988777776665 56678889999999999999998 77 8999999
Q ss_pred CCCCCcEEecC
Q 034444 84 NLYSFTSFDTF 94 (94)
Q Consensus 84 ~l~~L~~L~ls 94 (94)
.+..|+.+|+|
T Consensus 456 ~lv~Lq~LnlS 466 (565)
T KOG0472|consen 456 SLVRLQTLNLS 466 (565)
T ss_pred hhhhhheeccc
Confidence 99999999885
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.76 E-value=1.9e-06 Score=55.84 Aligned_cols=37 Identities=30% Similarity=0.564 Sum_probs=17.0
Q ss_pred CchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEE
Q 034444 51 IPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSF 91 (94)
Q Consensus 51 iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L 91 (94)
+|+.++++++|+.|.+..|. +- ++|.+++.+++|+.|
T Consensus 142 lp~dvg~lt~lqil~lrdnd---ll-~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 142 LPPDVGKLTNLQILSLRDND---LL-SLPKEIGDLTRLREL 178 (264)
T ss_pred CChhhhhhcceeEEeeccCc---hh-hCcHHHHHHHHHHHH
Confidence 44444444444444444444 33 344444444444433
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.74 E-value=1.1e-05 Score=62.31 Aligned_cols=70 Identities=27% Similarity=0.413 Sum_probs=53.1
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhC
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGN 84 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~ 84 (94)
++++|++++ |.+. .+|..+..+.+|+. ....|.+.+++.+|+++.|.+|+ +. .+|+++..
T Consensus 46 ~L~~l~lsn--------n~~~-~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~---l~-~lP~~~~~ 112 (1081)
T KOG0618|consen 46 KLKSLDLSN--------NQIS-SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR---LQ-SLPASISE 112 (1081)
T ss_pred eeEEeeccc--------cccc-cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch---hh-cCchhHHh
Confidence 378899998 7776 77777766666665 45677778888888888888887 66 78888888
Q ss_pred CCCCcEEecC
Q 034444 85 LYSFTSFDTF 94 (94)
Q Consensus 85 l~~L~~L~ls 94 (94)
+.+|+.||+|
T Consensus 113 lknl~~LdlS 122 (1081)
T KOG0618|consen 113 LKNLQYLDLS 122 (1081)
T ss_pred hhcccccccc
Confidence 8888887765
No 12
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=4.1e-05 Score=38.33 Aligned_cols=38 Identities=37% Similarity=0.564 Sum_probs=27.8
Q ss_pred EEEEEeCCCCCCCCcccceeeeCCccccCCcCcccccCCchhhhcCCCCCeEeccCCCCCcccccCh
Q 034444 13 VIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIHGIQIPIYIASLENLRYLNLSNLSSGRLCGSIP 79 (94)
Q Consensus 13 v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP 79 (94)
++.|++++ |+++ . +|+.+++|++|+.|++++|+ ++ .+|
T Consensus 3 L~~L~l~~--------N~i~-~----------------l~~~l~~l~~L~~L~l~~N~---i~-~i~ 40 (44)
T PF12799_consen 3 LEELDLSN--------NQIT-D----------------LPPELSNLPNLETLNLSNNP---IS-DIS 40 (44)
T ss_dssp -SEEEETS--------SS-S-S----------------HGGHGTTCTTSSEEEETSSC---CS-BEG
T ss_pred ceEEEccC--------CCCc-c----------------cCchHhCCCCCCEEEecCCC---CC-CCc
Confidence 56777777 7776 3 45567788999999999999 87 454
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.70 E-value=2.3e-06 Score=64.46 Aligned_cols=46 Identities=20% Similarity=0.023 Sum_probs=26.4
Q ss_pred CCCcccceeeeCCccccCCcCccc---------ccCCchhhhcCCCCCeEeccCCC
Q 034444 24 YIGSVAELHANYRKSKLVGKHLIH---------GIQIPIYIASLENLRYLNLSNLS 70 (94)
Q Consensus 24 ~~~~~n~l~g~~p~~l~~l~~L~~---------~~~iP~~i~~l~~L~~L~ls~N~ 70 (94)
++++.|+++ .+|+.+.+|+.|+. ...||+.|+++..|+.+..++|.
T Consensus 273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 455667777 67777777766665 22355555555555544444444
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.69 E-value=7.7e-06 Score=61.78 Aligned_cols=66 Identities=23% Similarity=0.134 Sum_probs=52.9
Q ss_pred CCCcccceeeeCCccccCCcCccc---------------------------------ccCCchhhhcCCCCCeEeccCCC
Q 034444 24 YIGSVAELHANYRKSKLVGKHLIH---------------------------------GIQIPIYIASLENLRYLNLSNLS 70 (94)
Q Consensus 24 ~~~~~n~l~g~~p~~l~~l~~L~~---------------------------------~~~iP~~i~~l~~L~~L~ls~N~ 70 (94)
++++.|++. .+||.+..|.+|+. ...+|.++..|.+|..+|+|.|.
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 355667777 67777666655554 33589999999999999999999
Q ss_pred CCcccccChHhhhCCCCCcEEecC
Q 034444 71 SGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 71 ~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
+. .+|+.+.++++|+.|+||
T Consensus 234 ---Lp-~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 234 ---LP-IVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred ---CC-cchHHHhhhhhhheeccC
Confidence 88 899999999999999886
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.64 E-value=9.5e-05 Score=58.73 Aligned_cols=60 Identities=25% Similarity=0.248 Sum_probs=33.8
Q ss_pred cceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 29 AELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
+.+. .++..+..+++|+. ...+| .++.+++|+.|++++|. ....+|..++++++|+.|++
T Consensus 621 s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~---~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 621 SKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCS---SLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCC---CccccchhhhccCCCCEEeC
Confidence 5554 45555555555554 23344 35556666666666655 34456666666666666655
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.60 E-value=4.7e-05 Score=59.14 Aligned_cols=71 Identities=25% Similarity=0.175 Sum_probs=38.2
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhC
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGN 84 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~ 84 (94)
.++.|||++ |.=-+.+|.+++.|-+|++ ...+|..++++..|.+|++..+. ....+|..+..
