Query 034444
Match_columns 94
No_of_seqs 190 out of 1217
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 04:06:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.6 1.7E-15 6E-20 102.0 7.3 82 1-93 38-132 (313)
2 4eco_A Uncharacterized protein 99.5 3.9E-14 1.3E-18 103.3 6.2 81 2-94 73-257 (636)
3 3rgz_A Protein brassinosteroid 99.4 5.5E-14 1.9E-18 104.2 4.9 81 1-94 42-134 (768)
4 4ecn_A Leucine-rich repeat pro 99.4 2.3E-13 7.8E-18 102.9 5.6 81 2-94 315-499 (876)
5 3rgz_A Protein brassinosteroid 99.4 7E-13 2.4E-17 98.2 6.4 73 11-94 632-712 (768)
6 4fcg_A Uncharacterized protein 99.2 3.4E-12 1.2E-16 86.5 2.2 81 1-94 63-158 (328)
7 1ogq_A PGIP-2, polygalacturona 99.1 1.3E-10 4.5E-15 78.1 5.9 62 29-93 111-181 (313)
8 4fcg_A Uncharacterized protein 99.1 2.8E-10 9.6E-15 77.1 6.4 71 12-93 230-308 (328)
9 2z81_A CD282 antigen, TOLL-lik 99.0 4.5E-10 1.5E-14 79.6 7.2 73 11-94 26-106 (549)
10 1w8a_A SLIT protein; signaling 99.0 2E-10 6.9E-15 72.4 4.7 62 29-93 64-133 (192)
11 3g39_A Variable lymphocyte rec 99.0 9.4E-10 3.2E-14 68.3 6.9 73 11-94 30-110 (170)
12 3e6j_A Variable lymphocyte rec 99.0 1E-09 3.5E-14 70.9 6.9 82 1-93 21-119 (229)
13 2o6r_A Variable lymphocyte rec 99.0 1.3E-09 4.6E-14 67.5 6.8 82 1-93 9-107 (177)
14 1w8a_A SLIT protein; signaling 99.0 9.7E-10 3.3E-14 69.3 5.9 72 12-94 30-110 (192)
15 2o6s_A Variable lymphocyte rec 99.0 1.8E-09 6.2E-14 68.3 6.8 82 1-93 9-107 (208)
16 2je0_A Acidic leucine-rich nuc 98.9 1.4E-09 4.7E-14 65.6 5.2 40 51-93 80-120 (149)
17 2r9u_A Variable lymphocyte rec 98.9 1.9E-09 6.3E-14 67.3 5.8 71 12-94 34-113 (174)
18 3v47_A TOLL-like receptor 5B a 98.9 2.3E-09 8E-14 74.4 6.6 73 11-94 30-111 (455)
19 2v70_A SLIT-2, SLIT homolog 2 98.9 1.9E-09 6.5E-14 69.3 5.7 39 52-93 122-160 (220)
20 2v70_A SLIT-2, SLIT homolog 2 98.9 2.8E-09 9.5E-14 68.5 6.4 63 29-94 67-137 (220)
21 2wfh_A SLIT homolog 2 protein 98.9 2.5E-09 8.6E-14 67.6 5.7 71 12-94 32-110 (193)
22 4eco_A Uncharacterized protein 98.9 1.1E-09 3.9E-14 79.8 4.6 62 29-94 193-281 (636)
23 2v9t_B SLIT homolog 2 protein 98.9 4.6E-09 1.6E-13 67.5 6.4 64 27-93 64-135 (220)
24 3j0a_A TOLL-like receptor 5; m 98.9 1.6E-09 5.6E-14 81.0 4.6 74 10-94 23-105 (844)
25 2ell_A Acidic leucine-rich nuc 98.9 1.9E-09 6.4E-14 66.2 4.0 40 51-94 87-128 (168)
26 2v9t_B SLIT homolog 2 protein 98.9 7.7E-09 2.6E-13 66.4 7.0 72 11-94 32-112 (220)
27 1dce_A Protein (RAB geranylger 98.9 4.7E-09 1.6E-13 76.1 6.5 70 12-94 464-541 (567)
28 4b8c_D Glucose-repressible alc 98.8 1.1E-09 3.9E-14 81.2 2.8 78 11-93 224-323 (727)
29 4b8c_D Glucose-repressible alc 98.8 3.8E-09 1.3E-13 78.4 5.3 66 24-94 229-301 (727)
30 4g8a_A TOLL-like receptor 4; l 98.8 6.8E-09 2.3E-13 74.1 6.3 73 11-94 52-132 (635)
31 4g8a_A TOLL-like receptor 4; l 98.8 8.3E-09 2.8E-13 73.6 6.3 72 12-94 495-575 (635)
32 3vq2_A TLR4, TOLL-like recepto 98.8 7.4E-09 2.5E-13 74.3 5.5 72 11-93 32-111 (606)
33 2ifg_A High affinity nerve gro 98.8 1.5E-08 5.1E-13 68.5 6.7 68 13-93 33-110 (347)
34 3t6q_A CD180 antigen; protein- 98.8 8.2E-09 2.8E-13 74.0 5.6 73 11-94 33-113 (606)
35 3zyi_A Leucine-rich repeat-con 98.8 1.3E-08 4.4E-13 71.2 6.4 73 11-94 75-155 (452)
36 2wfh_A SLIT homolog 2 protein 98.8 1.4E-08 4.9E-13 64.1 6.1 73 11-94 54-134 (193)
37 4ezg_A Putative uncharacterize 98.8 1.3E-08 4.6E-13 64.0 5.8 61 29-93 98-166 (197)
38 2je0_A Acidic leucine-rich nuc 98.8 1.2E-08 4E-13 61.5 5.1 37 54-93 59-95 (149)
39 3e6j_A Variable lymphocyte rec 98.8 1.8E-08 6E-13 65.0 6.3 41 50-93 126-166 (229)
40 1wwl_A Monocyte differentiatio 98.8 5.4E-09 1.8E-13 70.0 3.8 73 11-94 95-181 (312)
41 3v47_A TOLL-like receptor 5B a 98.8 1.5E-08 5.1E-13 70.4 6.0 62 29-93 309-378 (455)
42 2z80_A TOLL-like receptor 2, v 98.7 3E-08 1E-12 67.2 7.2 71 12-94 53-132 (353)
43 1dce_A Protein (RAB geranylger 98.7 1.4E-08 4.9E-13 73.6 6.0 68 12-94 442-516 (567)
44 3vq2_A TLR4, TOLL-like recepto 98.7 1.6E-08 5.5E-13 72.5 6.1 63 29-94 90-161 (606)
45 3m19_A Variable lymphocyte rec 98.7 1.9E-08 6.4E-13 65.4 5.9 71 12-93 36-114 (251)
46 2id5_A Lingo-1, leucine rich r 98.7 2E-08 6.8E-13 70.4 6.4 70 12-93 33-111 (477)
47 4ecn_A Leucine-rich repeat pro 98.7 6.3E-09 2.1E-13 78.9 3.4 73 12-94 449-556 (876)
48 2ell_A Acidic leucine-rich nuc 98.7 3.5E-08 1.2E-12 60.4 6.1 38 53-93 114-154 (168)
49 3m19_A Variable lymphocyte rec 98.7 3.1E-08 1.1E-12 64.4 6.0 37 55-94 127-163 (251)
50 2o6r_A Variable lymphocyte rec 98.7 3.5E-08 1.2E-12 61.0 5.8 72 11-94 52-132 (177)
51 2ifg_A High affinity nerve gro 98.7 2.1E-08 7.1E-13 67.7 4.9 67 15-94 12-88 (347)
52 2z62_A TOLL-like receptor 4, v 98.7 4.1E-08 1.4E-12 64.4 6.1 63 29-94 86-157 (276)
53 2z7x_B TOLL-like receptor 1, v 98.7 1.6E-08 5.4E-13 71.4 4.3 61 29-94 55-123 (520)
54 2z66_A Variable lymphocyte rec 98.7 2.7E-08 9.1E-13 66.1 5.2 62 29-93 136-206 (306)
55 2o6s_A Variable lymphocyte rec 98.7 4.9E-08 1.7E-12 61.7 6.0 36 55-93 120-155 (208)
56 2z63_A TOLL-like receptor 4, v 98.7 2.6E-08 8.9E-13 70.7 5.2 62 29-93 431-501 (570)
57 2z81_A CD282 antigen, TOLL-lik 98.7 2.5E-08 8.6E-13 70.7 5.1 73 11-94 50-131 (549)
58 3rfs_A Internalin B, repeat mo 98.6 5.3E-08 1.8E-12 64.0 6.0 36 55-93 153-188 (272)
59 3rfs_A Internalin B, repeat mo 98.6 5.4E-08 1.8E-12 64.0 6.0 72 12-94 134-213 (272)
60 1ozn_A Reticulon 4 receptor; N 98.6 6.6E-08 2.3E-12 63.6 6.3 63 29-94 163-233 (285)
61 1a9n_A U2A', U2A'; complex (nu 98.6 4.3E-08 1.5E-12 60.7 5.1 34 56-93 85-120 (176)
62 4ezg_A Putative uncharacterize 98.6 4.5E-08 1.5E-12 61.6 5.1 70 12-94 67-144 (197)
63 2z7x_B TOLL-like receptor 1, v 98.6 3.4E-08 1.2E-12 69.7 5.0 73 11-94 324-407 (520)
64 1xku_A Decorin; proteoglycan, 98.6 5.1E-08 1.7E-12 65.4 5.7 71 12-94 193-271 (330)
65 1ozn_A Reticulon 4 receptor; N 98.6 7.6E-08 2.6E-12 63.4 6.3 62 29-93 66-136 (285)
66 2xot_A Amphoterin-induced prot 98.6 5.5E-08 1.9E-12 66.4 5.7 36 55-93 108-143 (361)
67 3oja_B Anopheles plasmodium-re 98.6 5.9E-08 2E-12 70.1 6.1 63 29-94 109-179 (597)
68 3g39_A Variable lymphocyte rec 98.6 8.5E-08 2.9E-12 59.3 6.0 68 13-94 11-86 (170)
69 2z62_A TOLL-like receptor 4, v 98.6 6E-08 2.1E-12 63.6 5.5 71 12-93 29-107 (276)
70 2r9u_A Variable lymphocyte rec 98.6 8.9E-08 3.1E-12 59.6 6.0 66 14-94 15-89 (174)
71 2z66_A Variable lymphocyte rec 98.6 8.6E-08 2.9E-12 63.6 6.1 62 29-93 185-255 (306)
72 3o6n_A APL1; leucine-rich repe 98.6 8.3E-08 2.8E-12 65.7 6.0 63 29-94 103-173 (390)
73 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 5.1E-08 1.7E-12 69.7 5.1 60 29-93 86-153 (562)
74 3zyj_A Leucine-rich repeat-con 98.6 1.3E-07 4.3E-12 66.0 6.9 72 12-94 65-144 (440)
75 2z63_A TOLL-like receptor 4, v 98.6 5.9E-08 2E-12 68.9 5.2 72 12-94 446-526 (570)
76 2ft3_A Biglycan; proteoglycan, 98.6 5.3E-08 1.8E-12 65.5 4.7 62 29-94 203-272 (332)
77 1p9a_G Platelet glycoprotein I 98.6 1.5E-07 5E-12 62.8 6.7 35 55-93 144-179 (290)
78 3t6q_A CD180 antigen; protein- 98.6 6.1E-08 2.1E-12 69.5 4.8 73 11-94 57-137 (606)
79 2id5_A Lingo-1, leucine rich r 98.6 9.8E-08 3.3E-12 66.8 5.7 73 11-94 56-136 (477)
80 4glp_A Monocyte differentiatio 98.6 9.5E-08 3.3E-12 63.8 5.4 71 13-94 93-177 (310)
81 2xwt_C Thyrotropin receptor; s 98.6 4.9E-08 1.7E-12 62.9 3.8 72 11-93 31-112 (239)
82 2ft3_A Biglycan; proteoglycan, 98.6 1.3E-07 4.4E-12 63.6 5.9 51 12-70 55-113 (332)
83 3a79_B TLR6, VLRB.59, TOLL-lik 98.5 6E-08 2E-12 69.4 4.4 60 29-94 62-129 (562)
84 2z80_A TOLL-like receptor 2, v 98.5 1.1E-07 3.7E-12 64.4 5.5 72 11-94 76-157 (353)
85 3j0a_A TOLL-like receptor 5; m 98.5 1E-07 3.5E-12 71.4 5.7 63 29-94 83-156 (844)
86 1a9n_A U2A', U2A'; complex (nu 98.5 6.5E-08 2.2E-12 59.8 3.9 70 12-94 65-148 (176)
87 1ziw_A TOLL-like receptor 3; i 98.5 1E-07 3.5E-12 69.2 5.4 71 11-93 25-104 (680)
88 2o6q_A Variable lymphocyte rec 98.5 1.8E-07 6.2E-12 61.3 6.0 15 56-70 154-168 (270)
89 1ziw_A TOLL-like receptor 3; i 98.5 6E-08 2.1E-12 70.4 4.1 38 53-93 115-152 (680)
90 3zyi_A Leucine-rich repeat-con 98.5 1.2E-07 4.1E-12 66.2 5.4 63 29-94 228-298 (452)
91 2xot_A Amphoterin-induced prot 98.5 1.2E-07 4.1E-12 64.7 5.2 72 12-94 40-120 (361)
92 3o6n_A APL1; leucine-rich repe 98.5 1.7E-07 5.9E-12 64.1 6.0 62 29-94 79-149 (390)
93 3zyj_A Leucine-rich repeat-con 98.5 1.3E-07 4.6E-12 65.8 5.5 63 29-94 217-287 (440)
94 3oja_B Anopheles plasmodium-re 98.5 1.7E-07 5.9E-12 67.7 6.2 63 28-94 84-155 (597)
95 1wwl_A Monocyte differentiatio 98.5 4.4E-08 1.5E-12 65.6 2.3 38 53-93 167-208 (312)
96 2o6q_A Variable lymphocyte rec 98.5 3E-07 1E-11 60.3 6.1 37 54-93 128-164 (270)
97 1p9a_G Platelet glycoprotein I 98.5 3E-07 1E-11 61.2 6.0 70 12-93 78-155 (290)
98 1xku_A Decorin; proteoglycan, 98.4 6.1E-07 2.1E-11 60.1 5.9 52 11-70 52-111 (330)
99 3oja_A Leucine-rich immune mol 98.4 4.2E-07 1.4E-11 64.5 5.2 38 52-93 207-244 (487)
100 3o53_A Protein LRIM1, AGAP0063 98.3 5.3E-07 1.8E-11 60.4 4.7 42 49-94 204-245 (317)
101 3oja_A Leucine-rich immune mol 98.3 3E-07 1E-11 65.3 3.4 70 12-94 121-199 (487)
102 2ast_B S-phase kinase-associat 98.3 1.3E-07 4.5E-12 63.2 1.3 39 52-93 111-149 (336)
103 2ast_B S-phase kinase-associat 98.3 4E-07 1.4E-11 60.8 3.6 73 11-94 93-176 (336)
104 1ds9_A Outer arm dynein; leuci 98.3 1.3E-08 4.4E-13 64.2 -4.0 67 12-93 49-122 (198)
105 1ds9_A Outer arm dynein; leuci 98.3 3.1E-08 1E-12 62.4 -2.7 36 54-93 110-147 (198)
106 4glp_A Monocyte differentiatio 98.2 6.3E-07 2.1E-11 59.8 3.4 68 12-94 225-302 (310)
107 2ca6_A RAN GTPase-activating p 98.2 6.3E-07 2.1E-11 61.3 3.4 73 11-94 32-130 (386)
108 1h6u_A Internalin H; cell adhe 98.2 3.1E-06 1.1E-10 56.6 6.5 34 55-93 103-136 (308)
109 4fmz_A Internalin; leucine ric 98.2 1.7E-06 5.8E-11 58.1 5.0 37 52-93 304-340 (347)
110 1o6v_A Internalin A; bacterial 98.2 2.2E-06 7.6E-11 60.0 5.8 66 12-93 69-141 (466)
111 1h6u_A Internalin H; cell adhe 98.2 3.8E-06 1.3E-10 56.1 6.6 34 55-93 147-180 (308)
112 1jl5_A Outer protein YOPM; leu 98.2 4.1E-07 1.4E-11 64.1 1.3 51 11-70 11-82 (454)
113 3o53_A Protein LRIM1, AGAP0063 98.2 1.9E-06 6.4E-11 57.7 4.5 61 29-94 154-222 (317)
114 4fmz_A Internalin; leucine ric 98.2 5.5E-06 1.9E-10 55.6 6.7 60 29-94 253-319 (347)
115 1h6t_A Internalin B; cell adhe 98.2 4.5E-06 1.5E-10 55.5 6.1 66 12-93 69-141 (291)
116 1h6t_A Internalin B; cell adhe 98.1 6E-06 2E-10 54.9 6.2 17 54-70 151-167 (291)
117 3cvr_A Invasion plasmid antige 98.1 7.1E-07 2.4E-11 64.9 1.8 45 12-70 60-111 (571)
118 3bz5_A Internalin-J, INLJ; leu 98.1 4.7E-06 1.6E-10 58.7 5.5 65 11-93 42-113 (457)
119 1xeu_A Internalin C; cellular 98.1 5.3E-06 1.8E-10 54.4 5.1 35 54-93 145-179 (263)
120 1m9s_A Internalin B; cell inva 98.1 7.8E-06 2.7E-10 59.8 6.3 16 55-70 149-164 (605)
121 1xeu_A Internalin C; cellular 98.1 6E-06 2.1E-10 54.2 5.0 57 29-94 73-136 (263)
122 2xwt_C Thyrotropin receptor; s 98.0 7.8E-06 2.7E-10 52.4 4.9 11 59-69 179-189 (239)
123 2ca6_A RAN GTPase-activating p 98.0 1.2E-06 4E-11 59.9 1.1 71 12-93 217-310 (386)
124 1o6v_A Internalin A; bacterial 98.0 1.1E-05 3.6E-10 56.6 5.6 58 29-94 319-383 (466)
125 1jl5_A Outer protein YOPM; leu 98.0 2.7E-06 9.4E-11 59.9 2.5 68 12-94 318-404 (454)
126 3g06_A SSPH2 (leucine-rich rep 98.0 1.1E-05 3.7E-10 59.3 5.5 58 29-94 231-292 (622)
127 3bz5_A Internalin-J, INLJ; leu 98.0 1.2E-05 4.1E-10 56.7 5.3 64 11-93 64-134 (457)
128 3rw6_A Nuclear RNA export fact 97.9 7.1E-06 2.4E-10 54.7 3.7 70 11-92 170-257 (267)
129 1m9s_A Internalin B; cell inva 97.9 1.8E-05 6.2E-10 57.8 6.1 58 29-94 141-205 (605)
130 3cvr_A Invasion plasmid antige 97.9 8.8E-06 3E-10 59.2 4.4 29 62-94 210-238 (571)
131 4ay9_X Follicle-stimulating ho 97.9 1.2E-05 4E-10 54.5 4.1 70 12-93 31-111 (350)
132 3goz_A Leucine-rich repeat-con 97.9 5.9E-06 2E-10 56.2 2.6 19 59-80 80-98 (362)
133 3goz_A Leucine-rich repeat-con 97.7 2.8E-05 9.4E-10 52.9 3.7 63 29-94 8-88 (362)
134 4ay9_X Follicle-stimulating ho 97.6 5.7E-05 2E-09 51.1 4.3 56 13-81 156-220 (350)
135 1z7x_W Ribonuclease inhibitor; 97.6 1E-05 3.5E-10 56.0 0.5 34 58-94 369-406 (461)
136 1z7x_W Ribonuclease inhibitor; 97.4 4.3E-05 1.5E-09 52.9 1.7 33 59-94 142-178 (461)
137 3g06_A SSPH2 (leucine-rich rep 97.4 6.9E-05 2.4E-09 55.0 2.3 62 12-85 242-307 (622)
138 3un9_A NLR family member X1; l 97.1 0.00012 4.1E-09 50.5 1.0 40 52-94 204-247 (372)
139 3ogk_B Coronatine-insensitive 97.1 0.00015 5E-09 51.7 1.5 40 50-93 211-250 (592)
140 2p1m_B Transport inhibitor res 97.0 0.00015 5.3E-09 51.5 1.0 72 12-94 106-192 (594)
141 3rw6_A Nuclear RNA export fact 97.0 0.00048 1.6E-08 45.8 3.0 18 1-18 80-97 (267)
142 3un9_A NLR family member X1; l 96.8 0.00057 1.9E-08 47.1 2.5 41 51-94 175-219 (372)
143 3ogk_B Coronatine-insensitive 96.8 0.00013 4.6E-09 51.9 -0.9 9 12-20 113-121 (592)
144 3sb4_A Hypothetical leucine ri 96.3 0.0058 2E-07 40.8 4.6 35 54-92 292-327 (329)
145 1io0_A Tropomodulin; LRR prote 96.1 0.0021 7.3E-08 39.9 1.7 36 55-93 89-128 (185)
146 3sb4_A Hypothetical leucine ri 96.0 0.0099 3.4E-07 39.6 4.7 69 11-93 226-304 (329)
147 3e4g_A ATP synthase subunit S, 96.0 0.004 1.4E-07 39.1 2.4 74 11-94 61-147 (176)
148 2p1m_B Transport inhibitor res 95.9 0.0061 2.1E-07 43.3 3.5 72 11-93 156-242 (594)
149 1io0_A Tropomodulin; LRR prote 95.3 0.0039 1.3E-07 38.7 0.5 41 51-94 113-159 (185)
150 3rfe_A Platelet glycoprotein I 95.3 0.018 6.3E-07 33.9 3.5 30 60-93 32-62 (130)
151 3rfe_A Platelet glycoprotein I 92.0 0.14 4.7E-06 30.0 3.1 23 48-70 43-66 (130)
152 2ra8_A Uncharacterized protein 90.6 0.076 2.6E-06 36.5 1.0 35 57-94 277-315 (362)
153 3e4g_A ATP synthase subunit S, 88.8 0.24 8.1E-06 30.9 2.2 39 54-94 80-122 (176)
154 2ra8_A Uncharacterized protein 87.5 0.27 9.3E-06 33.7 2.0 10 11-20 172-181 (362)
155 4fdw_A Leucine rich hypothetic 85.0 1.2 4.1E-05 30.8 4.2 35 54-92 175-209 (401)
156 4fdw_A Leucine rich hypothetic 81.5 2.4 8.4E-05 29.2 4.7 6 13-18 250-255 (401)
157 1pgv_A TMD-1, tropomodulin TMD 75.1 1.6 5.4E-05 27.6 2.0 17 54-70 93-109 (197)
158 4h09_A Hypothetical leucine ri 71.6 12 0.0004 24.9 5.8 16 55-70 282-297 (379)
159 4gt6_A Cell surface protein; l 66.1 15 0.00051 24.7 5.4 35 54-93 329-364 (394)
160 4fs7_A Uncharacterized protein 66.1 13 0.00045 25.0 5.2 35 54-93 338-373 (394)
161 4gt6_A Cell surface protein; l 56.9 24 0.00082 23.7 5.2 15 55-69 353-367 (394)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.60 E-value=1.7e-15 Score=102.03 Aligned_cols=82 Identities=28% Similarity=0.332 Sum_probs=53.5
Q ss_pred CcceEecCCC--CcEEEEEeCCCCCCCCcccceee--eCCccccCCcCccc---------ccCCchhhhcCCCCCeEecc
Q 034444 1 MADVVCNNFT--GRVIELKLGNHFTYIGSVAELHA--NYRKSKLVGKHLIH---------GIQIPIYIASLENLRYLNLS 67 (94)
Q Consensus 1 w~gv~c~~~~--~~v~~L~l~~~~~~~~~~n~l~g--~~p~~l~~l~~L~~---------~~~iP~~i~~l~~L~~L~ls 67 (94)
|.||.|+... ++|+.|++++ |.+.| .+|+.+..+++|++ .+.+|..++++++|++|+++
T Consensus 38 w~gv~C~~~~~~~~l~~L~L~~--------~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls 109 (313)
T 1ogq_A 38 WLGVLCDTDTQTYRVNNLDLSG--------LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109 (313)
T ss_dssp STTEEECCSSSCCCEEEEEEEC--------CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEE
T ss_pred CcceEeCCCCCCceEEEEECCC--------CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECc
Confidence 9999998654 7899999999 66666 56666666655554 23455555555666666555
Q ss_pred CCCCCcccccChHhhhCCCCCcEEec
Q 034444 68 NLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 68 ~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
+|+ ++|.+|..++.+++|++|++
T Consensus 110 ~n~---l~~~~p~~~~~l~~L~~L~L 132 (313)
T 1ogq_A 110 HTN---VSGAIPDFLSQIKTLVTLDF 132 (313)
T ss_dssp EEC---CEEECCGGGGGCTTCCEEEC
T ss_pred CCe---eCCcCCHHHhCCCCCCEEeC
Confidence 555 55555555555555555554
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.48 E-value=3.9e-14 Score=103.26 Aligned_cols=81 Identities=20% Similarity=0.171 Sum_probs=72.7
Q ss_pred cceEecCCCCcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-----c---------c------------------
Q 034444 2 ADVVCNNFTGRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-----G---------I------------------ 49 (94)
Q Consensus 2 ~gv~c~~~~~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-----~---------~------------------ 49 (94)
.||+|+.. ++|+.|+|++ +.+.|.+|+++++|++|++ . +
T Consensus 73 ~GV~C~~~-~~V~~L~L~~--------~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l 143 (636)
T 4eco_A 73 PGVSLNSN-GRVTGLSLEG--------FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143 (636)
T ss_dssp TTEEECTT-CCEEEEECTT--------SCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHT
T ss_pred CCeEEcCC-CCEEEEEecC--------cccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHh
Confidence 89999754 8999999999 9999999999999999887 1 0
Q ss_pred -----------------------------------------------------CCchhhhcCCCCCeEeccCCCCCcccc
Q 034444 50 -----------------------------------------------------QIPIYIASLENLRYLNLSNLSSGRLCG 76 (94)
Q Consensus 50 -----------------------------------------------------~iP~~i~~l~~L~~L~ls~N~~~~l~g 76 (94)
.||+.++++++|++|++++|+ ++|
T Consensus 144 ~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~---l~~ 220 (636)
T 4eco_A 144 HYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP---FVA 220 (636)
T ss_dssp HHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC---CCG
T ss_pred hHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc---ccc
Confidence 278899999999999999999 998
Q ss_pred c-----------------ChHhhh--CCCCCcEEecC
Q 034444 77 S-----------------IPSSLG--NLYSFTSFDTF 94 (94)
Q Consensus 77 ~-----------------iP~~i~--~l~~L~~L~ls 94 (94)
. +|+.++ ++++|++|+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~ 257 (636)
T 4eco_A 221 ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257 (636)
T ss_dssp GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred ccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence 6 999999 99999999873
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.45 E-value=5.5e-14 Score=104.16 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=64.7
Q ss_pred CcceEecCCCCcEEEEEeCCCCCCCCcccceeee---CCccccCCcCccc-----cc--CCchhhhcCCCCCeEeccCCC
Q 034444 1 MADVVCNNFTGRVIELKLGNHFTYIGSVAELHAN---YRKSKLVGKHLIH-----GI--QIPIYIASLENLRYLNLSNLS 70 (94)
Q Consensus 1 w~gv~c~~~~~~v~~L~l~~~~~~~~~~n~l~g~---~p~~l~~l~~L~~-----~~--~iP~~i~~l~~L~~L~ls~N~ 70 (94)
|+||+|+ .++|++|+|++ +.+.|. +|+.+.+++.|+. .+ .+|+.++++++|++|+|++|.
