BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034447
(94 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BQO|A Chain A, Crystal Structure Of Trf1 Trfh Domain And Tin2 Peptide
Complex
Length = 211
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 28 ALEIYNSITDESDKVNVFICNLI----LSCLVRNGKFESSLKLFDKI 70
AL I+ SI E DK++ I NLI ++ + NG F+ + ++F++I
Sbjct: 97 ALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERI 143
>pdb|1H6O|A Chain A, Dimerisation Domain From Human Trf1
Length = 204
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 28 ALEIYNSITDESDKVNVFICNLI----LSCLVRNGKFESSLKLFDKI 70
AL I+ SI E DK++ I NLI ++ + NG F+ + ++F++I
Sbjct: 93 ALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERI 139
>pdb|3L82|A Chain A, X-Ray Crystal Structure Of Trf1 And Fbx4 Complex
Length = 215
Score = 29.3 bits (64), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 28 ALEIYNSITDESDKVNVFICNLI----LSCLVRNGKFESSLKLFDKI 70
AL I+ SI E DK++ I NLI ++ NG F+ + ++F++I
Sbjct: 101 ALXIWGSIEKEHDKLHEEIQNLIKIQAIAVCXENGNFKEAEEVFERI 147
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 48 NLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87
N ++ R G F+ + + +K +GLTPD ++Y Q
Sbjct: 169 NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
>pdb|3BYK|A Chain A, Crystal Structure Of B. Subtilis Levansucrase Mutant D247a
Length = 473
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Query: 26 LKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTV 85
+K L N++TDE ++ NVF NGK+ LF + S +T D +T N +
Sbjct: 328 MKPLIASNTVTDEIERANVFKM---------NGKW----YLFTDSRGSKMTIDGITSNDI 374
Query: 86 YQSDHIT 92
Y +++
Sbjct: 375 YMLGYVS 381
>pdb|3BYJ|A Chain A, Crystal Structure Of B. Subtilis Levansucrase Mutant D86a
Length = 473
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Query: 26 LKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTV 85
+K L N++TDE ++ NVF NGK+ LF + S +T D +T N +
Sbjct: 328 MKPLIASNTVTDEIERANVFKM---------NGKW----YLFTDSRGSKMTIDGITSNDI 374
Query: 86 YQSDHIT 92
Y +++
Sbjct: 375 YMLGYVS 381
>pdb|1OYG|A Chain A, Crystal Structure Of Bacillus Subtilis Levansucrase
Length = 447
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 26 LKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTV 85
+K L N++TDE ++ NVF NGK+ LF + S +T D +T N +
Sbjct: 302 MKPLIASNTVTDEIERANVFKM---------NGKW----YLFTDSRGSKMTIDGITSNDI 348
Query: 86 Y 86
Y
Sbjct: 349 Y 349
>pdb|2VDT|A Chain A, Crystallographic Structure Of Levansucrase From Bacillus
Subtilis Mutant S164a
Length = 439
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 26 LKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTV 85
+K L N++TDE ++ NVF NGK+ LF + S +T D +T N +
Sbjct: 295 MKPLIASNTVTDEIERANVFKM---------NGKW----YLFTDSRGSKMTIDGITSNDI 341
Query: 86 Y 86
Y
Sbjct: 342 Y 342
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
pdb|1Z5Z|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
Length = 271
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 21 KNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRN 57
++G ++ +EI DE DK+ +F + + ++RN
Sbjct: 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRN 130
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
Length = 500
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 21 KNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRN 57
++G ++ +EI DE DK+ +F + + ++RN
Sbjct: 323 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRN 359
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 27 KALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKI 70
+ALEIY + D N + SC ++ GKF+ + L+ +I
Sbjct: 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221
>pdb|3BYL|A Chain A, Crystal Structure Of B. Subtilis Levansucrase Mutant E342a
pdb|3BYN|A Chain A, Crystal Structure Of B. Subtilis Levansucrase Mutant E342a
Bound To Raffinose
Length = 473
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 13/67 (19%)
Query: 26 LKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTV 85
+K L N++TDE + NVF NGK+ LF + S +T D +T N +
Sbjct: 328 MKPLIASNTVTDEIARANVFKM---------NGKWY----LFTDSRGSKMTIDGITSNDI 374
Query: 86 YQSDHIT 92
Y +++
Sbjct: 375 YMLGYVS 381
>pdb|1PT2|A Chain A, Crystal Structure Of Levansucrase (E342a) Complexed With
Sucrose
Length = 447
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 13/61 (21%)
Query: 26 LKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTV 85
+K L N++TDE + NVF NGK+ LF + S +T D +T N +
Sbjct: 302 MKPLIASNTVTDEIARANVFKM---------NGKW----YLFTDSRGSKMTIDGITSNDI 348
Query: 86 Y 86
Y
Sbjct: 349 Y 349
>pdb|1Z6M|A Chain A, Structure Of Conserved Protein Of Unknown Function From
Enterococcus Faecalis V583
Length = 175
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 50 ILSCLVRNGKFESSLKLFDKIKQS 73
+L+ V++GK E +KLFDK K+S
Sbjct: 52 LLAQSVKSGKVERIIKLFDKEKES 75
>pdb|3U4T|A Chain A, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b.
pdb|3U4T|B Chain B, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b
Length = 272
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 18 FLGKNGNSLKALEIYNSITDESDKVN-VFICNLILSCLVRNGKFESSLK 65
FL KN N +A+E++N + E+ K N +I N C K++ + K
Sbjct: 12 FLFKNNNYAEAIEVFNKL--EAKKYNSPYIYNRRAVCYYELAKYDLAQK 58
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 27 KALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKI 70
+ALEIY + D N + SC ++ GK++ + L+ +I
Sbjct: 152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 27 KALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKI 70
+ALEIY + D N + SC ++ GK++ + L+ +I
Sbjct: 152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195
>pdb|2OKB|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKB|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKB|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
Length = 137
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 21 KNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72
++G SLK ++I + DE + N+ + L+ NGK ++ D+I Q
Sbjct: 59 RSGLSLKGIDIGGGVIDEDYRGNIGV------ILINNGKCTFNVNTGDRIAQ 104
>pdb|2OKD|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKD|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKD|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKE|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKE|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKE|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL0|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL0|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL0|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL1|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL1|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL1|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
Length = 147
Score = 25.0 bits (53), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 21 KNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72
++G SLK ++I + DE + N+ + L+ NGK ++ D+I Q
Sbjct: 69 RSGLSLKGIDIGGGVIDEDYRGNIGV------ILINNGKCTFNVNTGDRIAQ 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,523,279
Number of Sequences: 62578
Number of extensions: 79880
Number of successful extensions: 177
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 25
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)