T Consensus 572 ~LrVLDLs~--------~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~---~l~~~~~i~~~ 640 (889)
T KOG4658|consen 572 LLRVLDLSG--------NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTG---RLESIPGILLE 640 (889)
T ss_pred ceEEEECCC--------CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccc---ccccccchhhh
Confidence 345555554 4433456666666666665 23456666666666666666555 33334444444
Q ss_pred CCCCcEEec
Q 034444 85 LYSFTSFDT 93 (94)
Q Consensus 85 l~~L~~L~l 93 (94)
|.+|++|.+
T Consensus 641 L~~Lr~L~l 649 (889)
T KOG4658|consen 641 LQSLRVLRL 649 (889)
T ss_pred cccccEEEe
Confidence 666666544
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.59 E-value=0.00011 Score=58.31 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=48.1
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLG 83 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~ 83 (94)
+++.++|++ +..-+.+|. +..+++|+. ...+|..++++++|+.|++++|. .-+.+|..+
T Consensus 635 ~Lk~L~Ls~--------~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~---~L~~Lp~~i- 701 (1153)
T PLN03210 635 GLRNIDLRG--------SKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE---NLEILPTGI- 701 (1153)
T ss_pred CCCEEECCC--------CCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC---CcCccCCcC-
Confidence 355556655 543345653 666777766 45688888999999999998866 445788765
Q ss_pred CCCCCcEEecC
Q 034444 84 NLYSFTSFDTF 94 (94)
Q Consensus 84 ~l~~L~~L~ls 94 (94)
++++|+.|+++
T Consensus 702 ~l~sL~~L~Ls 712 (1153)
T PLN03210 702 NLKSLYRLNLS 712 (1153)
T ss_pred CCCCCCEEeCC
Confidence 67777777763
No 18
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.56 E-value=2.4e-05 Score=33.48 Aligned_cols=22 Identities=64% Similarity=0.887 Sum_probs=18.7
Q ss_pred CCCeEeccCCCCCcccccChHhhhCC
Q 034444 60 NLRYLNLSNLSSGRLCGSIPSSLGNL 85 (94)
Q Consensus 60 ~L~~L~ls~N~~~~l~g~iP~~i~~l 85 (94)
+|++||+++|+ ++ .+|+++++|
T Consensus 1 ~L~~Ldls~n~---l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNN---LT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSE---ES-EEGTTTTT-
T ss_pred CccEEECCCCc---CE-eCChhhcCC
Confidence 58999999999 99 899987654
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.49 E-value=3.5e-05 Score=59.69 Aligned_cols=78 Identities=21% Similarity=0.166 Sum_probs=52.3
Q ss_pred CcEEEEEeCCCC----------------CCCCcccceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEecc
Q 034444 11 GRVIELKLGNHF----------------TYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLS 67 (94)
Q Consensus 11 ~~v~~L~l~~~~----------------~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls 67 (94)
.+++.|+|++.. .+++++|.++ .+|.++.++..|+. .-..| ++.+++.|+++|+|
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecc
Confidence 467888888853 0356667777 67777777777766 34566 77888888888888
Q ss_pred CCCCCccc-ccChHhhhCCCCCcEEecC
Q 034444 68 NLSSGRLC-GSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 68 ~N~~~~l~-g~iP~~i~~l~~L~~L~ls 94 (94)
.|+ ++ +.+|..... ++|++||++
T Consensus 461 ~N~---L~~~~l~~~~p~-p~LkyLdlS 484 (1081)
T KOG0618|consen 461 CNN---LSEVTLPEALPS-PNLKYLDLS 484 (1081)
T ss_pred cch---hhhhhhhhhCCC-cccceeecc
Confidence 887 65 234443322 678888774
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.46 E-value=5.8e-05 Score=58.65 Aligned_cols=52 Identities=31% Similarity=0.367 Sum_probs=43.6
Q ss_pred ccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 39 KLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 39 l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
|..++.|+. .+.+|..|+++-+|++|+++... ++ .+|..+++|..|.+||+.
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~---I~-~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG---IS-HLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC---cc-ccchHHHHHHhhheeccc
Confidence 556777776 47799999999999999999988 77 899999999999988863
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.28 E-value=0.00022 Score=54.92 Aligned_cols=52 Identities=15% Similarity=0.035 Sum_probs=32.4
Q ss_pred cceeeeCCccccCCcCccc----ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhC
Q 034444 29 AELHANYRKSKLVGKHLIH----GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGN 84 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~----~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~ 84 (94)
|.++ .+|.....+..|.. ...+|..+.++++|+.+++++|. |+|..|..+..
T Consensus 412 N~Ls-sIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~---Ls~~~~~~L~~ 467 (788)
T PRK15387 412 NRLT-SLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP---LSERTLQALRE 467 (788)
T ss_pred CcCC-CCCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCC---CCchHHHHHHH
Confidence 5555 35543333333322 45677778888888888888888 88777766533
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.18 E-value=0.00037 Score=53.67 Aligned_cols=32 Identities=28% Similarity=0.221 Sum_probs=26.7
Q ss_pred CCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 59 ENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 59 ~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
.+|+.|++++|+ ++ .+|..++++++|+.|+|+
T Consensus 422 ~~L~~L~Ls~Nq---Lt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 422 SGLLSLSVYRNQ---LT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred hhhhhhhhccCc---cc-ccChHHhhccCCCeEECC
Confidence 356778888888 77 799999999999999874
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.18 E-value=0.0009 Score=42.93 Aligned_cols=68 Identities=21% Similarity=0.179 Sum_probs=22.5
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchhh-hcCCCCCeEeccCCCCCcccccCh--Hh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYI-ASLENLRYLNLSNLSSGRLCGSIP--SS 81 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i-~~l~~L~~L~ls~N~~~~l~g~iP--~~ 81 (94)
+++.|++++ |.++ .++ .+..++.|+. ...+.+.+ ..+++|+.|++++|+ +.. +- ..
T Consensus 43 ~L~~L~Ls~--------N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~---I~~-l~~l~~ 108 (175)
T PF14580_consen 43 KLEVLDLSN--------NQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK---ISD-LNELEP 108 (175)
T ss_dssp T--EEE-TT--------S--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS------S-CCCCGG
T ss_pred CCCEEECCC--------CCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc---CCC-hHHhHH
Confidence 456666666 6666 332 3444455544 33454444 356777777777777 542 21 33
Q ss_pred hhCCCCCcEEec
Q 034444 82 LGNLYSFTSFDT 93 (94)
Q Consensus 82 i~~l~~L~~L~l 93 (94)
+..+++|+.|++
T Consensus 109 L~~l~~L~~L~L 120 (175)
T PF14580_consen 109 LSSLPKLRVLSL 120 (175)
T ss_dssp GGG-TT--EEE-
T ss_pred HHcCCCcceeec
Confidence 555666666665
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.17 E-value=0.00039 Score=48.86 Aligned_cols=69 Identities=26% Similarity=0.309 Sum_probs=46.4
Q ss_pred EEEEEeCCCCCCCCcccceeeeCCccccCCc-Cccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhC
Q 034444 13 VIELKLGNHFTYIGSVAELHANYRKSKLVGK-HLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGN 84 (94)
Q Consensus 13 v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~-~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~ 84 (94)
++.+++.+ |.++ .+|+....+. +|+. ...+|..++.+++|+.|++++|+ ++ .+|...+.
