Query 034446
Match_columns 94
No_of_seqs 19 out of 21
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 04:09:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bnx_A Protein (BAND 3); human 66.7 1.8 6.1E-05 24.5 0.8 12 51-62 13-29 (34)
2 1btq_A BAND 3 anion transport 52.2 8.2 0.00028 20.7 1.8 10 49-58 4-13 (26)
3 1bzk_A Protein (BAND 3 anion t 42.9 13 0.00046 21.6 1.8 11 48-58 19-29 (43)
4 3gvz_A Uncharacterized protein 40.4 4.6 0.00016 30.2 -0.6 31 33-73 3-33 (299)
5 3c75_A Amicyanin; copper prote 20.8 21 0.00071 23.2 0.0 20 28-51 3-22 (132)
6 2wdq_C Succinate dehydrogenase 18.9 1.4E+02 0.0048 19.4 3.8 23 13-35 9-31 (129)
7 2zt9_E Cytochrome B6-F complex 16.9 83 0.0028 17.5 1.9 17 45-61 4-20 (31)
8 3s8f_B Cytochrome C oxidase su 15.6 2E+02 0.007 20.0 4.2 41 36-76 16-59 (168)
9 3kp9_A Vkorc1/thioredoxin doma 14.4 2.1E+02 0.0071 21.4 4.2 32 37-68 20-52 (291)
10 1tzs_P Activation peptide from 13.8 18 0.0006 17.7 -1.4 26 9-36 6-31 (35)
No 1
>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide, electron transport; NMR {Synthetic} SCOP: j.35.1.1
Probab=66.72 E-value=1.8 Score=24.50 Aligned_cols=12 Identities=50% Similarity=1.215 Sum_probs=9.3
Q ss_pred HHHHHHH-----HHhCC
Q 034446 51 TIYLYFA-----VTLGA 62 (94)
Q Consensus 51 TiYLYFA-----VTLGa 62 (94)
|+|+||| ||+|.
T Consensus 13 ~~fiyFa~l~PaIaFg~ 29 (34)
T 1bnx_A 13 VIFIYFAALSPAITFGG 29 (34)
T ss_dssp HHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 8999996 56663
No 2
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=52.22 E-value=8.2 Score=20.70 Aligned_cols=10 Identities=40% Similarity=0.949 Sum_probs=7.7
Q ss_pred HHHHHHHHHH
Q 034446 49 LCTIYLYFAV 58 (94)
Q Consensus 49 LCTiYLYFAV 58 (94)
-.+||+|||.
T Consensus 4 aa~~FlyFa~ 13 (26)
T 1btq_A 4 AAVIFIYFAA 13 (26)
T ss_pred HHHHHHHHHH
Confidence 4578999974
No 3
>1bzk_A Protein (BAND 3 anion transport protein); human erythrocyte anion transporter, transmembrane, synthetic peptide; NMR {Synthetic} SCOP: j.35.1.1
Probab=42.92 E-value=13 Score=21.57 Aligned_cols=11 Identities=45% Similarity=0.984 Sum_probs=8.4
Q ss_pred HHHHHHHHHHH
Q 034446 48 LLCTIYLYFAV 58 (94)
Q Consensus 48 ~LCTiYLYFAV 58 (94)
+-.|+|+|||.
T Consensus 19 laa~~fiyFa~ 29 (43)
T 1bzk_A 19 LAAVIFIYFAA 29 (43)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 44689999973
No 4
>3gvz_A Uncharacterized protein CV2077; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum atcc 12472}
Probab=40.36 E-value=4.6 Score=30.23 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCcccc
Q 034446 33 AERHRFLLTALVLLGLLCTIYLYFAVTLGAATSCSGLIGTE 73 (94)
Q Consensus 33 ~~RHrFLLt~L~lL~~LCTiYLYFAVTLGa~~sCsGLtG~~ 73 (94)
||||||+..++.+.. |. + .+.+-||.+.-..