T Consensus 42 w~gv~C~--~~~v~~L~L~~--------~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~ 111 (768)
T 3rgz_A 42 FDGVTCR--DDKVTSIDLSS--------KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111 (768)
T ss_dssp STTEEEE--TTEEEEEECTT--------SCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSE
T ss_pred CcceEEC--CCcEEEEECCC--------CCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCc
Confidence 9999998 58999999999 888888 8888888877776 22 244677788888888888888
Q ss_pred CCcccccChH--hhhCCCCCcEEecC
Q 034444 71 SGRLCGSIPS--SLGNLYSFTSFDTF 94 (94)
Q Consensus 71 ~~~l~g~iP~--~i~~l~~L~~L~ls 94 (94)
++|.+|. .++++++|++||++
T Consensus 112 ---l~~~~~~~~~l~~l~~L~~L~Ls 134 (768)
T 3rgz_A 112 ---LSGPVTTLTSLGSCSGLKFLNVS 134 (768)
T ss_dssp ---EEEEGGGGGGGGGCTTCCEEECC
T ss_pred ---CCCcCCChHHHhCCCCCCEEECc
Confidence 8877777 77778888877764
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.40 E-value=2.3e-13 Score=102.87 Aligned_cols=81 Identities=21% Similarity=0.171 Sum_probs=72.8
Q ss_pred cceEecCCCCcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc---------ccC----------------------
Q 034444 2 ADVVCNNFTGRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH---------GIQ---------------------- 50 (94)
Q Consensus 2 ~gv~c~~~~~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~---------~~~---------------------- 50 (94)
.||.|+. .++|+.|+|++ +.+.|.+|+++++|++|+. .|.
T Consensus 315 ~GV~C~~-~~~V~~L~Ls~--------~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~ 385 (876)
T 4ecn_A 315 PGVDLDN-NGRVTGLSLAG--------FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385 (876)
T ss_dssp TTEEECT-TSCEEEEECTT--------TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHT
T ss_pred CceEecC-CCCEEEEECcc--------CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHH
Confidence 9999975 58999999999 9999999999999999887 122
Q ss_pred ------------------------------------------------------CchhhhcCCCCCeEeccCCCCCcccc
Q 034444 51 ------------------------------------------------------IPIYIASLENLRYLNLSNLSSGRLCG 76 (94)
Q Consensus 51 ------------------------------------------------------iP~~i~~l~~L~~L~ls~N~~~~l~g 76 (94)
||+.++++++|++|+|++|+ ++|
T Consensus 386 ~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~---Lsg 462 (876)
T 4ecn_A 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP---FTY 462 (876)
T ss_dssp HHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC---CCG
T ss_pred hhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCc---CCC
Confidence 89999999999999999999 998
Q ss_pred -----------------cChHhhh--CCCCCcEEecC
Q 034444 77 -----------------SIPSSLG--NLYSFTSFDTF 94 (94)
Q Consensus 77 -----------------~iP~~i~--~l~~L~~L~ls 94 (94)
.+|+.++ ++++|++|+|+
T Consensus 463 ~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls 499 (876)
T 4ecn_A 463 DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499 (876)
T ss_dssp GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred CcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence 4999988 99999999873
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.37 E-value=7e-13 Score=98.25 Aligned_cols=73 Identities=26% Similarity=0.268 Sum_probs=68.8
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSL 82 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i 82 (94)
..++.|++++ |+++|.+|.+++.++.|+. .|.+|..++++++|+.||+++|+ ++|.+|..+
T Consensus 632 ~~L~~LdLs~--------N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~---l~g~ip~~l 700 (768)
T 3rgz_A 632 GSMMFLDMSY--------NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK---LDGRIPQAM 700 (768)
T ss_dssp BCCCEEECCS--------SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC---CEECCCGGG
T ss_pred ccccEEECcC--------CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc---ccCcCChHH
Confidence 3578899999 9999999999999999988 78999999999999999999999 999999999
Q ss_pred hCCCCCcEEecC
Q 034444 83 GNLYSFTSFDTF 94 (94)
Q Consensus 83 ~~l~~L~~L~ls 94 (94)
+.+++|++||++
T Consensus 701 ~~l~~L~~L~ls 712 (768)
T 3rgz_A 701 SALTMLTEIDLS 712 (768)
T ss_dssp GGCCCCSEEECC
T ss_pred hCCCCCCEEECc
Confidence 999999999986
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.21 E-value=3.4e-12 Score=86.53 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=64.6
Q ss_pred CcceEec--------CCCCcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEe
Q 034444 1 MADVVCN--------NFTGRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLN 65 (94)
Q Consensus 1 w~gv~c~--------~~~~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ 65 (94)
|.|+.|. ....+|+.|++++ |.+. .+|+.+..+++|++ ...+|..++++++|++|+
T Consensus 63 ~~g~~~~~~~~~l~~~~~~~l~~L~L~~--------n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~ 133 (328)
T 4fcg_A 63 RTGRALKATADLLEDATQPGRVALELRS--------VPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLT 133 (328)
T ss_dssp SHHHHHHHHHHHHHHHTSTTCCEEEEES--------SCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEE
T ss_pred cCCcchhhhHHHHhcccccceeEEEccC--------CCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEE
Confidence 6777774 1346799999999 8887 78888888888877 347888888888888888
Q ss_pred ccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 66 LSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 66 ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
+++|+ ++ .+|+.++.+++|++|+++
T Consensus 134 Ls~n~---l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 134 LARNP---LR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp EESCC---CC-CCCGGGGGCTTCCEEEEE
T ss_pred CCCCc---cc-cCcHHHhcCcCCCEEECC
Confidence 88888 77 788888888888888763
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.10 E-value=1.3e-10 Score=78.10 Aligned_cols=62 Identities=26% Similarity=0.321 Sum_probs=36.1
Q ss_pred cceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCC-CCcEEec
Q 034444 29 AELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLY-SFTSFDT 93 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~-~L~~L~l 93 (94)
|.+++.+|..+..+++|++ .+.+|..+..+++|++|++++|+ ++|.+|..++.++ +|++|++
T Consensus 111 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~---l~~~~p~~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR---ISGAIPDSYGSFSKLFTSMTI 181 (313)
T ss_dssp ECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC---CEEECCGGGGCCCTTCCEEEC
T ss_pred CeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc---ccCcCCHHHhhhhhcCcEEEC
Confidence 5555555555555555554 33555556666666666666666 6656666666555 5565554
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.06 E-value=2.8e-10 Score=77.07 Aligned_cols=71 Identities=21% Similarity=0.179 Sum_probs=54.9
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLG 83 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~ 83 (94)
.++.|++++ |.+.+.+|..+..+++|+. .+.+|..++++++|+.|++++|. +.|.+|+.++
T Consensus 230 ~L~~L~Ls~--------n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~---~~~~iP~~l~ 298 (328)
T 4fcg_A 230 KLEELDLRG--------CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV---NLSRLPSLIA 298 (328)
T ss_dssp TCCEEECTT--------CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT---TCCCCCGGGG
T ss_pred CCCEEECcC--------CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC---chhhccHHHh
Confidence 345555555 7777778877777777776 56788888888888888888888 8888888888
Q ss_pred CCCCCcEEec
Q 034444 84 NLYSFTSFDT 93 (94)
Q Consensus 84 ~l~~L~~L~l 93 (94)
++++|+.+++
T Consensus 299 ~L~~L~~l~l 308 (328)
T 4fcg_A 299 QLPANCIILV 308 (328)
T ss_dssp GSCTTCEEEC
T ss_pred hccCceEEeC
Confidence 8888888765
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.05 E-value=4.5e-10 Score=79.65 Aligned_cols=73 Identities=19% Similarity=0.082 Sum_probs=55.0
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSL 82 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i 82 (94)
..++.|++++ |.+++..|..+..+++|++ .+..|..++.+++|++|++++|+ +++..|..+
T Consensus 26 ~~L~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~ 94 (549)
T 2z81_A 26 AAMKSLDLSF--------NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH---LSSLSSSWF 94 (549)
T ss_dssp TTCCEEECCS--------SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC---CCSCCHHHH
T ss_pred CCccEEECcC--------CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc---cCccCHHHh
Confidence 3688999999 8888777777888888777 33344567888888888888888 776666667
Q ss_pred hCCCCCcEEecC
Q 034444 83 GNLYSFTSFDTF 94 (94)
Q Consensus 83 ~~l~~L~~L~ls 94 (94)
+.+++|++|+++
T Consensus 95 ~~l~~L~~L~Ls 106 (549)
T 2z81_A 95 GPLSSLKYLNLM 106 (549)
T ss_dssp TTCTTCCEEECT
T ss_pred ccCCCCcEEECC
Confidence 888888888764
No 10
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.04 E-value=2e-10 Score=72.44 Aligned_cols=62 Identities=21% Similarity=0.205 Sum_probs=34.9
Q ss_pred cceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 29 AELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
|.+++..|..+..+++|+. .+..|..+..+++|++|++++|+ +++..|..++.+++|++|++
T Consensus 64 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 64 NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ---ISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC---CCEECTTSSTTCTTCCEEEC
T ss_pred CCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc---CCeeCHHHhhcCCCCCEEEe
Confidence 5555544555555555554 22223345566666666666666 66555666666666666665
No 11
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=9.4e-10 Score=68.28 Aligned_cols=73 Identities=18% Similarity=0.047 Sum_probs=59.5
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchh-hhcCCCCCeEeccCCCCCcccccChHhh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIY-IASLENLRYLNLSNLSSGRLCGSIPSSL 82 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~-i~~l~~L~~L~ls~N~~~~l~g~iP~~i 82 (94)
..++.|++++ |.+++..|..+..+++|++ ...+|+. +..+++|++|++++|+ +++..|..+
T Consensus 30 ~~l~~L~L~~--------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~---l~~~~~~~~ 98 (170)
T 3g39_A 30 TTTQVLYLYD--------NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ---LKSIPRGAF 98 (170)
T ss_dssp TTCSEEECCS--------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTT
T ss_pred CCCcEEEcCC--------CcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc---cCEeCHHHh
Confidence 3567788888 9999777888888988887 3456654 6899999999999999 996545568
Q ss_pred hCCCCCcEEecC
Q 034444 83 GNLYSFTSFDTF 94 (94)
Q Consensus 83 ~~l~~L~~L~ls 94 (94)
..+++|++|+|+
T Consensus 99 ~~l~~L~~L~L~ 110 (170)
T 3g39_A 99 DNLKSLTHIWLL 110 (170)
T ss_dssp TTCTTCCEEECC
T ss_pred cCCCCCCEEEeC
Confidence 999999999985
No 12
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.00 E-value=1e-09 Score=70.87 Aligned_cols=82 Identities=16% Similarity=0.048 Sum_probs=44.8
Q ss_pred CcceEecCC---------CCcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchh-hhcCCCCCe
Q 034444 1 MADVVCNNF---------TGRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIY-IASLENLRY 63 (94)
Q Consensus 1 w~gv~c~~~---------~~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~-i~~l~~L~~ 63 (94)
|++|.|... ...++.|++++ |.+++..|..+..+++|+. ...+|.. +..+++|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~--------n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHD--------NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCS--------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCC--------CccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCE
Confidence 677888531 23578888888 6666555555555555555 2334432 355555555
Q ss_pred EeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 64 LNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 64 L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
|++++|+ +++..+..+..+++|++|++
T Consensus 93 L~Ls~N~---l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 93 LDLGTNQ---LTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp EECCSSC---CCCCCTTTTTTCTTCCEEEC
T ss_pred EECCCCc---CCccChhHhCcchhhCeEec
Confidence 5555555 55322233444555555544
No 13
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.99 E-value=1.3e-09 Score=67.45 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=42.8
Q ss_pred CcceEecCC---------CCcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCch-hhhcCCCCCe
Q 034444 1 MADVVCNNF---------TGRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPI-YIASLENLRY 63 (94)
Q Consensus 1 w~gv~c~~~---------~~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~-~i~~l~~L~~ 63 (94)
|++|.|... ...++.|++++ |.+.+..+..+..+++|++ ...+|+ .+..+++|++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~~l~~L~l~~--------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPSSATRLELES--------NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI 80 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCTTCSEEECCS--------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEecCCCCccCCCCCCCCCcEEEeCC--------CcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence 667777531 23577888888 6665333333455555554 223333 2455555555
Q ss_pred EeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 64 LNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 64 L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
|++++|+ +++..+..++.+++|++|++
T Consensus 81 L~l~~N~---l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 81 LYLHENK---LQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp EECCSSC---CCCCCTTTTTTCTTCCEEEC
T ss_pred EECCCCC---ccccCHHHhhCCcccCEEEC
Confidence 5555555 55333333455555555554
No 14
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.98 E-value=9.7e-10 Score=69.29 Aligned_cols=72 Identities=15% Similarity=0.084 Sum_probs=59.4
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCc-cccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRK-SKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSL 82 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~-~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i 82 (94)
.++.|++++ |.+.+..+. .+..+++|++ .+..|..+..+++|++|++++|+ +++..|..+
T Consensus 30 ~l~~L~l~~--------n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~ 98 (192)
T 1w8a_A 30 HTTELLLND--------NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK---IKEISNKMF 98 (192)
T ss_dssp TCSEEECCS--------CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC---CCEECSSSS
T ss_pred CCCEEECCC--------CcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc---CCccCHHHh
Confidence 678888888 999854443 3778888887 45557889999999999999999 998777779
Q ss_pred hCCCCCcEEecC
Q 034444 83 GNLYSFTSFDTF 94 (94)
Q Consensus 83 ~~l~~L~~L~ls 94 (94)
+.+++|++|+|+
T Consensus 99 ~~l~~L~~L~L~ 110 (192)
T 1w8a_A 99 LGLHQLKTLNLY 110 (192)
T ss_dssp TTCTTCCEEECC
T ss_pred cCCCCCCEEECC
Confidence 999999999985
No 15
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.96 E-value=1.8e-09 Score=68.34 Aligned_cols=82 Identities=20% Similarity=0.147 Sum_probs=42.5
Q ss_pred CcceEecCC---------CCcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCch-hhhcCCCCCe
Q 034444 1 MADVVCNNF---------TGRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPI-YIASLENLRY 63 (94)
Q Consensus 1 w~gv~c~~~---------~~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~-~i~~l~~L~~ 63 (94)
|++|.|... ...++.|++++ |.+++..+..+..+++|+. ...+|. .+..+++|++
T Consensus 9 ~~~v~c~~~~l~~~p~~~~~~l~~L~l~~--------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGIPAQTTYLDLET--------NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80 (208)
T ss_dssp TTEEECCSSCCSSCCSCCCTTCSEEECCS--------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEecCCCccCCCCCCCCCCcEEEcCC--------CccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence 788888631 23578899888 6665333333445555554 222333 2345555555
Q ss_pred EeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 64 LNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 64 L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
|++++|+ +++..+..++.+++|++|++
T Consensus 81 L~Ls~n~---l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 81 LNLSTNQ---LQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp EECCSSC---CCCCCTTTTTTCTTCCEEEC
T ss_pred EECCCCc---CCccCHhHhcCccCCCEEEc
Confidence 5555555 54322223445555555544
No 16
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.94 E-value=1.4e-09 Score=65.62 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=20.6
Q ss_pred CchhhhcCCCCCeEeccCCCCCcccc-cChHhhhCCCCCcEEec
Q 034444 51 IPIYIASLENLRYLNLSNLSSGRLCG-SIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 51 iP~~i~~l~~L~~L~ls~N~~~~l~g-~iP~~i~~l~~L~~L~l 93 (94)
+|..+..+++|++|++++|+ +++ ..|..++.+++|++|++
T Consensus 80 ~~~~~~~l~~L~~L~ls~N~---i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 80 LEVLAEKCPNLTHLNLSGNK---IKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp THHHHHHCTTCCEEECTTSC---CCSHHHHGGGGGCTTCCEEEC
T ss_pred HHHHhhhCCCCCEEECCCCc---CCChHHHHHHhhCCCCCEEeC
Confidence 44445555555555555555 543 12244555555555554
No 17
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.93 E-value=1.9e-09 Score=67.28 Aligned_cols=71 Identities=24% Similarity=0.185 Sum_probs=57.6
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchh-hhcCCCCCeEeccCCCCCcccccChH-hh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIY-IASLENLRYLNLSNLSSGRLCGSIPS-SL 82 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~-i~~l~~L~~L~ls~N~~~~l~g~iP~-~i 82 (94)
.++.|++++ |.+.+..|..+..+++|++ ...+|+. +..+++|++|++++|+ +++ +|+ .+
T Consensus 34 ~L~~L~Ls~--------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~---l~~-l~~~~~ 101 (174)
T 2r9u_A 34 DKQRLWLNN--------NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH---LKS-IPRGAF 101 (174)
T ss_dssp TCSEEECCS--------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCC-CCTTTT
T ss_pred CCcEEEeCC--------CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc---cce-eCHHHh
Confidence 466777777 9999777888888888887 4457765 5899999999999999 884 555 48
Q ss_pred hCCCCCcEEecC
Q 034444 83 GNLYSFTSFDTF 94 (94)
Q Consensus 83 ~~l~~L~~L~ls 94 (94)
..+++|++|+|+
T Consensus 102 ~~l~~L~~L~L~ 113 (174)
T 2r9u_A 102 DNLKSLTHIYLY 113 (174)
T ss_dssp TTCTTCSEEECC
T ss_pred ccccCCCEEEeC
Confidence 999999999874
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.92 E-value=2.3e-09 Score=74.41 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=58.2
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCc-hhhhcCCCCCeEeccCCCCCcccccChHh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIP-IYIASLENLRYLNLSNLSSGRLCGSIPSS 81 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP-~~i~~l~~L~~L~ls~N~~~~l~g~iP~~ 81 (94)
.+++.|++++ |.+++..|..+..+++|++ .+.+| ..+..+++|++|++++|+ +++..|..
