Query 034447
Match_columns 94
No_of_seqs 124 out of 1125
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 02:58:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034447.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034447hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 99.9 6.3E-22 1.4E-26 141.0 11.0 89 2-90 464-553 (1060)
2 PLN03218 maturation of RBCL 1; 99.9 2E-21 4.4E-26 138.4 11.1 88 3-90 677-765 (1060)
3 PLN03081 pentatricopeptide (PP 99.8 4.8E-21 1E-25 132.4 6.9 79 6-88 357-435 (697)
4 PF13041 PPR_2: PPR repeat fam 99.8 1.7E-20 3.7E-25 90.5 6.7 49 42-90 1-49 (50)
5 PF13041 PPR_2: PPR repeat fam 99.8 1.4E-20 3.1E-25 90.7 6.2 50 7-56 1-50 (50)
6 PLN03077 Protein ECB2; Provisi 99.8 1.3E-19 2.9E-24 127.5 10.1 86 6-91 551-637 (857)
7 PLN03081 pentatricopeptide (PP 99.8 8.6E-20 1.9E-24 126.2 8.9 86 6-91 388-474 (697)
8 PLN03077 Protein ECB2; Provisi 99.8 2.9E-18 6.2E-23 120.8 10.4 85 6-90 250-334 (857)
9 PF12854 PPR_1: PPR repeat 99.5 1.7E-14 3.7E-19 64.1 3.9 34 38-71 1-34 (34)
10 PF12854 PPR_1: PPR repeat 99.4 6.1E-13 1.3E-17 59.0 4.1 32 5-36 3-34 (34)
11 TIGR00756 PPR pentatricopeptid 99.2 3.9E-11 8.5E-16 52.9 4.4 33 46-78 2-34 (35)
12 TIGR00756 PPR pentatricopeptid 99.2 5.9E-11 1.3E-15 52.3 3.9 35 10-44 1-35 (35)
13 PF13812 PPR_3: Pentatricopept 99.2 6.6E-11 1.4E-15 52.1 4.1 33 45-77 2-34 (34)
14 PF13812 PPR_3: Pentatricopept 99.1 1E-10 2.2E-15 51.4 3.9 33 10-42 2-34 (34)
15 PF01535 PPR: PPR repeat; Int 99.0 4.1E-10 8.8E-15 48.4 3.1 29 46-74 2-30 (31)
16 PF08579 RPM2: Mitochondrial r 99.0 3.1E-08 6.8E-13 54.8 10.9 84 11-94 27-119 (120)
17 PF01535 PPR: PPR repeat; Int 99.0 1.1E-09 2.4E-14 47.0 3.2 31 10-40 1-31 (31)
18 KOG4422 Uncharacterized conser 99.0 8E-09 1.7E-13 68.5 8.4 81 6-90 239-323 (625)
19 PF06239 ECSIT: Evolutionarily 98.8 1.3E-07 2.8E-12 57.7 9.1 85 6-90 44-149 (228)
20 KOG4422 Uncharacterized conser 98.6 2.3E-07 5.1E-12 61.8 7.7 79 8-90 206-284 (625)
21 PF10037 MRP-S27: Mitochondria 98.6 4.5E-07 9.8E-12 60.5 8.6 81 10-90 104-184 (429)
22 PF12921 ATP13: Mitochondrial 98.4 1.4E-05 3.1E-10 45.2 10.5 81 8-88 1-97 (126)
23 KOG4318 Bicoid mRNA stability 98.3 3E-06 6.4E-11 60.5 7.5 81 6-89 201-281 (1088)
24 KOG4318 Bicoid mRNA stability 98.3 3.5E-07 7.6E-12 65.0 1.3 78 1-90 16-94 (1088)
25 PRK11788 tetratricopeptide rep 98.2 5.4E-05 1.2E-09 49.4 10.3 75 10-88 250-324 (389)
26 PRK11788 tetratricopeptide rep 98.1 0.00012 2.6E-09 47.8 10.4 77 10-88 215-291 (389)
27 PF06239 ECSIT: Evolutionarily 98.0 4.4E-05 9.6E-10 46.9 6.5 71 1-71 78-166 (228)
28 KOG3941 Intermediate in Toll s 97.9 0.00026 5.7E-09 45.5 9.3 85 6-90 64-169 (406)
29 PF08579 RPM2: Mitochondrial r 97.9 5.6E-05 1.2E-09 42.0 5.6 52 6-57 58-117 (120)
30 PF03704 BTAD: Bacterial trans 97.9 0.00035 7.6E-09 40.0 9.2 72 11-83 64-140 (146)
31 PF10037 MRP-S27: Mitochondria 97.8 0.00016 3.5E-09 48.6 7.4 87 6-92 63-152 (429)
32 PF13432 TPR_16: Tetratricopep 97.7 0.00072 1.6E-08 33.4 7.3 57 16-73 4-60 (65)
33 PF14559 TPR_19: Tetratricopep 97.6 0.00063 1.4E-08 33.8 6.5 63 20-85 2-64 (68)
34 TIGR02917 PEP_TPR_lipo putativ 97.5 0.0041 9E-08 43.9 10.9 62 10-72 670-731 (899)
35 PF13424 TPR_12: Tetratricopep 97.5 0.0021 4.5E-08 32.8 7.2 63 9-71 5-73 (78)
36 TIGR02917 PEP_TPR_lipo putativ 97.3 0.0023 4.9E-08 45.2 8.4 85 6-93 801-886 (899)
37 COG3629 DnrI DNA-binding trans 97.3 0.014 3.1E-07 37.4 10.6 78 10-88 154-236 (280)
38 PF13414 TPR_11: TPR repeat; P 97.2 0.0073 1.6E-07 29.9 7.9 64 8-72 2-66 (69)
39 PF12895 Apc3: Anaphase-promot 96.9 0.0048 1.1E-07 32.0 4.9 47 23-69 3-50 (84)
40 PF13762 MNE1: Mitochondrial s 96.9 0.034 7.4E-07 32.3 9.0 84 9-92 39-128 (145)
41 PF13371 TPR_9: Tetratricopept 96.7 0.021 4.5E-07 28.5 6.6 58 16-74 2-59 (73)
42 PRK12370 invasion protein regu 96.7 0.085 1.8E-06 36.8 11.2 65 8-73 337-401 (553)
43 PF13429 TPR_15: Tetratricopep 96.6 0.043 9.2E-07 34.7 8.8 80 7-88 108-189 (280)
44 TIGR02552 LcrH_SycD type III s 96.6 0.044 9.5E-07 30.6 9.2 65 9-74 17-81 (135)
45 PF12895 Apc3: Anaphase-promot 96.6 0.0099 2.2E-07 30.8 4.8 60 8-69 24-83 (84)
46 TIGR02552 LcrH_SycD type III s 96.5 0.052 1.1E-06 30.3 10.2 75 8-85 50-124 (135)
47 PRK15359 type III secretion sy 96.4 0.073 1.6E-06 30.6 9.6 64 8-72 57-120 (144)
48 KOG3081 Vesicle coat complex C 96.4 0.11 2.5E-06 33.3 9.4 84 8-93 168-256 (299)
49 PRK02603 photosystem I assembl 96.3 0.099 2.1E-06 30.8 8.8 66 8-73 34-101 (172)
50 PF04733 Coatomer_E: Coatomer 96.3 0.088 1.9E-06 33.9 8.7 67 24-92 182-249 (290)
51 TIGR02521 type_IV_pilW type IV 96.3 0.11 2.3E-06 30.9 11.1 62 10-72 32-93 (234)
52 cd00189 TPR Tetratricopeptide 96.2 0.052 1.1E-06 27.0 9.4 62 12-74 3-64 (100)
53 TIGR02521 type_IV_pilW type IV 96.2 0.12 2.5E-06 30.7 10.9 61 12-73 138-198 (234)
54 PF12921 ATP13: Mitochondrial 96.1 0.06 1.3E-06 30.5 6.7 53 6-58 49-102 (126)
55 TIGR00540 hemY_coli hemY prote 96.1 0.083 1.8E-06 35.4 8.3 60 11-70 337-396 (409)
56 KOG2003 TPR repeat-containing 96.1 0.16 3.6E-06 35.2 9.5 78 8-88 625-703 (840)
57 KOG3941 Intermediate in Toll s 96.1 0.033 7.2E-07 36.2 5.9 72 1-72 98-187 (406)
58 PF13429 TPR_15: Tetratricopep 96.0 0.033 7.2E-07 35.2 5.8 64 8-73 145-209 (280)
59 cd00189 TPR Tetratricopeptide 96.0 0.072 1.6E-06 26.5 7.6 65 8-73 33-97 (100)
60 PLN03088 SGT1, suppressor of 96.0 0.25 5.5E-06 32.7 10.5 66 8-74 35-100 (356)
61 PRK10747 putative protoheme IX 95.8 0.17 3.7E-06 33.9 8.7 61 16-77 160-220 (398)
62 PF13176 TPR_7: Tetratricopept 95.8 0.033 7.1E-07 24.3 3.8 26 46-71 1-26 (36)
63 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.26 5.7E-06 33.8 9.5 65 7-73 73-141 (453)
64 PRK10153 DNA-binding transcrip 95.7 0.35 7.7E-06 33.7 9.9 73 8-82 419-492 (517)
65 PRK10747 putative protoheme IX 95.7 0.21 4.5E-06 33.5 8.6 57 11-69 330-386 (398)
66 PRK15174 Vi polysaccharide exp 95.7 0.48 1E-05 33.9 10.8 59 12-71 113-171 (656)
67 PRK15359 type III secretion sy 95.5 0.21 4.6E-06 28.6 11.0 62 12-74 27-88 (144)
68 TIGR02795 tol_pal_ybgF tol-pal 95.5 0.17 3.8E-06 27.1 8.4 60 13-72 6-67 (119)
69 TIGR00990 3a0801s09 mitochondr 95.4 0.6 1.3E-05 33.0 10.9 58 12-70 402-459 (615)
70 COG3071 HemY Uncharacterized e 95.4 0.22 4.8E-06 33.4 7.8 62 10-73 329-390 (400)
71 TIGR02795 tol_pal_ybgF tol-pal 95.4 0.19 4.2E-06 26.9 9.6 65 10-74 40-106 (119)
72 PRK15174 Vi polysaccharide exp 95.3 0.68 1.5E-05 33.2 10.9 63 9-73 144-206 (656)
73 PF09295 ChAPs: ChAPs (Chs5p-A 95.2 0.22 4.8E-06 33.6 7.6 63 8-72 233-296 (395)
74 PF09976 TPR_21: Tetratricopep 95.2 0.22 4.9E-06 28.4 6.9 58 15-72 54-113 (145)
75 PRK09782 bacteriophage N4 rece 95.2 0.84 1.8E-05 34.4 11.1 67 6-73 606-672 (987)
76 TIGR00540 hemY_coli hemY prote 95.2 0.57 1.2E-05 31.4 10.5 62 15-77 159-220 (409)
77 PF12688 TPR_5: Tetratrico pep 95.2 0.28 6E-06 27.6 10.0 56 18-73 10-67 (120)
78 PRK11189 lipoprotein NlpI; Pro 94.9 0.6 1.3E-05 30.0 9.2 63 8-72 97-160 (296)
79 PF05843 Suf: Suppressor of fo 94.7 0.51 1.1E-05 30.2 8.0 76 10-87 2-78 (280)
80 PF13428 TPR_14: Tetratricopep 94.6 0.15 3.3E-06 23.1 4.2 29 46-74 3-31 (44)
81 PF03704 BTAD: Bacterial trans 94.6 0.12 2.6E-06 29.4 4.6 42 7-48 94-140 (146)
82 cd05804 StaR_like StaR_like; a 94.6 0.64 1.4E-05 30.1 8.5 63 9-71 148-213 (355)
83 PRK12370 invasion protein regu 94.5 1.1 2.3E-05 31.4 11.2 63 9-73 372-435 (553)
84 COG2956 Predicted N-acetylgluc 94.5 0.27 5.9E-06 32.6 6.3 60 16-76 114-173 (389)
85 PF13176 TPR_7: Tetratricopept 94.5 0.14 3E-06 22.2 3.7 26 11-36 1-26 (36)
86 PF10602 RPN7: 26S proteasome 94.3 0.63 1.4E-05 27.9 9.5 63 10-72 37-101 (177)
87 COG5010 TadD Flp pilus assembl 94.3 0.83 1.8E-05 29.1 10.3 65 8-73 99-163 (257)
88 TIGR00990 3a0801s09 mitochondr 94.3 1.3 2.8E-05 31.3 11.1 61 11-72 367-427 (615)
89 TIGR03302 OM_YfiO outer membra 94.2 0.74 1.6E-05 28.1 8.1 59 15-73 172-232 (235)
90 PF04733 Coatomer_E: Coatomer 94.1 0.97 2.1E-05 29.2 9.7 78 8-88 130-210 (290)
91 KOG1914 mRNA cleavage and poly 94.1 0.4 8.7E-06 33.8 6.7 59 10-69 367-426 (656)
92 PF04840 Vps16_C: Vps16, C-ter 94.0 0.7 1.5E-05 30.3 7.6 69 11-89 179-247 (319)
93 COG2956 Predicted N-acetylgluc 94.0 0.77 1.7E-05 30.5 7.7 58 16-73 221-278 (389)
94 PRK15179 Vi polysaccharide bio 94.0 1 2.2E-05 32.7 8.9 64 8-72 153-216 (694)
95 PF13374 TPR_10: Tetratricopep 93.9 0.24 5.2E-06 21.5 4.6 27 45-71 3-29 (42)
96 PF13929 mRNA_stabil: mRNA sta 93.9 1.1 2.4E-05 29.1 8.4 85 5-89 198-288 (292)
97 KOG1155 Anaphase-promoting com 93.8 1.1 2.3E-05 31.2 8.3 66 6-72 428-494 (559)
98 KOG4570 Uncharacterized conser 93.8 0.21 4.6E-06 33.0 4.8 50 24-73 115-164 (418)
99 PF13374 TPR_10: Tetratricopep 93.7 0.27 5.9E-06 21.4 4.4 29 9-37 2-30 (42)
100 PRK10370 formate-dependent nit 93.6 0.95 2.1E-05 27.5 8.7 46 26-72 127-172 (198)
101 PRK14574 hmsH outer membrane p 93.6 1.3 2.9E-05 32.8 9.1 60 14-73 297-356 (822)
102 CHL00033 ycf3 photosystem I as 93.6 0.83 1.8E-05 26.6 11.2 65 9-73 35-101 (168)
103 PF12569 NARP1: NMDA receptor- 93.5 1.8 3.8E-05 30.4 9.2 67 18-87 13-79 (517)
104 PF09205 DUF1955: Domain of un 93.5 0.88 1.9E-05 26.5 8.8 68 8-76 85-152 (161)
105 PRK11447 cellulose synthase su 93.4 1.9 4.2E-05 32.9 10.0 64 8-73 636-700 (1157)
106 COG5107 RNA14 Pre-mRNA 3'-end 93.3 0.94 2E-05 31.6 7.4 59 10-69 398-457 (660)
107 PRK10370 formate-dependent nit 93.3 1.1 2.4E-05 27.2 11.1 68 7-75 71-141 (198)
108 PRK10803 tol-pal system protei 93.2 1.2 2.6E-05 28.4 7.6 63 9-73 143-209 (263)
109 KOG2002 TPR-containing nuclear 93.1 0.22 4.8E-06 37.0 4.5 70 18-88 655-725 (1018)
110 PF11848 DUF3368: Domain of un 93.0 0.48 1E-05 22.1 5.0 32 56-87 14-45 (48)
111 PF10579 Rapsyn_N: Rapsyn N-te 93.0 0.72 1.6E-05 24.1 5.5 55 15-70 13-70 (80)
112 PRK14574 hmsH outer membrane p 92.8 0.97 2.1E-05 33.4 7.5 62 11-72 329-395 (822)
113 TIGR03504 FimV_Cterm FimV C-te 92.8 0.49 1.1E-05 21.8 4.3 25 50-74 5-29 (44)
114 PRK11447 cellulose synthase su 92.8 1.6 3.4E-05 33.4 8.6 65 8-73 602-666 (1157)
115 cd05804 StaR_like StaR_like; a 92.7 1.8 3.8E-05 28.1 10.4 62 11-73 116-177 (355)
116 cd00923 Cyt_c_Oxidase_Va Cytoc 92.7 0.93 2E-05 24.8 7.6 63 24-88 22-85 (103)