T Consensus 3 ~~~~~~~~~~~~~~~-~~-----~----~~~~gCT~~~~~~ 33 (299)
T 3gvz_A 3 VMRHSWLAVAGIAGL-LA-----F----PPVDACTLWGAAG 33 (299)
T ss_dssp ---------------------------------CEEEEEEG
T ss_pred hhhHHHHHHHHHHHH-Hh-----c----cCCCCCceEEECC
Confidence 799999876553322 22 1 2455688876544
No 5
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=20.79 E-value=21 Score=23.18 Aligned_cols=20 Identities=35% Similarity=0.360 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q 034446 28 SWSTLAERHRFLLTALVLLGLLCT 51 (94)
Q Consensus 28 SWstL~~RHrFLLt~L~lL~~LCT 51 (94)
||+.| |.+|.+++++++.|+
T Consensus 3 ~~~~~----~~~l~~~~~~~~~~~ 22 (132)
T 3c75_A 3 SAKTL----RPAIAAIALFAIGAT 22 (132)
T ss_dssp ------------------------
T ss_pred chhhH----HHHHHHHHHHHHHhh
Confidence 45544 778888888776653
No 6
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=18.94 E-value=1.4e+02 Score=19.35 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=14.7
Q ss_pred CCCcccccccccccCCHHHHHHH
Q 034446 13 RSSSFKRQFTKDEFGSWSTLAER 35 (94)
Q Consensus 13 rs~sfkrqf~~delgSWstL~~R 35 (94)
|+-|+.-|.-|....+|..+++|
T Consensus 9 RP~sphl~iyr~~~t~~~silhR 31 (129)
T 2wdq_C 9 RPVNLDLQTIRFPITAIASILHR 31 (129)
T ss_dssp CCBCCCGGGSCCCHHHHHHHHHH
T ss_pred CCCCCCcCccCCcHHHHHHHHHH
Confidence 33334444445677899999966
No 7
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=16.91 E-value=83 Score=17.50 Aligned_cols=17 Identities=12% Similarity=0.409 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhC
Q 034446 45 LLGLLCTIYLYFAVTLG 61 (94)
Q Consensus 45 lL~~LCTiYLYFAVTLG 61 (94)
+..+.-.+-.+|++++|
T Consensus 4 ~i~y~~~l~~~~~iA~G 20 (31)
T 2zt9_E 4 IVAYIGFLALFTGIAAG 20 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444445555554
No 8
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=15.56 E-value=2e+02 Score=20.02 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hCCCC-cccCCcccchhh
Q 034446 36 HRFLLTALVLLGLLCTIYLYFAVT--LGAAT-SCSGLIGTEKAL 76 (94)
Q Consensus 36 HrFLLt~L~lL~~LCTiYLYFAVT--LGa~~-sCsGLtG~~k~~ 76 (94)
-+||..++++|+++-.+-.|-|+. +|-.- +|.|-...++..
T Consensus 16 ~~w~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~idp~~~~ 59 (168)
T 3s8f_B 16 KGWLAFSLAMLFVFIALIAYTLATHTAGVIPAGKLERVDPTTVR 59 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSGGGGGSCCCSCCBCCTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhcCcCCCccCccChhhhc
Confidence 367888888888888888887777 87655 676665555543
No 9
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=14.38 E-value=2.1e+02 Score=21.37 Aligned_cols=32 Identities=38% Similarity=0.587 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCCcccC
Q 034446 37 RFLLTALVLLGLLCTIYLYFAVTLG-AATSCSG 68 (94)
Q Consensus 37 rFLLt~L~lL~~LCTiYLYFAVTLG-a~~sCsG 68 (94)
|+++.++++++++-+.||.+-=.-+ ..-.|+.
T Consensus 20 ~~~~~~l~~iGl~~s~yLt~~~~~~~~~~~C~~ 52 (291)
T 3kp9_A 20 RLILAILAGLGSLLTAYLTYTKLTEQPAAFCTG 52 (291)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHCCCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 5678899999999999997653334 5668875
No 10
>1tzs_P Activation peptide from cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=13.76 E-value=18 Score=17.73 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=17.2
Q ss_pred CCCCCCCcccccccccccCCHHHHHHHH
Q 034446 9 SPHRRSSSFKRQFTKDEFGSWSTLAERH 36 (94)
Q Consensus 9 Sp~rrs~sfkrqf~~delgSWstL~~RH 36 (94)
=|-+|.+|+|+.+ .|.|.|..+++.|
T Consensus 6 IpL~K~~s~r~~l--~~~g~~~~~l~~~ 31 (35)
T 1tzs_P 6 VPLRRHPSLKKKL--RARSQLSEFWKSH 31 (35)
T ss_pred EEeEEchHHHHHH--HHcccHHHHHHhc
Confidence 3656777888774 3457887776544
Done!