T Consensus 118 l~~L~l~~--------n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~---l~-~l~~~~~~ 184 (394)
T COG4886 118 LTSLDLDN--------NNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND---LS-DLPKLLSN 184 (394)
T ss_pred eeEEecCC--------cccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCch---hh-hhhhhhhh
Confidence 56666666 7776 6676665553 5555 34566677788888888888888 77 67776666
Q ss_pred CCCCcEEecC
Q 034444 85 LYSFTSFDTF 94 (94)
Q Consensus 85 l~~L~~L~ls 94 (94)
++.|+.|+++
T Consensus 185 ~~~L~~L~ls 194 (394)
T COG4886 185 LSNLNNLDLS 194 (394)
T ss_pred hhhhhheecc
Confidence 6677666653
No 25
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.15 E-value=0.0001 Score=46.25 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=52.5
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCC-cCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVG-KHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSL 82 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l-~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i 82 (94)
-+++.++|++ |.|. .+|+.+... +.+.. ...+|.++..|+.|+.++++.|. +. ..|..|
T Consensus 53 ~el~~i~ls~--------N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~---l~-~~p~vi 119 (177)
T KOG4579|consen 53 YELTKISLSD--------NGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP---LN-AEPRVI 119 (177)
T ss_pred ceEEEEeccc--------chhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc---cc-cchHHH
Confidence 3577788888 9988 677655332 12222 56799999999999999999999 88 678888
Q ss_pred hCCCCCcEEec
Q 034444 83 GNLYSFTSFDT 93 (94)
Q Consensus 83 ~~l~~L~~L~l 93 (94)
..|.+|..||.
T Consensus 120 ~~L~~l~~Lds 130 (177)
T KOG4579|consen 120 APLIKLDMLDS 130 (177)
T ss_pred HHHHhHHHhcC
Confidence 87777766653
No 26
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.09 E-value=0.00022 Score=53.55 Aligned_cols=70 Identities=20% Similarity=0.121 Sum_probs=46.6
Q ss_pred EEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCC
Q 034444 14 IELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLY 86 (94)
Q Consensus 14 ~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~ 86 (94)
..||+++ |.++..=+..|.++++|+. ...||.......+|+.|+|.+|. ++..-.+++.-++
T Consensus 81 ~~Ldlsn--------Nkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~---I~sv~se~L~~l~ 149 (873)
T KOG4194|consen 81 QTLDLSN--------NKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL---ISSVTSEELSALP 149 (873)
T ss_pred eeeeccc--------cccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccc---cccccHHHHHhHh
Confidence 4455555 8887554566788888876 56677766666777777777777 6643345566666
Q ss_pred CCcEEecC
Q 034444 87 SFTSFDTF 94 (94)
Q Consensus 87 ~L~~L~ls 94 (94)
.|+.||||
T Consensus 150 alrslDLS 157 (873)
T KOG4194|consen 150 ALRSLDLS 157 (873)
T ss_pred hhhhhhhh
Confidence 66666664
No 27
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.00 E-value=0.0005 Score=36.18 Aligned_cols=32 Identities=41% Similarity=0.533 Sum_probs=27.6
Q ss_pred CCCCeEeccCCCCCcccccCh-HhhhCCCCCcEEecC
Q 034444 59 ENLRYLNLSNLSSGRLCGSIP-SSLGNLYSFTSFDTF 94 (94)
Q Consensus 59 ~~L~~L~ls~N~~~~l~g~iP-~~i~~l~~L~~L~ls 94 (94)
++|++|++++|+ ++ .+| ..+..+++|++|+++
T Consensus 1 p~L~~L~l~~n~---l~-~i~~~~f~~l~~L~~L~l~ 33 (61)
T PF13855_consen 1 PNLESLDLSNNK---LT-EIPPDSFSNLPNLETLDLS 33 (61)
T ss_dssp TTESEEEETSST---ES-EECTTTTTTGTTESEEEET
T ss_pred CcCcEEECCCCC---CC-ccCHHHHcCCCCCCEeEcc
Confidence 578999999999 98 566 578999999999985
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.98 E-value=0.00072 Score=43.37 Aligned_cols=68 Identities=22% Similarity=0.222 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCcccc-CCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhh-
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKL-VGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSL- 82 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~-~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i- 82 (94)
+++.|+|.+ |.++ .| +.++ .+.+|+. ...++ .+..+++|+.|++++|+ ++ .+++.+
T Consensus 20 ~~~~L~L~~--------n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~---I~-~i~~~l~ 84 (175)
T PF14580_consen 20 KLRELNLRG--------NQIS-TI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR---IS-SISEGLD 84 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS-------S-CHHHH
T ss_pred ccccccccc--------cccc-cc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC---CC-ccccchH
Confidence 567889999 8887 44 3454 3556655 33343 57778999999999999 88 676655
Q ss_pred hCCCCCcEEecC
Q 034444 83 GNLYSFTSFDTF 94 (94)
Q Consensus 83 ~~l~~L~~L~ls 94 (94)
..+++|+.|+++
T Consensus 85 ~~lp~L~~L~L~ 96 (175)
T PF14580_consen 85 KNLPNLQELYLS 96 (175)
T ss_dssp HH-TT--EEE-T
T ss_pred HhCCcCCEEECc
Confidence 468999999874
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.88 E-value=0.00055 Score=46.33 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=18.1
Q ss_pred hhhcCCCCCeEeccCCCCCccccc----ChHhhhCCCCCcEEec
Q 034444 54 YIASLENLRYLNLSNLSSGRLCGS----IPSSLGNLYSFTSFDT 93 (94)
Q Consensus 54 ~i~~l~~L~~L~ls~N~~~~l~g~----iP~~i~~l~~L~~L~l 93 (94)
.+..+++|+.|++++|. +++. ++..+..+++|++|++
T Consensus 188 ~l~~~~~L~~L~L~~n~---i~~~~~~~l~~~~~~~~~L~~L~l 228 (319)
T cd00116 188 GLKANCNLEVLDLNNNG---LTDEGASALAETLASLKSLEVLNL 228 (319)
T ss_pred HHHhCCCCCEEeccCCc---cChHHHHHHHHHhcccCCCCEEec
Confidence 33444556666666555 5422 2233444555555554
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.78 E-value=0.00065 Score=45.95 Aligned_cols=12 Identities=25% Similarity=0.135 Sum_probs=5.9
Q ss_pred CCCCeEeccCCC
Q 034444 59 ENLRYLNLSNLS 70 (94)
Q Consensus 59 ~~L~~L~ls~N~ 70 (94)
++|+.|++++|.