T Consensus 30 ~~l~~L~Ls~--------n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~ 98 (455)
T 3v47_A 30 AHVNYVDLSL--------NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ---FLQLETGA 98 (455)
T ss_dssp TTCCEEECCS--------SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT---TCEECTTT
T ss_pred CccCEEEecC--------CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc---cCccChhh
Confidence 4689999999 8898777888888888887 23453 467888888888888888 88777888
Q ss_pred hhCCCCCcEEecC
Q 034444 82 LGNLYSFTSFDTF 94 (94)
Q Consensus 82 i~~l~~L~~L~ls 94 (94)
++.+++|++|+++
T Consensus 99 ~~~l~~L~~L~L~ 111 (455)
T 3v47_A 99 FNGLANLEVLTLT 111 (455)
T ss_dssp TTTCTTCCEEECT
T ss_pred ccCcccCCEEeCC
Confidence 8888888888874
No 19
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.92 E-value=1.9e-09 Score=69.30 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=22.1
Q ss_pred chhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 52 PIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 52 P~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
|..+..+++|++|++++|+ +++..|..+..+++|+.|++
T Consensus 122 ~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 122 NDSFIGLSSVRLLSLYDNQ---ITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp TTSSTTCTTCSEEECTTSC---CCCBCTTTTTTCTTCCEEEC
T ss_pred HhHcCCCccCCEEECCCCc---CCEECHHHhcCCCCCCEEEe
Confidence 4445555555555665555 55444555555556665554
No 20
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.92 E-value=2.8e-09 Score=68.54 Aligned_cols=63 Identities=13% Similarity=-0.012 Sum_probs=36.1
Q ss_pred cceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
|.+++..+..+..+++|+. .+..|..+..+++|++|++++|+ +++..|..+..+++|++|+|+
T Consensus 67 N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 67 NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR---ITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC---CCCBCTTSSTTCTTCSEEECT
T ss_pred CcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc---CCeECHhHcCCCccCCEEECC
Confidence 5555444445555555554 22223346666666666666666 665556666666666666653
No 21
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.90 E-value=2.5e-09 Score=67.62 Aligned_cols=71 Identities=23% Similarity=0.134 Sum_probs=44.4
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCc-hhhhcCCCCCeEeccCCCCCcccccChHhhh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIP-IYIASLENLRYLNLSNLSSGRLCGSIPSSLG 83 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP-~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~ 83 (94)
.++.|++++ |.++ .+|..+..+++|+. ...++ ..|..+++|++|++++|+ +++..|..+.
T Consensus 32 ~l~~L~L~~--------n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~---l~~i~~~~f~ 99 (193)
T 2wfh_A 32 DVTELYLDG--------NQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR---LRCIPPRTFD 99 (193)
T ss_dssp TCCEEECCS--------SCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCBCCTTTTT
T ss_pred CCCEEECCC--------CcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc---cCEeCHHHhC
Confidence 467777777 7776 66666666666665 22233 346666777777777776 6654455566
Q ss_pred CCCCCcEEecC
Q 034444 84 NLYSFTSFDTF 94 (94)
Q Consensus 84 ~l~~L~~L~ls 94 (94)
.+++|++|+|+
T Consensus 100 ~l~~L~~L~L~ 110 (193)
T 2wfh_A 100 GLKSLRLLSLH 110 (193)
T ss_dssp TCTTCCEEECC
T ss_pred CCCCCCEEECC
Confidence 66666666653
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.90 E-value=1.1e-09 Score=79.79 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=44.1
Q ss_pred cceeeeCCccccCCcCccc--------ccC-----------------Cchhhh--cCCCCCeEeccCCCCCcccccChHh
Q 034444 29 AELHANYRKSKLVGKHLIH--------GIQ-----------------IPIYIA--SLENLRYLNLSNLSSGRLCGSIPSS 81 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~--------~~~-----------------iP~~i~--~l~~L~~L~ls~N~~~~l~g~iP~~ 81 (94)
|+++| +|++++++++|++ .+. +|+.++ ++++|++|++++|+ +.|.+|+.
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~---l~~~~p~~ 268 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP---NLTKLPTF 268 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT---TCSSCCTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc---CCccChHH
Confidence 56666 7777777777776 333 777776 77777777777777 77777777
Q ss_pred hhCCCCCcEEecC
Q 034444 82 LGNLYSFTSFDTF 94 (94)
Q Consensus 82 i~~l~~L~~L~ls 94 (94)
++++++|++|+++
T Consensus 269 l~~l~~L~~L~Ls 281 (636)
T 4eco_A 269 LKALPEMQLINVA 281 (636)
T ss_dssp TTTCSSCCEEECT
T ss_pred HhcCCCCCEEECc
Confidence 7777777777764
No 23
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.88 E-value=4.6e-09 Score=67.50 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=34.9
Q ss_pred cccceeeeCCccccCCcCccc-------ccCCchh-hhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 27 SVAELHANYRKSKLVGKHLIH-------GIQIPIY-IASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 27 ~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~-i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
++|.+++..|..+..+++|++ ...+|+. +..+++|++|++++|+ +++..|..+..+++|++|+|
T Consensus 64 s~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 64 SNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK---INCLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp CSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC---CCEeCHHHcCCCCCCCEEEC
Confidence 335555555555555555555 2334443 4555666666666666 55544555555666666655
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.87 E-value=1.6e-09 Score=81.01 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=52.3
Q ss_pred CCcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCC-chhhhcCCCCCeEeccCCCCCcccccChH
Q 034444 10 TGRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQI-PIYIASLENLRYLNLSNLSSGRLCGSIPS 80 (94)
Q Consensus 10 ~~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~i-P~~i~~l~~L~~L~ls~N~~~~l~g~iP~ 80 (94)
..+++.|+|++ |.+++..|..+..+++|++ .+.+ |..++++++|++|+|++|+ +++..|.
T Consensus 23 p~~l~~LdLs~--------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~---l~~~~p~ 91 (844)
T 3j0a_A 23 LNTTERLLLSF--------NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK---IYFLHPD 91 (844)
T ss_dssp CTTCCEEEEES--------CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC---CCEECTT
T ss_pred CCCcCEEECCC--------CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc---CcccCHh
Confidence 35688899998 8887766777777777776 2234 5567777777777777777 7766677
Q ss_pred hhhCCCCCcEEecC
Q 034444 81 SLGNLYSFTSFDTF 94 (94)
Q Consensus 81 ~i~~l~~L~~L~ls 94 (94)
.++.+++|++|+|+
T Consensus 92 ~~~~l~~L~~L~Ls 105 (844)
T 3j0a_A 92 AFQGLFHLFELRLY 105 (844)
T ss_dssp SSCSCSSCCCEECT
T ss_pred HccCCcccCEeeCc
Confidence 77777777777663
No 25
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.86 E-value=1.9e-09 Score=66.21 Aligned_cols=40 Identities=35% Similarity=0.438 Sum_probs=24.1
Q ss_pred CchhhhcCCCCCeEeccCCCCCcccccCh--HhhhCCCCCcEEecC
Q 034444 51 IPIYIASLENLRYLNLSNLSSGRLCGSIP--SSLGNLYSFTSFDTF 94 (94)
Q Consensus 51 iP~~i~~l~~L~~L~ls~N~~~~l~g~iP--~~i~~l~~L~~L~ls 94 (94)
+|..+..+++|++|++++|+ +++ +| ..++.+++|++|+++
T Consensus 87 ~~~~~~~l~~L~~L~Ls~N~---l~~-~~~~~~l~~l~~L~~L~l~ 128 (168)
T 2ell_A 87 LDMLAEKLPNLTHLNLSGNK---LKD-ISTLEPLKKLECLKSLDLF 128 (168)
T ss_dssp CCHHHHHCTTCCEEECBSSS---CCS-SGGGGGGSSCSCCCEEECC
T ss_pred HHHHHhhCCCCCEEeccCCc---cCc-chhHHHHhcCCCCCEEEee
Confidence 55555566666666666666 653 33 456666666666653
No 26
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.86 E-value=7.7e-09 Score=66.43 Aligned_cols=72 Identities=18% Similarity=0.161 Sum_probs=59.6
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHh-
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSS- 81 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~- 81 (94)
..++.|++++ |.+++..+..+..+++|+. .+..|..+..+++|++|+|++|+ ++ .+|..
T Consensus 32 ~~l~~L~l~~--------n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~---l~-~l~~~~ 99 (220)
T 2v9t_B 32 ETITEIRLEQ--------NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK---IT-ELPKSL 99 (220)
T ss_dssp TTCCEEECCS--------SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC---CC-CCCTTT
T ss_pred cCCCEEECCC--------CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc---CC-ccCHhH
Confidence 3578999999 9999666667888888887 33457789999999999999999 98 56654
Q ss_pred hhCCCCCcEEecC
Q 034444 82 LGNLYSFTSFDTF 94 (94)
Q Consensus 82 i~~l~~L~~L~ls 94 (94)
+..+++|++|+|+
T Consensus 100 f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 100 FEGLFSLQLLLLN 112 (220)
T ss_dssp TTTCTTCCEEECC
T ss_pred ccCCCCCCEEECC
Confidence 6889999999985
No 27
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.85 E-value=4.7e-09 Score=76.08 Aligned_cols=70 Identities=20% Similarity=0.078 Sum_probs=53.9
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccC-hHhhh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSI-PSSLG 83 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~i-P~~i~ 83 (94)
.++.|++++ |.++ .+|..++.+++|+. ...+| .++.+++|+.|++++|+ +++.. |..++
T Consensus 464 ~L~~L~Ls~--------N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~---l~~~~~p~~l~ 530 (567)
T 1dce_A 464 LVTHLDLSH--------NRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR---LQQSAAIQPLV 530 (567)
T ss_dssp TCCEEECCS--------SCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC---CCSSSTTGGGG
T ss_pred cCcEeecCc--------cccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC---CCCCCCcHHHh
Confidence 466777777 8887 78888888888777 33477 78888888888888888 88655 88888
Q ss_pred CCCCCcEEecC
Q 034444 84 NLYSFTSFDTF 94 (94)
Q Consensus 84 ~l~~L~~L~ls 94 (94)
.+++|+.|+|+
T Consensus 531 ~l~~L~~L~L~ 541 (567)
T 1dce_A 531 SCPRLVLLNLQ 541 (567)
T ss_dssp GCTTCCEEECT
T ss_pred cCCCCCEEEec
Confidence 88888888874
No 28
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.83 E-value=1.1e-09 Score=81.18 Aligned_cols=78 Identities=17% Similarity=0.127 Sum_probs=45.9
Q ss_pred CcEEEEEeCCCC---------------CCCCcccceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccC
Q 034444 11 GRVIELKLGNHF---------------TYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSN 68 (94)
Q Consensus 11 ~~v~~L~l~~~~---------------~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~ 68 (94)
..++.|+|++.. .+++++|.++ .+|+.+..+++|++ ...+|..|+.+++|++|+|++
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS
T ss_pred CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC
Confidence 457778888733 0234445555 55655555555555 235566666666666666666
Q ss_pred CCCCcccccChHhhhCCCCCcEEec
Q 034444 69 LSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 69 N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
|. ++ .+|..|+.+++|++|+|
T Consensus 303 N~---l~-~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 303 NM---VT-TLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp SC---CC-CCCSSTTSCTTCCCEEC
T ss_pred CC---CC-ccChhhhcCCCccEEeC
Confidence 66 54 56666666666666665
No 29
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.83 E-value=3.8e-09 Score=78.43 Aligned_cols=66 Identities=29% Similarity=0.370 Sum_probs=57.4
Q ss_pred CCCcccceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 24 YIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 24 ~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
+++++|.+. .+|+.+..+++|++ ...+|..|+.+++|++|+|++|. ++ .+|..++.+++|++|+|+
T Consensus 229 L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~---l~-~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 229 LDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR---LT-SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp EECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC---CS-SCCSSGGGGTTCSEEECC
T ss_pred EECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc---CC-ccChhhcCCCCCCEEECC
Confidence 467788887 78888888888887 44799999999999999999999 88 899999999999999985
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.82 E-value=6.8e-09 Score=74.05 Aligned_cols=73 Identities=18% Similarity=-0.008 Sum_probs=48.3
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCch-hhhcCCCCCeEeccCCCCCcccccChHhh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPI-YIASLENLRYLNLSNLSSGRLCGSIPSSL 82 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~-~i~~l~~L~~L~ls~N~~~~l~g~iP~~i 82 (94)
..++.|+|++ |++++..|..|..+++|++ ...+|+ .|.++++|++|+|++|+ +++-.|..+
T Consensus 52 ~~~~~LdLs~--------N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~---l~~l~~~~f 120 (635)
T 4g8a_A 52 FSTKNLDLSF--------NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP---IQSLALGAF 120 (635)
T ss_dssp TTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---CCEECGGGG
T ss_pred cCCCEEEeeC--------CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc---CCCCCHHHh
Confidence 3588999999 7777544456777777776 223443 46777777777777777 664334456
Q ss_pred hCCCCCcEEecC
Q 034444 83 GNLYSFTSFDTF 94 (94)
Q Consensus 83 ~~l~~L~~L~ls 94 (94)
+.+++|++|+++
T Consensus 121 ~~L~~L~~L~Ls 132 (635)
T 4g8a_A 121 SGLSSLQKLVAV 132 (635)
T ss_dssp TTCTTCCEEECT
T ss_pred cCCCCCCEEECC
Confidence 677777777653
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.81 E-value=8.3e-09 Score=73.61 Aligned_cols=72 Identities=15% Similarity=0.012 Sum_probs=55.2
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLG 83 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~ 83 (94)
.++.|+|++ |++++..|..|..+++|+. .+..|..+..+++|++|++++|+ +++..|..+.
T Consensus 495 ~L~~L~Ls~--------N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~l~ 563 (635)
T 4g8a_A 495 NLTFLDLSQ--------CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH---IMTSKKQELQ 563 (635)
T ss_dssp TCCEEECTT--------SCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC---CCBCCSSCTT
T ss_pred ccCEEECCC--------CccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc---CCCCCHHHHH
Confidence 456666666 8888777888888888877 33345568888889999998888 8887788888
Q ss_pred CC-CCCcEEecC
Q 034444 84 NL-YSFTSFDTF 94 (94)
Q Consensus 84 ~l-~~L~~L~ls 94 (94)
.+ ++|++|+++
T Consensus 564 ~l~~~L~~L~L~ 575 (635)
T 4g8a_A 564 HFPSSLAFLNLT 575 (635)
T ss_dssp CCCTTCCEEECT
T ss_pred hhhCcCCEEEee
Confidence 77 578888874
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.78 E-value=7.4e-09 Score=74.25 Aligned_cols=72 Identities=17% Similarity=0.029 Sum_probs=45.3
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSL 82 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i 82 (94)
.+++.|++++ |.+++..+..+..+++|++ .+..|..|+++++|++|++++|+ +++..|..+
T Consensus 32 ~~l~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~---l~~~~p~~~ 100 (606)
T 3vq2_A 32 SSTKNIDLSF--------NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP---IQSFSPGSF 100 (606)
T ss_dssp TTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---CCCCCTTSS
T ss_pred CCcCEEECCC--------CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc---ccccChhhc
Confidence 4578888888 6666555556666666665 22234456666666666666666 665556666
Q ss_pred hCCCCCcEEec
Q 034444 83 GNLYSFTSFDT 93 (94)
Q Consensus 83 ~~l~~L~~L~l 93 (94)
+.+++|++|++
T Consensus 101 ~~l~~L~~L~L 111 (606)
T 3vq2_A 101 SGLTSLENLVA 111 (606)
T ss_dssp TTCTTCCEEEC
T ss_pred CCcccCCEEEc
Confidence 66666666665
No 33
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.78 E-value=1.5e-08 Score=68.47 Aligned_cols=68 Identities=18% Similarity=0.053 Sum_probs=43.8
Q ss_pred EEEEEeC-CCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHh-h
Q 034444 13 VIELKLG-NHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSS-L 82 (94)
Q Consensus 13 v~~L~l~-~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~-i 82 (94)
++.|+|+ + |.+++..+..|..+++|+. .+..|..|.++++|++|+|++|+ |++ +|+. +
T Consensus 33 L~~L~l~~~--------n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~---l~~-~~~~~~ 100 (347)
T 2ifg_A 33 LTELYIENQ--------QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA---LES-LSWKTV 100 (347)
T ss_dssp CSEEECCSC--------SSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC---CSC-CCSTTT
T ss_pred eeEEEccCC--------CCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc---cce-eCHHHc
Confidence 5666666 4 6777555566777777776 33444567778888888888887 773 4544 3
Q ss_pred hCCCCCcEEec
Q 034444 83 GNLYSFTSFDT 93 (94)
Q Consensus 83 ~~l~~L~~L~l 93 (94)
..+. |+.|+|
T Consensus 101 ~~~~-L~~l~l 110 (347)
T 2ifg_A 101 QGLS-LQELVL 110 (347)
T ss_dssp CSCC-CCEEEC
T ss_pred ccCC-ceEEEe
Confidence 3333 777765
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.78 E-value=8.2e-09 Score=74.04 Aligned_cols=73 Identities=12% Similarity=-0.099 Sum_probs=56.9
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSL 82 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i 82 (94)
..++.|++++ |.+++..|..+..+++|++ .+..|..|+++++|++|++++|+ +++..|..+
T Consensus 33 ~~l~~L~Ls~--------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~ 101 (606)
T 3t6q_A 33 NSTECLEFSF--------NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP---LIFMAETAL 101 (606)
T ss_dssp TTCCEEECTT--------CCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---CSEECTTTT
T ss_pred CcCcEEEccC--------CccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc---ccccChhhh
Confidence 4578899998 8888776778888888877 33456678888888888888888 877777788
Q ss_pred hCCCCCcEEecC
Q 034444 83 GNLYSFTSFDTF 94 (94)
Q Consensus 83 ~~l~~L~~L~ls 94 (94)
+.+++|++|+++
T Consensus 102 ~~l~~L~~L~L~ 113 (606)
T 3t6q_A 102 SGPKALKHLFFI 113 (606)
T ss_dssp SSCTTCCEEECT
T ss_pred cccccccEeecc
Confidence 888888888764
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.78 E-value=1.3e-08 Score=71.20 Aligned_cols=73 Identities=14% Similarity=-0.066 Sum_probs=48.1
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSL 82 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i 82 (94)
..++.|+|++ |.+.+..|..+..+++|+. .+..|..+..+++|++|++++|+ +++..+..+
T Consensus 75 ~~l~~L~L~~--------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~ 143 (452)
T 3zyi_A 75 SNTRYLNLME--------NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW---LTVIPSGAF 143 (452)
T ss_dssp TTCSEEECCS--------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CSBCCTTTS
T ss_pred CCccEEECcC--------CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc---CCccChhhh
Confidence 3578888888 7777666677777777776 22233556777777777777777 664333446
Q ss_pred hCCCCCcEEecC
Q 034444 83 GNLYSFTSFDTF 94 (94)
Q Consensus 83 ~~l~~L~~L~ls 94 (94)
..+++|++|+|+
T Consensus 144 ~~l~~L~~L~L~ 155 (452)
T 3zyi_A 144 EYLSKLRELWLR 155 (452)
T ss_dssp SSCTTCCEEECC
T ss_pred cccCCCCEEECC
Confidence 666777776653
No 36
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.77 E-value=1.4e-08 Score=64.09 Aligned_cols=73 Identities=16% Similarity=0.153 Sum_probs=59.2
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCC-chhhhcCCCCCeEeccCCCCCcccccChHhh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQI-PIYIASLENLRYLNLSNLSSGRLCGSIPSSL 82 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~i-P~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i 82 (94)
.+++.|++++ |.+++..+..|..+++|+. ...+ |..+..+++|++|++++|+ +++..+..+
T Consensus 54 ~~L~~L~Ls~--------N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~---l~~~~~~~~ 122 (193)
T 2wfh_A 54 KHLTLIDLSN--------NRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND---ISVVPEGAF 122 (193)
T ss_dssp TTCCEEECCS--------SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC---CCBCCTTTT
T ss_pred cCCCEEECCC--------CcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC---CCeeChhhh
Confidence 4688999999 9999766677888988887 3334 4579999999999999999 984333468
Q ss_pred hCCCCCcEEecC
Q 034444 83 GNLYSFTSFDTF 94 (94)
Q Consensus 83 ~~l~~L~~L~ls 94 (94)
..+++|+.|+++
T Consensus 123 ~~l~~L~~L~L~ 134 (193)
T 2wfh_A 123 NDLSALSHLAIG 134 (193)
T ss_dssp TTCTTCCEEECC
T ss_pred hcCccccEEEeC
Confidence 899999999874
No 37
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.77 E-value=1.3e-08 Score=64.02 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=31.9
Q ss_pred cceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 29 AELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
|.+++..|..+..+++|++ .+..|..++.+++|++|++++|+ +.+.+| .+..+++|+.|++
T Consensus 98 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~---~i~~~~-~l~~l~~L~~L~l 166 (197)
T 4ezg_A 98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG---AITDIM-PLKTLPELKSLNI 166 (197)
T ss_dssp TTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT---BCCCCG-GGGGCSSCCEEEC
T ss_pred CccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC---CccccH-hhcCCCCCCEEEC
Confidence 5555545555555555554 22334455555555555555554 444444 3555555555554
No 38
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.76 E-value=1.2e-08 Score=61.47 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=18.1
Q ss_pred hhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 54 YIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 54 ~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
.++.+++|++|++++|+ +++.+|..++.+++|++|++
T Consensus 59 ~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 59 NLPKLNKLKKLELSDNR---VSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp TCCCCTTCCEEECCSSC---CCSCTHHHHHHCTTCCEEEC
T ss_pred hhhcCCCCCEEECCCCc---ccchHHHHhhhCCCCCEEEC
Confidence 34444555555555555 44444444444555555544
No 39
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.76 E-value=1.8e-08 Score=65.03 Aligned_cols=41 Identities=24% Similarity=0.201 Sum_probs=21.7
Q ss_pred CCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 50 QIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 50 ~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
.+|..+..+++|++|++++|+ +++..+..+..+++|+.|++
T Consensus 126 ~lp~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 126 ELPRGIERLTHLTHLALDQNQ---LKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp SCCTTGGGCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcccccCCCCCEEECCCCc---CCccCHHHHhCCCCCCEEEe
Confidence 455555555555555555555 55322234555555555554
No 40
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.75 E-value=5.4e-09 Score=70.03 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=47.1
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccc--cCCcCccc-------ccCCchhhhcC-----CCCCeEeccCCCCCcccc
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSK--LVGKHLIH-------GIQIPIYIASL-----ENLRYLNLSNLSSGRLCG 76 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l--~~l~~L~~-------~~~iP~~i~~l-----~~L~~L~ls~N~~~~l~g 76 (94)
.+++.|++++ |.+++.+|..+ ..+++|++ ...+|..++.+ ++|++|++++|+ +++
T Consensus 95 ~~L~~L~L~~--------n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~---l~~ 163 (312)
T 1wwl_A 95 SGLQELTLEN--------LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH---SLN 163 (312)
T ss_dssp SCCCEEEEEE--------EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS---CCC
T ss_pred CCccEEEccC--------CcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC---Ccc
Confidence 3567777777 77777777765 66666665 22336556655 677777777777 665
Q ss_pred cChHhhhCCCCCcEEecC
Q 034444 77 SIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 77 ~iP~~i~~l~~L~~L~ls 94 (94)
..|..++.+++|++|+++
T Consensus 164 ~~~~~~~~l~~L~~L~Ls 181 (312)
T 1wwl_A 164 FSCEQVRVFPALSTLDLS 181 (312)
T ss_dssp CCTTTCCCCSSCCEEECC
T ss_pred chHHHhccCCCCCEEECC
Confidence 555666666667666653
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.75 E-value=1.5e-08 Score=70.37 Aligned_cols=62 Identities=18% Similarity=0.114 Sum_probs=31.7
Q ss_pred cceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 29 AELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
|.+.+..|..+..+++|+. .+..|..+..+++|++|++++|+ +++..|..++.+++|++|++
T Consensus 309 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 309 NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH---IRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEEC
T ss_pred CcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc---ccccChhhccccccccEEEC
Confidence 5555444445555555544 12223445555555555555555 55444555555555555554
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.74 E-value=3e-08 Score=67.22 Aligned_cols=71 Identities=24% Similarity=0.152 Sum_probs=44.4
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHh-h
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSS-L 82 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~-i 82 (94)
.++.|++++ |.+++..+..+..+++|+. .+..|..+.++++|++|++++|+ +++ +|.. +
T Consensus 53 ~L~~L~l~~--------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~-~~~~~~ 120 (353)
T 2z80_A 53 AVKSLDLSN--------NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY---LSN-LSSSWF 120 (353)
T ss_dssp TCCEEECTT--------SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CSS-CCHHHH
T ss_pred cCcEEECCC--------CcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc---CCc-CCHhHh
Confidence 577888888 7776544446666666666 22234456667777777777777 663 4433 6
Q ss_pred hCCCCCcEEecC
Q 034444 83 GNLYSFTSFDTF 94 (94)
Q Consensus 83 ~~l~~L~~L~ls 94 (94)
+.+++|++|+++
T Consensus 121 ~~l~~L~~L~L~ 132 (353)
T 2z80_A 121 KPLSSLTFLNLL 132 (353)
T ss_dssp TTCTTCSEEECT
T ss_pred CCCccCCEEECC
Confidence 667777776653
No 43
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.74 E-value=1.4e-08 Score=73.56 Aligned_cols=68 Identities=21% Similarity=0.158 Sum_probs=60.3
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhC
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGN 84 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~ 84 (94)
.++.|++++ |.+++ +|. ++.+++|+. ...+|..++.+++|+.|+|++|+ +++ +| .++.