117 PRK11189 lipoprotein NlpI; Pro 92.7 1.8 3.8E-05 27.9 11.3 63 10-73 65-127 (296)
118 PF11846 DUF3366: Domain of un 92.5 1.4 3.1E-05 26.4 7.5 60 14-73 113-173 (193)
119 PRK09782 bacteriophage N4 rece 92.4 3.9 8.4E-05 31.1 10.9 52 20-73 520-571 (987)
120 PF13428 TPR_14: Tetratricopep 92.3 0.54 1.2E-05 21.2 4.1 28 11-38 3-30 (44)
121 PRK10049 pgaA outer membrane p 92.3 3.4 7.3E-05 30.3 11.4 59 12-72 86-144 (765)
122 PF02284 COX5A: Cytochrome c o 92.3 1.1 2.4E-05 24.7 6.0 71 15-87 15-87 (108)
123 PLN03088 SGT1, suppressor of 92.3 2.3 4.9E-05 28.2 9.6 70 17-88 10-79 (356)
124 PF11848 DUF3368: Domain of un 92.2 0.65 1.4E-05 21.7 5.2 37 16-52 9-45 (48)
125 COG5010 TadD Flp pilus assembl 92.1 2.1 4.5E-05 27.4 10.1 79 6-86 131-210 (257)
126 KOG1914 mRNA cleavage and poly 92.0 2.4 5.2E-05 30.2 8.1 69 25-93 347-416 (656)
127 TIGR02561 HrpB1_HrpK type III 92.0 1.6 3.4E-05 25.7 8.3 53 21-75 22-75 (153)
128 PRK10049 pgaA outer membrane p 91.9 3.8 8.2E-05 30.0 11.4 65 8-73 48-112 (765)
129 PF14559 TPR_19: Tetratricopep 91.9 0.8 1.7E-05 22.2 4.9 42 8-51 24-65 (68)
130 PF02284 COX5A: Cytochrome c o 91.9 1.3 2.8E-05 24.5 9.8 46 6-52 42-87 (108)
131 KOG2053 Mitochondrial inherita 91.7 3.2 7E-05 31.0 8.7 60 13-73 45-106 (932)
132 PF13512 TPR_18: Tetratricopep 91.7 1.6 3.5E-05 25.4 8.0 80 7-88 9-91 (142)
133 PRK15363 pathogenicity island 91.7 1.8 3.8E-05 25.7 8.6 56 17-74 43-99 (157)
134 KOG3785 Uncharacterized conser 91.7 0.8 1.7E-05 31.0 5.4 56 15-70 399-454 (557)
135 COG4783 Putative Zn-dependent 91.4 3.6 7.7E-05 28.7 10.3 80 8-90 339-419 (484)
136 PF09295 ChAPs: ChAPs (Chs5p-A 91.4 2.7 5.9E-05 28.6 7.8 56 13-72 173-228 (395)
137 PF05843 Suf: Suppressor of fo 91.3 2.6 5.6E-05 27.0 8.6 50 23-73 50-99 (280)
138 KOG1125 TPR repeat-containing 91.1 1.9 4.2E-05 30.5 7.0 66 6-73 427-493 (579)
139 KOG2796 Uncharacterized conser 91.1 3 6.5E-05 27.3 7.3 77 11-87 179-255 (366)
140 KOG2076 RNA polymerase III tra 91.0 2.7 5.9E-05 31.3 7.9 66 8-73 413-478 (895)
141 KOG1129 TPR repeat-containing 91.0 3.5 7.5E-05 27.8 7.8 31 6-36 253-283 (478)
142 cd00923 Cyt_c_Oxidase_Va Cytoc 90.9 1.6 3.4E-05 23.9 5.2 45 6-52 39-84 (103)
143 TIGR02508 type_III_yscG type I 90.9 1.7 3.6E-05 24.0 5.7 64 14-84 44-107 (115)
144 PF14689 SPOB_a: Sensor_kinase 90.9 1.1 2.4E-05 22.1 5.6 48 24-73 5-52 (62)
145 TIGR03302 OM_YfiO outer membra 90.6 2.6 5.7E-05 25.7 10.1 67 7-73 31-99 (235)
146 COG5107 RNA14 Pre-mRNA 3'-end 90.4 0.57 1.2E-05 32.6 3.9 51 43-93 396-447 (660)
147 CHL00033 ycf3 photosystem I as 90.4 2.3 5E-05 24.7 8.4 61 9-70 72-139 (168)
148 KOG1173 Anaphase-promoting com 90.3 5.1 0.00011 28.6 9.2 77 9-88 455-531 (611)
149 PF07721 TPR_4: Tetratricopept 90.3 0.68 1.5E-05 18.4 3.2 20 49-68 6-25 (26)
150 KOG1840 Kinesin light chain [C 90.2 3.6 7.9E-05 28.9 7.7 63 10-72 200-269 (508)
151 PRK10564 maltose regulon perip 90.0 1.4 3E-05 28.9 5.2 47 41-87 253-300 (303)
152 KOG1915 Cell cycle control pro 89.6 5.2 0.00011 28.3 7.9 65 6-72 171-235 (677)
153 PF09613 HrpB1_HrpK: Bacterial 89.3 3.1 6.8E-05 24.7 8.8 56 17-74 18-74 (160)
154 KOG1840 Kinesin light chain [C 89.1 6.1 0.00013 27.8 8.3 58 13-70 245-309 (508)
155 PF13174 TPR_6: Tetratricopept 89.1 0.69 1.5E-05 18.9 2.5 24 50-73 6-29 (33)
156 PF11663 Toxin_YhaV: Toxin wit 89.1 0.51 1.1E-05 27.2 2.5 31 57-89 108-138 (140)
157 KOG1129 TPR repeat-containing 89.0 5.3 0.00012 27.0 7.9 67 13-83 227-293 (478)
158 KOG4626 O-linked N-acetylgluco 89.0 4.9 0.00011 29.4 7.6 63 8-72 115-178 (966)
159 PF13281 DUF4071: Domain of un 88.9 5.5 0.00012 27.0 9.8 76 14-89 146-227 (374)
160 KOG4567 GTPase-activating prot 88.4 2.5 5.5E-05 28.0 5.6 58 29-91 263-320 (370)
161 PF09976 TPR_21: Tetratricopep 88.3 3.2 7E-05 23.6 9.8 68 9-77 12-81 (145)
162 PF14938 SNAP: Soluble NSF att 88.3 4.9 0.00011 25.7 10.2 84 10-93 156-249 (282)
163 PF04184 ST7: ST7 protein; In 88.1 7.4 0.00016 27.5 8.5 67 20-86 270-338 (539)
164 KOG3616 Selective LIM binding 87.9 1.3 2.9E-05 32.9 4.5 50 12-70 768-817 (1636)
165 COG3071 HemY Uncharacterized e 87.8 6.7 0.00015 26.7 9.4 74 6-80 150-223 (400)
166 KOG1915 Cell cycle control pro 87.8 3.4 7.4E-05 29.2 6.1 58 22-83 154-211 (677)
167 PF13525 YfiO: Outer membrane 87.7 4.4 9.6E-05 24.6 9.1 57 17-73 13-71 (203)
168 PF00515 TPR_1: Tetratricopept 87.6 1.3 2.9E-05 18.3 4.6 28 45-72 2-29 (34)
169 PF11663 Toxin_YhaV: Toxin wit 87.5 0.67 1.5E-05 26.8 2.4 31 22-54 108-138 (140)
170 PF13170 DUF4003: Protein of u 87.4 3.9 8.4E-05 26.7 6.1 80 9-88 60-150 (297)
171 KOG0553 TPR repeat-containing 87.3 6.3 0.00014 25.9 9.1 78 7-88 113-191 (304)
172 PF13424 TPR_12: Tetratricopep 87.0 2.6 5.6E-05 21.0 4.6 29 44-72 5-33 (78)
173 PRK15331 chaperone protein Sic 86.8 4.6 9.9E-05 24.2 5.7 51 20-71 48-98 (165)
174 PRK15179 Vi polysaccharide bio 86.6 11 0.00023 27.7 10.9 65 8-74 119-184 (694)
175 PF13431 TPR_17: Tetratricopep 86.4 1.1 2.3E-05 19.2 2.3 22 43-64 12-33 (34)
176 PF04840 Vps16_C: Vps16, C-ter 86.4 3.5 7.5E-05 27.2 5.5 58 6-69 205-262 (319)
177 KOG2002 TPR-containing nuclear 86.3 6.3 0.00014 29.9 7.1 79 10-88 681-760 (1018)
178 PRK10564 maltose regulon perip 86.3 3.3 7.2E-05 27.1 5.3 44 6-49 253-297 (303)
179 COG3629 DnrI DNA-binding trans 85.6 6 0.00013 25.7 6.1 47 8-54 186-237 (280)
180 KOG0553 TPR repeat-containing 85.5 8.1 0.00018 25.4 7.2 71 19-92 91-163 (304)
181 KOG1155 Anaphase-promoting com 85.1 11 0.00024 26.6 8.0 70 17-86 235-306 (559)
182 PRK10866 outer membrane biogen 85.1 7.3 0.00016 24.5 9.2 56 17-73 40-98 (243)
183 PF12926 MOZART2: Mitotic-spin 85.1 4.2 9E-05 21.7 8.3 66 6-73 7-72 (88)
184 KOG4077 Cytochrome c oxidase, 85.1 5.5 0.00012 23.0 7.2 63 24-87 64-126 (149)
185 PRK14720 transcript cleavage f 85.0 14 0.0003 28.1 8.4 58 13-72 120-177 (906)
186 PF14840 DNA_pol3_delt_C: Proc 84.4 1.8 3.8E-05 24.5 3.1 27 22-48 10-36 (125)
187 COG4783 Putative Zn-dependent 84.3 12 0.00026 26.3 8.1 63 6-69 370-433 (484)
188 COG4455 ImpE Protein of avirul 84.3 8.4 0.00018 24.5 8.1 77 11-88 3-81 (273)
189 PF13762 MNE1: Mitochondrial s 84.3 5.2 0.00011 23.4 5.0 52 6-57 76-128 (145)
190 KOG1128 Uncharacterized conser 83.8 3.2 7E-05 30.4 4.7 66 6-72 549-615 (777)
191 KOG2003 TPR repeat-containing 83.3 14 0.0003 26.2 8.1 81 8-91 591-671 (840)
192 COG5108 RPO41 Mitochondrial DN 82.7 18 0.00038 27.0 8.4 75 14-88 33-112 (1117)
193 PRK15363 pathogenicity island 82.6 7.9 0.00017 23.0 8.2 61 12-73 72-132 (157)
194 KOG4340 Uncharacterized conser 82.5 5.9 0.00013 26.5 5.2 65 9-75 144-209 (459)
195 KOG2053 Mitochondrial inherita 82.0 20 0.00043 27.2 8.8 82 7-91 75-156 (932)
196 PF07719 TPR_2: Tetratricopept 81.9 2.7 5.9E-05 17.1 4.6 27 46-72 3-29 (34)
197 PF11846 DUF3366: Domain of un 81.7 5 0.00011 24.0 4.5 33 6-38 141-173 (193)
198 PF02847 MA3: MA3 domain; Int 81.6 6.5 0.00014 21.3 6.5 63 13-77 6-70 (113)
199 PF14938 SNAP: Soluble NSF att 81.6 11 0.00024 24.0 7.3 64 11-74 116-185 (282)
200 PF00637 Clathrin: Region in C 81.1 0.81 1.7E-05 25.9 0.9 59 6-71 39-97 (143)
201 PRK10803 tol-pal system protei 81.0 12 0.00026 24.0 8.5 63 11-73 182-246 (263)
202 KOG0985 Vesicle coat protein c 80.4 26 0.00057 27.5 8.5 74 10-91 1105-1178(1666)
203 KOG1070 rRNA processing protei 80.2 13 0.00028 29.7 6.9 58 11-69 1532-1589(1710)
204 KOG4570 Uncharacterized conser 80.2 3 6.5E-05 27.9 3.3 32 6-37 132-163 (418)
205 KOG1070 rRNA processing protei 80.1 16 0.00034 29.3 7.3 62 10-73 1498-1559(1710)
206 PRK09857 putative transposase; 79.8 14 0.00031 24.0 6.6 67 12-79 209-275 (292)
207 KOG1128 Uncharacterized conser 79.8 17 0.00037 27.0 7.0 62 15-87 404-465 (777)
208 PF02607 B12-binding_2: B12 bi 79.8 5.4 0.00012 20.1 3.7 39 21-59 13-51 (79)
209 KOG0547 Translocase of outer m 79.4 15 0.00032 26.2 6.5 64 8-72 427-490 (606)
210 PF00637 Clathrin: Region in C 79.2 0.37 8.1E-06 27.3 -0.9 54 15-68 13-66 (143)
211 PF08311 Mad3_BUB1_I: Mad3/BUB 79.0 9.4 0.0002 21.5 5.9 44 26-69 80-124 (126)
212 KOG2047 mRNA splicing factor [ 78.9 8.2 0.00018 28.3 5.3 44 10-55 249-292 (835)
213 cd07153 Fur_like Ferric uptake 78.7 8.6 0.00019 20.9 4.8 47 14-60 5-51 (116)
214 PF10366 Vps39_1: Vacuolar sor 78.6 7.9 0.00017 21.3 4.3 26 12-37 42-67 (108)
215 COG5210 GTPase-activating prot 78.3 20 0.00044 25.0 7.3 62 27-88 360-421 (496)
216 PF13170 DUF4003: Protein of u 78.1 13 0.00029 24.2 5.8 76 7-84 139-222 (297)
217 PF07443 HARP: HepA-related pr 77.9 0.79 1.7E-05 22.3 0.2 34 23-56 6-39 (55)
218 KOG1126 DNA-binding cell divis 77.8 8.2 0.00018 27.9 5.0 58 15-72 359-449 (638)
219 KOG3616 Selective LIM binding 77.7 7.6 0.00016 29.2 4.9 55 11-67 793-847 (1636)
220 PF13181 TPR_8: Tetratricopept 77.6 4.1 8.9E-05 16.6 4.4 26 46-71 3-28 (34)
221 smart00028 TPR Tetratricopepti 77.5 3.3 7.2E-05 15.6 3.4 27 46-72 3-29 (34)
222 PRK02603 photosystem I assembl 76.8 12 0.00027 21.8 9.0 62 9-72 72-148 (172)
223 COG2405 Predicted nucleic acid 76.7 8.5 0.00018 22.6 4.1 45 43-88 109-153 (157)
224 smart00164 TBC Domain in Tre-2 76.7 13 0.00029 22.1 5.9 45 30-74 152-197 (199)
225 PF07035 Mic1: Colon cancer-as 76.0 14 0.00031 22.1 6.9 45 6-54 26-70 (167)
226 COG3063 PilF Tfp pilus assembl 75.9 17 0.00037 23.2 5.6 64 8-73 68-132 (250)
227 PF10366 Vps39_1: Vacuolar sor 75.8 11 0.00024 20.7 5.7 28 45-72 40-67 (108)
228 KOG0985 Vesicle coat protein c 75.6 21 0.00045 28.0 6.7 58 7-66 1131-1188(1666)
229 COG3947 Response regulator con 75.6 21 0.00045 23.8 8.3 71 11-82 281-356 (361)
230 KOG0547 Translocase of outer m 75.4 7.7 0.00017 27.5 4.3 46 18-65 124-170 (606)
231 PF01475 FUR: Ferric uptake re 75.0 10 0.00023 20.8 4.2 46 13-58 11-56 (120)
232 smart00299 CLH Clathrin heavy 73.7 14 0.00029 20.7 5.4 55 12-68 10-64 (140)
233 smart00299 CLH Clathrin heavy 73.5 14 0.0003 20.7 8.0 59 7-72 39-97 (140)
234 PF13512 TPR_18: Tetratricopep 73.5 16 0.00034 21.3 5.4 48 8-56 46-94 (142)
235 KOG1538 Uncharacterized conser 73.5 25 0.00053 26.2 6.5 60 7-69 596-657 (1081)
236 COG3063 PilF Tfp pilus assembl 73.3 21 0.00046 22.8 8.8 63 10-73 36-98 (250)