T Consensus 137 ~~L~~L~L~~n~ 148 (319)
T cd00116 137 PALEKLVLGRNR 148 (319)
T ss_pred CCceEEEcCCCc
Confidence 444444444444
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.75 E-value=0.00049 Score=48.37 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=54.6
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhC
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGN 84 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~ 84 (94)
.++.+++++ |.+. .+|..+..++.|+. ...+|...+.++.|+.|++++|+ ++ .+|..+..
T Consensus 141 nL~~L~l~~--------N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~---i~-~l~~~~~~ 207 (394)
T COG4886 141 NLKELDLSD--------NKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK---IS-DLPPEIEL 207 (394)
T ss_pred hcccccccc--------cchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc---cc-cCchhhhh
Confidence 577888888 9887 77777788888877 45678777789999999999999 87 88887766
Q ss_pred CCCCcEEec
Q 034444 85 LYSFTSFDT 93 (94)
Q Consensus 85 l~~L~~L~l 93 (94)
+..|+.+++
T Consensus 208 ~~~L~~l~~ 216 (394)
T COG4886 208 LSALEELDL 216 (394)
T ss_pred hhhhhhhhh
Confidence 666766654
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.75 E-value=0.00092 Score=48.10 Aligned_cols=41 Identities=29% Similarity=0.327 Sum_probs=28.8
Q ss_pred ccCCch-hhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEE
Q 034444 48 GIQIPI-YIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSF 91 (94)
Q Consensus 48 ~~~iP~-~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L 91 (94)
...||+ .|+.+++|+.||||+|+ ++-.-|+.+..++++..|
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~---Is~I~p~AF~GL~~l~~L 120 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNN---ISFIAPDAFKGLASLLSL 120 (498)
T ss_pred cccCChhhccchhhhceecccccc---hhhcChHhhhhhHhhhHH
Confidence 345555 47788888888888888 876667777776665443
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.74 E-value=0.00027 Score=52.72 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=26.3
Q ss_pred CCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 50 QIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 50 ~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
.+|+++. .-.|..||+|.|+ ++ .||..|.+|+.|++|-|
T Consensus 203 ~lp~El~-~LpLi~lDfScNk---is-~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 203 DLPEELC-SLPLIRLDFSCNK---IS-YLPVDFRKMRHLQVLQL 241 (722)
T ss_pred hCCHHHh-CCceeeeecccCc---ee-ecchhhhhhhhheeeee
Confidence 4555555 3345677778777 66 77877877777777654
No 34
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.57 E-value=0.0013 Score=26.35 Aligned_cols=17 Identities=59% Similarity=0.768 Sum_probs=11.1
Q ss_pred CCCCeEeccCCCCCcccccCh
Q 034444 59 ENLRYLNLSNLSSGRLCGSIP 79 (94)
Q Consensus 59 ~~L~~L~ls~N~~~~l~g~iP 79 (94)
++|+.|++++|+ ++ ++|
T Consensus 1 ~~L~~L~l~~n~---L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR---LT-SLP 17 (17)
T ss_dssp TT-SEEEETSS-----S-SE-
T ss_pred CccCEEECCCCC---CC-CCc
Confidence 479999999999 87 565
No 35
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.44 E-value=0.0011 Score=49.94 Aligned_cols=70 Identities=16% Similarity=0.043 Sum_probs=42.4
Q ss_pred EEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccCh-Hhhh
Q 034444 13 VIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIP-SSLG 83 (94)
Q Consensus 13 v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP-~~i~ 83 (94)
+..|+|+. |+++..-...+..|+.|+. ....++.|.-.++|+.|+|++|+ ++ +++ .++.
T Consensus 271 me~l~L~~--------N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~---i~-~l~~~sf~ 338 (873)
T KOG4194|consen 271 MEHLNLET--------NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR---IT-RLDEGSFR 338 (873)
T ss_pred cceeeccc--------chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc---cc-cCChhHHH
Confidence 55666666 7766332334455555554 33345677777888888888888 77 444 4456
Q ss_pred CCCCCcEEecC
Q 034444 84 NLYSFTSFDTF 94 (94)
Q Consensus 84 ~l~~L~~L~ls 94 (94)
.|+.|+.|+|+
T Consensus 339 ~L~~Le~LnLs 349 (873)
T KOG4194|consen 339 VLSQLEELNLS 349 (873)
T ss_pred HHHHhhhhccc
Confidence 66666666553
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.42 E-value=0.0011 Score=49.65 Aligned_cols=60 Identities=23% Similarity=0.243 Sum_probs=37.2
Q ss_pred cceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
|+++ .+|++++.+..|.. ...+|+.++.+.+|+.|.+..|+ +. .+|++++.|+ |..||+|
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~---l~-~lp~El~~Lp-Li~lDfS 219 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH---LE-DLPEELCSLP-LIRLDFS 219 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh---hh-hCCHHHhCCc-eeeeecc
Confidence 6665 56666665444443 44566677777777777777777 55 5677766553 5556554
No 37
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.23 E-value=0.0095 Score=45.98 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=15.3
Q ss_pred CCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 60 NLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 60 ~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
+|+.|++++|+ ++ .+|..+. .+|+.|++
T Consensus 263 ~L~~L~Ls~N~---L~-~LP~~l~--~sL~~L~L 290 (754)
T PRK15370 263 ALQSLDLFHNK---IS-CLPENLP--EELRYLSV 290 (754)
T ss_pred CCCEEECcCCc---cC-ccccccC--CCCcEEEC
Confidence 55666666666 55 4555442 35666655
No 38
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.22 E-value=0.007 Score=46.67 Aligned_cols=65 Identities=23% Similarity=0.302 Sum_probs=32.8
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCcccc-CCcCccc----ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCC
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKL-VGKHLIH----GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLY 86 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~-~l~~L~~----~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~ 86 (94)
.++.|++++ |.++ .+|..+. +|+.|.. ...+|..+. .+|+.|++++|+ +. .+|..+. .
T Consensus 200 ~L~~L~Ls~--------N~Lt-sLP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~---L~-~LP~~l~--s 262 (754)
T PRK15370 200 QITTLILDN--------NELK-SLPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINR---IT-ELPERLP--S 262 (754)
T ss_pred CCcEEEecC--------CCCC-cCChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCc---cC-cCChhHh--C
Confidence 456677777 6666 4554332 2222211 234554332 356666666666 55 5665543 3
Q ss_pred CCcEEec
Q 034444 87 SFTSFDT 93 (94)
Q Consensus 87 ~L~~L~l 93 (94)
+|+.|++
T Consensus 263 ~L~~L~L 269 (754)
T PRK15370 263 ALQSLDL 269 (754)
T ss_pred CCCEEEC
Confidence 5555554
No 39
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.18 E-value=0.0052 Score=26.87 Aligned_cols=21 Identities=52% Similarity=0.683 Sum_probs=18.0
Q ss_pred CCCCCeEeccCCCCCcccccChHhh
Q 034444 58 LENLRYLNLSNLSSGRLCGSIPSSL 82 (94)
Q Consensus 58 l~~L~~L~ls~N~~~~l~g~iP~~i 82 (94)
+++|+.|+|++|+ ++ .+|+..