T Consensus 442 ~L~~L~Ls~--------n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~---l~~-lp-~l~~ 506 (567)
T 1dce_A 442 DVRVLHLAH--------KDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA---LEN-VD-GVAN 506 (567)
T ss_dssp TCSEEECTT--------SCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC---CCC-CG-GGTT
T ss_pred CceEEEecC--------CCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC---CCC-Cc-ccCC
Confidence 367899999 99985 776 888888887 45899999999999999999999 995 88 8999
Q ss_pred CCCCcEEecC
Q 034444 85 LYSFTSFDTF 94 (94)
Q Consensus 85 l~~L~~L~ls 94 (94)
+++|+.|+|+
T Consensus 507 l~~L~~L~Ls 516 (567)
T 1dce_A 507 LPRLQELLLC 516 (567)
T ss_dssp CSSCCEEECC
T ss_pred CCCCcEEECC
Confidence 9999999985
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.74 E-value=1.6e-08 Score=72.53 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=44.0
Q ss_pred cceeeeCCccccCCcCccc-------ccCCc-hhhhcCCCCCeEeccCCCCCcccc-cChHhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH-------GIQIP-IYIASLENLRYLNLSNLSSGRLCG-SIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~-------~~~iP-~~i~~l~~L~~L~ls~N~~~~l~g-~iP~~i~~l~~L~~L~ls 94 (94)
|.+.+..|..+..+++|++ ...+| ..++++++|++|++++|+ +++ .+|..++++++|++|+++
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF---IHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC---CCCCCCCGGGGTCTTCCEEECC
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc---ccceechHhHhhcCCCCEEEcc
Confidence 7776555666777777666 12233 457777788888888887 764 678888888888888764
No 45
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.74 E-value=1.9e-08 Score=65.44 Aligned_cols=71 Identities=15% Similarity=0.032 Sum_probs=32.3
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLG 83 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~ 83 (94)
.++.|++++ |.+.+..+..+..+++|++ .+..|..+..+++|++|++++|+ +++..|..+.
T Consensus 36 ~l~~L~L~~--------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~ 104 (251)
T 3m19_A 36 DTEKLDLQS--------TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ---LASLPLGVFD 104 (251)
T ss_dssp TCCEEECTT--------SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC---CCCCCTTTTT
T ss_pred CCCEEEccC--------CCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc---ccccChhHhc
Confidence 356667766 5555444444554554444 12222234444444444444444 4432223334
Q ss_pred CCCCCcEEec
Q 034444 84 NLYSFTSFDT 93 (94)
Q Consensus 84 ~l~~L~~L~l 93 (94)
.+++|++|++
T Consensus 105 ~l~~L~~L~L 114 (251)
T 3m19_A 105 HLTQLDKLYL 114 (251)
T ss_dssp TCTTCCEEEC
T ss_pred ccCCCCEEEc
Confidence 4444444443
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.74 E-value=2e-08 Score=70.36 Aligned_cols=70 Identities=26% Similarity=0.223 Sum_probs=35.5
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChH-hh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPS-SL 82 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~-~i 82 (94)
.++.|++++ |.+++..|..+..+++|++ .+..|..+.++++|++|++++|+ ++ .+|. .+
T Consensus 33 ~l~~L~L~~--------n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~-~~~~~~~ 100 (477)
T 2id5_A 33 ETRLLDLGK--------NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR---LK-LIPLGVF 100 (477)
T ss_dssp TCSEEECCS--------SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CC-SCCTTSS
T ss_pred CCcEEECCC--------CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc---CC-ccCcccc
Confidence 567788888 5555444455555555554 12224445555555555555555 44 2332 23
Q ss_pred hCCCCCcEEec
Q 034444 83 GNLYSFTSFDT 93 (94)
Q Consensus 83 ~~l~~L~~L~l 93 (94)
+.+++|++|++
T Consensus 101 ~~l~~L~~L~L 111 (477)
T 2id5_A 101 TGLSNLTKLDI 111 (477)
T ss_dssp TTCTTCCEEEC
T ss_pred cCCCCCCEEEC
Confidence 44444444444
No 47
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=6.3e-09 Score=78.86 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=47.3
Q ss_pred cEEEEEeCCCCCCCCcccceee-----------------eCCcccc--CCcCccc--------ccCCchhhhcCCCCCeE
Q 034444 12 RVIELKLGNHFTYIGSVAELHA-----------------NYRKSKL--VGKHLIH--------GIQIPIYIASLENLRYL 64 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g-----------------~~p~~l~--~l~~L~~--------~~~iP~~i~~l~~L~~L 64 (94)
.++.|+|++ |.++| .+|++++ .+++|+. .+.+|..++++++|+.|
T Consensus 449 ~L~~L~Ls~--------N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 449 KLQIIYFAN--------SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp TCCEEEEES--------CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred CCCEEECcC--------CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 466677777 77776 3777766 7777766 45677777777777777
Q ss_pred eccCCCCCcccc-cChHhhhCCC-------CCcEEecC
Q 034444 65 NLSNLSSGRLCG-SIPSSLGNLY-------SFTSFDTF 94 (94)
Q Consensus 65 ~ls~N~~~~l~g-~iP~~i~~l~-------~L~~L~ls 94 (94)
++++|+. ++| .+|+.++.++ +|+.|+++
T Consensus 521 ~Ls~N~~--lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 521 NIACNRG--ISAAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp ECTTCTT--SCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred ECcCCCC--cccccchHHHHhhhhcccccCCccEEEee
Confidence 7777631 555 5666655544 66666653
No 48
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.71 E-value=3.5e-08 Score=60.42 Aligned_cols=38 Identities=26% Similarity=0.192 Sum_probs=18.0
Q ss_pred hhhhcCCCCCeEeccCCCCCcccccCh---HhhhCCCCCcEEec
Q 034444 53 IYIASLENLRYLNLSNLSSGRLCGSIP---SSLGNLYSFTSFDT 93 (94)
Q Consensus 53 ~~i~~l~~L~~L~ls~N~~~~l~g~iP---~~i~~l~~L~~L~l 93 (94)
..+..+++|+.|++++|. +++..+ ..+..+++|++|++
T Consensus 114 ~~l~~l~~L~~L~l~~N~---l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 114 EPLKKLECLKSLDLFNCE---VTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp GGGSSCSCCCEEECCSSG---GGTSTTHHHHHHTTCSSCCEETT
T ss_pred HHHhcCCCCCEEEeeCCc---CcchHHHHHHHHHhCccCcEecC
Confidence 344555555555555555 542222 24455555555543
No 49
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.70 E-value=3.1e-08 Score=64.41 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=21.6
Q ss_pred hhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 55 IASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 55 i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
+..+++|+.|++++|+ +++..|..++.+++|++|+|+
T Consensus 127 ~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 127 FDRLTKLKELRLNTNQ---LQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECC
T ss_pred hccCCcccEEECcCCc---CCccCHHHcCcCcCCCEEECC
Confidence 4556666666666666 653333356666666666653
No 50
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.69 E-value=3.5e-08 Score=60.98 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=56.5
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCch-hhhcCCCCCeEeccCCCCCcccccChHh-
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPI-YIASLENLRYLNLSNLSSGRLCGSIPSS- 81 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~-~i~~l~~L~~L~ls~N~~~~l~g~iP~~- 81 (94)
..++.|++++ |.+++..+..+..+++|+. ...+|+ .+..+++|++|++++|+ +++ +|..
T Consensus 52 ~~L~~L~l~~--------n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~---l~~-~~~~~ 119 (177)
T 2o6r_A 52 TQLTKLSLSQ--------NQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ---LKS-VPDGI 119 (177)
T ss_dssp TTCSEEECCS--------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CSC-CCTTT
T ss_pred ccccEEECCC--------CcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCc---ceE-eCHHH
Confidence 4688999999 9998544455688888887 334555 47899999999999999 984 5554
Q ss_pred hhCCCCCcEEecC
Q 034444 82 LGNLYSFTSFDTF 94 (94)
Q Consensus 82 i~~l~~L~~L~ls 94 (94)
+..+++|++|+++
T Consensus 120 ~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 120 FDRLTSLQKIWLH 132 (177)
T ss_dssp TTTCTTCCEEECC
T ss_pred hcCCcccCEEEec
Confidence 6889999999974
No 51
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.68 E-value=2.1e-08 Score=67.75 Aligned_cols=67 Identities=13% Similarity=0.104 Sum_probs=56.4
Q ss_pred EEEeCCCCCCCCccc-ceeeeCCccccCCcCccc--------ccCCc-hhhhcCCCCCeEeccCCCCCcccccChHhhhC
Q 034444 15 ELKLGNHFTYIGSVA-ELHANYRKSKLVGKHLIH--------GIQIP-IYIASLENLRYLNLSNLSSGRLCGSIPSSLGN 84 (94)
Q Consensus 15 ~L~l~~~~~~~~~~n-~l~g~~p~~l~~l~~L~~--------~~~iP-~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~ 84 (94)
.+++++ + .++ .+|. +..+++|+. ...+| ..|+.+++|+.|+|++|+ +++..|..|+.
T Consensus 12 ~v~~~~--------~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~---l~~~~~~~~~~ 78 (347)
T 2ifg_A 12 GLRCTR--------DGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG---LRFVAPDAFHF 78 (347)
T ss_dssp CEECCS--------SCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC---CCEECTTGGGS
T ss_pred EEEcCC--------CCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc---cceeCHHHhcC
Confidence 457777 7 888 6898 888888877 22455 579999999999999999 99888889999
Q ss_pred CCCCcEEecC
Q 034444 85 LYSFTSFDTF 94 (94)
Q Consensus 85 l~~L~~L~ls 94 (94)
+++|+.|||+
T Consensus 79 l~~L~~L~l~ 88 (347)
T 2ifg_A 79 TPRLSRLNLS 88 (347)
T ss_dssp CSCCCEEECC
T ss_pred CcCCCEEeCC
Confidence 9999999985
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.68 E-value=4.1e-08 Score=64.40 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=43.4
Q ss_pred cceeeeCCccccCCcCccc-------ccCCch-hhhcCCCCCeEeccCCCCCcccc-cChHhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH-------GIQIPI-YIASLENLRYLNLSNLSSGRLCG-SIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~-------~~~iP~-~i~~l~~L~~L~ls~N~~~~l~g-~iP~~i~~l~~L~~L~ls 94 (94)
|.+.+..+..+..+++|++ ...++. .++.+++|++|++++|+ +++ .+|..++.+++|++|+++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL---IQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC---CCCCCCCGGGGGCTTCCEEECC
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc---cceecCchhhccCCCCCEEECC
Confidence 7777655566666666665 223333 57777888888888888 765 367788888888888764
No 53
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.67 E-value=1.6e-08 Score=71.45 Aligned_cols=61 Identities=16% Similarity=0.083 Sum_probs=41.7
Q ss_pred cceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccc-cChHhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCG-SIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g-~iP~~i~~l~~L~~L~ls 94 (94)
|.+++..|..+..+++|++ ...+|.. .+++|++|++++|+ +++ .+|..++.+++|++|+++
T Consensus 55 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~---l~~~~~p~~~~~l~~L~~L~L~ 123 (520)
T 2z7x_B 55 NRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNA---FDALPICKEFGNMSQLKFLGLS 123 (520)
T ss_dssp SCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSC---CSSCCCCGGGGGCTTCCEEEEE
T ss_pred CccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCc---cccccchhhhccCCcceEEEec
Confidence 6776655666666666666 2345555 67777777777777 765 567777888888877763
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.67 E-value=2.7e-08 Score=66.09 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=29.2
Q ss_pred cceeeeCCccccCCcCccc--------cc-CCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 29 AELHANYRKSKLVGKHLIH--------GI-QIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~--------~~-~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
|.+.+..+..+..+++|+. .+ .+|..+..+++|++|++++|+ +++..|..++.+++|+.|++
T Consensus 136 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ---LEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp SCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEEC
T ss_pred CcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC---cCCcCHHHhcCCCCCCEEEC
Confidence 5554444444444444444 11 244444555555555555555 44444444455555555544
No 55
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.66 E-value=4.9e-08 Score=61.65 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=20.2
Q ss_pred hhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 55 IASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 55 i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
+..+++|++|++++|+ +++..+..+..+++|++|++
T Consensus 120 ~~~l~~L~~L~l~~N~---l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 120 FDKLTQLKDLRLYQNQ---LKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp TTTCTTCCEEECCSSC---CSCCCTTTTTTCTTCCEEEC
T ss_pred hccCCcCCEEECCCCc---cceeCHHHhccCCCccEEEe
Confidence 4556666666666666 55333333555666666655
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.66 E-value=2.6e-08 Score=70.69 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=31.0
Q ss_pred cceeeeCCccccCCcCccc--------c-cCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 29 AELHANYRKSKLVGKHLIH--------G-IQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~--------~-~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
|.+.+..|..+..+++|+. . +.+|..+..+++|++|++++|+ +++..|..++.+++|++|++
T Consensus 431 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ---LEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEEC
T ss_pred CcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc---cccCChhhhhcccCCCEEeC
Confidence 5555444444444444444 1 2345455555555555555555 55444555555555555544
No 57
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.66 E-value=2.5e-08 Score=70.68 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=58.5
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCch-hhhcCCCCCeEeccCCCCCcccc-cChHh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPI-YIASLENLRYLNLSNLSSGRLCG-SIPSS 81 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~-~i~~l~~L~~L~ls~N~~~~l~g-~iP~~ 81 (94)
.+++.|++++ |.+++..|..+..+++|++ ...+|+ .++.+++|++|++++|+ +++ .+|..
T Consensus 50 ~~L~~L~Ls~--------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~ 118 (549)
T 2z81_A 50 ANLQVLILKS--------SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP---YQTLGVTSL 118 (549)
T ss_dssp TTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC---CSSSCSSCS
T ss_pred CcccEEECCC--------CCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc---ccccchhhh
Confidence 4688899998 9999877788888888887 233444 58999999999999999 875 46777
Q ss_pred hhCCCCCcEEecC
Q 034444 82 LGNLYSFTSFDTF 94 (94)
Q Consensus 82 i~~l~~L~~L~ls 94 (94)
++.+++|++|+++
T Consensus 119 ~~~l~~L~~L~L~ 131 (549)
T 2z81_A 119 FPNLTNLQTLRIG 131 (549)
T ss_dssp CTTCTTCCEEEEE
T ss_pred hhccCCccEEECC
Confidence 8888888888863
No 58
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.65 E-value=5.3e-08 Score=64.04 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=16.7
Q ss_pred hhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 55 IASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 55 i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
++.+++|+.|++++|+ +++..|..++.+++|++|++
T Consensus 153 ~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQ---LQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEEC
T ss_pred hccCccCCEEECCCCC---cCccCHHHhcCCccCCEEEC
Confidence 3444555555555554 44333333444455555544
No 59
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.65 E-value=5.4e-08 Score=64.00 Aligned_cols=72 Identities=17% Similarity=0.073 Sum_probs=54.1
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCch-hhhcCCCCCeEeccCCCCCcccccChHhhh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPI-YIASLENLRYLNLSNLSSGRLCGSIPSSLG 83 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~-~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~ 83 (94)
.++.|++++ |.+++..+..+..+++|+. ...+|+ .++.+++|+.|++++|+ +++..|..++
T Consensus 134 ~L~~L~L~~--------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~ 202 (272)
T 3rfs_A 134 NLTYLNLAH--------NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ---LKSVPDGVFD 202 (272)
T ss_dssp TCCEEECCS--------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CSCCCTTTTT
T ss_pred CCCEEECCC--------CccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc---CCccCHHHHh
Confidence 345555555 8888554455677777776 234444 57899999999999999 9987777789
Q ss_pred CCCCCcEEecC
Q 034444 84 NLYSFTSFDTF 94 (94)
Q Consensus 84 ~l~~L~~L~ls 94 (94)
.+++|+.|+++
T Consensus 203 ~l~~L~~L~l~ 213 (272)
T 3rfs_A 203 RLTSLQYIWLH 213 (272)
T ss_dssp TCTTCCEEECC
T ss_pred CCcCCCEEEcc
Confidence 99999999974
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.64 E-value=6.6e-08 Score=63.65 Aligned_cols=63 Identities=14% Similarity=0.004 Sum_probs=37.3
Q ss_pred cceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
|.+++..+..+..+++|+. .+..|..+..+++|+.|++++|+ +++..|..+..+++|+.|+++
T Consensus 163 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN---LSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CSCCCHHHHTTCTTCCEEECC
T ss_pred CcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc---CCcCCHHHcccCcccCEEecc
Confidence 6665333334555555554 23345566667777777777777 665444556677777777653
No 61
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.64 E-value=4.3e-08 Score=60.65 Aligned_cols=34 Identities=32% Similarity=0.335 Sum_probs=18.0
Q ss_pred hcCCCCCeEeccCCCCCcccccChH--hhhCCCCCcEEec
Q 034444 56 ASLENLRYLNLSNLSSGRLCGSIPS--SLGNLYSFTSFDT 93 (94)
Q Consensus 56 ~~l~~L~~L~ls~N~~~~l~g~iP~--~i~~l~~L~~L~l 93 (94)
..+++|++|++++|+ ++ .+|. .++.+++|+.|++
T Consensus 85 ~~l~~L~~L~L~~N~---i~-~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 85 QALPDLTELILTNNS---LV-ELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp HHCTTCCEEECCSCC---CC-CGGGGGGGGGCTTCCEEEC
T ss_pred hcCCCCCEEECCCCc---CC-cchhhHhhhcCCCCCEEEe
Confidence 555555555555555 43 4444 4555555555554
No 62
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.63 E-value=4.5e-08 Score=61.59 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=48.7
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLG 83 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~ 83 (94)
.++.|++++ |.+. .++.+..+++|++ .+..|..++.+++|++|++++|+ +++..|..++
T Consensus 67 ~L~~L~l~~--------n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~---i~~~~~~~l~ 133 (197)
T 4ezg_A 67 NIKDLTINN--------IHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA---HDDSILTKIN 133 (197)
T ss_dssp TCSEEEEES--------CCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB---CBGGGHHHHT
T ss_pred CCCEEEccC--------CCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc---cCcHhHHHHh
Confidence 345555555 6443 3345666666666 33456678888888888888888 8877788888
Q ss_pred CCCCCcEEecC
Q 034444 84 NLYSFTSFDTF 94 (94)
Q Consensus 84 ~l~~L~~L~ls 94 (94)
.+++|++|+++
T Consensus 134 ~l~~L~~L~L~ 144 (197)
T 4ezg_A 134 TLPKVNSIDLS 144 (197)
T ss_dssp TCSSCCEEECC
T ss_pred hCCCCCEEEcc
Confidence 88888888874
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.63 E-value=3.4e-08 Score=69.74 Aligned_cols=73 Identities=15% Similarity=0.059 Sum_probs=59.3
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------cc--CCchhhhcCCCCCeEeccCCCCCcccccChH
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GI--QIPIYIASLENLRYLNLSNLSSGRLCGSIPS 80 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~--~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~ 80 (94)
..++.+++++ |.+++.+|..+..+++|+. .+ .+|..++.+++|++|++++|+ +++.+|.