237 KOG0548 Molecular co-chaperone 72.5 19 0.0004 25.7 5.6 47 19-66 368-414 (539)
238 PF14669 Asp_Glu_race_2: Putat 72.5 21 0.00045 22.3 5.5 57 13-69 136-206 (233)
239 cd00280 TRFH Telomeric Repeat 72.4 18 0.00038 22.3 4.9 43 14-59 116-158 (200)
240 PF12569 NARP1: NMDA receptor- 72.3 32 0.0007 24.4 10.1 67 6-74 189-258 (517)
241 PF03745 DUF309: Domain of unk 71.9 10 0.00023 18.6 6.5 49 19-67 9-62 (62)
242 PF10602 RPN7: 26S proteasome 71.9 15 0.00033 21.9 4.7 34 44-77 36-69 (177)
243 PF11207 DUF2989: Protein of u 70.9 22 0.00049 22.0 7.1 71 18-90 116-189 (203)
244 COG4700 Uncharacterized protei 70.9 23 0.0005 22.2 8.2 68 6-73 86-153 (251)
245 PF09613 HrpB1_HrpK: Bacterial 70.3 20 0.00044 21.3 7.8 61 19-81 54-114 (160)
246 KOG4626 O-linked N-acetylgluco 69.9 43 0.00094 24.9 8.0 29 44-72 456-484 (966)
247 PF00566 RabGAP-TBC: Rab-GTPas 69.7 13 0.00028 22.2 4.1 46 29-75 149-194 (214)
248 KOG3081 Vesicle coat complex C 69.6 29 0.00062 22.8 8.4 68 6-74 204-272 (299)
249 COG2405 Predicted nucleic acid 68.7 19 0.00042 21.1 4.3 37 16-52 116-152 (157)
250 KOG4162 Predicted calmodulin-b 68.5 48 0.001 24.9 7.6 65 6-72 477-541 (799)
251 COG3898 Uncharacterized membra 68.5 37 0.00081 23.7 6.8 69 11-79 120-224 (531)
252 PF14840 DNA_pol3_delt_C: Proc 68.5 11 0.00024 21.3 3.4 25 58-82 11-35 (125)
253 KOG1126 DNA-binding cell divis 68.4 44 0.00096 24.5 8.8 61 11-72 525-585 (638)
254 COG4235 Cytochrome c biogenesi 67.9 31 0.00068 22.6 8.2 61 25-88 209-269 (287)
255 COG4105 ComL DNA uptake lipopr 67.7 30 0.00065 22.3 8.5 80 7-88 33-115 (254)
256 PF12688 TPR_5: Tetratrico pep 67.2 20 0.00044 20.1 9.2 74 11-90 40-117 (120)
257 KOG4555 TPR repeat-containing 66.8 24 0.00052 20.8 7.8 54 18-72 52-105 (175)
258 cd00280 TRFH Telomeric Repeat 66.2 29 0.00062 21.5 6.4 49 25-73 85-140 (200)
259 KOG4340 Uncharacterized conser 66.1 38 0.00082 22.9 6.3 62 9-72 10-72 (459)
260 KOG3060 Uncharacterized conser 66.0 34 0.00074 22.3 8.9 70 11-83 54-124 (289)
261 PF11126 Phage_DsbA: Transcrip 65.9 16 0.00035 18.5 3.6 16 77-92 32-47 (69)
262 smart00804 TAP_C C-terminal do 65.8 15 0.00033 18.2 3.6 21 57-77 38-58 (63)
263 PF07163 Pex26: Pex26 protein; 65.2 37 0.00081 22.4 6.0 53 15-67 124-181 (309)
264 PF02840 Prp18: Prp18 domain; 65.1 26 0.00056 20.6 5.8 45 27-71 42-86 (144)
265 PRK11639 zinc uptake transcrip 65.0 19 0.00042 21.4 4.1 18 58-75 39-56 (169)
266 TIGR02508 type_III_yscG type I 64.9 22 0.00048 19.8 5.1 58 25-87 21-78 (115)
267 TIGR03581 EF_0839 conserved hy 64.8 30 0.00064 21.9 4.9 64 8-71 162-235 (236)
268 PF09477 Type_III_YscG: Bacter 64.2 24 0.00051 19.8 6.4 63 14-83 45-107 (116)
269 PF09205 DUF1955: Domain of un 64.2 27 0.00058 20.6 4.3 37 5-41 116-152 (161)
270 smart00777 Mad3_BUB1_I Mad3/BU 63.4 26 0.00056 19.9 5.0 40 28-67 82-122 (125)
271 PF04184 ST7: ST7 protein; In 63.1 46 0.001 23.8 6.0 43 46-88 261-304 (539)
272 KOG0548 Molecular co-chaperone 62.9 17 0.00037 25.8 3.9 60 8-69 35-95 (539)
273 PRK14956 DNA polymerase III su 62.4 53 0.0012 23.3 8.3 61 22-82 213-286 (484)
274 PF07079 DUF1347: Protein of u 62.1 54 0.0012 23.3 7.5 67 21-87 91-175 (549)
275 PF10963 DUF2765: Protein of u 59.8 18 0.0004 19.1 3.0 31 40-70 12-42 (83)
276 PF09797 NatB_MDM20: N-acetylt 59.8 20 0.00044 23.8 3.9 70 14-84 185-257 (365)
277 PF07079 DUF1347: Protein of u 59.2 31 0.00066 24.5 4.6 48 10-57 129-180 (549)
278 PF07575 Nucleopor_Nup85: Nup8 58.5 26 0.00057 24.9 4.4 77 8-86 404-480 (566)
279 PF13281 DUF4071: Domain of un 58.1 58 0.0012 22.3 7.2 53 18-70 188-252 (374)
280 KOG2223 Uncharacterized conser 58.0 27 0.00057 24.6 4.1 46 29-74 459-504 (586)
281 PF09454 Vps23_core: Vps23 cor 57.7 23 0.00051 17.6 4.9 50 6-56 5-54 (65)
282 PF02184 HAT: HAT (Half-A-TPR) 57.6 16 0.00034 15.7 2.6 23 59-83 2-24 (32)
283 cd08819 CARD_MDA5_2 Caspase ac 56.8 29 0.00064 18.5 6.5 58 28-91 21-78 (88)
284 COG4649 Uncharacterized protei 56.7 45 0.00098 20.6 6.2 58 21-78 144-201 (221)
285 KOG1166 Mitotic checkpoint ser 56.4 58 0.0013 25.2 5.9 58 21-78 90-148 (974)
286 KOG1127 TPR repeat-containing 55.2 77 0.0017 24.9 6.3 61 8-71 595-657 (1238)
287 smart00386 HAT HAT (Half-A-TPR 54.9 14 0.00031 14.4 4.0 16 58-73 1-16 (33)
288 PRK04841 transcriptional regul 53.9 91 0.002 23.3 8.3 62 11-72 493-559 (903)
289 PF09119 SicP-binding: SicP bi 53.5 33 0.00071 18.1 3.9 34 42-75 35-68 (81)
290 KOG4162 Predicted calmodulin-b 53.3 97 0.0021 23.4 7.6 66 6-72 320-385 (799)
291 PF14044 NETI: NETI protein 52.8 14 0.0003 18.0 1.7 16 62-77 9-24 (57)
292 TIGR02328 conserved hypothetic 52.7 14 0.00031 20.8 1.9 19 27-45 53-71 (120)
293 KOG2908 26S proteasome regulat 52.5 72 0.0016 21.7 8.0 68 14-81 80-157 (380)
294 TIGR03236 dnd_assoc_1 dnd syst 51.9 67 0.0015 21.9 5.2 41 21-61 308-348 (363)
295 TIGR02561 HrpB1_HrpK type III 51.6 50 0.0011 19.6 7.2 35 19-56 54-88 (153)
296 KOG4077 Cytochrome c oxidase, 51.3 48 0.001 19.3 5.7 46 6-52 81-126 (149)
297 KOG2058 Ypt/Rab GTPase activat 51.2 83 0.0018 22.0 5.8 72 7-78 315-390 (436)
298 PF13929 mRNA_stabil: mRNA sta 51.2 69 0.0015 21.1 8.9 85 8-92 163-252 (292)
299 COG1729 Uncharacterized protei 50.9 66 0.0014 20.9 7.4 62 9-73 142-207 (262)
300 PF09670 Cas_Cas02710: CRISPR- 50.9 76 0.0017 21.5 8.5 54 19-73 141-198 (379)
301 PF09797 NatB_MDM20: N-acetylt 50.7 73 0.0016 21.2 7.1 61 8-69 216-277 (365)
302 KOG3785 Uncharacterized conser 49.8 86 0.0019 21.8 7.4 59 16-74 29-87 (557)
303 PF08542 Rep_fac_C: Replicatio 49.7 36 0.00078 17.4 4.7 49 7-57 3-51 (89)
304 PF03943 TAP_C: TAP C-terminal 49.1 8.6 0.00019 18.2 0.6 21 57-77 26-46 (51)
305 KOG1538 Uncharacterized conser 48.8 32 0.00069 25.7 3.5 59 14-74 778-847 (1081)
306 PF07304 SRA1: Steroid recepto 48.5 56 0.0012 19.3 5.2 44 31-74 77-120 (157)
307 KOG2047 mRNA splicing factor [ 48.2 1.2E+02 0.0025 22.9 7.9 61 11-71 389-452 (835)
308 KOG1127 TPR repeat-containing 47.9 37 0.00081 26.5 3.9 30 43-72 595-624 (1238)
309 COG3898 Uncharacterized membra 47.5 98 0.0021 21.8 7.2 68 11-78 190-297 (531)
310 PRK14958 DNA polymerase III su 47.0 1E+02 0.0022 21.9 9.7 59 22-81 211-282 (509)
311 COG0735 Fur Fe2+/Zn2+ uptake r 46.6 57 0.0012 18.9 4.6 48 29-77 6-53 (145)
312 KOG2280 Vacuolar assembly/sort 46.3 74 0.0016 24.0 5.0 63 11-77 686-749 (829)
313 PRK14951 DNA polymerase III su 45.4 1.2E+02 0.0026 22.3 8.4 57 22-79 216-285 (618)
314 PF09397 Ftsk_gamma: Ftsk gamm 44.4 38 0.00083 16.9 2.6 18 59-76 33-50 (65)
315 PRK07452 DNA polymerase III su 44.1 89 0.0019 20.3 5.0 34 45-80 202-235 (326)
316 PF12862 Apc5: Anaphase-promot 43.8 49 0.0011 17.3 7.3 54 19-72 8-69 (94)
317 PRK10866 outer membrane biogen 43.4 83 0.0018 19.8 7.8 59 10-72 145-203 (243)
318 PF07875 Coat_F: Coat F domain 43.3 40 0.00086 16.4 2.6 19 59-77 43-61 (64)
319 KOG0495 HAT repeat protein [RN 43.3 1.4E+02 0.0031 22.5 7.2 62 8-71 617-678 (913)
320 COG5210 GTPase-activating prot 43.1 82 0.0018 22.1 4.9 49 6-54 374-422 (496)
321 COG3294 HD supefamily hydrolas 42.9 22 0.00047 22.7 1.8 21 61-81 67-87 (269)
322 cd08315 Death_TRAILR_DR4_DR5 D 42.8 55 0.0012 17.6 3.8 49 25-75 47-95 (96)
323 PF03013 Pyr_excise: Pyrimidin 42.2 20 0.00044 20.5 1.6 27 27-53 64-90 (130)
324 PF04910 Tcf25: Transcriptiona 42.2 1.1E+02 0.0023 20.7 8.5 84 8-92 99-192 (360)
325 PF09435 DUF2015: Fungal prote 42.1 42 0.0009 19.3 2.7 21 59-79 100-122 (128)
326 PF14744 WASH-7_mid: WASH comp 41.7 30 0.00065 23.4 2.4 28 59-86 281-308 (350)
327 PF10300 DUF3808: Protein of u 41.6 1.2E+02 0.0026 21.2 8.1 76 7-82 264-344 (468)
328 PF12816 Vps8: Golgi CORVET co 41.5 56 0.0012 20.0 3.5 51 6-61 19-69 (196)
329 PF12169 DNA_pol3_gamma3: DNA 41.3 66 0.0014 18.1 4.2 23 56-78 26-48 (143)
330 PF04053 Coatomer_WDAD: Coatom 40.9 1.2E+02 0.0027 21.1 7.9 57 7-72 345-401 (443)
331 KOG2396 HAT (Half-A-TPR) repea 40.6 1.4E+02 0.003 21.6 7.7 65 8-73 104-169 (568)
332 PF04124 Dor1: Dor1-like famil 40.2 51 0.0011 21.9 3.4 26 47-72 109-134 (338)
333 smart00843 Ftsk_gamma This dom 40.2 43 0.00092 16.7 2.3 18 59-76 32-49 (63)
334 TIGR02531 yecD_yerC TrpR-relat 40.2 60 0.0013 17.2 3.8 25 46-70 4-28 (88)
335 PF00244 14-3-3: 14-3-3 protei 40.2 95 0.0021 19.6 6.4 58 15-72 7-65 (236)
336 PF12554 MOZART1: Mitotic-spin 39.7 45 0.00097 15.7 3.3 24 55-78 15-38 (48)
337 PRK14700 recombination factor 39.7 1E+02 0.0022 20.5 4.6 36 46-82 126-164 (300)
338 KOG4567 GTPase-activating prot 39.6 1.2E+02 0.0026 20.6 5.7 47 6-57 275-321 (370)
339 TIGR01529 argR_whole arginine 39.5 78 0.0017 18.4 3.9 40 15-54 6-45 (146)
340 PF07864 DUF1651: Protein of u 39.4 38 0.00083 17.2 2.2 19 59-77 51-69 (75)
341 smart00544 MA3 Domain in DAP-5 39.3 64 0.0014 17.3 9.3 62 12-75 5-68 (113)
342 PRK08691 DNA polymerase III su 39.2 1.7E+02 0.0036 22.1 8.9 57 22-79 211-280 (709)
343 PLN03025 replication factor C 39.1 1.1E+02 0.0024 20.0 9.0 72 8-82 179-262 (319)
344 COG1899 DYS1 Deoxyhypusine syn 39.1 32 0.00069 22.9 2.2 29 10-38 20-53 (318)
345 KOG0495 HAT repeat protein [RN 39.0 1.7E+02 0.0037 22.2 7.1 68 14-82 411-482 (913)
346 PRK14963 DNA polymerase III su 38.8 1.4E+02 0.0031 21.2 8.7 57 22-79 208-276 (504)
347 TIGR02710 CRISPR-associated pr 38.5 1.3E+02 0.0027 20.8 5.0 26 19-44 140-165 (380)
348 COG3118 Thioredoxin domain-con 38.4 1.2E+02 0.0026 20.2 5.4 56 18-74 143-198 (304)
349 PHA02599 dsbA double-stranded 38.2 66 0.0014 17.2 4.2 19 74-92 51-69 (91)
350 PF04269 DUF440: Protein of un 38.2 62 0.0013 17.9 2.9 25 25-49 10-35 (103)
351 PRK04841 transcriptional regul 37.9 1.7E+02 0.0037 21.9 8.4 62 11-72 575-640 (903)
352 COG2987 HutU Urocanate hydrata 37.7 14 0.0003 26.0 0.5 43 23-65 239-286 (561)
353 KOG2058 Ypt/Rab GTPase activat 37.7 57 0.0012 22.8 3.3 46 31-76 304-349 (436)
354 PF06252 DUF1018: Protein of u 37.3 75 0.0016 17.6 4.4 34 8-41 2-40 (119)
355 COG4003 Uncharacterized protei 37.2 69 0.0015 17.1 3.5 27 14-40 36-62 (98)
356 TIGR02710 CRISPR-associated pr 37.1 1.4E+02 0.003 20.6 6.9 30 52-81 138-167 (380)
357 PF09373 PMBR: Pseudomurein-bi 36.7 34 0.00074 14.4 1.5 18 63-80 14-31 (33)
