BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034446
         (94 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6W8W5|POL1_ARMVN RNA1 polyprotein OS=Arabis mosaic virus (isolate NW) PE=3 SV=1
          Length = 2284

 Score = 32.3 bits (72), Expect = 0.86,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 26   FGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTLGAATSCSGLIGTEKALCHLEQAKAS 85
            + S + L E +  LLT + +L L+ T Y   +  +G A  CS   G   AL H+  A   
Sbjct: 1157 YKSKAKLVENYSLLLTLVAILVLIATAYSLISTLIGLA-GCSSFAGGMVALNHVSNASIP 1215

Query: 86   VAKGKLK 92
             ++ +L+
Sbjct: 1216 CSEPRLE 1222


>sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
           OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2
          Length = 1020

 Score = 30.8 bits (68), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 36/78 (46%)

Query: 11  HRRSSSFKRQFTKDEFGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTLGAATSCSGLI 70
           HR+  + KR+  K E  +W   A+ ++ LL  +    L   +    ++ LG        I
Sbjct: 179 HRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKI 238

Query: 71  GTEKALCHLEQAKASVAK 88
             E+ LC   ++KA+ AK
Sbjct: 239 AEEQELCSQGKSKAAYAK 256


>sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial
           OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2
          Length = 1021

 Score = 30.8 bits (68), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 36/78 (46%)

Query: 11  HRRSSSFKRQFTKDEFGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTLGAATSCSGLI 70
           HR+  + KR+  K E  +W   A+ ++ LL  +    L   +    ++ LG        I
Sbjct: 180 HRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKI 239

Query: 71  GTEKALCHLEQAKASVAK 88
             E+ LC   ++KA+ AK
Sbjct: 240 AEEQELCSQGKSKAAYAK 257


>sp|Q83F26|MRAY_COXBU Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Coxiella
           burnetii (strain RSA 493 / Nine Mile phase I) GN=mraY
           PE=3 SV=1
          Length = 361

 Score = 30.4 bits (67), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 32  LAERHRFLLTALVLLGLLCTIYLYFAVTLGAATS 65
           L+ R ++LL +++  G L  +YLYF+ T GA T+
Sbjct: 128 LSARSKYLLQSII--GALAAVYLYFSATTGAETA 159


>sp|A9KES2|MRAY_COXBN Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Coxiella
           burnetii (strain Dugway 5J108-111) GN=mraY PE=3 SV=1
          Length = 361

 Score = 30.4 bits (67), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 32  LAERHRFLLTALVLLGLLCTIYLYFAVTLGAATS 65
           L+ R ++LL +++  G L  +YLYF+ T GA T+
Sbjct: 128 LSARSKYLLQSII--GALAAVYLYFSATTGAETA 159


>sp|B6J2Q9|MRAY_COXB2 Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Coxiella
           burnetii (strain CbuG_Q212) GN=mraY PE=3 SV=1
          Length = 361

 Score = 30.4 bits (67), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 32  LAERHRFLLTALVLLGLLCTIYLYFAVTLGAATS 65
           L+ R ++LL +++  G L  +YLYF+ T GA T+
Sbjct: 128 LSARSKYLLQSII--GALAAVYLYFSATTGAETA 159


>sp|B6J5K9|MRAY_COXB1 Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Coxiella
           burnetii (strain CbuK_Q154) GN=mraY PE=3 SV=1
          Length = 361

 Score = 30.4 bits (67), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 32  LAERHRFLLTALVLLGLLCTIYLYFAVTLGAATS 65
           L+ R ++LL +++  G L  +YLYF+ T GA T+
Sbjct: 128 LSARSKYLLQSII--GALAAVYLYFSATTGAETA 159


>sp|A9NA35|MRAY_COXBR Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Coxiella
           burnetii (strain RSA 331 / Henzerling II) GN=mraY PE=3
           SV=1
          Length = 361

 Score = 30.4 bits (67), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 32  LAERHRFLLTALVLLGLLCTIYLYFAVTLGAATS 65
           L+ R ++LL +++  G L  +YLYF+ T GA T+
Sbjct: 128 LSARSKYLLQSII--GALAAVYLYFSATTGAETA 159


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.134    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,413,218
Number of Sequences: 539616
Number of extensions: 896300
Number of successful extensions: 2949
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2949
Number of HSP's gapped (non-prelim): 9
length of query: 94
length of database: 191,569,459
effective HSP length: 64
effective length of query: 30
effective length of database: 157,034,035
effective search space: 4711021050
effective search space used: 4711021050
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)