T Consensus 324 ~~L~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~---l~~~l~~ 392 (520)
T 2z7x_B 324 SPFLHLDFSN--------NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS---VSYDEKK 392 (520)
T ss_dssp CCCCEEECCS--------SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC---CBCCGGG
T ss_pred CcccEEEeEC--------CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc---CCccccc
Confidence 4578888888 9999888888888888887 22 566778999999999999999 8877887
Q ss_pred h-hhCCCCCcEEecC
Q 034444 81 S-LGNLYSFTSFDTF 94 (94)
Q Consensus 81 ~-i~~l~~L~~L~ls 94 (94)
. +..+++|++|+++
T Consensus 393 ~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMS 407 (520)
T ss_dssp CSCCCCTTCCEEECC
T ss_pred chhccCccCCEEECc
Confidence 5 6777888888764
No 64
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.63 E-value=5.1e-08 Score=65.42 Aligned_cols=71 Identities=20% Similarity=0.136 Sum_probs=53.6
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLG 83 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~ 83 (94)
.++.|++++ |.+.+..|..+..+++|+. .+..|..+..+++|+.|++++|+ ++ .+|..+.
T Consensus 193 ~L~~L~l~~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~---l~-~lp~~l~ 260 (330)
T 1xku_A 193 SLTELHLDG--------NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK---LV-KVPGGLA 260 (330)
T ss_dssp TCSEEECTT--------SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC---CS-SCCTTTT
T ss_pred cCCEEECCC--------CcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc---Cc-cCChhhc
Confidence 355566666 8888777777888888776 22334468888889999999888 87 7888888
Q ss_pred CCCCCcEEecC
Q 034444 84 NLYSFTSFDTF 94 (94)
Q Consensus 84 ~l~~L~~L~ls 94 (94)
.+++|++|+++
T Consensus 261 ~l~~L~~L~l~ 271 (330)
T 1xku_A 261 DHKYIQVVYLH 271 (330)
T ss_dssp TCSSCCEEECC
T ss_pred cCCCcCEEECC
Confidence 88888888874
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.63 E-value=7.6e-08 Score=63.36 Aligned_cols=62 Identities=16% Similarity=0.015 Sum_probs=29.7
Q ss_pred cceeeeCCccccCCcCccc--------ccCC-chhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 29 AELHANYRKSKLVGKHLIH--------GIQI-PIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~--------~~~i-P~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
|.+.+..|..+..+++|++ .+.+ |..+..+++|++|++++|+ +++..|..+..+++|++|++
T Consensus 66 n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l 136 (285)
T 1ozn_A 66 NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG---LQELGPGLFRGLAALQYLYL 136 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC---CCCCCTTTTTTCTTCCEEEC
T ss_pred CccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc---CCEECHhHhhCCcCCCEEEC
Confidence 5555444444555544444 1122 3345555555555555555 55444444555555555554
No 66
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.62 E-value=5.5e-08 Score=66.40 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=14.4
Q ss_pred hhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 55 IASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 55 i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
+..+++|+.|+|++|+ +++..|..+..+++|+.|+|
T Consensus 108 ~~~l~~L~~L~L~~N~---i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 108 FSDLQALEVLLLYNNH---IVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp TTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEEC
T ss_pred hCCCcCCCEEECCCCc---ccEECHHHhCCcccCCEEEC
Confidence 3344444444444444 33333333444444444433
No 67
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.62 E-value=5.9e-08 Score=70.14 Aligned_cols=63 Identities=13% Similarity=-0.041 Sum_probs=42.6
Q ss_pred cceeeeCCccccCCcCccc-------ccCCchh-hhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH-------GIQIPIY-IASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~-------~~~iP~~-i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
|.+.+..|..++.+++|++ ...+|+. ++.+++|++|++++|. +++..|..++.+++|++|+++
T Consensus 109 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN---LERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCBCCTTTTTTCTTCCEEECT
T ss_pred CcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc---CCCCChhhhhcCCcCcEEECc
Confidence 6676555555666666665 3355554 4777777777777777 776666677777777777764
No 68
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.62 E-value=8.5e-08 Score=59.34 Aligned_cols=68 Identities=15% Similarity=0.035 Sum_probs=53.4
Q ss_pred EEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhC
Q 034444 13 VIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGN 84 (94)
Q Consensus 13 v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~ 84 (94)
.+.+++++ |.++ .+|..+. +.|+. .+..|..+..+++|++|++++|+ +++..|..+..
T Consensus 11 ~~~l~~s~--------n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~---l~~l~~~~f~~ 76 (170)
T 3g39_A 11 GTTVDCSG--------KSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ---LTVLPAGVFDK 76 (170)
T ss_dssp TTEEECTT--------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC---CCCCCTTTTTT
T ss_pred CCEEEeCC--------CCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC---cCccChhhccC
Confidence 46789999 9998 6887664 44444 34446779999999999999999 99544455789
Q ss_pred CCCCcEEecC
Q 034444 85 LYSFTSFDTF 94 (94)
Q Consensus 85 l~~L~~L~ls 94 (94)
+++|++|+|+
T Consensus 77 l~~L~~L~L~ 86 (170)
T 3g39_A 77 LTQLTQLSLN 86 (170)
T ss_dssp CTTCCEEECC
T ss_pred CCCCCEEECC
Confidence 9999999985
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.61 E-value=6e-08 Score=63.58 Aligned_cols=71 Identities=18% Similarity=0.013 Sum_probs=45.9
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCc-hhhhcCCCCCeEeccCCCCCcccccChHhhh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIP-IYIASLENLRYLNLSNLSSGRLCGSIPSSLG 83 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP-~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~ 83 (94)
.++.|++++ |.+++..+..+..+++|++ ...+| ..+..+++|++|++++|+ +++..|..+.
T Consensus 29 ~l~~L~ls~--------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~ 97 (276)
T 2z62_A 29 STKNLDLSF--------NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP---IQSLALGAFS 97 (276)
T ss_dssp TCCEEECTT--------CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTT
T ss_pred CccEEECCC--------CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc---cCccChhhhc
Confidence 478888888 7777554456666666666 22233 356667777777777777 6655555666
Q ss_pred CCCCCcEEec
Q 034444 84 NLYSFTSFDT 93 (94)
Q Consensus 84 ~l~~L~~L~l 93 (94)
.+++|++|++
T Consensus 98 ~l~~L~~L~l 107 (276)
T 2z62_A 98 GLSSLQKLVA 107 (276)
T ss_dssp TCTTCCEEEC
T ss_pred CCccccEEEC
Confidence 6666666665
No 70
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.61 E-value=8.9e-08 Score=59.56 Aligned_cols=66 Identities=20% Similarity=0.168 Sum_probs=52.8
Q ss_pred EEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHh-hhC
Q 034444 14 IELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSS-LGN 84 (94)
Q Consensus 14 ~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~-i~~ 84 (94)
+.+++++ |.+. .+|..+. +.|+. .+..|..+..+++|++|+|++|+ +++ +|.. +..
T Consensus 15 ~~l~~~~--------n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~-i~~~~~~~ 79 (174)
T 2r9u_A 15 TLVNCQN--------IRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK---LTA-IPTGVFDK 79 (174)
T ss_dssp SEEECCS--------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCC-CCTTTTTT
T ss_pred cEEEeCC--------CCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC---CCc-cChhHhCC
Confidence 5789999 9986 7888664 45554 34446789999999999999999 995 5554 689
Q ss_pred CCCCcEEecC
Q 034444 85 LYSFTSFDTF 94 (94)
Q Consensus 85 l~~L~~L~ls 94 (94)
+++|++|+|+
T Consensus 80 l~~L~~L~L~ 89 (174)
T 2r9u_A 80 LTQLTQLDLN 89 (174)
T ss_dssp CTTCCEEECC
T ss_pred cchhhEEECC
Confidence 9999999985
No 71
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.60 E-value=8.6e-08 Score=63.61 Aligned_cols=62 Identities=15% Similarity=0.040 Sum_probs=34.1
Q ss_pred cceeeeCCccccCCcCccc-------ccCC-chhhhcCCCCCeEeccCCCCCcccccChHhhhCCC-CCcEEec
Q 034444 29 AELHANYRKSKLVGKHLIH-------GIQI-PIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLY-SFTSFDT 93 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~-------~~~i-P~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~-~L~~L~l 93 (94)
|.+++..|..+..+++|+. ...+ +..+..+++|++|++++|+ +++..|..+..++ +|++|++
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH---IMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC---CCBCSSSSCCCCCTTCCEEEC
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC---CcccCHHHHHhhhccCCEEEc
Confidence 5555544555555555554 1122 2245566666666666666 6655565565553 6666665
No 72
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.60 E-value=8.3e-08 Score=65.71 Aligned_cols=63 Identities=13% Similarity=-0.041 Sum_probs=39.4
Q ss_pred cceeeeCCccccCCcCccc-------ccCCchh-hhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH-------GIQIPIY-IASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~-------~~~iP~~-i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
|.+.+..|..+..+++|++ ...+|.. +.++++|++|++++|+ +++..|..++.+++|++|+++
T Consensus 103 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN---LERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCBCCTTTTSSCTTCCEEECC
T ss_pred CCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc---cCccChhhccCCCCCCEEECC
Confidence 6666544455666666665 3355554 3667777777777777 665555566677777777653
No 73
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.59 E-value=5.1e-08 Score=69.75 Aligned_cols=60 Identities=20% Similarity=0.143 Sum_probs=33.2
Q ss_pred cceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccc-cChHhhhCCCCCcEEec
Q 034444 29 AELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCG-SIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g-~iP~~i~~l~~L~~L~l 93 (94)
|.+++..|..+..+++|++ ...+|.. .+++|++|++++|+ +++ .+|..++++++|++|++
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~---l~~l~~p~~~~~l~~L~~L~L 153 (562)
T 3a79_B 86 NRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND---FDVLPVCKEFGNLTKLTFLGL 153 (562)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC---CSBCCCCGGGGGCTTCCEEEE
T ss_pred CCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC---ccccCchHhhcccCcccEEec
Confidence 5555444444555555554 2234444 55666666666666 554 34466666666666665
No 74
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.59 E-value=1.3e-07 Score=65.96 Aligned_cols=72 Identities=18% Similarity=-0.011 Sum_probs=44.2
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCC-chhhhcCCCCCeEeccCCCCCcccccChHhhh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQI-PIYIASLENLRYLNLSNLSSGRLCGSIPSSLG 83 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~i-P~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~ 83 (94)
.++.|+|++ |.+.+..+..+..+++|+. ...+ |..+..+++|++|++++|+ +++..+..+.
T Consensus 65 ~l~~L~L~~--------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~ 133 (440)
T 3zyj_A 65 NTRLLNLHE--------NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR---LTTIPNGAFV 133 (440)
T ss_dssp TCSEEECCS--------CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC---CSSCCTTTSC
T ss_pred CCcEEEccC--------CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc---CCeeCHhHhh
Confidence 466777777 7777655666777766666 1222 3456667777777777776 6633333466
Q ss_pred CCCCCcEEecC
Q 034444 84 NLYSFTSFDTF 94 (94)
Q Consensus 84 ~l~~L~~L~ls 94 (94)
.+++|++|+++
T Consensus 134 ~l~~L~~L~L~ 144 (440)
T 3zyj_A 134 YLSKLKELWLR 144 (440)
T ss_dssp SCSSCCEEECC
T ss_pred ccccCceeeCC
Confidence 66666666653
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.59 E-value=5.9e-08 Score=68.89 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=60.1
Q ss_pred cEEEEEeCCCCCCCCccccee-eeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhh
Q 034444 12 RVIELKLGNHFTYIGSVAELH-ANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSL 82 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~-g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i 82 (94)
.++.|++++ |.+. +.+|..+..+++|+. .+..|..+.++++|++|++++|+ +++..|..+
T Consensus 446 ~L~~L~l~~--------n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~ 514 (570)
T 2z63_A 446 SLEVLKMAG--------NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ---LKSVPDGIF 514 (570)
T ss_dssp TCCEEECTT--------CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CSCCCTTTT
T ss_pred cCcEEECcC--------CcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc---CCCCCHHHh
Confidence 355555555 9997 678999999999987 44558889999999999999999 998777788
Q ss_pred hCCCCCcEEecC
Q 034444 83 GNLYSFTSFDTF 94 (94)
Q Consensus 83 ~~l~~L~~L~ls 94 (94)
..+++|+.|+++
T Consensus 515 ~~l~~L~~L~l~ 526 (570)
T 2z63_A 515 DRLTSLQKIWLH 526 (570)
T ss_dssp TTCTTCCEEECC
T ss_pred hcccCCcEEEec
Confidence 999999999975
No 76
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.58 E-value=5.3e-08 Score=65.47 Aligned_cols=62 Identities=21% Similarity=0.166 Sum_probs=48.4
Q ss_pred cceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
|.+.+..+..+..+++|+. .+..|..+..+++|+.|++++|+ ++ .+|..++.+++|++|+++
T Consensus 203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~---l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK---LS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC---CC-BCCTTGGGCTTCCEEECC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc---Ce-ecChhhhcCccCCEEECC
Confidence 8887666677777777776 23334478888999999999998 87 788888888899888874
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.58 E-value=1.5e-07 Score=62.76 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=18.0
Q ss_pred hhcCCCCCeEeccCCCCCcccccChHh-hhCCCCCcEEec
Q 034444 55 IASLENLRYLNLSNLSSGRLCGSIPSS-LGNLYSFTSFDT 93 (94)
Q Consensus 55 i~~l~~L~~L~ls~N~~~~l~g~iP~~-i~~l~~L~~L~l 93 (94)
+..+++|+.|++++|+ ++ .+|+. +..+++|+.|++
T Consensus 144 ~~~l~~L~~L~L~~N~---l~-~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNN---LT-ELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp TTTCTTCCEEECTTSC---CS-CCCTTTTTTCTTCCEEEC
T ss_pred cccccCCCEEECCCCc---CC-ccCHHHhcCcCCCCEEEC
Confidence 3455555555555555 55 33332 345555555554
No 78
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.56 E-value=6.1e-08 Score=69.51 Aligned_cols=73 Identities=11% Similarity=-0.067 Sum_probs=46.2
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSL 82 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i 82 (94)
..++.|++++ |.+.+..|..|..+++|++ .+..|..++.+++|++|++++|+ +++..|..+
T Consensus 57 ~~L~~L~Ls~--------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---i~~l~~~~~ 125 (606)
T 3t6q_A 57 INLTFLDLTR--------CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG---ISSIDFIPL 125 (606)
T ss_dssp TTCSEEECTT--------CCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC---CSCGGGSCC
T ss_pred ccceEEECCC--------CccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC---cccCCcchh
Confidence 3567777777 7776666666777766666 23345566666777777777666 664334556
Q ss_pred hCCCCCcEEecC
Q 034444 83 GNLYSFTSFDTF 94 (94)
Q Consensus 83 ~~l~~L~~L~ls 94 (94)
+.+++|++|+++
T Consensus 126 ~~l~~L~~L~L~ 137 (606)
T 3t6q_A 126 HNQKTLESLYLG 137 (606)
T ss_dssp TTCTTCCEEECC
T ss_pred ccCCcccEEECC
Confidence 666666666653
No 79
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.56 E-value=9.8e-08 Score=66.83 Aligned_cols=73 Identities=21% Similarity=0.159 Sum_probs=55.1
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCch-hhhcCCCCCeEeccCCCCCcccccChHhh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPI-YIASLENLRYLNLSNLSSGRLCGSIPSSL 82 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~-~i~~l~~L~~L~ls~N~~~~l~g~iP~~i 82 (94)
.+++.|++++ |.+.+..|..+..+++|++ ...+|. .+.++++|++|++++|+ +++..|..+
T Consensus 56 ~~L~~L~L~~--------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~ 124 (477)
T 2id5_A 56 PHLEELELNE--------NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK---IVILLDYMF 124 (477)
T ss_dssp TTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC---CCEECTTTT
T ss_pred CCCCEEECCC--------CccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc---cccCChhHc
Confidence 4578888888 8888777888888888877 345555 36778888888888888 777777777
Q ss_pred hCCCCCcEEecC
Q 034444 83 GNLYSFTSFDTF 94 (94)
Q Consensus 83 ~~l~~L~~L~ls 94 (94)
..+++|+.|+++
T Consensus 125 ~~l~~L~~L~l~ 136 (477)
T 2id5_A 125 QDLYNLKSLEVG 136 (477)
T ss_dssp TTCTTCCEEEEC
T ss_pred cccccCCEEECC
Confidence 777777777763
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.56 E-value=9.5e-08 Score=63.80 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=54.9
Q ss_pred EEEEEeCCCCCCCCcccceeeeCCccc--cCCcCccc--------ccCCc----hhhhcCCCCCeEeccCCCCCcccccC
Q 034444 13 VIELKLGNHFTYIGSVAELHANYRKSK--LVGKHLIH--------GIQIP----IYIASLENLRYLNLSNLSSGRLCGSI 78 (94)
Q Consensus 13 v~~L~l~~~~~~~~~~n~l~g~~p~~l--~~l~~L~~--------~~~iP----~~i~~l~~L~~L~ls~N~~~~l~g~i 78 (94)
++.+++++ |.+.+..|..+ ..+++|+. .+..| ..+..+++|++|++++|+ +++..
T Consensus 93 L~~L~l~~--------n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~---l~~~~ 161 (310)
T 4glp_A 93 LKELTLED--------LKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH---SPAFS 161 (310)
T ss_dssp CCEEEEES--------CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS---SCCCC
T ss_pred eeEEEeeC--------CEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC---cchhh
Confidence 67777777 99998888877 77777777 23333 345678899999999999 88777
Q ss_pred hHhhhCCCCCcEEecC
Q 034444 79 PSSLGNLYSFTSFDTF 94 (94)
Q Consensus 79 P~~i~~l~~L~~L~ls 94 (94)
|..++.+++|++||++
T Consensus 162 ~~~~~~l~~L~~L~Ls 177 (310)
T 4glp_A 162 CEQVRAFPALTSLDLS 177 (310)
T ss_dssp TTSCCCCTTCCEEECC
T ss_pred HHHhccCCCCCEEECC
Confidence 7788888999999875
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.56 E-value=4.9e-08 Score=62.87 Aligned_cols=72 Identities=15% Similarity=0.050 Sum_probs=52.8
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCch-hhhcCCCCCeEeccC-CCCCcccccChH
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPI-YIASLENLRYLNLSN-LSSGRLCGSIPS 80 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~-~i~~l~~L~~L~ls~-N~~~~l~g~iP~ 80 (94)
..++.|++++ |.+++..+..+..+++|+. ...+|+ .+..+++|++|++++ |+ +++..|.
T Consensus 31 ~~l~~L~l~~--------n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~---l~~i~~~ 99 (239)
T 2xwt_C 31 PSTQTLKLIE--------THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN---LTYIDPD 99 (239)
T ss_dssp TTCCEEEEES--------CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT---CCEECTT
T ss_pred CcccEEEEeC--------CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC---eeEcCHH
Confidence 3678889988 8888555557777777777 123554 578888888888887 88 7754445
Q ss_pred hhhCCCCCcEEec
Q 034444 81 SLGNLYSFTSFDT 93 (94)
Q Consensus 81 ~i~~l~~L~~L~l 93 (94)
.+..+++|++|++
T Consensus 100 ~f~~l~~L~~L~l 112 (239)
T 2xwt_C 100 ALKELPLLKFLGI 112 (239)
T ss_dssp SEECCTTCCEEEE
T ss_pred HhCCCCCCCEEeC
Confidence 6778888888876
No 82
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.55 E-value=1.3e-07 Score=63.57 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=30.3
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCC
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLS 70 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~ 70 (94)
.++.|++++ |.+.+..|..+..+++|++ .+..|..++++++|++|++++|+
T Consensus 55 ~l~~L~l~~--------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 55 DTTLLDLQN--------NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp TCCEEECCS--------SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred CCeEEECCC--------CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 456677766 6666544555666666665 22235556666666666666665
No 83
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.55 E-value=6e-08 Score=69.39 Aligned_cols=60 Identities=15% Similarity=0.023 Sum_probs=34.0
Q ss_pred cceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
|.+.+..|..+..+++|++ .+..|..+..+++|++|++++|+ ++ .+|.. .+++|++|+++
T Consensus 62 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~-~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 62 NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR---LQ-NISCC--PMASLRHLDLS 129 (562)
T ss_dssp SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC---CC-EECSC--CCTTCSEEECC
T ss_pred CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc---CC-ccCcc--ccccCCEEECC
Confidence 6665444455566665555 22234456666666666666666 55 55554 56666666653
No 84
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.54 E-value=1.1e-07 Score=64.40 Aligned_cols=72 Identities=15% Similarity=0.078 Sum_probs=57.6
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchh-hhcCCCCCeEeccCCCCCcccccChH--
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIY-IASLENLRYLNLSNLSSGRLCGSIPS-- 80 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~-i~~l~~L~~L~ls~N~~~~l~g~iP~-- 80 (94)
..++.|++++ |.+++..|..+..+++|++ ...+|.. ++.+++|++|++++|+ ++ .+|.
T Consensus 76 ~~L~~L~L~~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~-~l~~~~ 143 (353)
T 2z80_A 76 VNLQALVLTS--------NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP---YK-TLGETS 143 (353)
T ss_dssp TTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC---CS-SSCSSC
T ss_pred CCCCEEECCC--------CccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC---Cc-ccCchh
Confidence 4678889988 9998777777888888887 3456665 8889999999999998 87 5665
Q ss_pred hhhCCCCCcEEecC
Q 034444 81 SLGNLYSFTSFDTF 94 (94)
Q Consensus 81 ~i~~l~~L~~L~ls 94 (94)
.+..+++|++|+++
T Consensus 144 ~~~~l~~L~~L~l~ 157 (353)
T 2z80_A 144 LFSHLTKLQILRVG 157 (353)
T ss_dssp SCTTCTTCCEEEEE
T ss_pred hhccCCCCcEEECC
Confidence 67888888888863
No 85
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.54 E-value=1e-07 Score=71.36 Aligned_cols=63 Identities=21% Similarity=0.109 Sum_probs=47.4
Q ss_pred cceeeeCCccccCCcCccc--------ccCCchh--hhcCCCCCeEeccCCCCCcccccCh-HhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH--------GIQIPIY--IASLENLRYLNLSNLSSGRLCGSIP-SSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~--------~~~iP~~--i~~l~~L~~L~ls~N~~~~l~g~iP-~~i~~l~~L~~L~ls 94 (94)
|.+.+..|..+..+++|++ .+.+|.. ++++++|++|++++|+ +++..| +.++++++|++|+++
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~---l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ---IRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC---CCCCCCCGGGGTCSSCCEEEEE
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc---ccccccchhHhhCCCCCEEECC
Confidence 8888777888888888877 3445654 7888888888888888 776544 568888888888763
No 86
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.54 E-value=6.5e-08 Score=59.83 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=55.1
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccc-cCCcCccc-------ccCCch--hhhcCCCCCeEeccCCCCCcccccChHh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSK-LVGKHLIH-------GIQIPI--YIASLENLRYLNLSNLSSGRLCGSIPSS 81 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l-~~l~~L~~-------~~~iP~--~i~~l~~L~~L~ls~N~~~~l~g~iP~~ 81 (94)
.++.|++++ |.+++ +|+.+ ..+++|++ .+.+|. .+..+++|+.|++++|. ++ .+|..