358 KOG0991 Replication factor C, 36.0 1.3E+02 0.0027 19.8 5.7 35 7-42 237-271 (333)
359 PF14162 YozD: YozD-like prote 35.9 56 0.0012 15.7 2.6 18 63-80 14-31 (57)
360 PF12000 Glyco_trans_4_3: Gkyc 35.8 49 0.0011 19.9 2.5 22 59-80 49-70 (171)
361 PF09868 DUF2095: Uncharacteri 35.7 87 0.0019 17.8 3.4 27 14-40 66-92 (128)
362 smart00535 RIBOc Ribonuclease 35.2 80 0.0017 17.3 4.3 31 42-72 93-123 (129)
363 KOG2280 Vacuolar assembly/sort 34.9 1.5E+02 0.0032 22.6 5.1 49 9-66 744-792 (829)
364 COG3825 Uncharacterized protei 34.7 1.5E+02 0.0032 20.1 5.6 57 30-87 4-60 (393)
365 PF02259 FAT: FAT domain; Int 34.6 1.3E+02 0.0028 19.4 8.1 66 7-72 144-212 (352)
366 PRK07914 hypothetical protein; 34.4 83 0.0018 20.6 3.7 27 55-81 206-232 (320)
367 PF09197 Rap1-DNA-bind: Rap1, 34.2 87 0.0019 17.4 4.0 52 29-80 49-100 (105)
368 KOG1125 TPR repeat-containing 34.1 96 0.0021 22.5 4.0 61 6-69 460-523 (579)
369 PF08986 DUF1889: Domain of un 33.9 85 0.0019 17.2 4.5 53 25-77 25-80 (119)
370 PLN03098 LPA1 LOW PSII ACCUMUL 33.3 1.8E+02 0.0038 20.6 6.6 33 42-74 73-105 (453)
371 PRK12798 chemotaxis protein; R 33.2 1.7E+02 0.0037 20.5 5.3 50 22-71 125-175 (421)
372 cd08320 Pyrin_NALPs Pyrin deat 33.2 37 0.00079 17.9 1.6 27 46-72 47-73 (86)
373 PF08967 DUF1884: Domain of un 33.0 60 0.0013 17.2 2.3 22 26-47 12-33 (85)
374 PRK10153 DNA-binding transcrip 32.6 1.9E+02 0.004 20.7 8.9 46 41-88 417-462 (517)
375 COG0320 LipA Lipoate synthase 32.6 45 0.00097 22.0 2.1 50 23-76 194-243 (306)
376 PF04097 Nic96: Nup93/Nic96; 32.0 1.9E+02 0.0041 21.1 5.3 60 14-74 116-182 (613)
377 PF04348 LppC: LppC putative l 31.9 15 0.00033 26.0 0.0 62 14-75 29-92 (536)
378 cd08304 DD_superfamily The Dea 31.7 75 0.0016 15.8 3.6 13 62-74 34-46 (69)
379 PF13963 Transpos_assoc: Trans 31.6 17 0.00037 18.6 0.1 25 23-47 48-72 (77)
380 smart00638 LPD_N Lipoprotein N 31.5 1.9E+02 0.0042 20.6 10.1 79 9-88 340-427 (574)
381 COG1327 Predicted transcriptio 31.4 1.2E+02 0.0026 18.1 4.7 34 42-75 119-152 (156)
382 COG1466 HolA DNA polymerase II 31.3 97 0.0021 20.5 3.6 27 54-80 218-244 (334)
383 KOG1174 Anaphase-promoting com 31.2 2E+02 0.0043 20.6 7.1 50 18-69 343-393 (564)
384 KOG2297 Predicted translation 31.2 71 0.0015 21.6 2.9 22 43-64 320-341 (412)
385 smart00165 UBA Ubiquitin assoc 30.9 52 0.0011 13.8 4.6 32 31-66 4-35 (37)
386 TIGR01228 hutU urocanate hydra 30.9 19 0.00042 25.5 0.3 44 23-66 230-278 (545)
387 cd08790 DED_DEDD Death Effecto 30.5 98 0.0021 16.9 2.9 18 58-75 38-55 (97)
388 KOG2076 RNA polymerase III tra 30.4 2.6E+02 0.0056 21.7 7.6 65 25-89 393-459 (895)
389 PF08343 RNR_N: Ribonucleotide 30.3 32 0.00068 18.1 1.0 40 12-51 4-45 (82)
390 cd04439 DEP_1_P-Rex DEP (Dishe 30.3 89 0.0019 16.2 2.9 33 8-40 27-62 (81)
391 PF04305 DUF455: Protein of un 30.1 1.6E+02 0.0034 19.0 7.1 83 8-93 148-231 (253)
392 KOG0550 Molecular chaperone (D 30.1 2E+02 0.0044 20.4 6.4 44 22-65 262-308 (486)
393 PLN02789 farnesyltranstransfer 29.9 1.7E+02 0.0037 19.4 8.7 50 26-76 125-174 (320)
394 KOG3617 WD40 and TPR repeat-co 29.9 2.8E+02 0.0061 21.9 6.2 40 21-69 812-851 (1416)
395 PRK05414 urocanate hydratase; 29.6 21 0.00045 25.4 0.3 44 23-66 239-287 (556)
396 PF08461 HTH_12: Ribonuclease 29.4 82 0.0018 15.6 4.3 44 15-58 3-46 (66)
397 cd02663 Peptidase_C19G A subfa 29.0 1.6E+02 0.0035 18.9 4.4 26 13-38 12-37 (300)
398 PRK06645 DNA polymerase III su 28.9 2.2E+02 0.0048 20.4 7.1 58 22-80 220-293 (507)
399 PRK05629 hypothetical protein; 28.9 1.3E+02 0.0027 19.7 3.8 27 55-81 204-230 (318)
400 PF04053 Coatomer_WDAD: Coatom 28.6 2.1E+02 0.0046 20.0 6.9 54 11-70 375-428 (443)
401 PRK06305 DNA polymerase III su 28.5 2.1E+02 0.0045 20.0 6.9 55 22-78 213-281 (451)
402 cd08305 Pyrin Pyrin: a protein 28.1 43 0.00094 17.0 1.3 26 47-72 40-65 (73)
403 KOG4648 Uncharacterized conser 28.1 85 0.0018 21.7 2.9 42 19-62 107-149 (536)
404 PRK09111 DNA polymerase III su 28.0 2.5E+02 0.0053 20.6 7.8 57 22-80 224-294 (598)
405 PRK14958 DNA polymerase III su 27.8 2.3E+02 0.005 20.2 5.9 38 6-44 243-280 (509)
406 COG2812 DnaX DNA polymerase II 27.6 2.4E+02 0.0052 20.4 6.8 62 20-82 209-283 (515)
407 PRK02492 deoxyhypusine synthas 27.6 84 0.0018 21.3 2.8 59 10-75 24-86 (347)
408 cd00215 PTS_IIA_lac PTS_IIA, P 27.6 81 0.0018 17.0 2.4 19 19-37 25-43 (97)
409 PF15595 Imm31: Immunity prote 27.5 74 0.0016 17.5 2.2 24 36-59 31-54 (107)
410 cd06182 CYPOR_like NADPH cytoc 27.3 1.2E+02 0.0025 19.4 3.4 28 47-74 231-260 (267)
411 PF10345 Cohesin_load: Cohesin 27.3 2.5E+02 0.0053 20.4 6.6 63 22-84 374-452 (608)
412 PF11838 ERAP1_C: ERAP1-like C 27.2 1.7E+02 0.0038 18.7 8.9 67 8-77 168-235 (324)
413 PF02758 PYRIN: PAAD/DAPIN/Pyr 27.1 31 0.00067 17.8 0.6 24 42-65 57-80 (83)
414 PF11491 DUF3213: Protein of u 27.0 6.1 0.00013 20.9 -2.0 18 7-24 22-39 (88)
415 KOG0989 Replication factor C, 27.0 2.1E+02 0.0045 19.5 6.5 72 6-79 207-290 (346)
416 KOG0307 Vesicle coat complex C 27.0 3.3E+02 0.007 21.7 6.0 45 29-73 982-1026(1049)
417 KOG0508 Ankyrin repeat protein 26.9 70 0.0015 22.9 2.4 34 54-87 347-384 (615)
418 PRK05225 ketol-acid reductoiso 26.5 2.5E+02 0.0054 20.2 6.9 19 67-85 372-390 (487)
419 PRK05907 hypothetical protein; 26.4 2E+02 0.0043 19.0 5.7 26 55-80 215-241 (311)
420 KOG3617 WD40 and TPR repeat-co 26.3 2.1E+02 0.0045 22.6 4.7 33 42-74 1328-1360(1416)
421 COG4075 Uncharacterized conser 26.2 57 0.0012 17.9 1.5 31 38-74 37-67 (110)
422 PHA01754 hypothetical protein 26.1 93 0.002 15.4 2.1 17 61-77 47-63 (69)
423 KOG3120 Predicted haloacid deh 26.1 1E+02 0.0022 19.8 2.8 38 6-43 37-74 (256)
424 PRK10292 hypothetical protein; 26.0 1E+02 0.0022 15.5 4.3 39 32-70 22-60 (69)
425 PF11817 Foie-gras_1: Foie gra 25.9 1.8E+02 0.0038 18.3 7.2 28 43-70 177-204 (247)
426 KOG4334 Uncharacterized conser 25.9 85 0.0018 22.6 2.7 18 40-57 556-573 (650)
427 COG5159 RPN6 26S proteasome re 25.7 1.4E+02 0.0029 20.2 3.4 27 19-45 13-39 (421)
428 TIGR00823 EIIA-LAC phosphotran 25.7 92 0.002 16.9 2.3 19 19-37 27-45 (99)
429 cd09287 GluRS_non_core catalyt 25.7 1.9E+02 0.0041 18.5 4.0 39 29-75 56-94 (240)
430 KOG3327 Thymidylate kinase/ade 25.6 70 0.0015 19.9 2.0 37 50-86 66-103 (208)
431 PRK05094 dsDNA-mimic protein; 25.5 1.3E+02 0.0027 16.8 2.8 31 25-55 13-44 (107)
432 PRK11639 zinc uptake transcrip 25.5 1.6E+02 0.0034 17.5 6.5 48 14-61 30-77 (169)
433 PF10475 DUF2450: Protein of u 25.4 2E+02 0.0043 18.7 6.6 72 14-90 132-208 (291)
434 KOG0543 FKBP-type peptidyl-pro 25.1 2.4E+02 0.0053 19.6 9.2 71 9-82 257-327 (397)
435 PRK06585 holA DNA polymerase I 25.0 1.4E+02 0.0031 19.6 3.6 26 55-80 222-247 (343)
436 PRK00805 putative deoxyhypusin 24.9 30 0.00065 23.2 0.4 26 11-36 13-42 (329)
437 KOG1147 Glutamyl-tRNA syntheta 24.8 63 0.0014 23.6 1.9 20 30-49 254-273 (712)
438 PRK07003 DNA polymerase III su 24.7 3.3E+02 0.0072 21.0 9.0 56 22-78 211-279 (830)
439 PF11426 Tn7_TnsC_Int: Tn7 tra 24.5 93 0.002 14.6 2.2 17 30-46 26-42 (48)
440 smart00540 LEM in nuclear memb 24.4 48 0.001 15.2 1.0 17 65-81 10-26 (44)
441 PF15652 Tox-SHH: HNH/Endo VII 24.4 92 0.002 17.1 2.1 19 61-79 69-87 (100)
442 PF08631 SPO22: Meiosis protei 24.4 2E+02 0.0043 18.4 9.2 78 9-88 84-164 (278)
443 PRK02166 hypothetical protein; 24.3 1.8E+02 0.0039 17.8 7.5 64 7-70 6-69 (184)
444 PF08356 EF_assoc_2: EF hand a 24.3 1.3E+02 0.0028 16.1 3.3 28 8-35 30-57 (89)
445 KOG1130 Predicted G-alpha GTPa 24.3 2E+02 0.0044 20.5 4.2 56 10-66 16-77 (639)
446 cd08321 Pyrin_ASC-like Pyrin D 24.1 76 0.0016 16.5 1.8 12 24-35 60-71 (82)
447 PRK13341 recombination factor 24.0 3.2E+02 0.007 20.6 5.9 31 56-86 270-300 (725)
448 PF00356 LacI: Bacterial regul 24.0 90 0.002 14.3 2.3 18 61-78 29-46 (46)
449 KOG0686 COP9 signalosome, subu 23.8 2.7E+02 0.0059 19.7 6.4 64 10-73 151-216 (466)
450 PF00591 Glycos_transf_3: Glyc 23.7 2E+02 0.0043 18.1 5.9 52 23-74 193-249 (252)
451 TIGR01428 HAD_type_II 2-haloal 23.4 1.7E+02 0.0037 17.2 3.9 36 39-74 73-108 (198)
452 PRK14960 DNA polymerase III su 23.3 3.3E+02 0.0072 20.6 7.8 57 22-79 210-279 (702)
453 PRK09591 celC cellobiose phosp 23.3 1.1E+02 0.0023 16.8 2.4 19 19-37 30-48 (104)
454 PF00531 Death: Death domain; 23.3 1.1E+02 0.0024 15.1 2.9 39 26-66 41-79 (83)
455 PF00627 UBA: UBA/TS-N domain; 23.2 80 0.0017 13.4 4.3 32 32-67 6-37 (37)
456 smart00668 CTLH C-terminal to 23.0 95 0.0021 14.2 2.8 22 51-72 8-29 (58)
457 PF01347 Vitellogenin_N: Lipop 23.0 2.9E+02 0.0064 19.8 7.6 32 9-40 378-409 (618)
458 COG1608 Predicted archaeal kin 22.8 57 0.0012 21.0 1.3 49 26-77 81-130 (252)
459 PLN00214 putative protein; Pro 22.8 1.6E+02 0.0034 16.6 4.4 7 65-71 50-56 (115)
460 PF01371 Trp_repressor: Trp re 22.4 86 0.0019 16.6 1.8 22 48-69 4-25 (87)
461 COG3107 LppC Putative lipoprot 22.4 3.2E+02 0.007 20.1 7.7 64 14-78 68-133 (604)
462 COG4397 Mu-like prophage major 22.3 1.2E+02 0.0027 19.4 2.7 58 29-88 62-125 (308)
463 PF02937 COX6C: Cytochrome c o 22.1 96 0.0021 15.9 1.9 14 63-76 56-69 (73)
464 PRK14970 DNA polymerase III su 22.1 2.5E+02 0.0054 18.7 9.7 54 23-78 201-268 (367)
465 PRK12928 lipoyl synthase; Prov 22.1 67 0.0015 20.9 1.6 56 15-74 177-232 (290)
466 PF04212 MIT: MIT (microtubule 21.9 1.2E+02 0.0025 14.8 2.2 17 54-70 15-31 (69)
467 TIGR01914 cas_Csa4 CRISPR-asso 21.8 2.7E+02 0.0059 19.0 7.6 66 19-89 286-351 (354)
468 KOG3550 Receptor targeting pro 21.7 1.2E+02 0.0025 18.2 2.4 21 58-78 12-32 (207)
469 PRK10454 PTS system N,N'-diace 21.7 1.2E+02 0.0025 17.1 2.3 19 19-37 41-59 (115)
470 PF12968 DUF3856: Domain of Un 21.7 1.8E+02 0.0039 16.9 4.0 45 23-67 23-78 (144)
471 KOG0403 Neoplastic transformat 21.6 3.2E+02 0.007 19.8 7.8 62 13-75 513-574 (645)
472 COG5012 Predicted cobalamin bi 21.5 2.1E+02 0.0047 18.2 3.6 20 58-77 29-48 (227)
473 KOG2659 LisH motif-containing 21.4 2.3E+02 0.005 18.1 8.0 71 7-79 24-99 (228)
474 cd01786 STE50_RA Ubiquitin-lik 21.3 92 0.002 16.9 1.7 19 60-78 74-92 (98)
475 PF09082 DUF1922: Domain of un 21.3 55 0.0012 16.6 0.8 18 20-37 38-55 (68)
476 KOG0053 Cystathionine beta-lya 21.2 60 0.0013 22.5 1.3 40 22-61 330-369 (409)