T Consensus 1 L~~L~~L~L~~N~---l~-~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQ---LS-SLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc---CC-cCCHHH
Confidence 5789999999999 88 788764
No 40
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.18 E-value=0.0052 Score=26.87 Aligned_cols=21 Identities=52% Similarity=0.683 Sum_probs=18.0
Q ss_pred CCCCCeEeccCCCCCcccccChHhh
Q 034444 58 LENLRYLNLSNLSSGRLCGSIPSSL 82 (94)
Q Consensus 58 l~~L~~L~ls~N~~~~l~g~iP~~i 82 (94)
+++|+.|+|++|+ ++ .+|+..
T Consensus 1 L~~L~~L~L~~N~---l~-~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQ---LS-SLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc---CC-cCCHHH
Confidence 5789999999999 88 788764
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.06 E-value=0.002 Score=46.46 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=57.8
Q ss_pred CCCcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc----ccC---Cc-hhhhcCCCCCeEeccCCCCCcccccChH
Q 034444 9 FTGRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH----GIQ---IP-IYIASLENLRYLNLSNLSSGRLCGSIPS 80 (94)
Q Consensus 9 ~~~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~----~~~---iP-~~i~~l~~L~~L~ls~N~~~~l~g~iP~ 80 (94)
.-.+++.|+|++ |.+++.-+..|..+..++. ... +- ..|..+..|+.|+|..|+ ++-.-|.
T Consensus 272 ~L~~L~~lnlsn--------N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~---it~~~~~ 340 (498)
T KOG4237|consen 272 KLPNLRKLNLSN--------NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ---ITTVAPG 340 (498)
T ss_pred hcccceEeccCC--------CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe---eEEEecc
Confidence 346789999999 9999777777777777776 112 22 247789999999999999 9977788
Q ss_pred hhhCCCCCcEEec
Q 034444 81 SLGNLYSFTSFDT 93 (94)
Q Consensus 81 ~i~~l~~L~~L~l 93 (94)
.+..+.+|..|+|
T Consensus 341 aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 341 AFQTLFSLSTLNL 353 (498)
T ss_pred cccccceeeeeeh
Confidence 8888888888765
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.45 E-value=0.0054 Score=43.21 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=10.0
Q ss_pred hhcCCCCCeEeccCCC
Q 034444 55 IASLENLRYLNLSNLS 70 (94)
Q Consensus 55 i~~l~~L~~L~ls~N~ 70 (94)
+..+++|+.||||+|.
T Consensus 325 La~L~~L~~LDLS~N~ 340 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNL 340 (490)
T ss_pred hhhcccceEeecccch
Confidence 5555666666666665
No 43
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.09 E-value=0.0084 Score=25.71 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=15.7
Q ss_pred CCCCCeEeccCCCCCcccccChHhhh
Q 034444 58 LENLRYLNLSNLSSGRLCGSIPSSLG 83 (94)
Q Consensus 58 l~~L~~L~ls~N~~~~l~g~iP~~i~ 83 (94)
+++|+.|++++|+ ++..-...|+
T Consensus 1 ~~~L~~L~l~~n~---i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQ---ITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSB---EHHHHHHHHH
T ss_pred CCCCCEEEccCCc---CCHHHHHHhC
Confidence 4789999999999 8876555554
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.74 E-value=0.003 Score=39.75 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=35.8
Q ss_pred ccCCchhhhcC-CCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 48 GIQIPIYIASL-ENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 48 ~~~iP~~i~~l-~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
....|+.+... +-++.+++++|. ++ .+|.+++.++.|+.++++
T Consensus 65 fk~fp~kft~kf~t~t~lNl~~ne---is-dvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 65 FKKFPKKFTIKFPTATTLNLANNE---IS-DVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhCCHHHhhccchhhhhhcchhh---hh-hchHHHhhhHHhhhcccc
Confidence 44678877554 589999999999 88 899999999999988763
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.08 E-value=0.074 Score=40.90 Aligned_cols=70 Identities=19% Similarity=0.072 Sum_probs=44.2
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc---------ccCCchhhhcCCCCCeEeccCCCCCcccccCh--
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH---------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIP-- 79 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~---------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP-- 79 (94)
..+.+||+++ .+++ .+ ..+++|++|+. ....=..+.+|++|+.||+|... .. ..+
T Consensus 173 pNL~sLDIS~--------TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~---~~-~~~~i 238 (699)
T KOG3665|consen 173 PNLRSLDISG--------TNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK---NN-DDTKI 238 (699)
T ss_pred CccceeecCC--------CCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc---cc-cchHH
Confidence 4466777777 6665 23 56777777777 11222357788999999998766 43 222
Q ss_pred -Hh----hhCCCCCcEEecC
Q 034444 80 -SS----LGNLYSFTSFDTF 94 (94)
Q Consensus 80 -~~----i~~l~~L~~L~ls 94 (94)
.. -..|++|+.||.|
T Consensus 239 i~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 239 IEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred HHHHHHhcccCccccEEecC
Confidence 11 1347888888865
No 46
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.97 E-value=0.059 Score=23.92 Aligned_cols=18 Identities=44% Similarity=0.621 Sum_probs=15.7
Q ss_pred CCCCeEeccCCCCCcccccChH
Q 034444 59 ENLRYLNLSNLSSGRLCGSIPS 80 (94)
Q Consensus 59 ~~L~~L~ls~N~~~~l~g~iP~ 80 (94)
.+|+.|++++|+ ++ ++|+
T Consensus 2 ~~L~~L~vs~N~---Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQ---LT-SLPE 19 (26)
T ss_pred cccceeecCCCc---cc-cCcc
Confidence 478999999999 88 7886
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=91.74 E-value=0.089 Score=37.28 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=31.1