T Consensus 65 ~L~~L~Ls~--------N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~---i~-~~~~~ 131 (176)
T 1a9n_A 65 RLKTLLVNN--------NRICR-IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP---VT-NKKHY 131 (176)
T ss_dssp SCCEEECCS--------SCCCE-ECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG---GG-GSTTH
T ss_pred CCCEEECCC--------Ccccc-cCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC---CC-CcHhH
Confidence 456666666 88884 55444 77777776 456787 78999999999999999 88 67875
Q ss_pred ----hhCCCCCcEEecC
Q 034444 82 ----LGNLYSFTSFDTF 94 (94)
Q Consensus 82 ----i~~l~~L~~L~ls 94 (94)
++.+++|+.||++
T Consensus 132 ~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 132 RLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp HHHHHHHCTTCSEETTE
T ss_pred HHHHHHHCCccceeCCC
Confidence 8999999999863
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.53 E-value=1e-07 Score=69.23 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=36.8
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChH-h
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPS-S 81 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~-~ 81 (94)
.+++.|++++ |.+++..+..+..+++|++ .+..|..++++++|++|++++|+ ++ .+|+ .
T Consensus 25 ~~l~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~-~l~~~~ 92 (680)
T 1ziw_A 25 TNITVLNLTH--------NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE---LS-QLSDKT 92 (680)
T ss_dssp TTCSEEECCS--------SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC---CC-CCCTTT
T ss_pred CCCcEEECCC--------CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc---cC-ccChhh
Confidence 4578888888 6665443344555555554 22234445555555555555555 44 2332 3
Q ss_pred hhCCCCCcEEec
Q 034444 82 LGNLYSFTSFDT 93 (94)
Q Consensus 82 i~~l~~L~~L~l 93 (94)
++.+++|++|++
T Consensus 93 ~~~l~~L~~L~L 104 (680)
T 1ziw_A 93 FAFCTNLTELHL 104 (680)
T ss_dssp TTTCTTCSEEEC
T ss_pred hccCCCCCEEEC
Confidence 444455554444
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.53 E-value=1.8e-07 Score=61.33 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=6.3
Q ss_pred hcCCCCCeEeccCCC
Q 034444 56 ASLENLRYLNLSNLS 70 (94)
Q Consensus 56 ~~l~~L~~L~ls~N~ 70 (94)
..+++|+.|++++|+
T Consensus 154 ~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQ 168 (270)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCcccceeEecCCc
Confidence 334444444444444
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.53 E-value=6e-08 Score=70.45 Aligned_cols=38 Identities=18% Similarity=0.088 Sum_probs=22.2
Q ss_pred hhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 53 IYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 53 ~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
..++++++|++|++++|. +++..|..++.+++|++|++
T Consensus 115 ~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L 152 (680)
T 1ziw_A 115 NPFVKQKNLITLDLSHNG---LSSTKLGTQVQLENLQELLL 152 (680)
T ss_dssp CTTTTCTTCCEEECCSSC---CSCCCCCSSSCCTTCCEEEC
T ss_pred hHccccCCCCEEECCCCc---ccccCchhhcccccCCEEEc
Confidence 345556666666666666 55555555555666666655
No 90
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.53 E-value=1.2e-07 Score=66.25 Aligned_cols=63 Identities=14% Similarity=-0.015 Sum_probs=44.0
Q ss_pred cceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
|.+.+..|..+..+++|+. .+..|..+..+++|+.|++++|+ +++..+..+..+++|+.|+++
T Consensus 228 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN---LSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CSCCCTTSSTTCTTCCEEECC
T ss_pred CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc---CCccChHHhccccCCCEEEcc
Confidence 7777666777777777766 23345567778888888888888 774444556777788887764
No 91
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.52 E-value=1.2e-07 Score=64.72 Aligned_cols=72 Identities=19% Similarity=0.091 Sum_probs=57.2
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCcccc-CCcCccc-------ccCCc-hhhhcCCCCCeEeccCCCCCcccccChHhh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKL-VGKHLIH-------GIQIP-IYIASLENLRYLNLSNLSSGRLCGSIPSSL 82 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~-~l~~L~~-------~~~iP-~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i 82 (94)
.++.|+|++ |.+++..+..+. .+++|+. ...+| ..+..+++|++|+|++|+ +++..+..+
T Consensus 40 ~l~~L~Ls~--------N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~ 108 (361)
T 2xot_A 40 YTALLDLSH--------NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH---LHTLDEFLF 108 (361)
T ss_dssp TCSEEECCS--------SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CCEECTTTT
T ss_pred CCCEEECCC--------CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc---CCcCCHHHh
Confidence 367788888 999966565565 7778777 33444 569999999999999999 986656678
Q ss_pred hCCCCCcEEecC
Q 034444 83 GNLYSFTSFDTF 94 (94)
Q Consensus 83 ~~l~~L~~L~ls 94 (94)
..+++|++|+|+
T Consensus 109 ~~l~~L~~L~L~ 120 (361)
T 2xot_A 109 SDLQALEVLLLY 120 (361)
T ss_dssp TTCTTCCEEECC
T ss_pred CCCcCCCEEECC
Confidence 999999999985
No 92
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.52 E-value=1.7e-07 Score=64.12 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=44.3
Q ss_pred cceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHh-hhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSS-LGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~-i~~l~~L~~L~ls 94 (94)
|.+.+..+..+..+++|++ .+..|..++.+++|++|++++|+ ++ .+|.. ++.+++|++|+++
T Consensus 79 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~-~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 79 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND---LS-SLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CC-CCCTTTTTTCTTCCEEECC
T ss_pred CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc---cC-cCCHHHhcCCCCCcEEECC
Confidence 7777655567777777776 23334457888888888888888 77 56665 4778888888774
No 93
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.52 E-value=1.3e-07 Score=65.81 Aligned_cols=63 Identities=17% Similarity=0.010 Sum_probs=47.0
Q ss_pred cceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
|.+++..|..+..+++|+. .+..|..+..+++|+.|+|++|+ +++..+..+..+++|+.|+|+
T Consensus 217 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN---LTLLPHDLFTPLHHLERIHLH 287 (440)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC---CCCCCTTTTSSCTTCCEEECC
T ss_pred CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC---CCccChhHhccccCCCEEEcC
Confidence 8888777777777777776 23345567888888888888888 885555566788888888874
No 94
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.52 E-value=1.7e-07 Score=67.71 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=46.9
Q ss_pred ccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCCCCcccccChHh-hhCCCCCcEEecC
Q 034444 28 VAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSS-LGNLYSFTSFDTF 94 (94)
Q Consensus 28 ~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~-i~~l~~L~~L~ls 94 (94)
+|.+.+..|..+..+++|++ .+..|..++.+++|++|++++|. ++ .+|+. ++.+++|++|+++
T Consensus 84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~-~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND---LS-SLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CC-CCCTTTTTTCTTCCEEECC
T ss_pred CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC---CC-CCCHHHhccCCCCCEEEee
Confidence 38888766667888888877 33344457888889999998888 87 45554 5888888888874
No 95
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.49 E-value=4.4e-08 Score=65.58 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=18.1
Q ss_pred hhhhcCCCCCeEeccCCCCCccccc--ChHhh--hCCCCCcEEec
Q 034444 53 IYIASLENLRYLNLSNLSSGRLCGS--IPSSL--GNLYSFTSFDT 93 (94)
Q Consensus 53 ~~i~~l~~L~~L~ls~N~~~~l~g~--iP~~i--~~l~~L~~L~l 93 (94)
..++.+++|++|++++|+ +.|. +|+.+ +.+++|++|++
T Consensus 167 ~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~~~~~l~~L~~L~L 208 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNP---ELGERGLISALCPLKFPTLQVLAL 208 (312)
T ss_dssp TTCCCCSSCCEEECCSCT---TCHHHHHHHHSCTTSCTTCCEEEC
T ss_pred HHhccCCCCCEEECCCCC---cCcchHHHHHHHhccCCCCCEEEC
Confidence 445555555555555555 4443 23333 44455555544
No 96
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.48 E-value=3e-07 Score=60.27 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=20.5
Q ss_pred hhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 54 YIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 54 ~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
.+..+++|++|++++|+ +++..+..++.+++|+.|++
T Consensus 128 ~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 128 VFDSLTKLTYLSLGYNE---LQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp TTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEEC
T ss_pred HhCcCcCCCEEECCCCc---CCccCHhHccCCcccceeEe
Confidence 35566666666666666 55322233555666666655
No 97
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.47 E-value=3e-07 Score=61.24 Aligned_cols=70 Identities=17% Similarity=0.076 Sum_probs=36.4
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCc-hhhhcCCCCCeEeccCCCCCcccccChHhhh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIP-IYIASLENLRYLNLSNLSSGRLCGSIPSSLG 83 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP-~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~ 83 (94)
.++.|++++ |.+. .+|..+..+++|+. ...+| ..+..+++|++|++++|+ +++..+..+.
T Consensus 78 ~L~~L~Ls~--------N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~ 145 (290)
T 1p9a_G 78 VLGTLDLSH--------NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE---LKTLPPGLLT 145 (290)
T ss_dssp TCCEEECCS--------SCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC---CCCCCTTTTT
T ss_pred cCCEEECCC--------CcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC---CCccChhhcc
Confidence 455566666 5555 45555555555554 22333 345555666666666665 5533333345
Q ss_pred CCCCCcEEec
Q 034444 84 NLYSFTSFDT 93 (94)
Q Consensus 84 ~l~~L~~L~l 93 (94)
.+++|+.|++
T Consensus 146 ~l~~L~~L~L 155 (290)
T 1p9a_G 146 PTPKLEKLSL 155 (290)
T ss_dssp TCTTCCEEEC
T ss_pred cccCCCEEEC
Confidence 5555555554
No 98
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.39 E-value=6.1e-07 Score=60.12 Aligned_cols=52 Identities=23% Similarity=0.059 Sum_probs=30.0
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCCC
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNLS 70 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N~ 70 (94)
..++.|++++ |.+++..+..+..+++|++ .+..|..++.+++|++|++++|+
T Consensus 52 ~~l~~L~L~~--------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 52 PDTALLDLQN--------NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp TTCCEEECCS--------SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred CCCeEEECCC--------CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 3567788887 6666443445555665555 22235556666666666666555
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.38 E-value=4.2e-07 Score=64.53 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=17.5
Q ss_pred chhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 52 PIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 52 P~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
|+.+..+++|+.|++++|. ++ .+|..++.+++|+.|++
T Consensus 207 ~~~~~~l~~L~~L~Ls~N~---l~-~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 207 GPEFQSAAGVTWISLRNNK---LV-LIEKALRFSQNLEHFDL 244 (487)
T ss_dssp CGGGGGGTTCSEEECTTSC---CC-EECTTCCCCTTCCEEEC
T ss_pred CHhHcCCCCccEEEecCCc---Cc-ccchhhccCCCCCEEEc
Confidence 3334444444444444444 44 24444444444444444
No 100
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.34 E-value=5.3e-07 Score=60.41 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=29.8
Q ss_pred cCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 49 IQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 49 ~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
..+|+.+..+++|+.|++++|+ ++ .+|..+..+++|+.|+++
T Consensus 204 ~~l~~~~~~l~~L~~L~L~~N~---l~-~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 204 AFMGPEFQSAAGVTWISLRNNK---LV-LIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp CEECGGGGGGTTCSEEECTTSC---CC-EECTTCCCCTTCCEEECT
T ss_pred CcchhhhcccCcccEEECcCCc---cc-chhhHhhcCCCCCEEEcc
Confidence 3456667777777777777777 76 567777777777777764
No 101
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.32 E-value=3e-07 Score=65.29 Aligned_cols=70 Identities=13% Similarity=-0.003 Sum_probs=37.3
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhh-cCCCCCeEeccCCCCCcccccChHhh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIA-SLENLRYLNLSNLSSGRLCGSIPSSL 82 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~-~l~~L~~L~ls~N~~~~l~g~iP~~i 82 (94)
.++.|++++ |.+++..|..++.+++|+. .+.+|..+. .+++|+.|++++|. +++. |. .
T Consensus 121 ~L~~L~L~~--------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~---l~~~-~~-~ 187 (487)
T 3oja_A 121 GKKNIYLAN--------NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF---IYDV-KG-Q 187 (487)
T ss_dssp SCEEEECCS--------SCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC---CCEE-EC-C
T ss_pred CCCEEECCC--------CCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc---cccc-cc-c
Confidence 345555555 6666555555555555554 233444443 56666666666666 5533 22 2
Q ss_pred hCCCCCcEEecC
Q 034444 83 GNLYSFTSFDTF 94 (94)
Q Consensus 83 ~~l~~L~~L~ls 94 (94)
..+++|+.|+|+
T Consensus 188 ~~l~~L~~L~Ls 199 (487)
T 3oja_A 188 VVFAKLKTLDLS 199 (487)
T ss_dssp CCCTTCCEEECC
T ss_pred ccCCCCCEEECC
Confidence 345666666653
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.32 E-value=1.3e-07 Score=63.23 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=16.9
Q ss_pred chhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 52 PIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 52 P~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
|..+..+++|++|++++|. +++..|..++.+++|++|++
T Consensus 111 ~~~~~~~~~L~~L~L~~~~---l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLR---LSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp HHHHTTBCCCSEEECTTCB---CCHHHHHHHTTCTTCSEEEC
T ss_pred HHHHhhCCCCCEEeCcCcc---cCHHHHHHHhcCCCCCEEEC
Confidence 3334444444444444444 44444444444444444443
No 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.31 E-value=4e-07 Score=60.84 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=57.5
Q ss_pred CcEEEEEeCCCCCCCCcccceeee-CCccccCCcCccc--------ccCCchhhhcCCCCCeEeccCC-CCCcccc-cCh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHAN-YRKSKLVGKHLIH--------GIQIPIYIASLENLRYLNLSNL-SSGRLCG-SIP 79 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~-~p~~l~~l~~L~~--------~~~iP~~i~~l~~L~~L~ls~N-~~~~l~g-~iP 79 (94)
.+++.+++++ |.+.+. +|..+..+++|+. .+..|..++++++|++|++++| . +++ .+|
T Consensus 93 ~~L~~L~L~~--------~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~---l~~~~l~ 161 (336)
T 2ast_B 93 FRVQHMDLSN--------SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG---FSEFALQ 161 (336)
T ss_dssp BCCCEEECTT--------CEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBS---CCHHHHH
T ss_pred CCCCEEEccC--------CCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCC---CCHHHHH
Confidence 3466667776 888765 7777777777777 3356778899999999999999 7 776 378
Q ss_pred HhhhCCCCCcEEecC
Q 034444 80 SSLGNLYSFTSFDTF 94 (94)
Q Consensus 80 ~~i~~l~~L~~L~ls 94 (94)
..+..+++|++|+++
T Consensus 162 ~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 162 TLLSSCSRLDELNLS 176 (336)
T ss_dssp HHHHHCTTCCEEECC
T ss_pred HHHhcCCCCCEEcCC
Confidence 888999999999985
No 104
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.28 E-value=1.3e-08 Score=64.17 Aligned_cols=67 Identities=15% Similarity=0.067 Sum_probs=39.1
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhC
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGN 84 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~ 84 (94)
.++.|++++ |.+.+ +| .+..+++|++ ...+|..+..+++|++|++++|+ +++ +| .++.
T Consensus 49 ~L~~L~ls~--------n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~---l~~-l~-~~~~ 113 (198)
T 1ds9_A 49 ACKHLALST--------NNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ---IAS-LS-GIEK 113 (198)
T ss_dssp TCSEEECSE--------EEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE---CCC-HH-HHHH
T ss_pred CCCEEECCC--------CCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc---CCc-CC-cccc
Confidence 345555555 66653 55 5555555555 33566656666666666666666 653 44 4566
Q ss_pred CCCCcEEec
Q 034444 85 LYSFTSFDT 93 (94)
Q Consensus 85 l~~L~~L~l 93 (94)
+++|++|++
T Consensus 114 l~~L~~L~l 122 (198)
T 1ds9_A 114 LVNLRVLYM 122 (198)
T ss_dssp HHHSSEEEE
T ss_pred CCCCCEEEC
Confidence 666666665
No 105
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.26 E-value=3.1e-08 Score=62.40 Aligned_cols=36 Identities=28% Similarity=0.253 Sum_probs=16.8
Q ss_pred hhhcCCCCCeEeccCCCCCcccccCh--HhhhCCCCCcEEec
Q 034444 54 YIASLENLRYLNLSNLSSGRLCGSIP--SSLGNLYSFTSFDT 93 (94)
Q Consensus 54 ~i~~l~~L~~L~ls~N~~~~l~g~iP--~~i~~l~~L~~L~l 93 (94)
.+..+++|++|++++|+ ++ .+| +.+..+++|++|++
T Consensus 110 ~~~~l~~L~~L~l~~N~---i~-~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNK---IT-NWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp HHHHHHHSSEEEESEEE---CC-CHHHHHHHTTTTTCSEEEE
T ss_pred ccccCCCCCEEECCCCc---CC-chhHHHHHhcCCCCCEEEe
Confidence 34445555555555555 44 222 24445555555544
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.25 E-value=6.3e-07 Score=59.80 Aligned_cols=68 Identities=24% Similarity=0.181 Sum_probs=48.6
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCC---cCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHh
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVG---KHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSS 81 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l---~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~ 81 (94)
.++.|++++ |.+.+..|+.+..+ ++|+. ...+|..+. ++|+.|++++|+ +++ +|.
T Consensus 225 ~L~~L~Ls~--------N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~---l~~-~~~- 289 (310)
T 4glp_A 225 QPHSLDLSH--------NSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR---LNR-APQ- 289 (310)
T ss_dssp CCSSEECTT--------SCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC---CCS-CCC-
T ss_pred CCCEEECCC--------CCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc---CCC-Cch-
Confidence 456666666 88887778777666 46665 346777664 788899999998 884 444
Q ss_pred hhCCCCCcEEecC
Q 034444 82 LGNLYSFTSFDTF 94 (94)
Q Consensus 82 i~~l~~L~~L~ls 94 (94)
+..+++|+.|+++
T Consensus 290 ~~~l~~L~~L~L~ 302 (310)
T 4glp_A 290 PDELPEVDNLTLD 302 (310)
T ss_dssp TTSCCCCSCEECS
T ss_pred hhhCCCccEEECc
Confidence 5677888888874
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.24 E-value=6.3e-07 Score=61.32 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=52.6
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeC----CccccCCcCccc-----------ccCCchhh-------hcCCCCCeEeccC
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANY----RKSKLVGKHLIH-----------GIQIPIYI-------ASLENLRYLNLSN 68 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~----p~~l~~l~~L~~-----------~~~iP~~i-------~~l~~L~~L~ls~ 68 (94)
..++.|++++ |.+.+.. +..+..+++|+. .+.+|..+ ..+++|++|++++
T Consensus 32 ~~L~~L~L~~--------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 32 DSVKEIVLSG--------NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp SCCCEEECTT--------SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred CCccEEECCC--------CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 4578888988 8887653 333556666665 23456555 6788888888888
Q ss_pred CCCCcccc----cChHhhhCCCCCcEEecC
Q 034444 69 LSSGRLCG----SIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 69 N~~~~l~g----~iP~~i~~l~~L~~L~ls 94 (94)
|. +.+ .+|..+..+++|++|+|+
T Consensus 104 n~---l~~~~~~~l~~~l~~~~~L~~L~L~ 130 (386)
T 2ca6_A 104 NA---FGPTAQEPLIDFLSKHTPLEHLYLH 130 (386)
T ss_dssp CC---CCTTTHHHHHHHHHHCTTCCEEECC
T ss_pred Cc---CCHHHHHHHHHHHHhCCCCCEEECc
Confidence 88 876 477788888888888874
No 108
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.23 E-value=3.1e-06 Score=56.63 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=15.4
Q ss_pred hhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 55 IASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 55 i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
+..+++|+.|++++|+ +++ +|. +..+++|++|++
T Consensus 103 ~~~l~~L~~L~l~~n~---l~~-~~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQ---ITD-VTP-LAGLSNLQVLYL 136 (308)
T ss_dssp GTTCTTCCEEECTTSC---CCC-CGG-GTTCTTCCEEEC
T ss_pred hcCCCCCCEEECCCCC---CCC-chh-hcCCCCCCEEEC
Confidence 4444555555555554 442 332 444444444443
No 109
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.21 E-value=1.7e-06 Score=58.08 Aligned_cols=37 Identities=32% Similarity=0.275 Sum_probs=18.0
Q ss_pred chhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 52 PIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 52 P~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
|..++.+++|++|++++|. +++..| ++.+++|+.|++
T Consensus 304 ~~~l~~l~~L~~L~L~~n~---l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 304 MEVIGGLTNLTTLFLSQNH---ITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp HHHHHTCTTCSEEECCSSS---CCCCGG--GGGCTTCSEESS
T ss_pred hhHhhccccCCEEEccCCc---cccccC--hhhhhccceeeh
Confidence 3344555555555555555 543222 445555555544
No 110
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.21 E-value=2.2e-06 Score=60.04 Aligned_cols=66 Identities=23% Similarity=0.267 Sum_probs=44.3
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhC
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGN 84 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~ 84 (94)
+++.|++++ |.+.+ +|+ +..+++|++ ...+|+ ++++++|++|++++|+ +++ +|. +..