477 COG1447 CelC Phosphotransferas 21.2 1.3E+02 0.0028 16.7 2.3 20 18-37 28-47 (105)
478 PRK10162 acetyl esterase; Prov 21.2 32 0.00069 22.4 0.0 46 26-71 263-309 (318)
479 KOG1642 Ribonuclease, T2 famil 21.2 1E+02 0.0022 20.0 2.2 36 14-49 138-173 (263)
480 KOG1002 Nucleotide excision re 21.2 3E+02 0.0066 20.3 4.6 51 30-84 475-525 (791)
481 PRK09462 fur ferric uptake reg 21.1 1.8E+02 0.0039 16.6 6.4 15 60-74 33-47 (148)
482 KOG2422 Uncharacterized conser 21.1 3.6E+02 0.0078 20.1 6.5 66 8-73 338-407 (665)
483 KOG1817 Ribonuclease [RNA proc 21.0 2.1E+02 0.0046 20.4 3.8 37 37-73 16-52 (533)
484 PF11013 DUF2851: Protein of u 21.0 2.9E+02 0.0063 19.0 5.9 61 6-66 138-198 (377)
485 PRK01221 putative deoxyhypusin 20.9 1.2E+02 0.0026 20.3 2.5 26 11-36 21-51 (312)
486 KOG4496 Predicted coiled-coil 20.8 93 0.002 18.5 1.8 15 30-44 150-164 (194)
487 KOG2536 MAM33, mitochondrial m 20.8 2.6E+02 0.0056 18.3 5.8 41 29-72 218-259 (263)
488 PF04762 IKI3: IKI3 family; I 20.8 2.9E+02 0.0063 21.5 4.7 28 11-38 814-843 (928)
489 cd08330 CARD_ASC_NALP1 Caspase 20.7 1.4E+02 0.0031 15.4 5.3 47 26-76 15-61 (82)
490 PRK07764 DNA polymerase III su 20.6 4E+02 0.0087 20.5 9.2 55 23-78 213-281 (824)
491 PF01175 Urocanase: Urocanase; 20.5 38 0.00082 24.2 0.2 43 24-66 230-277 (546)
492 PF11207 DUF2989: Protein of u 20.3 2.4E+02 0.0051 17.7 8.5 60 5-64 136-198 (203)
493 COG4649 Uncharacterized protei 20.3 2.3E+02 0.0051 17.7 7.1 70 10-80 60-130 (221)
494 PF07720 TPR_3: Tetratricopept 20.2 99 0.0021 13.3 3.4 19 50-68 7-25 (36)
495 PRK14720 transcript cleavage f 20.1 4.4E+02 0.0094 20.7 8.1 32 43-74 115-146 (906)
496 COG0292 RplT Ribosomal protein 20.1 1.8E+02 0.004 16.4 2.8 54 31-89 60-113 (118)
497 cd04371 DEP DEP domain, named 20.0 1.4E+02 0.003 14.8 3.0 20 56-75 43-62 (81)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.88 E-value=6.3e-22 Score=140.99 Aligned_cols=89 Identities=18% Similarity=0.382 Sum_probs=66.2
Q ss_pred cccC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 034447 2 QQHG-KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAV 80 (94)
Q Consensus 2 ~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 80 (94)
.+.+ .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||.+
T Consensus 464 ~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v 543 (1060)
T PLN03218 464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 3445 677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhh
Q 034447 81 TYNTVYQSDH 90 (94)
Q Consensus 81 ~~~~ll~~~~ 90 (94)
+|++||++|+
T Consensus 544 TYnsLI~a~~ 553 (1060)
T PLN03218 544 VFNALISACG 553 (1060)
T ss_pred HHHHHHHHHH
Confidence 7777777744
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.87 E-value=2e-21 Score=138.44 Aligned_cols=88 Identities=26% Similarity=0.440 Sum_probs=63.8
Q ss_pred ccC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 034447 3 QHG-KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVT 81 (94)
Q Consensus 3 ~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 81 (94)
+.+ .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 344 6777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhh
Q 034447 82 YNTVYQSDH 90 (94)
Q Consensus 82 ~~~ll~~~~ 90 (94)
|+++|++|+
T Consensus 757 y~sLL~a~~ 765 (1060)
T PLN03218 757 YSILLVASE 765 (1060)
T ss_pred HHHHHHHHH
Confidence 777777744
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.84 E-value=4.8e-21 Score=132.40 Aligned_cols=79 Identities=16% Similarity=0.377 Sum_probs=40.8
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTV 85 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 85 (94)
.||..+||+|+++|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|+++|++|.+.|+.||.+||+++
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 432 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44444444444444444444444444444432 45555555555555555555555555555555555555555555
Q ss_pred HHH
Q 034447 86 YQS 88 (94)
Q Consensus 86 l~~ 88 (94)
|++
T Consensus 433 l~a 435 (697)
T PLN03081 433 LSA 435 (697)
T ss_pred HHH
Confidence 555
No 4
>PF13041 PPR_2: PPR repeat family
Probab=99.84 E-value=1.7e-20 Score=90.46 Aligned_cols=49 Identities=37% Similarity=0.642 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhh
Q 034447 42 VNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQSDH 90 (94)
Q Consensus 42 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 90 (94)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555544
No 5
>PF13041 PPR_2: PPR repeat family
Probab=99.84 E-value=1.4e-20 Score=90.75 Aligned_cols=50 Identities=18% Similarity=0.389 Sum_probs=49.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVR 56 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 56 (94)
||+.+||++|++|++.|++++|.++|++|++.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.82 E-value=1.3e-19 Score=127.47 Aligned_cols=86 Identities=16% Similarity=0.269 Sum_probs=77.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCccHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIK-QSGLTPDAVTYNT 84 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~ 84 (94)
.||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|. +.|+.|+..+|++
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999998 6799999999999
Q ss_pred HHHHhhc
Q 034447 85 VYQSDHI 91 (94)
Q Consensus 85 ll~~~~~ 91 (94)
+++++++
T Consensus 631 lv~~l~r 637 (857)
T PLN03077 631 VVDLLGR 637 (857)
T ss_pred HHHHHHh
Confidence 9999443
No 7
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.82 E-value=8.6e-20 Score=126.20 Aligned_cols=86 Identities=20% Similarity=0.317 Sum_probs=80.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCccHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ-SGLTPDAVTYNT 84 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ 84 (94)
+||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|.+++|.++|++|.+ .|+.|+..+|++
T Consensus 388 ~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 6899999999999999999999999999999999999999999999999999999999999999976 599999999999
Q ss_pred HHHHhhc
Q 034447 85 VYQSDHI 91 (94)
Q Consensus 85 ll~~~~~ 91 (94)
+|++|++
T Consensus 468 li~~l~r 474 (697)
T PLN03081 468 MIELLGR 474 (697)
T ss_pred HHHHHHh
Confidence 9999543
No 8
>PLN03077 Protein ECB2; Provisional
Probab=99.78 E-value=2.9e-18 Score=120.79 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=55.3
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTV 85 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 85 (94)
.||.++||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+.+.+.+++..|.+.|+.||..+|++|
T Consensus 250 ~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~L 329 (857)
T PLN03077 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329 (857)
T ss_pred CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHH
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhh
Q 034447 86 YQSDH 90 (94)
Q Consensus 86 l~~~~ 90 (94)
|++|+
T Consensus 330 i~~y~ 334 (857)
T PLN03077 330 IQMYL 334 (857)
T ss_pred HHHHH
Confidence 66643
No 9
>PF12854 PPR_1: PPR repeat
Probab=99.53 E-value=1.7e-14 Score=64.05 Aligned_cols=34 Identities=21% Similarity=0.489 Sum_probs=25.4
Q ss_pred CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 38 ESDKVNVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 38 ~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
+|+.||..|||+||++||+.|++++|+++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677777777777777777777777777777763
No 10
>PF12854 PPR_1: PPR repeat
Probab=99.40 E-value=6.1e-13 Score=59.00 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=30.6
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 034447 5 GKTSISSYSSYIKFLGKNGNSLKALEIYNSIT 36 (94)
Q Consensus 5 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 36 (94)
..||..|||+||++||+.|++++|.++|++|+
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 48999999999999999999999999999985
No 11
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=99.21 E-value=3.9e-11 Score=52.86 Aligned_cols=33 Identities=30% Similarity=0.683 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 46 ICNLILSCLVRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 46 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777765
No 12
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=99.17 E-value=5.9e-11 Score=52.27 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNV 44 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 44 (94)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 13
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=99.17 E-value=6.6e-11 Score=52.05 Aligned_cols=33 Identities=30% Similarity=0.645 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 034447 45 FICNLILSCLVRNGKFESSLKLFDKIKQSGLTP 77 (94)
Q Consensus 45 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 77 (94)
.+|+++|++|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666665555554
No 14
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=99.14 E-value=1e-10 Score=51.42 Aligned_cols=33 Identities=18% Similarity=0.459 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKV 42 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 42 (94)
.|||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999988
No 15
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=99.02 E-value=4.1e-10 Score=48.41 Aligned_cols=29 Identities=31% Similarity=0.691 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 46 ICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 46 t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
|||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 55666666666666666666666665554
No 16
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=99.01 E-value=3.1e-08 Score=54.76 Aligned_cols=84 Identities=20% Similarity=0.193 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CchHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHcCCCccHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESD-KVNVFICNLILSCLVRNGK--------FESSLKLFDKIKQSGLTPDAVT 81 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~t~~~li~~~~~~g~--------~~~a~~~~~~m~~~g~~p~~~~ 81 (94)