Q ss_pred CCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 50 QIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 50 ~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
.|-++..-++.++.|++|+|. +. .+ ..++.+++|+.||||
T Consensus 298 ~iDESvKL~Pkir~L~lS~N~---i~-~v-~nLa~L~~L~~LDLS 337 (490)
T KOG1259|consen 298 QIDESVKLAPKLRRLILSQNR---IR-TV-QNLAELPQLQLLDLS 337 (490)
T ss_pred hhhhhhhhccceeEEeccccc---ee-ee-hhhhhcccceEeecc
Confidence 455566667899999999999 76 44 348888999999986
No 48
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.67 E-value=0.0095 Score=40.56 Aligned_cols=69 Identities=16% Similarity=0.025 Sum_probs=45.0
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLG 83 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~ 83 (94)
.+++.||++. |++. .+-..+..++.|.. ..-+|..+++...++.+++.+|. .+ ..|.+.+
T Consensus 42 kr~tvld~~s--------~r~v-n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~---~~-~~p~s~~ 108 (326)
T KOG0473|consen 42 KRVTVLDLSS--------NRLV-NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN---HS-QQPKSQK 108 (326)
T ss_pred ceeeeehhhh--------hHHH-hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc---hh-hCCcccc
Confidence 4688888888 7765 33333444433332 34567777777777777777777 66 6777777
Q ss_pred CCCCCcEEe
Q 034444 84 NLYSFTSFD 92 (94)
Q Consensus 84 ~l~~L~~L~ 92 (94)
..+.+++++
T Consensus 109 k~~~~k~~e 117 (326)
T KOG0473|consen 109 KEPHPKKNE 117 (326)
T ss_pred ccCCcchhh
Confidence 777766654
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.34 E-value=0.18 Score=34.43 Aligned_cols=40 Identities=28% Similarity=0.266 Sum_probs=22.9
Q ss_pred cCCchhhhcCCCCCeEeccCCCCCcccccChHhh---hCCCCCcEEec
Q 034444 49 IQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSL---GNLYSFTSFDT 93 (94)
Q Consensus 49 ~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i---~~l~~L~~L~l 93 (94)
+.++.-...+++|++++++.|+ +. +++.+ ..+.+|..||+
T Consensus 81 ~~l~vl~e~~P~l~~l~ls~Nk---i~--~lstl~pl~~l~nL~~Ldl 123 (260)
T KOG2739|consen 81 GGLEVLAEKAPNLKVLNLSGNK---IK--DLSTLRPLKELENLKSLDL 123 (260)
T ss_pred ccceehhhhCCceeEEeecCCc---cc--cccccchhhhhcchhhhhc
Confidence 3444445556888888888887 54 34333 33445555554
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.08 E-value=0.21 Score=34.05 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=22.5
Q ss_pred cCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 57 SLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 57 ~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
.|++|+.|+++.|. .+.++.++.-...+++|++++++
T Consensus 63 ~Lp~LkkL~lsdn~-~~~~~~l~vl~e~~P~l~~l~ls 99 (260)
T KOG2739|consen 63 KLPKLKKLELSDNY-RRVSGGLEVLAEKAPNLKVLNLS 99 (260)
T ss_pred CcchhhhhcccCCc-ccccccceehhhhCCceeEEeec
Confidence 45677777777772 11555555555555777777664
No 51
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.17 E-value=0.45 Score=21.00 Aligned_cols=13 Identities=46% Similarity=0.503 Sum_probs=11.8
Q ss_pred CCCCCeEeccCCC
Q 034444 58 LENLRYLNLSNLS 70 (94)
Q Consensus 58 l~~L~~L~ls~N~ 70 (94)
+++|+.|+++.|+
T Consensus 1 L~~L~~L~L~~Nk 13 (26)
T smart00365 1 LTNLEELDLSQNK 13 (26)
T ss_pred CCccCEEECCCCc
Confidence 4789999999999
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.15 E-value=0.47 Score=36.62 Aligned_cols=38 Identities=29% Similarity=0.271 Sum_probs=22.2
Q ss_pred hhhcCCCCCeEeccCCCCCcccc-cChHhhhCCCCCcEEecC
Q 034444 54 YIASLENLRYLNLSNLSSGRLCG-SIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 54 ~i~~l~~L~~L~ls~N~~~~l~g-~iP~~i~~l~~L~~L~ls 94 (94)
.++++++|+.|-+.+=. +.- ..-..+-+|++|++||+|
T Consensus 190 GIS~LknLq~L~mrnLe---~e~~~~l~~LF~L~~L~vLDIS 228 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLE---FESYQDLIDLFNLKKLRVLDIS 228 (699)
T ss_pred HHhccccHHHHhccCCC---CCchhhHHHHhcccCCCeeecc
Confidence 46666666666555544 331 112346677888888876
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=87.91 E-value=0.52 Score=34.41 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=8.9
Q ss_pred CCCCeEeccCCC
Q 034444 59 ENLRYLNLSNLS 70 (94)
Q Consensus 59 ~~L~~L~ls~N~ 70 (94)
++|++|++++|.
T Consensus 156 sSLk~L~Is~c~ 167 (426)
T PRK15386 156 PSLKTLSLTGCS 167 (426)
T ss_pred CcccEEEecCCC
Confidence 367888887776
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=87.47 E-value=0.42 Score=33.51 Aligned_cols=71 Identities=10% Similarity=0.140 Sum_probs=46.8
Q ss_pred cEEEEEeCCCCCCCCcccceeee----CCccccCCcCccc-------cc----CCc-------hhhhcCCCCCeEeccCC
Q 034444 12 RVIELKLGNHFTYIGSVAELHAN----YRKSKLVGKHLIH-------GI----QIP-------IYIASLENLRYLNLSNL 69 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~----~p~~l~~l~~L~~-------~~----~iP-------~~i~~l~~L~~L~ls~N 69 (94)
.++.++|++ |.+... +...|.+-.+|+. +| .+| +.+-.+++|+..+||.|
T Consensus 31 ~~~evdLSG--------NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 31 ELVEVDLSG--------NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred ceeEEeccC--------CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 478899999 887643 2233444455554 22 233 34456899999999999
Q ss_pred CCCcccccChHh----hhCCCCCcEEec
Q 034444 70 SSGRLCGSIPSS----LGNLYSFTSFDT 93 (94)
Q Consensus 70 ~~~~l~g~iP~~----i~~l~~L~~L~l 93 (94)
- |.-+.|+. |++-+.|.+|.+
T Consensus 103 A---fg~~~~e~L~d~is~~t~l~HL~l 127 (388)
T COG5238 103 A---FGSEFPEELGDLISSSTDLVHLKL 127 (388)
T ss_pred c---cCcccchHHHHHHhcCCCceeEEe
Confidence 8 87777755 455677777765
No 55
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.39 E-value=0.48 Score=20.99 Aligned_cols=12 Identities=50% Similarity=0.548 Sum_probs=11.0
Q ss_pred CCCCeEeccCCC
Q 034444 59 ENLRYLNLSNLS 70 (94)
Q Consensus 59 ~~L~~L~ls~N~ 70 (94)
++|++|||++|.