T Consensus 69 ~L~~L~Ls~--------n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~---l~~-~~~-~~~ 132 (466)
T 1o6v_A 69 NLTQINFSN--------NQLTD-ITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ---ITD-IDP-LKN 132 (466)
T ss_dssp TCCEEECCS--------SCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC---CCC-CGG-GTT
T ss_pred CCCEEECCC--------CccCC-chh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC---CCC-ChH-HcC
Confidence 456666666 77773 444 677777776 233444 7778888888888887 763 444 777
Q ss_pred CCCCcEEec
Q 034444 85 LYSFTSFDT 93 (94)
Q Consensus 85 l~~L~~L~l 93 (94)
+++|++|++
T Consensus 133 l~~L~~L~l 141 (466)
T 1o6v_A 133 LTNLNRLEL 141 (466)
T ss_dssp CTTCSEEEE
T ss_pred CCCCCEEEC
Confidence 777777775
No 111
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.21 E-value=3.8e-06 Score=56.15 Aligned_cols=34 Identities=32% Similarity=0.612 Sum_probs=15.1
Q ss_pred hhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 55 IASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 55 i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
++.+++|++|++++|+ +++ +|. +..+++|+.|++
T Consensus 147 l~~l~~L~~L~l~~n~---l~~-~~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNAQ---VSD-LTP-LANLSKLTTLKA 180 (308)
T ss_dssp GGGCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEEC
T ss_pred ccCCCCccEEEccCCc---CCC-Chh-hcCCCCCCEEEC
Confidence 4444444444444444 442 232 444444444443
No 112
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.17 E-value=4.1e-07 Score=64.12 Aligned_cols=51 Identities=16% Similarity=0.022 Sum_probs=21.0
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCchhhhcCCCC-------------CeEeccCC
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPIYIASLENL-------------RYLNLSNL 69 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~~i~~l~~L-------------~~L~ls~N 69 (94)
.+++++++++ |.+ |.+|++++++++|++ .|.+|..++++++| ++|++++|
T Consensus 11 ~~L~~L~l~~--------n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 11 TFLQEPLRHS--------SNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred ccchhhhccc--------Cch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 5688899999 999 799999999999998 67899888877653 66666666
Q ss_pred C
Q 034444 70 S 70 (94)
Q Consensus 70 ~ 70 (94)
+
T Consensus 82 ~ 82 (454)
T 1jl5_A 82 G 82 (454)
T ss_dssp C
T ss_pred c
Confidence 6
No 113
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.17 E-value=1.9e-06 Score=57.71 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=37.7
Q ss_pred cceeeeCCcccc-CCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKL-VGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~-~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
|.+.+..+..+. .+++|+. ...+| ....+++|++|++++|+ ++ .+|+.+..+++|+.|+++
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~l~~L~~L~Ls~N~---l~-~l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNK---LA-FMGPEFQSAAGVTWISLR 222 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEECCSSC---CC-EECGGGGGGTTCSEEECT
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCcccc-cccccccCCEEECCCCc---CC-cchhhhcccCcccEEECc
Confidence 666654444442 4455554 12222 22347788888888888 77 466668888888888874
No 114
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.16 E-value=5.5e-06 Score=55.57 Aligned_cols=60 Identities=18% Similarity=0.092 Sum_probs=44.5
Q ss_pred cceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
|.+.+ + +.+..+++|+. ...+ +.+..+++|+.|++++|+ +++..|..++.+++|++|+++
T Consensus 253 n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 253 NQISD-I-NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQ---LGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp SCCCC-C-GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC---CCGGGHHHHHTCTTCSEEECC
T ss_pred CccCC-C-hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCc---CCCcChhHhhccccCCEEEcc
Confidence 66663 3 34666666665 2234 357888999999999999 888888889999999999874
No 115
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.16 E-value=4.5e-06 Score=55.46 Aligned_cols=66 Identities=21% Similarity=0.205 Sum_probs=30.2
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhC
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGN 84 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~ 84 (94)
+++.|++++ |.+++ +++ +..+++|++ ...+| .+..+++|++|++++|+ +++ + +.+..
T Consensus 69 ~L~~L~L~~--------n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~---i~~-~-~~l~~ 132 (291)
T 1h6t_A 69 NVTKLFLNG--------NKLTD-IKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNG---ISD-I-NGLVH 132 (291)
T ss_dssp TCCEEECCS--------SCCCC-CGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSC---CCC-C-GGGGG
T ss_pred CCCEEEccC--------CccCC-Ccc-cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEECCCCc---CCC-C-hhhcC
Confidence 355556655 55553 333 455555544 11222 24455555555555555 442 2 23444
Q ss_pred CCCCcEEec
Q 034444 85 LYSFTSFDT 93 (94)
Q Consensus 85 l~~L~~L~l 93 (94)
+++|+.|++
T Consensus 133 l~~L~~L~l 141 (291)
T 1h6t_A 133 LPQLESLYL 141 (291)
T ss_dssp CTTCCEEEC
T ss_pred CCCCCEEEc
Confidence 444444443
No 116
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.13 E-value=6e-06 Score=54.86 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=7.9
Q ss_pred hhhcCCCCCeEeccCCC
Q 034444 54 YIASLENLRYLNLSNLS 70 (94)
Q Consensus 54 ~i~~l~~L~~L~ls~N~ 70 (94)
.++.+++|+.|++++|+
T Consensus 151 ~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp GGGGCTTCSEEECCSSC
T ss_pred hhccCCCCCEEEccCCc
Confidence 34444444444444444
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.13 E-value=7.1e-07 Score=64.94 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=23.3
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCC
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLS 70 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~ 70 (94)
+++.|++++ |.+++ +|..+. ++|+. ...+| ..+++|++|++++|+
T Consensus 60 ~L~~L~Ls~--------n~L~~-lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~ 111 (571)
T 3cvr_A 60 QFSELQLNR--------LNLSS-LPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR 111 (571)
T ss_dssp TCSEEECCS--------SCCSC-CCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC
T ss_pred CccEEEeCC--------CCCCc-cCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC
Confidence 567777777 66654 555432 33333 22444 334555555555555
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.10 E-value=4.7e-06 Score=58.73 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=34.7
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLG 83 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~ 83 (94)
.+++.|++++ |.+++ +| .+..+++|++ ...+| ++.+++|++|++++|+ +++ +| ++
T Consensus 42 ~~L~~L~Ls~--------n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~---l~~-~~--~~ 103 (457)
T 3bz5_A 42 ATLTSLDCHN--------SSITD-MT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK---LTN-LD--VT 103 (457)
T ss_dssp TTCCEEECCS--------SCCCC-CT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC---CSC-CC--CT
T ss_pred CCCCEEEccC--------CCccc-Ch-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC---Cce-ee--cC
Confidence 3466777777 66664 33 4555555555 22233 5555555555555555 553 33 45
Q ss_pred CCCCCcEEec
Q 034444 84 NLYSFTSFDT 93 (94)
Q Consensus 84 ~l~~L~~L~l 93 (94)
.+++|++|++
T Consensus 104 ~l~~L~~L~L 113 (457)
T 3bz5_A 104 PLTKLTYLNC 113 (457)
T ss_dssp TCTTCCEEEC
T ss_pred CCCcCCEEEC
Confidence 5555555554
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.08 E-value=5.3e-06 Score=54.43 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=18.2
Q ss_pred hhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 54 YIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 54 ~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
.+..+++|+.|++++|+ +++. ..+..+++|+.|++
T Consensus 145 ~l~~l~~L~~L~L~~N~---i~~~--~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNE---ITNT--GGLTRLKKVNWIDL 179 (263)
T ss_dssp GGGGCTTCCEEECTTSC---CCBC--TTSTTCCCCCEEEE
T ss_pred HHccCCCCCEEECCCCc---Ccch--HHhccCCCCCEEeC
Confidence 45555555555555555 5532 34455555555554
No 120
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.07 E-value=7.8e-06 Score=59.77 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=7.1
Q ss_pred hhcCCCCCeEeccCCC
Q 034444 55 IASLENLRYLNLSNLS 70 (94)
Q Consensus 55 i~~l~~L~~L~ls~N~ 70 (94)
++.+++|+.|+|++|+
T Consensus 149 l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 149 LSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp GGSCTTCSEEECCSSC
T ss_pred hcccCCCCEEECcCCc
Confidence 4444444444444444
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.05 E-value=6e-06 Score=54.16 Aligned_cols=57 Identities=18% Similarity=-0.021 Sum_probs=33.4
Q ss_pred cceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
|.+++ +++ +..+++|+. ...+|... . ++|+.|++++|+ +++ +| .++.+++|+.|+++
T Consensus 73 N~i~~-~~~-l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L~L~~N~---l~~-~~-~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 73 NQISD-LSP-LKDLTKLEELSVNRNRLKNLNGIP-S-ACLSRLFLDNNE---LRD-TD-SLIHLKNLEILSIR 136 (263)
T ss_dssp SCCCC-CGG-GTTCSSCCEEECCSSCCSCCTTCC-C-SSCCEEECCSSC---CSB-SG-GGTTCTTCCEEECT
T ss_pred CccCC-Chh-hccCCCCCEEECCCCccCCcCccc-c-CcccEEEccCCc---cCC-Ch-hhcCcccccEEECC
Confidence 66653 333 555655555 22333322 2 666777777776 663 44 57788888888874
No 122
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.02 E-value=7.8e-06 Score=52.42 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=5.0
Q ss_pred CCCCeEeccCC
Q 034444 59 ENLRYLNLSNL 69 (94)
Q Consensus 59 ~~L~~L~ls~N 69 (94)
++|+.|++++|
T Consensus 179 ~~L~~L~L~~n 189 (239)
T 2xwt_C 179 TKLDAVYLNKN 189 (239)
T ss_dssp CEEEEEECTTC
T ss_pred CCCCEEEcCCC
Confidence 44444444444
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.01 E-value=1.2e-06 Score=59.94 Aligned_cols=71 Identities=8% Similarity=0.027 Sum_probs=38.4
Q ss_pred cEEEEEeCCCCCCCCccccee----eeCCccccCCcCccc--------c----cCCchhhh--cCCCCCeEeccCCCCCc
Q 034444 12 RVIELKLGNHFTYIGSVAELH----ANYRKSKLVGKHLIH--------G----IQIPIYIA--SLENLRYLNLSNLSSGR 73 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~----g~~p~~l~~l~~L~~--------~----~~iP~~i~--~l~~L~~L~ls~N~~~~ 73 (94)
.++.|++++ |.++ +.+|..+..+++|+. . ..+|..+. .+++|+.|++++|.
T Consensus 217 ~L~~L~Ls~--------n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~--- 285 (386)
T 2ca6_A 217 ELKVLDLQD--------NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE--- 285 (386)
T ss_dssp TCCEEECCS--------SCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC---
T ss_pred CccEEECcC--------CCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc---
Confidence 355555555 6554 345555555555554 0 11344442 26666666666666
Q ss_pred ccc----cChHhh-hCCCCCcEEec
Q 034444 74 LCG----SIPSSL-GNLYSFTSFDT 93 (94)
Q Consensus 74 l~g----~iP~~i-~~l~~L~~L~l 93 (94)
+++ .+|..+ .++++|++|++
T Consensus 286 i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 286 IELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp CBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred CCHHHHHHHHHHHHhcCCCceEEEc
Confidence 665 366655 44666666665
No 124
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.99 E-value=1.1e-05 Score=56.60 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=35.0
Q ss_pred cceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
|.+.+..| +..+++|+. ...+ +.+.++++|+.|++++|+ +++..| +..+++|+.|+++
T Consensus 319 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~---l~~~~~--~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 319 NNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQ---ISDLTP--LANLTRITQLGLN 383 (466)
T ss_dssp SCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSC---CCBCGG--GTTCTTCCEEECC
T ss_pred CcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCc---cCccch--hhcCCCCCEEecc
Confidence 65554333 445555554 1222 356677777777777777 776555 6777777777663
No 125
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.98 E-value=2.7e-06 Score=59.90 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=37.3
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc----ccCCchhhhcCCCCCeEeccCCCCCcccc--cChHhhhCC
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH----GIQIPIYIASLENLRYLNLSNLSSGRLCG--SIPSSLGNL 85 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~----~~~iP~~i~~l~~L~~L~ls~N~~~~l~g--~iP~~i~~l 85 (94)
.++.+++++ |.+++ +|..+..++.|.- ...+|. .+++|++|++++|+ +++ .+|.+++.+
T Consensus 318 ~L~~L~Ls~--------N~l~~-lp~~~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~---l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 318 SLEELNVSN--------NKLIE-LPALPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNP---LREFPDIPESVEDL 382 (454)
T ss_dssp TCCEEECCS--------SCCSC-CCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC---CSSCCCCCTTCCEE
T ss_pred cCCEEECCC--------Ccccc-ccccCCcCCEEECCCCccccccc---hhhhccEEECCCCC---CCcCCCChHHHHhh
Confidence 455555555 77764 6655444443332 335665 46788888888888 777 677777666
Q ss_pred -------------CCCcEEecC
Q 034444 86 -------------YSFTSFDTF 94 (94)
Q Consensus 86 -------------~~L~~L~ls 94 (94)
++|+.||++
T Consensus 383 ~~n~~~~~i~~~~~~L~~L~ls 404 (454)
T 1jl5_A 383 RMNSHLAEVPELPQNLKQLHVE 404 (454)
T ss_dssp ECCC------------------
T ss_pred hhcccccccccccCcCCEEECC
Confidence 667777763
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.97 E-value=1.1e-05 Score=59.25 Aligned_cols=58 Identities=22% Similarity=0.140 Sum_probs=39.2
Q ss_pred cceeeeCCccccCCcCccc----ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH----GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~----~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
|.+++ +|..+.+|+.|.- ...+|. .+++|+.|++++|+ ++ .+|..+..+++|+.|+|+
T Consensus 231 N~L~~-lp~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~---L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 231 NRLTS-LPVLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ---LT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp SCCSC-CCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC---CC-SCCGGGGGSCTTCEEECC
T ss_pred CccCc-CCCCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCC---CC-cCCHHHhhccccCEEEec
Confidence 66663 5543333333332 335665 56788888888888 87 788888888888888874
No 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.95 E-value=1.2e-05 Score=56.68 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=35.0
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLG 83 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~ 83 (94)
..++.|++++ |.+++ +| ++.+++|++ ...+| ++++++|++|++++|+ +++ +| ++
T Consensus 64 ~~L~~L~Ls~--------n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~---l~~-l~--~~ 124 (457)
T 3bz5_A 64 TGLTKLICTS--------NNITT-LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK---LTK-LD--VS 124 (457)
T ss_dssp TTCSEEECCS--------SCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC---CSC-CC--CT
T ss_pred CCCCEEEccC--------CcCCe-Ec--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc---CCe-ec--CC
Confidence 3466677777 66664 33 555555555 12233 5556666666666666 553 43 55
Q ss_pred CCCCCcEEec
Q 034444 84 NLYSFTSFDT 93 (94)
Q Consensus 84 ~l~~L~~L~l 93 (94)
.+++|++|++
T Consensus 125 ~l~~L~~L~l 134 (457)
T 3bz5_A 125 QNPLLTYLNC 134 (457)
T ss_dssp TCTTCCEEEC
T ss_pred CCCcCCEEEC
Confidence 5555555554
No 128
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.93 E-value=7.1e-06 Score=54.70 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=52.3
Q ss_pred CcEEEEEeCCCCCCCCcccceee--eCCccccCCcCccc-------ccCCchhhhcCC--CCCeEeccCCCCCcccccCh
Q 034444 11 GRVIELKLGNHFTYIGSVAELHA--NYRKSKLVGKHLIH-------GIQIPIYIASLE--NLRYLNLSNLSSGRLCGSIP 79 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g--~~p~~l~~l~~L~~-------~~~iP~~i~~l~--~L~~L~ls~N~~~~l~g~iP 79 (94)
..++.|+|++ |.+++ .+|..+..+++|+. ...+ ..+..+. +|+.|+|++|. +++.+|
T Consensus 170 ~~L~~L~Ls~--------N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np---l~~~~~ 237 (267)
T 3rw6_A 170 PELLSLNLSN--------NRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS---LCDTFR 237 (267)
T ss_dssp TTCCEEECTT--------SCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST---TGGGCS
T ss_pred CCCCEEECCC--------CCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc---CccccC
Confidence 4688999999 99997 56666667777776 1222 2455555 99999999999 998777
Q ss_pred H-------hhhCCCCCcEEe
Q 034444 80 S-------SLGNLYSFTSFD 92 (94)
Q Consensus 80 ~-------~i~~l~~L~~L~ 92 (94)
. .+..+++|+.||
T Consensus 238 ~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEES
T ss_pred cchhHHHHHHHHCcccCeEC
Confidence 2 367889999887
No 129
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.93 E-value=1.8e-05 Score=57.81 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=45.0
Q ss_pred cceeeeCCccccCCcCccc-------ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 29 AELHANYRKSKLVGKHLIH-------GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~-------~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
|.+++. +.+..+++|+. ...+++ +..+++|+.|+|++|+ +++ +| .+..+++|+.|+|+
T Consensus 141 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~---i~~-l~-~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 141 NKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH---ISD-LR-ALAGLKNLDVLELF 205 (605)
T ss_dssp SCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC---CCB-CG-GGTTCTTCSEEECC
T ss_pred CccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC---CCC-Ch-HHccCCCCCEEEcc
Confidence 777743 55677777776 233444 8999999999999999 885 55 58999999999985
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.93 E-value=8.8e-06 Score=59.24 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=18.9
Q ss_pred CeEeccCCCCCcccccChHhhhCCCCCcEEecC
Q 034444 62 RYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 62 ~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ls 94 (94)
+.|++++|+ ++ .+|..+..+++|+.|+|+
T Consensus 210 ~~L~Ls~N~---l~-~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 210 IFFRCRENR---IT-HIPENILSLDPTCTIILE 238 (571)
T ss_dssp EEEECCSSC---CC-CCCGGGGGSCTTEEEECC
T ss_pred eEEecCCCc---ce-ecCHHHhcCCCCCEEEee
Confidence 666666666 65 566666666666666653
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.88 E-value=1.2e-05 Score=54.55 Aligned_cols=70 Identities=19% Similarity=0.031 Sum_probs=46.1
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCc-cccCCcCccc--------ccCCch-hhhcCCCCCe-EeccCCCCCcccccChH
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRK-SKLVGKHLIH--------GIQIPI-YIASLENLRY-LNLSNLSSGRLCGSIPS 80 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~-~l~~l~~L~~--------~~~iP~-~i~~l~~L~~-L~ls~N~~~~l~g~iP~ 80 (94)
.++.|+|++ |+++ .+|+ .|..+++|++ .+.+|. .+.++++++. +.++.|+ ++...|.
T Consensus 31 ~l~~L~Ls~--------N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~---l~~l~~~ 98 (350)
T 4ay9_X 31 NAIELRFVL--------TKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN---LLYINPE 98 (350)
T ss_dssp TCSEEEEES--------CCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT---CCEECTT
T ss_pred CCCEEEccC--------CcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc---ccccCch
Confidence 578888888 8887 4554 5677777776 234554 3566776664 4555677 6644456
Q ss_pred hhhCCCCCcEEec
Q 034444 81 SLGNLYSFTSFDT 93 (94)
Q Consensus 81 ~i~~l~~L~~L~l 93 (94)
.+..+++|++|++
T Consensus 99 ~f~~l~~L~~L~l 111 (350)
T 4ay9_X 99 AFQNLPNLQYLLI 111 (350)
T ss_dssp SBCCCTTCCEEEE
T ss_pred hhhhccccccccc
Confidence 6677777777765
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.88 E-value=5.9e-06 Score=56.19 Aligned_cols=19 Identities=32% Similarity=0.202 Sum_probs=9.8
Q ss_pred CCCCeEeccCCCCCcccccChH
Q 034444 59 ENLRYLNLSNLSSGRLCGSIPS 80 (94)
Q Consensus 59 ~~L~~L~ls~N~~~~l~g~iP~ 80 (94)
++|++|++++|+ +++..+.
T Consensus 80 ~~L~~L~Ls~n~---l~~~~~~ 98 (362)
T 3goz_A 80 ANVTSLNLSGNF---LSYKSSD 98 (362)
T ss_dssp TTCCEEECCSSC---GGGSCHH
T ss_pred CCccEEECcCCc---CChHHHH
Confidence 555555555555 5544443
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.70 E-value=2.8e-05 Score=52.87 Aligned_cols=63 Identities=17% Similarity=0.031 Sum_probs=47.1
Q ss_pred cceeeeCCccccCCcCccc-------ccCCc-----hhhhcCC-CCCeEeccCCCCCcccccChHhhhCC-----CCCcE
Q 034444 29 AELHANYRKSKLVGKHLIH-------GIQIP-----IYIASLE-NLRYLNLSNLSSGRLCGSIPSSLGNL-----YSFTS 90 (94)
Q Consensus 29 n~l~g~~p~~l~~l~~L~~-------~~~iP-----~~i~~l~-~L~~L~ls~N~~~~l~g~iP~~i~~l-----~~L~~ 90 (94)
|.++|.+|..+...++|+. .+.++ ..+..++ +|++|++++|+ +++..+..++.+ ++|++
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~---l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS---LGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC---GGGSCHHHHHHHHHTSCTTCCE
T ss_pred ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC---CCHHHHHHHHHHHhccCCCccE
Confidence 7777776665555555555 22333 5677888 99999999999 998878887775 89999
Q ss_pred EecC
Q 034444 91 FDTF 94 (94)
Q Consensus 91 L~ls 94 (94)
|+++
T Consensus 85 L~Ls 88 (362)
T 3goz_A 85 LNLS 88 (362)
T ss_dssp EECC
T ss_pred EECc
Confidence 9985
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.62 E-value=5.7e-05 Score=51.13 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=42.4
Q ss_pred EEEEEeCCCCCCCCcccceeeeCCccccCCcCccc--------ccCCch-hhhcCCCCCeEeccCCCCCcccccChHh
Q 034444 13 VIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH--------GIQIPI-YIASLENLRYLNLSNLSSGRLCGSIPSS 81 (94)
Q Consensus 13 v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~--------~~~iP~-~i~~l~~L~~L~ls~N~~~~l~g~iP~~ 81 (94)
++.+++++ |+++ .+|+......+|+. .+.||+ .+..+++|+.||+++|+ ++ .+|..