|-...|..+...+++..--.+|+.+++.|+ .|++.+|+.++.+.+++.. .-+.+.+|++|...++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334567777777999999999999999999 8999999999999987753 3356789999999999999999
Q ss_pred HHHHHHHhhcccC
Q 034447 82 YNTVYQSDHITWI 94 (94)
Q Consensus 82 ~~~ll~~~~~~~~ 94 (94)
|+++|..+.+|-|
T Consensus 107 Ynivl~~LlkgSi 119 (120)
T PF08579_consen 107 YNIVLGSLLKGSI 119 (120)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999877753
No 17
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.96 E-value=1.1e-09 Score=47.00 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESD 40 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 40 (94)
+|||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999998875
No 18
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=8e-09 Score=68.54 Aligned_cols=81 Identities=21% Similarity=0.399 Sum_probs=62.6
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHH----HHHHHHHHHcCCCccHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESS----LKLFDKIKQSGLTPDAVT 81 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a----~~~~~~m~~~g~~p~~~~ 81 (94)
+.+..+||.+|.+-+ +....++..+|....++||..|||+++.+.++.|+++.| .+++.+|++-|+.|...+
T Consensus 239 kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsS 314 (625)
T KOG4422|consen 239 KVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSS 314 (625)
T ss_pred eeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhh
Confidence 445555555555444 222256677888888999999999999999999988764 568889999999999999
Q ss_pred HHHHHHHhh
Q 034447 82 YNTVYQSDH 90 (94)
Q Consensus 82 ~~~ll~~~~ 90 (94)
|-.+|.-++
T Consensus 315 yh~iik~f~ 323 (625)
T KOG4422|consen 315 YHLIIKNFK 323 (625)
T ss_pred HHHHHHHhc
Confidence 999988744
No 19
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.79 E-value=1.3e-07 Score=57.75 Aligned_cols=85 Identities=9% Similarity=0.214 Sum_probs=74.5
Q ss_pred CccHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhc----------------CCHHHHH
Q 034447 6 KTSISSYSSYIKFLGKN-----GNSLKALEIYNSITDESDKVNVFICNLILSCLVRN----------------GKFESSL 64 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~----------------g~~~~a~ 64 (94)
..|-.+|..+++.|.+. |.++=-...++.|.+-|+.-|+.+|+.||+.+-+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 56788999999999865 78888888999999999999999999999998653 2346788
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHhh
Q 034447 65 KLFDKIKQSGLTPDAVTYNTVYQSDH 90 (94)
Q Consensus 65 ~~~~~m~~~g~~p~~~~~~~ll~~~~ 90 (94)
+++++|...|+.||..|+..|++.+-
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG 149 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFG 149 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhc
Confidence 99999999999999999999999853
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=2.3e-07 Score=61.78 Aligned_cols=79 Identities=20% Similarity=0.167 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+..||.++|.+.|+.-..+.|.+++++-.....+.+..+||.+|.+-.-..+ .+++.+|......||..|||++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 5679999999999999999999999999999999999999999998665443 689999999999999999999999
Q ss_pred Hhh
Q 034447 88 SDH 90 (94)
Q Consensus 88 ~~~ 90 (94)
+.+
T Consensus 282 c~a 284 (625)
T KOG4422|consen 282 CAA 284 (625)
T ss_pred HHH
Confidence 843
No 21
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.62 E-value=4.5e-07 Score=60.49 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQSD 89 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 89 (94)
.|..++++.|.+.|..+.+..+++.=...|+-||-+|||.+|+.+.+.|++..|.++...|...+.-.+..|+..-+-+|
T Consensus 104 ~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 104 STHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 45569999999999999999999999999999999999999999999999999999999998887777888887766664
Q ss_pred h
Q 034447 90 H 90 (94)
Q Consensus 90 ~ 90 (94)
.
T Consensus 184 ~ 184 (429)
T PF10037_consen 184 Y 184 (429)
T ss_pred H
Confidence 3
No 22
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=98.44 E-value=1.4e-05 Score=45.22 Aligned_cols=81 Identities=16% Similarity=0.092 Sum_probs=70.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHh---------------hCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSIT---------------DESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~---------------~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
|..++..+|.++++.|+++....+++..= ...+.|+..+..+++.+|+..+++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 67899999999999999999999987651 234569999999999999999999999999999875
Q ss_pred -cCCCccHHHHHHHHHH
Q 034447 73 -SGLTPDAVTYNTVYQS 88 (94)
Q Consensus 73 -~g~~p~~~~~~~ll~~ 88 (94)
-+++.+..+|..|++=
T Consensus 81 ~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HcCCCCCHHHHHHHHHH
Confidence 4788788999988875
No 23
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.35 E-value=3e-06 Score=60.48 Aligned_cols=81 Identities=9% Similarity=0.049 Sum_probs=75.6
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTV 85 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 85 (94)
.|+..+|.++++.-..+|+.+.|..++.+|++.|++.+..-|..++-+ .++...++.+++-|...|+.|++.|+..-
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 589999999999999999999999999999999999999999999887 89999999999999999999999999876
Q ss_pred HHHh
Q 034447 86 YQSD 89 (94)
Q Consensus 86 l~~~ 89 (94)
+-.+
T Consensus 278 vip~ 281 (1088)
T KOG4318|consen 278 VIPQ 281 (1088)
T ss_pred HHhh
Confidence 6554
No 24
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.25 E-value=3.5e-07 Score=64.98 Aligned_cols=78 Identities=18% Similarity=0.148 Sum_probs=56.9
Q ss_pred CcccC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 034447 1 MQQHG-KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDA 79 (94)
Q Consensus 1 M~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 79 (94)
|+..| .||.+||..++.-||..|+.+.|- +|.-|+....+.+...|++++.+..++++.+.+. .|..
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 35567 999999999999999999999998 9988887666656666666666666665555444 4555
Q ss_pred HHHHHHHHHhh
Q 034447 80 VTYNTVYQSDH 90 (94)
Q Consensus 80 ~~~~~ll~~~~ 90 (94)
-||..|+.+|+
T Consensus 84 Dtyt~Ll~ayr 94 (1088)
T KOG4318|consen 84 DTYTNLLKAYR 94 (1088)
T ss_pred hHHHHHHHHHH
Confidence 66666666644
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.18 E-value=5.4e-05 Score=49.44 Aligned_cols=75 Identities=11% Similarity=0.118 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
.+++.+..+|.+.|++++|...++++.+. .|+...+..+...+.+.|++++|.++++++.+. .|+..++..++..
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~ 324 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence 45677777777888888888877777654 355566677777788888888888888777654 4777777777665
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.08 E-value=0.00012 Score=47.81 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
..+..+...+.+.|++++|.+.|+++...+-.....+++.+..+|.+.|++++|...++++.+.. |+...+..+...
T Consensus 215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~ 291 (389)
T PRK11788 215 RASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQL 291 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 34455555666666666666666666543211123445566666666666666666666655542 443444444443
No 27
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.98 E-value=4.4e-05 Score=46.90 Aligned_cols=71 Identities=10% Similarity=0.207 Sum_probs=57.3
Q ss_pred CcccC-CccHHHHHHHHHHHHhcC----------------CHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCH-HH
Q 034447 1 MQQHG-KTSISSYSSYIKFLGKNG----------------NSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKF-ES 62 (94)
Q Consensus 1 M~~~~-~p~~~~~~~ll~~~~~~g----------------~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~-~~ 62 (94)
|.+-| .-|..+|+.||+.+=+.. +-+-|.+++++|...|+-||..|+..+++.|++.+.+ .+
T Consensus 78 M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K 157 (228)
T PF06239_consen 78 MDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKK 157 (228)
T ss_pred HHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHH
Confidence 55667 889999999999998742 3377899999999999999999999999999988854 34
Q ss_pred HHHHHHHHH
Q 034447 63 SLKLFDKIK 71 (94)
Q Consensus 63 a~~~~~~m~ 71 (94)
..++.=-|.
T Consensus 158 ~~rmmYWmp 166 (228)
T PF06239_consen 158 YRRMMYWMP 166 (228)
T ss_pred HHHHHHHHH
Confidence 555544443
No 28
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.93 E-value=0.00026 Score=45.49 Aligned_cols=85 Identities=8% Similarity=0.142 Sum_probs=69.4
Q ss_pred CccHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC----------------CHHHHH
Q 034447 6 KTSISSYSSYIKFLGKN-----GNSLKALEIYNSITDESDKVNVFICNLILSCLVRNG----------------KFESSL 64 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g----------------~~~~a~ 64 (94)
+-|-.+|-+.+..+... +.++---..++.|.+.|+..|..+|+.||+.+-+.. ..+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44667777777777654 556766777899999999999999999999986553 234577
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHhh
Q 034447 65 KLFDKIKQSGLTPDAVTYNTVYQSDH 90 (94)
Q Consensus 65 ~~~~~m~~~g~~p~~~~~~~ll~~~~ 90 (94)
+++++|...|+.||..+-..||+++-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FG 169 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFG 169 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhc
Confidence 89999999999999999999999863
No 29
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.93 E-value=5.6e-05 Score=42.01 Aligned_cols=52 Identities=23% Similarity=0.334 Sum_probs=45.9
Q ss_pred CccHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhc
Q 034447 6 KTSISSYSSYIKFLGKNG--------NSLKALEIYNSITDESDKVNVFICNLILSCLVRN 57 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 57 (94)
.|++.+||.+|.+-++.. .+.+...+++.|...+++|+..||+.++.+..+.