T Consensus 2 ~~L~~LdL~~N~ 13 (28)
T smart00368 2 PSLRELDLSNNK 13 (28)
T ss_pred CccCEEECCCCC
Confidence 579999999999
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=87.15 E-value=0.34 Score=34.70 Aligned_cols=34 Identities=35% Similarity=0.425 Sum_probs=16.5
Q ss_pred hhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 55 IASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 55 i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
+..++.|+.|++++|. ++ .+ ..+..++.|+.+++
T Consensus 136 l~~l~~L~~L~l~~N~---i~-~~-~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 136 LSTLTLLKELNLSGNL---IS-DI-SGLESLKSLKLLDL 169 (414)
T ss_pred hhhccchhhheeccCc---ch-hc-cCCccchhhhcccC
Confidence 4445556666666666 44 22 22333445554444
No 57
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=85.92 E-value=0.34 Score=35.65 Aligned_cols=51 Identities=25% Similarity=0.281 Sum_probs=32.5
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCC--ccccCCcCccc---------ccCCchh-----hhcCCCCCeEeccCCC
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYR--KSKLVGKHLIH---------GIQIPIY-----IASLENLRYLNLSNLS 70 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p--~~l~~l~~L~~---------~~~iP~~-----i~~l~~L~~L~ls~N~ 70 (94)
.+++.|||++ |++- .++ ...+.++.|.. +-.+|+. -..+++|++|+++.|+
T Consensus 246 ~~L~~LdLs~--------N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 246 QTLQELDLSN--------NNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hHHhhccccC--------Cccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 3467777777 7765 344 34555555554 1123433 3457999999999999
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=85.40 E-value=0.1 Score=40.74 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=6.3
Q ss_pred hhCCCCCcEEec
Q 034444 82 LGNLYSFTSFDT 93 (94)
Q Consensus 82 i~~l~~L~~L~l 93 (94)
|.+|.+|+.||+
T Consensus 250 ie~LksL~~LDl 261 (1096)
T KOG1859|consen 250 IENLKSLYGLDL 261 (1096)
T ss_pred HHhhhhhhccch
Confidence 445555555554
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.49 E-value=0.44 Score=33.46 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=47.7
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc----ccCCch-----hhhcCCCCCeEeccCCCCCcccccChHh-
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH----GIQIPI-----YIASLENLRYLNLSNLSSGRLCGSIPSS- 81 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~----~~~iP~-----~i~~l~~L~~L~ls~N~~~~l~g~iP~~- 81 (94)
.+..|.|+- |.++ .+ ..+..++.|+. -..|++ .+.++++|+.|-|..|. .+|+-+..
T Consensus 42 ~lEVLsLSv--------NkIs-sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP---Cc~~ag~nY 108 (388)
T KOG2123|consen 42 LLEVLSLSV--------NKIS-SL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP---CCGEAGQNY 108 (388)
T ss_pred cceeEEeec--------cccc-cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC---cccccchhH
Confidence 356666666 8877 33 33566777766 445553 46789999999999999 78876643
Q ss_pred ----hhCCCCCcEEe
Q 034444 82 ----LGNLYSFTSFD 92 (94)
Q Consensus 82 ----i~~l~~L~~L~ 92 (94)
+..|++|+.||
T Consensus 109 R~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 109 RRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHcccchhcc
Confidence 56678888776
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=81.23 E-value=0.38 Score=37.79 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=15.6
Q ss_pred CCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 58 LENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 58 l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
++.|+.|||++|+ |+. . +.+..++.|++|||
T Consensus 186 l~ale~LnLshNk---~~~-v-~~Lr~l~~LkhLDl 216 (1096)
T KOG1859|consen 186 LPALESLNLSHNK---FTK-V-DNLRRLPKLKHLDL 216 (1096)
T ss_pred HHHhhhhccchhh---hhh-h-HHHHhccccccccc
Confidence 4455555555555 542 1 24455555555554
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=80.43 E-value=0.39 Score=34.26 Aligned_cols=72 Identities=17% Similarity=0.121 Sum_probs=45.5
Q ss_pred CcEEEEEeCCCCCCCCcccceeee----CCccccCCcCccc-------cc----CCchhh-------hcCCCCCeEeccC
Q 034444 11 GRVIELKLGNHFTYIGSVAELHAN----YRKSKLVGKHLIH-------GI----QIPIYI-------ASLENLRYLNLSN 68 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~----~p~~l~~l~~L~~-------~~----~iP~~i-------~~l~~L~~L~ls~ 68 (94)
..++.|+|++ |.+.-. +-+.+.+.+.|+. .| .+|+.+ -..++|+++|||.
T Consensus 30 ~s~~~l~lsg--------nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 30 DSLTKLDLSG--------NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred CceEEEeccC--------CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 4589999999 887532 3344555566665 23 355432 3457999999999
Q ss_pred CCCCcccccChH----hhhCCCCCcEEec
Q 034444 69 LSSGRLCGSIPS----SLGNLYSFTSFDT 93 (94)
Q Consensus 69 N~~~~l~g~iP~----~i~~l~~L~~L~l 93 (94)
|- |.-.-+. -|.+++.|++|.|
T Consensus 102 NA---~G~~g~~~l~~ll~s~~~L~eL~L 127 (382)
T KOG1909|consen 102 NA---FGPKGIRGLEELLSSCTDLEELYL 127 (382)
T ss_pred cc---cCccchHHHHHHHHhccCHHHHhh
Confidence 98 6533333 3456677776654
No 62
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=78.36 E-value=1.1 Score=32.05 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=21.3
Q ss_pred hhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 55 IASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 55 i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
+..+++|++|++++|. ++ .+. .+..++.|+.|++
T Consensus 114 l~~~~~L~~L~ls~N~---I~-~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNK---IT-KLE-GLSTLTLLKELNL 147 (414)
T ss_pred hhhhhcchheeccccc---cc-ccc-chhhccchhhhee
Confidence 5667888888888887 65 332 2445555665554
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=74.63 E-value=4.8 Score=27.01 Aligned_cols=35 Identities=29% Similarity=0.261 Sum_probs=18.9
Q ss_pred hhcCCCCCeEeccCCCCCcccccCh----HhhhCCCCCcEEec
Q 034444 55 IASLENLRYLNLSNLSSGRLCGSIP----SSLGNLYSFTSFDT 93 (94)
Q Consensus 55 i~~l~~L~~L~ls~N~~~~l~g~iP----~~i~~l~~L~~L~l 93 (94)
+..++.|++|.+-.|. .+ .-+ ..+..+++|++||+
T Consensus 109 La~~p~L~~Ltll~Np---v~-~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNP---VE-HKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred hccCCccceeeecCCc---hh-cccCceeEEEEecCcceEeeh
Confidence 3445666666666665 43 111 12455667777765