T Consensus 156 l~~L~L~~--------N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~---l~-~lp~~ 220 (350)
T 4ay9_X 156 SVILWLNK--------NGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR---IH-SLPSY 220 (350)
T ss_dssp CEEEECCS--------SCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC---CC-CCCSS
T ss_pred hhhhcccc--------cccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC---cC-ccChh
Confidence 55666666 9998 67776666656655 567886 47899999999999999 88 67753
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.61 E-value=1e-05 Score=56.02 Aligned_cols=34 Identities=24% Similarity=0.185 Sum_probs=24.4
Q ss_pred CCCCCeEeccCCCCCcccc----cChHhhhCCCCCcEEecC
Q 034444 58 LENLRYLNLSNLSSGRLCG----SIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 58 l~~L~~L~ls~N~~~~l~g----~iP~~i~~l~~L~~L~ls 94 (94)
.++|++|++++|+ +++ .+|..+..+++|++||++
T Consensus 369 ~~~L~~L~L~~n~---i~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 369 GSVLRVLWLADCD---VSDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp TCCCCEEECTTSC---CCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred CCceEEEECCCCC---CChhhHHHHHHHHHhCCCccEEECC
Confidence 5677777777777 765 667777777777777764
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.43 E-value=4.3e-05 Score=52.87 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=18.2
Q ss_pred CCCCeEeccCCCCCccccc----ChHhhhCCCCCcEEecC
Q 034444 59 ENLRYLNLSNLSSGRLCGS----IPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 59 ~~L~~L~ls~N~~~~l~g~----iP~~i~~l~~L~~L~ls 94 (94)
++|++|++++|+ +++. ++..+..+++|++|+++
T Consensus 142 ~~L~~L~L~~n~---l~~~~~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 142 CRLEKLQLEYCS---LSAASCEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp CCCCEEECTTSC---CBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred CcceEEECCCCC---CCHHHHHHHHHHHhhCCCCCEEECc
Confidence 456666666665 5542 34445555666666653
No 137
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.38 E-value=6.9e-05 Score=54.99 Aligned_cols=62 Identities=16% Similarity=0.092 Sum_probs=47.2
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc----ccCCchhhhcCCCCCeEeccCCCCCcccccChHhhhCC
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH----GIQIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNL 85 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~----~~~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l 85 (94)
.++.|++++ |.++ .+|..+.++..|.- ...+|..+.++++|+.|++++|. +++.+|..+..+
T Consensus 242 ~L~~L~Ls~--------N~L~-~lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~---l~~~~~~~l~~L 307 (622)
T 3g06_A 242 ELKELMVSG--------NRLT-SLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP---LSERTLQALREI 307 (622)
T ss_dssp TCCEEECCS--------SCCS-CCCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC---CCHHHHHHHHHH
T ss_pred cCcEEECCC--------CCCC-cCCcccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC---CCCcCHHHHHhc
Confidence 455666666 9998 68874444444433 45899999999999999999999 999888876644
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.11 E-value=0.00012 Score=50.47 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=22.9
Q ss_pred chhhhcCCCCCeEeccCCCCCcccc----cChHhhhCCCCCcEEecC
Q 034444 52 PIYIASLENLRYLNLSNLSSGRLCG----SIPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 52 P~~i~~l~~L~~L~ls~N~~~~l~g----~iP~~i~~l~~L~~L~ls 94 (94)
+..+...++|+.|+|++|. ++. .++..+...++|++|||+
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~---i~~~g~~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNG---AGDTAALALARAAREHPSLELLHLY 247 (372)
T ss_dssp HHHGGGCSCCCEEECCSSC---CCHHHHHHHHHHHHHCSSCCEEECT
T ss_pred HHHHhcCCCcCeEECCCCC---CCHHHHHHHHHHHHhCCCCCEEecc
Confidence 4445556667777777666 553 233344455666666663
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.10 E-value=0.00015 Score=51.69 Aligned_cols=40 Identities=5% Similarity=0.106 Sum_probs=30.3
Q ss_pred CCchhhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEec
Q 034444 50 QIPIYIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 50 ~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~l 93 (94)
.++..+.++++|+.|++++|. +.+ +|..++.+++|+.|++
T Consensus 211 ~l~~~~~~~~~L~~L~L~~~~---~~~-l~~~~~~~~~L~~L~l 250 (592)
T 3ogk_B 211 DLETIARNCRSLVSVKVGDFE---ILE-LVGFFKAAANLEEFCG 250 (592)
T ss_dssp HHHHHHHHCTTCCEEECSSCB---GGG-GHHHHHHCTTCCEEEE
T ss_pred HHHHHHhhCCCCcEEeccCcc---HHH-HHHHHhhhhHHHhhcc
Confidence 344456678888888888888 774 7777888888887776
No 140
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.02 E-value=0.00015 Score=51.52 Aligned_cols=72 Identities=15% Similarity=0.091 Sum_probs=46.3
Q ss_pred cEEEEEeCCCCCCCCcccceeeeCCcccc-CCcCccc---cc-------CCchhhhcCCCCCeEeccCCCCCcccccChH
Q 034444 12 RVIELKLGNHFTYIGSVAELHANYRKSKL-VGKHLIH---GI-------QIPIYIASLENLRYLNLSNLSSGRLCGSIPS 80 (94)
Q Consensus 12 ~v~~L~l~~~~~~~~~~n~l~g~~p~~l~-~l~~L~~---~~-------~iP~~i~~l~~L~~L~ls~N~~~~l~g~iP~ 80 (94)
+++.|++++ +.+++..+..+. .+++|+. .+ .++..+..+++|++|++++|. +++..+.
T Consensus 106 ~L~~L~L~~--------~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~---i~~~~~~ 174 (594)
T 2p1m_B 106 WLEEIRLKR--------MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD---VDDVSGH 174 (594)
T ss_dssp TCCEEEEES--------CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE---EECCCGG
T ss_pred CCCeEEeeC--------cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc---cCCcchH
Confidence 567777777 777665554443 3555555 11 144455678899999999888 7765555
Q ss_pred hhh----CCCCCcEEecC
Q 034444 81 SLG----NLYSFTSFDTF 94 (94)
Q Consensus 81 ~i~----~l~~L~~L~ls 94 (94)
.+. .+++|+.|+++
T Consensus 175 ~l~~~~~~~~~L~~L~l~ 192 (594)
T 2p1m_B 175 WLSHFPDTYTSLVSLNIS 192 (594)
T ss_dssp GGGGSCTTCCCCCEEECT
T ss_pred HHHHHhhcCCcCcEEEec
Confidence 443 45577777763
No 141
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.97 E-value=0.00048 Score=45.84 Aligned_cols=18 Identities=6% Similarity=-0.044 Sum_probs=10.7
Q ss_pred CcceEecCCCCcEEEEEe
Q 034444 1 MADVVCNNFTGRVIELKL 18 (94)
Q Consensus 1 w~gv~c~~~~~~v~~L~l 18 (94)
|.|+.|+....+|..+..
T Consensus 80 ~~g~i~~~~~~ki~~~v~ 97 (267)
T 3rw6_A 80 VNYKILDRENRRISIIIN 97 (267)
T ss_dssp TTSSCBCTTSCBCCCEEE
T ss_pred cCcEEECCCCCEEEEEEe
Confidence 778888754445544433
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.83 E-value=0.00057 Score=47.06 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=25.9
Q ss_pred CchhhhcCCCCCeEeccCCCCCccccc----ChHhhhCCCCCcEEecC
Q 034444 51 IPIYIASLENLRYLNLSNLSSGRLCGS----IPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 51 iP~~i~~l~~L~~L~ls~N~~~~l~g~----iP~~i~~l~~L~~L~ls 94 (94)
++..+..+++|++|+|++|+ ++.. ++..+...++|+.|||+
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~---l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTG---LGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSS---CHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred HHHHHhcCCCcCEEeCCCCC---CCcHHHHHHHHHHhcCCCcCeEECC
Confidence 44445667777777777777 6532 34555666677777764
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.79 E-value=0.00013 Score=51.88 Aligned_cols=9 Identities=0% Similarity=0.191 Sum_probs=5.4
Q ss_pred cEEEEEeCC
Q 034444 12 RVIELKLGN 20 (94)
Q Consensus 12 ~v~~L~l~~ 20 (94)
.++.|+|++
T Consensus 113 ~L~~L~L~~ 121 (592)
T 3ogk_B 113 QLKSVHFRR 121 (592)
T ss_dssp TCCEEEEES
T ss_pred CCCeEEeec
Confidence 356666666
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.28 E-value=0.0058 Score=40.80 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=20.9
Q ss_pred hhhcCCCCCeEeccCCCCCcccccCh-HhhhCCCCCcEEe
Q 034444 54 YIASLENLRYLNLSNLSSGRLCGSIP-SSLGNLYSFTSFD 92 (94)
Q Consensus 54 ~i~~l~~L~~L~ls~N~~~~l~g~iP-~~i~~l~~L~~L~ 92 (94)
.|..+++|+.++++.|+ ++ .|+ ..+.++++|+.++
T Consensus 292 aF~~c~~L~~l~l~~n~---i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDK---IT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTEEEEEECSSC---CC-EECTTTTCTTCCCCEEE
T ss_pred hhhCCccCCEEEeCCCc---cC-ccchhhhcCCcchhhhc
Confidence 45666666666666666 55 333 3556666666654
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.11 E-value=0.0021 Score=39.88 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=16.4
Q ss_pred hhcCCCCCeEeccCCCCCccccc----ChHhhhCCCCCcEEec
Q 034444 55 IASLENLRYLNLSNLSSGRLCGS----IPSSLGNLYSFTSFDT 93 (94)
Q Consensus 55 i~~l~~L~~L~ls~N~~~~l~g~----iP~~i~~l~~L~~L~l 93 (94)
+...++|++|+|++|+ +... +...+...++|++|+|
T Consensus 89 L~~n~~L~~L~L~~N~---i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 89 LKVNNTLKSLNVESNF---ISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHCSSCCEEECCSSC---CCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred HHhCCCcCEEECcCCc---CCHHHHHHHHHHHHhCCCceEEEe
Confidence 3344555555555555 4321 2333444445555554
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.01 E-value=0.0099 Score=39.65 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=54.6
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCC-ccccCCcCccc------ccCCch-hhhcCCCCC-eEeccCCCCCcccccCh-H
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYR-KSKLVGKHLIH------GIQIPI-YIASLENLR-YLNLSNLSSGRLCGSIP-S 80 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p-~~l~~l~~L~~------~~~iP~-~i~~l~~L~-~L~ls~N~~~~l~g~iP-~ 80 (94)
..++.+++++ |+++ .|| ..|..+.+|+. ...|++ .|..+++|+ .+++++ + ++ .|+ .
T Consensus 226 ~~L~~l~L~~--------n~i~-~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~---l~-~I~~~ 291 (329)
T 3sb4_A 226 PNLVSLDISK--------TNAT-TIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-S---VT-AIEFG 291 (329)
T ss_dssp TTCCEEECTT--------BCCC-EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-T---CC-EECTT
T ss_pred CCCeEEECCC--------CCcc-eecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-c---ce-EEchh
Confidence 4689999999 9988 565 46788888887 334655 589999999 999998 5 66 454 6
Q ss_pred hhhCCCCCcEEec
Q 034444 81 SLGNLYSFTSFDT 93 (94)
Q Consensus 81 ~i~~l~~L~~L~l 93 (94)
.+..+++|+.+++
T Consensus 292 aF~~c~~L~~l~l 304 (329)
T 3sb4_A 292 AFMGCDNLRYVLA 304 (329)
T ss_dssp TTTTCTTEEEEEE
T ss_pred hhhCCccCCEEEe
Confidence 7899999999987
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.95 E-value=0.004 Score=39.07 Aligned_cols=74 Identities=4% Similarity=-0.092 Sum_probs=47.7
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCccccCCcCccc---cc--CCch----hhhcC----CCCCeEeccCCCCCccccc
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKLVGKHLIH---GI--QIPI----YIASL----ENLRYLNLSNLSSGRLCGS 77 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~~l~~L~~---~~--~iP~----~i~~l----~~L~~L~ls~N~~~~l~g~ 77 (94)
-.+++||+++ +.++..--..+..+++|+. .+ .|-+ .++.+ ++|++|+++++.- ++..
T Consensus 61 ~~L~~LDLs~--------~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~--ITD~ 130 (176)
T 3e4g_A 61 YKIQAIDATD--------SCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN--VTDK 130 (176)
T ss_dssp CCEEEEEEES--------CCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT--CCHH
T ss_pred ceEeEEeCcC--------CCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc--CCHH
Confidence 3589999999 7765433344566777776 21 2333 35554 3799999998751 4432
Q ss_pred ChHhhhCCCCCcEEecC
Q 034444 78 IPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 78 iP~~i~~l~~L~~L~ls 94 (94)
==..++.+++|+.|+++
T Consensus 131 Gl~~L~~~~~L~~L~L~ 147 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLS 147 (176)
T ss_dssp HHHHGGGCTTCCEEEEE
T ss_pred HHHHHhcCCCCCEEECC
Confidence 22457788999999874
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.92 E-value=0.0061 Score=43.27 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=44.2
Q ss_pred CcEEEEEeCCCCCCCCcccceeeeCCcccc----CCcCccc------ccCCc-----hhhhcCCCCCeEeccCCCCCccc
Q 034444 11 GRVIELKLGNHFTYIGSVAELHANYRKSKL----VGKHLIH------GIQIP-----IYIASLENLRYLNLSNLSSGRLC 75 (94)
Q Consensus 11 ~~v~~L~l~~~~~~~~~~n~l~g~~p~~l~----~l~~L~~------~~~iP-----~~i~~l~~L~~L~ls~N~~~~l~ 75 (94)
..++.|++++ |.+++..+..+. .+++|+. .+.++ .-+..+++|++|++++|.. +.
T Consensus 156 ~~L~~L~L~~--------~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~--~~ 225 (594)
T 2p1m_B 156 RNLKELDLRE--------SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP--LE 225 (594)
T ss_dssp TTCCEEECTT--------CEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC--HH
T ss_pred CCCCEEeCcC--------CccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc--HH
Confidence 3466777777 777654333222 3445554 11232 2235579999999998841 55
Q ss_pred ccChHhhhCCCCCcEEec
Q 034444 76 GSIPSSLGNLYSFTSFDT 93 (94)
Q Consensus 76 g~iP~~i~~l~~L~~L~l 93 (94)
.+|..+..+++|+.|++
T Consensus 226 -~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 226 -KLATLLQRAPQLEELGT 242 (594)
T ss_dssp -HHHHHHHHCTTCSEEEC
T ss_pred -HHHHHHhcCCcceEccc
Confidence 48888888888888863
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.31 E-value=0.0039 Score=38.70 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=31.0
Q ss_pred CchhhhcCCCCCeEec--cCCCCCccccc----ChHhhhCCCCCcEEecC
Q 034444 51 IPIYIASLENLRYLNL--SNLSSGRLCGS----IPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 51 iP~~i~~l~~L~~L~l--s~N~~~~l~g~----iP~~i~~l~~L~~L~ls 94 (94)
+...+...++|++|++ ++|. +... +-..+...++|+.|+|+
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~---i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQP---LGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSC---CCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHhCCCceEEEecCCCCC---CCHHHHHHHHHHHHhCCCcCEEecc
Confidence 4556777899999999 8898 7643 34456667899999885
No 150
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.29 E-value=0.018 Score=33.93 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=16.3
Q ss_pred CCCeEeccCCCCCcccccChH-hhhCCCCCcEEec
Q 034444 60 NLRYLNLSNLSSGRLCGSIPS-SLGNLYSFTSFDT 93 (94)
Q Consensus 60 ~L~~L~ls~N~~~~l~g~iP~-~i~~l~~L~~L~l 93 (94)
+|+.|+|++|+ ++ .+|. .+..+++|+.|+|
T Consensus 32 ~l~~L~Ls~N~---l~-~l~~~~f~~l~~L~~L~L 62 (130)
T 3rfe_A 32 DTTELVLTGNN---LT-ALPPGLLDALPALRTAHL 62 (130)
T ss_dssp TCSEEECTTSC---CS-SCCTTTGGGCTTCCEEEC
T ss_pred CCCEEECCCCc---CC-ccChhhhhhccccCEEEe
Confidence 45566666666 55 3443 3455556666554
No 151
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.02 E-value=0.14 Score=30.05 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=17.3
Q ss_pred ccCCch-hhhcCCCCCeEeccCCC
Q 034444 48 GIQIPI-YIASLENLRYLNLSNLS 70 (94)
Q Consensus 48 ~~~iP~-~i~~l~~L~~L~ls~N~ 70 (94)
...+|. .+..+++|+.|+|++|.
T Consensus 43 l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 43 LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCccChhhhhhccccCEEEecCCC
Confidence 334554 46778899999999997
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=90.62 E-value=0.076 Score=36.46 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=21.3
Q ss_pred cCCCCCeEeccCCCCCccccc----ChHhhhCCCCCcEEecC
Q 034444 57 SLENLRYLNLSNLSSGRLCGS----IPSSLGNLYSFTSFDTF 94 (94)
Q Consensus 57 ~l~~L~~L~ls~N~~~~l~g~----iP~~i~~l~~L~~L~ls 94 (94)
.+++|++|+|+.|. +.+. ++..+..+++|+.|+++
T Consensus 277 ~~~~L~~LdLs~n~---L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 277 ILPQLETMDISAGV---LTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp SGGGCSEEECCSSC---CBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred cCCCCCEEECCCCC---CChHHHHHHHhhcccCCcceEEECC
Confidence 35677777777777 6543 33344456677777663
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=88.78 E-value=0.24 Score=30.88 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=25.6
Q ss_pred hhhcCCCCCeEeccCCCCCcccccChHhhhCC----CCCcEEecC
Q 034444 54 YIASLENLRYLNLSNLSSGRLCGSIPSSLGNL----YSFTSFDTF 94 (94)
Q Consensus 54 ~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l----~~L~~L~ls 94 (94)
.+..+++|+.|+|+++.- ++..-=..++.+ ++|+.|+|+
T Consensus 80 ~L~~~~~L~~L~L~~C~~--ItD~gL~~L~~~~~~~~~L~~L~Ls 122 (176)
T 3e4g_A 80 HMEGLQYVEKIRLCKCHY--IEDGCLERLSQLENLQKSMLEMEII 122 (176)
T ss_dssp GGTTCSCCCEEEEESCTT--CCHHHHHHHHTCHHHHHHCCEEEEE
T ss_pred HhcCCCCCCEEEeCCCCc--cCHHHHHHHHhcccccCCCCEEEcC
Confidence 367889999999998751 443222345554 368888874
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=87.50 E-value=0.27 Score=33.67 Aligned_cols=10 Identities=20% Similarity=0.182 Sum_probs=5.5
Q ss_pred CcEEEEEeCC
Q 034444 11 GRVIELKLGN 20 (94)
Q Consensus 11 ~~v~~L~l~~ 20 (94)
..+++|.+.+
T Consensus 172 P~L~~L~L~g 181 (362)
T 2ra8_A 172 PLLNNLKIKG 181 (362)
T ss_dssp TTCCEEEEEC
T ss_pred CCCcEEEEeC
Confidence 3456666655
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=84.97 E-value=1.2 Score=30.75 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=20.1
Q ss_pred hhhcCCCCCeEeccCCCCCcccccChHhhhCCCCCcEEe
Q 034444 54 YIASLENLRYLNLSNLSSGRLCGSIPSSLGNLYSFTSFD 92 (94)
Q Consensus 54 ~i~~l~~L~~L~ls~N~~~~l~g~iP~~i~~l~~L~~L~ 92 (94)
.|..+++|+.+++++|+ ++ .+|...-...+|+.+.
T Consensus 175 aF~~c~~L~~l~l~~n~---l~-~I~~~aF~~~~L~~l~ 209 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTK---IT-KLPASTFVYAGIEEVL 209 (401)
T ss_dssp TTTTCTTCCEEECTTSC---CS-EECTTTTTTCCCSEEE
T ss_pred HhhCcccCCeeecCCCc---ce-EechhhEeecccCEEE
Confidence 46777888888887776 55 4444322234444443
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=81.51 E-value=2.4 Score=29.17 Aligned_cols=6 Identities=33% Similarity=0.634 Sum_probs=2.4
Q ss_pred EEEEEe
Q 034444 13 VIELKL 18 (94)
Q Consensus 13 v~~L~l 18 (94)
++.+.+
T Consensus 250 L~~i~l 255 (401)
T 4fdw_A 250 ITTVKL 255 (401)
T ss_dssp CSEEEE
T ss_pred ccEEEe
Confidence 334444
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=75.08 E-value=1.6 Score=27.60 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=10.1
Q ss_pred hhhcCCCCCeEeccCCC
Q 034444 54 YIASLENLRYLNLSNLS 70 (94)
Q Consensus 54 ~i~~l~~L~~L~ls~N~ 70 (94)
.+..-+.|+.|+|++|+
T Consensus 93 aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 93 LIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHCSSCCEEECCSSB
T ss_pred HHhcCCccCeEecCCCc
Confidence 34444566666666666
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=71.62 E-value=12 Score=24.93 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=7.4
Q ss_pred hhcCCCCCeEeccCCC
Q 034444 55 IASLENLRYLNLSNLS 70 (94)
Q Consensus 55 i~~l~~L~~L~ls~N~ 70 (94)
+..+++|+.+.+.++.
T Consensus 282 F~~c~~L~~i~l~~~~ 297 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSA 297 (379)
T ss_dssp TTTCTTCCEEEECCTT
T ss_pred cccccccccccccccc
Confidence 3444445555444444
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=66.09 E-value=15 Score=24.71 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=22.1
Q ss_pred hhhcCCCCCeEeccCCCCCcccccCh-HhhhCCCCCcEEec
Q 034444 54 YIASLENLRYLNLSNLSSGRLCGSIP-SSLGNLYSFTSFDT 93 (94)
Q Consensus 54 ~i~~l~~L~~L~ls~N~~~~l~g~iP-~~i~~l~~L~~L~l 93 (94)
.|..+++|+.+.+.++ ++ .|. ..+.++++|+.+++
T Consensus 329 aF~~C~~L~~i~ip~s----v~-~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS----VT-KIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTTTCTTCCEEEECTT----CC-BCCGGGGTTCTTCCEEEE
T ss_pred HhhCCCCCCEEEECcc----cC-EEhHhHhhCCCCCCEEEE
Confidence 4666777777777654 33 344 35677777777765
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=66.05 E-value=13 Score=24.98 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=18.9
Q ss_pred hhhcCCCCCeEeccCCCCCcccccCh-HhhhCCCCCcEEec
Q 034444 54 YIASLENLRYLNLSNLSSGRLCGSIP-SSLGNLYSFTSFDT 93 (94)
Q Consensus 54 ~i~~l~~L~~L~ls~N~~~~l~g~iP-~~i~~l~~L~~L~l 93 (94)
.|.++++|+.+++..| ++ .|+ ..+.++.+|+.+++
T Consensus 338 aF~~c~~L~~i~lp~~----l~-~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 338 SFRGCTSLSNINFPLS----LR-KIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TTTTCTTCCEECCCTT----CC-EECTTTBTTCTTCCEEEE
T ss_pred hccCCCCCCEEEECcc----cc-EehHHHhhCCCCCCEEEE
Confidence 4556666666666544 22 232 24556666666554
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=56.87 E-value=24 Score=23.66 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=7.0
Q ss_pred hhcCCCCCeEeccCC
Q 034444 55 IASLENLRYLNLSNL 69 (94)
Q Consensus 55 i~~l~~L~~L~ls~N 69 (94)
|.++++|+.+++.++
T Consensus 353 F~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 353 FSNCTALNNIEYSGS 367 (394)
T ss_dssp GTTCTTCCEEEESSC
T ss_pred hhCCCCCCEEEECCc
Confidence 444444554444443
Done!