T Consensus 58 lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 58 LPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLKG 117 (120)
T ss_pred CCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHh
Confidence 799999999999999863 3567788999999999999999999999987654
No 30
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.91 E-value=0.00035 Score=40.01 Aligned_cols=72 Identities=15% Similarity=0.289 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ-----SGLTPDAVTYN 83 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~ 83 (94)
....+...+...|++++|..+.+...... +.|...|..+|.+|...|+..+|.++|+++.+ -|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44566677778999999999999988642 34899999999999999999999999988743 39999887643
No 31
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.81 E-value=0.00016 Score=48.61 Aligned_cols=87 Identities=10% Similarity=0.124 Sum_probs=73.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDE--SDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYN 83 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 83 (94)
..+......+++.+...-+++++..++-+.... ....-..|..++|+.|.+.|..+.++.+++.=..-|+-||..+|+
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 557788888999999888999999998888754 332334455699999999999999999999999999999999999
Q ss_pred HHHHH-hhcc
Q 034447 84 TVYQS-DHIT 92 (94)
Q Consensus 84 ~ll~~-~~~~ 92 (94)
.|++. ...|
T Consensus 143 ~Lmd~fl~~~ 152 (429)
T PF10037_consen 143 LLMDHFLKKG 152 (429)
T ss_pred HHHHHHhhcc
Confidence 99998 4444
No 32
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.70 E-value=0.00072 Score=33.36 Aligned_cols=57 Identities=14% Similarity=0.258 Sum_probs=48.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 16 IKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 16 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
-..+.+.|++++|..+|++..+.. +-+...+..+-..+...|++++|...|++..+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356788999999999999999765 338889999999999999999999999998654
No 33
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.64 E-value=0.00063 Score=33.76 Aligned_cols=63 Identities=19% Similarity=0.410 Sum_probs=49.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 034447 20 GKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTV 85 (94)
Q Consensus 20 ~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 85 (94)
.+.|++++|.++|++..... +-|...+-.+..+|.+.|++++|..++++..... |+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHHH
Confidence 46799999999999987642 2277788889999999999999999999988764 554444443
No 34
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.48 E-value=0.0041 Score=43.92 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.++..+...+.+.|++++|..+++.+.... +.+...+..+...+...|++++|.+.|+++.+
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333444444444444444444444443322 12333344444444444444444444444433
No 35
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.47 E-value=0.0021 Score=32.82 Aligned_cols=63 Identities=22% Similarity=0.374 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDE----S-DKVN-VFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~-~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
..+|+.+-..|.+.|++++|...|++..+. | -.|+ ..+++.+-..|...|++++|++.+++-.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 357888899999999999999999988643 2 1244 7788899999999999999999998754
No 36
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.35 E-value=0.0023 Score=45.20 Aligned_cols=85 Identities=13% Similarity=-0.005 Sum_probs=66.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTV 85 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 85 (94)
..+...++.+...+.+.|+ ++|...+++..... +-+..++..+...+...|++++|...++++.+.+.. +..++..+
T Consensus 801 p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l 877 (899)
T TIGR02917 801 PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHL 877 (899)
T ss_pred CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHH
Confidence 3577888999999999999 88999998887542 225566777888889999999999999999887643 77888888
Q ss_pred HHH-hhccc
Q 034447 86 YQS-DHITW 93 (94)
Q Consensus 86 l~~-~~~~~ 93 (94)
..+ +..|+
T Consensus 878 ~~~~~~~g~ 886 (899)
T TIGR02917 878 ALALLATGR 886 (899)
T ss_pred HHHHHHcCC
Confidence 877 44443
No 37
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=97.28 E-value=0.014 Score=37.41 Aligned_cols=78 Identities=10% Similarity=0.169 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ-----SGLTPDAVTYNT 84 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 84 (94)
.++..+...+...|+.+.+.+.++++.... +.|...|..+|.+|.+.|+...|++.|+++.+ -|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 467778889999999999999999998653 35999999999999999999999999999876 499999888776
Q ss_pred HHHH
Q 034447 85 VYQS 88 (94)
Q Consensus 85 ll~~ 88 (94)
..+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6655
No 38
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.17 E-value=0.0073 Score=29.93 Aligned_cols=64 Identities=13% Similarity=0.190 Sum_probs=54.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNG-KFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~ 72 (94)
++..|..+=..+.+.|++++|...|++..+.. +-+...|..+-.+|.+.| ++++|++.+++-.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46678888889999999999999999888753 338888999999999999 79999999988654
No 39
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.87 E-value=0.0048 Score=32.01 Aligned_cols=47 Identities=23% Similarity=0.459 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHhhCCC-CchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 034447 23 GNSLKALEIYNSITDESD-KVNVFICNLILSCLVRNGKFESSLKLFDK 69 (94)
Q Consensus 23 g~~~~a~~~~~~m~~~~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 69 (94)
|+++.|..+++++.+..- .++...+-.+..+|.+.|++++|+.++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444455555554443211 11222333344445555555555555544
No 40
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=96.85 E-value=0.034 Score=32.32 Aligned_cols=84 Identities=13% Similarity=0.133 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----CchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCccHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESD-----KVNVFICNLILSCLVRNGK-FESSLKLFDKIKQSGLTPDAVTY 82 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~t~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~ 82 (94)
....|++|...+..+++.....+++.+..... ..+-..|.+++++.+++.- --.+..+|+.|++.+.+++..-|
T Consensus 39 ~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy 118 (145)
T PF13762_consen 39 TIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDY 118 (145)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 46678999999999999999999988853211 1455679999999987776 44677889999998999999999
Q ss_pred HHHHHHhhcc
Q 034447 83 NTVYQSDHIT 92 (94)
Q Consensus 83 ~~ll~~~~~~ 92 (94)
..+|+++-+|
T Consensus 119 ~~li~~~l~g 128 (145)
T PF13762_consen 119 SCLIKAALRG 128 (145)
T ss_pred HHHHHHHHcC
Confidence 9999998776
No 41
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.74 E-value=0.021 Score=28.55 Aligned_cols=58 Identities=14% Similarity=0.195 Sum_probs=49.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 16 IKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 16 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
-..|.+.+++++|.++++.+...+ +.+...|...-..+.+.|++++|...|++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 356889999999999999998752 2377778888888999999999999999988654
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=96.70 E-value=0.085 Score=36.77 Aligned_cols=65 Identities=9% Similarity=-0.008 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...+..+-..+...|++++|...|++..+.+ +-+...|..+-..+...|++++|+..+++..+.
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL 401 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34444444455555666666666666655432 113445555555566666666666666665443
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.64 E-value=0.043 Score=34.66 Aligned_cols=80 Identities=13% Similarity=0.081 Sum_probs=47.9
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHH
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDE-SDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPD-AVTYNT 84 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ 84 (94)
++...+...+..+.+.++++++.+++++.... ..+.+...|..+...+.+.|+.++|++.+++..+.. |+ ......
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~ 185 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNA 185 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHH
Confidence 45566777888888889999999998887643 345677888888888889999999999998877653 43 444544
Q ss_pred HHHH
Q 034447 85 VYQS 88 (94)
Q Consensus 85 ll~~ 88 (94)
++..
T Consensus 186 l~~~ 189 (280)
T PF13429_consen 186 LAWL 189 (280)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 44
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.63 E-value=0.044 Score=30.56 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
......+...+.+.|++++|...|+.....+ +.+...|..+-..+...|++++|...+++..+.+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445556666667777777777777776543 2366666677777777777777777777765543
No 45
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.58 E-value=0.0099 Score=30.81 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDK 69 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 69 (94)
+...+-.+-.+|.+.|++++|..+++. ...+- .+....-.+-.++.+.|++++|++++++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 344455578899999999999999988 32221 1334444557889999999999999875
No 46
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.54 E-value=0.052 Score=30.25 Aligned_cols=75 Identities=15% Similarity=0.090 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTV 85 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 85 (94)
+...+..+-..+.+.|++++|...++...... +.+...+..+-..+...|++++|.+.|++..+.. |+...+..+
T Consensus 50 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 124 (135)
T TIGR02552 50 NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKALDLAIEIC--GENPEYSEL 124 (135)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccchHHHH
Confidence 56777788888889999999999999887653 3467777778889999999999999999887754 555544433
No 47
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.42 E-value=0.073 Score=30.59 Aligned_cols=64 Identities=11% Similarity=-0.054 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+...|..+-.++.+.|++++|...|+...... +.+...+..+-.++...|+.++|+..|++..+
T Consensus 57 ~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 57 SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444555555555555444321 12444444444445555555555555554433
No 48
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.11 Score=33.28 Aligned_cols=84 Identities=13% Similarity=0.186 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 034447 8 SISSYSSYIKFLGKN----GNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYN 83 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 83 (94)
+..|.+.|-.+|.+. +...+|.-+|++|-+ ...|+.-+-|-...++...|++++|..+++....+.-. ++.+..
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHH
Confidence 345667676666653 568999999999975 36789999999999999999999999999998765432 233333
Q ss_pred HHH-HHhhccc
Q 034447 84 TVY-QSDHITW 93 (94)
Q Consensus 84 ~ll-~~~~~~~ 93 (94)
.+| .+.+.|+
T Consensus 246 Nliv~a~~~Gk 256 (299)
T KOG3081|consen 246 NLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHhCC
Confidence 333 3355553
No 49
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.29 E-value=0.099 Score=30.75 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV--NVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...|..+-..+.+.|++++|...|++.....-.+ ....+..+...+.+.|++++|...+++..+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34566777778888999999999999887643222 2467888889999999999999999998764
No 50
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.27 E-value=0.088 Score=33.93 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH-hhcc
Q 034447 24 NSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS-DHIT 92 (94)
Q Consensus 24 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~ 92 (94)
.+.+|.-+|+++.+. +.++..+.|.+..++...|++++|.+++++-...+- -+..+...++.. .+.|
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLG 249 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhC
Confidence 577788888887553 557788888888888888888888888888654432 233444444444 4444
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.26 E-value=0.11 Score=30.86 Aligned_cols=62 Identities=10% Similarity=-0.003 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..+..+-..+.+.|++++|...+++..... +.+...+..+...+...|++++|.+.+++..+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 93 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALT 93 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444445555555555555555444321 12334444444555555555555555554443
No 52
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.23 E-value=0.052 Score=26.99 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+..+...+.+.|++++|...+++..+.. +.+...+..+...+...+++++|.+.+++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4556667778899999999998876542 2244667778888888899999999998877654
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.20 E-value=0.12 Score=30.68 Aligned_cols=61 Identities=10% Similarity=-0.011 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+..+-..+.+.|++++|...+++..... +.+...+..+...+...|++++|...+++..+.
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 138 LENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344445555566666666665554321 123445555666666666666666666665544
No 54
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.14 E-value=0.06 Score=30.51 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=46.6
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCCchHHHHHHHHHHHHhcC
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSIT-DESDKVNVFICNLILSCLVRNG 58 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~t~~~li~~~~~~g 58 (94)
.|+..+..+++.+|+..+++..|.++.+... ..+++.+..+|..|+.=....-
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 7999999999999999999999999999886 4588888999999998765443
No 55
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.12 E-value=0.083 Score=35.37 Aligned_cols=60 Identities=8% Similarity=0.142 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
...++=..+.+.|++++|.+.|+.-......||...+..+...+-+.|+.++|.+++++-
T Consensus 337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 337 INRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334555566677777777777774333334577777777777777777777777777763
No 56
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.11 E-value=0.16 Score=35.16 Aligned_cols=78 Identities=14% Similarity=0.222 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLV-RNGKFESSLKLFDKIKQSGLTPDAVTYNTVY 86 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 86 (94)
|..|-..|-..|....-++++...|++-.. +.|+..-|..||..|. +.|++++|+++|++.-++ ++-|..+..-|+
T Consensus 625 nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflv 701 (840)
T KOG2003|consen 625 NIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLV 701 (840)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHH
Confidence 666777777888888888999998887653 5799999999998876 568999999999998654 444555555555
Q ss_pred HH
Q 034447 87 QS 88 (94)
Q Consensus 87 ~~ 88 (94)
+.
T Consensus 702 ri 703 (840)
T KOG2003|consen 702 RI 703 (840)
T ss_pred HH
Confidence 54
No 57
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.08 E-value=0.033 Score=36.18 Aligned_cols=72 Identities=10% Similarity=0.153 Sum_probs=55.5
Q ss_pred CcccC-CccHHHHHHHHHHHHhcC----------------CHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCH-HH
Q 034447 1 MQQHG-KTSISSYSSYIKFLGKNG----------------NSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKF-ES 62 (94)
Q Consensus 1 M~~~~-~p~~~~~~~ll~~~~~~g----------------~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~-~~ 62 (94)
|.+-| .-|..+|+.||..+-+-. .-+=+..++++|...|+-||..+-..++++|++-+.+ .+
T Consensus 98 m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K 177 (406)
T KOG3941|consen 98 MKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKK 177 (406)
T ss_pred HHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHH
Confidence 44556 779999999999887653 2244688999999999999999999999999998854 35
Q ss_pred HHHHHHHHHH
Q 034447 63 SLKLFDKIKQ 72 (94)
Q Consensus 63 a~~~~~~m~~ 72 (94)
..++.--|.+
T Consensus 178 ~~Rm~yWmPk 187 (406)
T KOG3941|consen 178 VKRMLYWMPK 187 (406)
T ss_pred HHHHHHhhhh
Confidence 5555555543
No 58
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.00 E-value=0.033 Score=35.16 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
|...|..+-..+.+.|+.++|.+++++..+. .| |....+.++..+...|+.+++..+++...+.