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=68.57 E-value=3.3 Score=29.20 Aligned_cols=22 Identities=9% Similarity=0.222 Sum_probs=15.0
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCcccc
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKL 40 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~ 40 (94)
+++..++|+. |.|....|+.++
T Consensus 92 p~l~~v~LSD--------NAfg~~~~e~L~ 113 (388)
T COG5238 92 PRLQKVDLSD--------NAFGSEFPEELG 113 (388)
T ss_pred Ccceeeeccc--------cccCcccchHHH
Confidence 4567777777 888766666544
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.16 E-value=1.4 Score=31.29 Aligned_cols=53 Identities=21% Similarity=0.154 Sum_probs=28.5
Q ss_pred CCcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc---cc------CCchhhhcCCCCCeEeccCCC
Q 034444 10 TGRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH---GI------QIPIYIASLENLRYLNLSNLS 70 (94)
Q Consensus 10 ~~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~---~~------~iP~~i~~l~~L~~L~ls~N~ 70 (94)
-++++.|+++. |.++..|-..-..+.+|+. .| ..-.....++.++.|.+|.|+
T Consensus 96 lP~l~~LNls~--------N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 96 LPALTTLNLSC--------NSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred CccceEeeccC--------CcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 35677777777 8776433211122333333 11 122345667777777777774
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=66.58 E-value=4.1 Score=29.86 Aligned_cols=8 Identities=13% Similarity=0.032 Sum_probs=4.6
Q ss_pred EEEEEeCC
Q 034444 13 VIELKLGN 20 (94)
Q Consensus 13 v~~L~l~~ 20 (94)
...|++++
T Consensus 54 l~~L~Is~ 61 (426)
T PRK15386 54 SGRLYIKD 61 (426)
T ss_pred CCEEEeCC
Confidence 44566666
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.02 E-value=4.9 Score=28.70 Aligned_cols=18 Identities=44% Similarity=0.438 Sum_probs=13.5
Q ss_pred hhcCCCCCeEeccCCCCCccc
Q 034444 55 IASLENLRYLNLSNLSSGRLC 75 (94)
Q Consensus 55 i~~l~~L~~L~ls~N~~~~l~ 75 (94)
..+|+.|++|+++.|+ +.
T Consensus 93 le~lP~l~~LNls~N~---L~ 110 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNS---LS 110 (418)
T ss_pred HhcCccceEeeccCCc---CC
Confidence 3567888888888888 65
No 68
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=61.18 E-value=4.5 Score=30.01 Aligned_cols=15 Identities=40% Similarity=0.430 Sum_probs=7.7
Q ss_pred hcCCCCCeEeccCCC
Q 034444 56 ASLENLRYLNLSNLS 70 (94)
Q Consensus 56 ~~l~~L~~L~ls~N~ 70 (94)
.++++|+.|+++.|+
T Consensus 169 eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNR 183 (505)
T ss_pred Hhcccchhccccccc
Confidence 345555555555555
No 69
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=59.95 E-value=7.7 Score=16.44 Aligned_cols=13 Identities=46% Similarity=0.529 Sum_probs=10.7
Q ss_pred CCCCCeEeccCCC
Q 034444 58 LENLRYLNLSNLS 70 (94)
Q Consensus 58 l~~L~~L~ls~N~ 70 (94)
+++|+.|+++++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3689999999876
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.70 E-value=2.1 Score=28.50 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=21.9
Q ss_pred CCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 58 LENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 58 l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
.++|+.|+++.|. +++..=-..+..+++|+.|++
T Consensus 150 ~~~L~~L~lsgC~--rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 150 APSLQDLDLSGCP--RITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred ccchheeeccCCC--eechhHHHHHHHhhhhHHHHh
Confidence 4789999999877 144222245666777766654
No 71
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=57.11 E-value=4.2 Score=29.02 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=21.4
Q ss_pred hhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 55 IASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 55 i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
++++.+|+.|.+.+++ +...|-..|+.-.+|+.||++
T Consensus 206 Ls~C~kLk~lSlEg~~---LdD~I~~~iAkN~~L~~lnls 242 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLR---LDDPIVNTIAKNSNLVRLNLS 242 (419)
T ss_pred HHHHHhhhhccccccc---cCcHHHHHHhccccceeeccc
Confidence 4455566666666666 555555555555566655553
No 72
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=52.56 E-value=3.3 Score=29.77 Aligned_cols=52 Identities=13% Similarity=0.010 Sum_probs=31.0
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccc----cCCcCccc-----ccC----------------CchhhhcCCCCCeEe
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSK----LVGKHLIH-----GIQ----------------IPIYIASLENLRYLN 65 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l----~~l~~L~~-----~~~----------------iP~~i~~l~~L~~L~ 65 (94)
++++.++|+. |.|.-.-++.+ ..+..|+. .|- .-.-+.+-+.|+++.
T Consensus 92 ~~L~~ldLSD--------NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 92 PKLQKLDLSD--------NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFI 163 (382)
T ss_pred CceeEeeccc--------cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence 4788899998 98875444433 33344443 111 112244567888888
Q ss_pred ccCCC
Q 034444 66 LSNLS 70 (94)
Q Consensus 66 ls~N~ 70 (94)
..+|+
T Consensus 164 ~~rNr 168 (382)
T KOG1909|consen 164 CGRNR 168 (382)
T ss_pred eeccc
Confidence 88888
No 73
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=41.54 E-value=26 Score=23.59 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=23.4
Q ss_pred CCchhhhc-CCCCCeEeccCCCCCcccccChH--hhhCCCCCcEEe
Q 034444 50 QIPIYIAS-LENLRYLNLSNLSSGRLCGSIPS--SLGNLYSFTSFD 92 (94)
Q Consensus 50 ~iP~~i~~-l~~L~~L~ls~N~~~~l~g~iP~--~i~~l~~L~~L~ 92 (94)
.|-+.+.. +++|+.|.+.+|+ +. ++-+ -++.+++|++|-
T Consensus 78 ~I~p~L~~~~p~l~~L~LtnNs---i~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 78 RIDPDLDTFLPNLKTLILTNNS---IQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred eeccchhhhccccceEEecCcc---hh-hhhhcchhccCCccceee
Confidence 44444443 4678888888888 54 3321 245666776664
No 74
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=39.02 E-value=16 Score=16.06 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=7.6
Q ss_pred hhCCCCCcEEec
Q 034444 82 LGNLYSFTSFDT 93 (94)
Q Consensus 82 i~~l~~L~~L~l 93 (94)
|..+++|+.||.
T Consensus 9 i~~LPqL~~LD~ 20 (26)
T smart00446 9 IRLLPQLRKLDX 20 (26)
T ss_pred HHHCCccceecc
Confidence 556667777663
Done!