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA 209 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 4455555555556666666666666655442 24 3445555555555555555555555554433
No 59
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.99 E-value=0.072 Score=26.45 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...+..+-..+...+++++|.+.++...... +.+..++..+...+...|++++|...+++..+.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 33 NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 33567778888888999999999999887653 234468888889999999999999999887653
No 60
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.98 E-value=0.25 Score=32.68 Aligned_cols=66 Identities=11% Similarity=-0.027 Sum_probs=53.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+...|..+-.+|.+.|++++|...++...... +.+...|..+-.+|...|++++|+..|++..+..
T Consensus 35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 35 NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 55677778888899999999999999887642 2367778888888999999999999999987643
No 61
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.81 E-value=0.17 Score=33.85 Aligned_cols=61 Identities=10% Similarity=0.153 Sum_probs=50.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 034447 16 IKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTP 77 (94)
Q Consensus 16 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 77 (94)
-..+...|++++|...+++..+.. +-+......+...|.+.|++++|.+++.++.+.+..+
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~ 220 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD 220 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC
Confidence 457778899999999999887654 3377888888999999999999999999998876653
No 62
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.81 E-value=0.033 Score=24.28 Aligned_cols=26 Identities=12% Similarity=0.299 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 46 ICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 46 t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
+|+.|-+.|.+.|++++|+.+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788889999999999999998843
No 63
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.81 E-value=0.26 Score=33.76 Aligned_cols=65 Identities=9% Similarity=-0.008 Sum_probs=55.8
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNV----FICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
.+...++.+=.+|.+.|++++|...|++-.+. .|+. .+|..+-.+|...|+.++|+..+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36788999999999999999999999986654 3653 46899999999999999999999987764
No 64
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.66 E-value=0.35 Score=33.73 Aligned_cols=73 Identities=10% Similarity=-0.057 Sum_probs=57.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCccHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ-SGLTPDAVTY 82 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~ 82 (94)
+...|.++-......|++++|...+++....+ |+...|..+-..+...|+.++|...+++-.+ +...|+.+.+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~ 492 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWI 492 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHH
Confidence 44667766555566799999999999988765 7889999999999999999999999988654 3444544333
No 65
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.66 E-value=0.21 Score=33.46 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDK 69 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 69 (94)
.+.++=..+.+.+++++|.+.|+...+. .|+..+|-.+...+.+.|+.++|.+.+++
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444555555556666666666555543 35555555666666666666666555554
No 66
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.65 E-value=0.48 Score=33.90 Aligned_cols=59 Identities=17% Similarity=-0.034 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
+..+-..+.+.|++++|...+++..... +.+...+..+...+...|++++|...++++.
T Consensus 113 ~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 113 VLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 3334444444455555555554444320 1133444444444555555555555544443
No 67
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.55 E-value=0.21 Score=28.64 Aligned_cols=62 Identities=3% Similarity=-0.061 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+..+-..+.+.|++++|...|+...... +.+...|..+-..+...|++++|+..|++..+..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4456677788999999999999987543 3488899999999999999999999999998743
No 68
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.48 E-value=0.17 Score=27.13 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCC--CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 13 SSYIKFLGKNGNSLKALEIYNSITDESD--KVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 13 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
-.+...+.+.|++++|...|+......= ......+..+...+.+.|+++.|.+.|++...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3444445555555555555555543210 00122333455555555555555555555543
No 69
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=95.42 E-value=0.6 Score=32.97 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
|..+-..+...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++.
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3333333444444444444444333221 112333333333344444444444444443
No 70
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.36 E-value=0.22 Score=33.44 Aligned_cols=62 Identities=15% Similarity=-0.073 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
..+..|=..|.+.+.+.+|...|+.-. ...|+..+|+-+-+++.+.|++++|.+++++-...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 455666677889999999999999444 45799999999999999999999999999886543
No 71
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.36 E-value=0.19 Score=26.94 Aligned_cols=65 Identities=8% Similarity=-0.067 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDES--DKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
..+..+-..+.+.|+++.|...|+...... .+.....+..+...+.+.|+.++|.+.+++..+..
T Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 455668888999999999999999987532 11224567777888999999999999999998774
No 72
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.34 E-value=0.68 Score=33.16 Aligned_cols=63 Identities=8% Similarity=0.044 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
...+..+...+.+.|++++|...++.+....-.+ ...+..+ ..+...|++++|...++++.+.
T Consensus 144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 144 SQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence 4455556666666666666666666554322111 1112112 2345556666666666655443
No 73
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.24 E-value=0.22 Score=33.60 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
|....+.-...+.+.++.+.|..+.++.... .| +..+|..|..+|.+.|+++.|+..++.+..
T Consensus 233 d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 233 DSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 4445555556677888899999999888754 46 555999999999999999999988888753
No 74
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.24 E-value=0.22 Score=28.41 Aligned_cols=58 Identities=12% Similarity=0.186 Sum_probs=39.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCchH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 15 YIKFLGKNGNSLKALEIYNSITDESDKVNV--FICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 15 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+-..+...|++++|...|+......-.|+. ...-.+...+...|++++|+..++....
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~ 113 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD 113 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC
Confidence 445666778888888888888776533332 2344456677788888888888866433
No 75
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=95.23 E-value=0.84 Score=34.42 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=41.9
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
.|+...|..+-..+.+.|++++|...+++..... +-+...++.+-..+...|+.++|+..+++..+.
T Consensus 606 ~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 606 APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3555666666666777777777777776665432 124555555556666777777777777666553
No 76
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.20 E-value=0.57 Score=31.45 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=51.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 034447 15 YIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTP 77 (94)
Q Consensus 15 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 77 (94)
....+.+.|++++|...++.+.+.. +-+......+...+.+.|++++|.+.+++..+.+..+
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 4666777899999999999998764 2367788899999999999999999999999887643
No 77
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.15 E-value=0.28 Score=27.59 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=41.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 18 FLGKNGNSLKALEIYNSITDESDKVN--VFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 18 ~~~~~g~~~~a~~~~~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
++-..|+.++|..+|++-...|.... ...+-.+-..+...|++++|..++++....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456888888888888888777654 345555666777888888888888877654
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=94.86 E-value=0.6 Score=29.99 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+...|+.+=..+...|++++|...|+...+. .| +..+|..+-..+...|++++|++.|++..+
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455666666666667777777666666542 23 345555555666666677777666666554
No 79
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.71 E-value=0.51 Score=30.19 Aligned_cols=76 Identities=11% Similarity=0.248 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDE-SDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
.+|..++...-+.+..+.|..+|.+..+. .+..+++...+++. |...++.+.|.++|+...+. +..+...|..-|+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 46777777777777777788887777643 23455555555554 22345666677777776654 2233333443333
No 80
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.61 E-value=0.15 Score=23.06 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 46 ICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 46 t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+|..+-..|.+.|++++|+++|++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 56778888999999999999999988753
No 81
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.60 E-value=0.12 Score=29.40 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHh-----hCCCCchHHHHH
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSIT-----DESDKVNVFICN 48 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~t~~ 48 (94)
-|...|..+|.+|.+.|+...|.++|+.+. +.|+.|+..+-.
T Consensus 94 ~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 94 YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 378899999999999999999999999885 468888776543
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=94.60 E-value=0.64 Score=30.08 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CchH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESD-KVNV--FICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
...+..+-..+...|++++|...+++.....- .|+. ..|..+...+...|++++|+.++++..
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 34455556666677777777777666554211 1222 234456666777777777777777764
No 83
>PRK12370 invasion protein regulator; Provisional
Probab=94.53 E-value=1.1 Score=31.42 Aligned_cols=63 Identities=14% Similarity=-0.001 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVN-VFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
...+..+-..+...|++++|...+++..+.. |+ ...+..+...+...|++++|+..+++..+.
T Consensus 372 ~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 372 ADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 3445555555666666666666666655432 32 112222333344556666666666665443
No 84
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=94.47 E-value=0.27 Score=32.56 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=38.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 034447 16 IKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLT 76 (94)
Q Consensus 16 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 76 (94)
-.=|.+.|.++.|+++|..+.+.+. .-...--.|+.-|-...+|++|+++-+++.+.+-.
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 3445666777777777777765332 23345556677777777777777777777665433
No 85
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.47 E-value=0.14 Score=22.20 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSIT 36 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~ 36 (94)
+|+.|=..|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788899999999999999999854
No 86
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.33 E-value=0.63 Score=27.87 Aligned_cols=63 Identities=16% Similarity=0.237 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKV--NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..+..+-..|++.|+.++|.+.+.++.+....+ -+..+-.+|+.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 567789999999999999999999998776555 455678889999999999999998877654
No 87
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=94.30 E-value=0.83 Score=29.12 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
|....+.......+.|++..|...|.+.... -++|-..|+.+=-+|-+.|+.++|..-|.+..+-
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L 163 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALEL 163 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh
Confidence 3444555777788889999999999888753 3579999999999999999999999988887653
No 88
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=94.29 E-value=1.3 Score=31.33 Aligned_cols=61 Identities=18% Similarity=0.073 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.|..+-..+...|++++|...|++..+.. +-+...|..+-..+...|++++|+..|++..+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555555443321 11344445555555555555555555555443
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=94.20 E-value=0.74 Score=28.14 Aligned_cols=59 Identities=8% Similarity=0.135 Sum_probs=47.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC--CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 15 YIKFLGKNGNSLKALEIYNSITDES--DKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 15 ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+-..|.+.|++++|...+++..... -+.....+..+..++.+.|++++|...++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456778899999999999887542 2234678889999999999999999999988765
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=94.11 E-value=0.97 Score=29.20 Aligned_cols=78 Identities=9% Similarity=0.129 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFIC---NLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNT 84 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 84 (94)
+.......+..|.+.++++.|.+.++.|++.. .|.... .++++.+.....+.+|..+|+++.+. +.+++.+.+.
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng 206 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNG 206 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHH
Confidence 45566678889999999999999999998653 343322 23333333345799999999998554 5567777665
Q ss_pred HHHH
Q 034447 85 VYQS 88 (94)
Q Consensus 85 ll~~ 88 (94)
+..+
T Consensus 207 ~A~~ 210 (290)
T PF04733_consen 207 LAVC 210 (290)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 91
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=94.07 E-value=0.4 Score=33.80 Aligned_cols=59 Identities=15% Similarity=0.409 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDK 69 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~ 69 (94)
.+|..+|..--+..-+..|..+|.+..+.+..+ +++.++++|.-||. ++.+-|+++|+-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeL 426 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFEL 426 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHH
Confidence 457777777777778899999999999888777 88999999987764 566777776665
No 92
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.03 E-value=0.7 Score=30.32 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQSD 89 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 89 (94)
+.+..|.-+...|+...|.++-.+.+- ||..-|...|++++..++|++..++... .++ +.-|..++++|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv----~dkrfw~lki~aLa~~~~w~eL~~fa~s-kKs-----PIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKV----PDKRFWWLKIKALAENKDWDELEKFAKS-KKS-----PIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHHhcCCHHHHHHHHhC-CCC-----CCChHHHHHHH
Confidence 455567777778888888888777753 7888888888888888888887776543 222 24455555553
No 93
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=94.03 E-value=0.77 Score=30.54 Aligned_cols=58 Identities=14% Similarity=0.252 Sum_probs=46.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 16 IKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 16 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
=+.....|+++.|.+.|+...+.+-..-..+-..|..+|.+.|+.++...++.++.+.
T Consensus 221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 3456677899999999988887766666677888899999999999999888887664
No 94
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.99 E-value=1 Score=32.67 Aligned_cols=64 Identities=13% Similarity=-0.026 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+....+.+-.++.+.|++++|.++|++.... .+-+..++..+-.++-+.|+.++|...|++-.+
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555666666667776666666652 222355666666666666666666666666543
No 95
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.93 E-value=0.24 Score=21.54 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 45 FICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 45 ~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
.+++.+-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 466777777777777777777777754
No 96
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.88 E-value=1.1 Score=29.09 Aligned_cols=85 Identities=12% Similarity=0.097 Sum_probs=61.1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCchHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHcCCCcc
Q 034447 5 GKTSISSYSSYIKFLGKNGNSLKALEIYNSITDE-SDKVNVFICNLILSCLVRNGKFESSLKLFDK-----IKQSGLTPD 78 (94)
Q Consensus 5 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~p~ 78 (94)
+.++..+-..+|..+++.+++..-.++|+..... +-.-|...|...|+...+.|+..-..++.++ +.+.++..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~ 277 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVT 277 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCC
Confidence 3677777788888888888888888888877654 5556888888888888888888777766655 244556555
Q ss_pred HHHHHHHHHHh
Q 034447 79 AVTYNTVYQSD 89 (94)
Q Consensus 79 ~~~~~~ll~~~ 89 (94)
...-..+-+.+
T Consensus 278 ~~L~~~L~~LF 288 (292)
T PF13929_consen 278 DELRSQLSELF 288 (292)
T ss_pred HHHHHHHHHHH
Confidence 55555444433
No 97
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=1.1 Score=31.23 Aligned_cols=66 Identities=9% Similarity=0.027 Sum_probs=57.3
Q ss_pred Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 6 KT-SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 6 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+| |...|.+|=..|.+.+++++|..+|+.-...|-. +...+..|-+.|-+.++.++|.+.|++-.+
T Consensus 428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55 8899999999999999999999999988876542 668899999999999999999998877554
No 98
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.77 E-value=0.21 Score=33.01 Aligned_cols=50 Identities=8% Similarity=0.163 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 24 NSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 24 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+++++.-+...=...|+-||-++++.+|+.+.+.+++.+|.++.-.|...
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 45667766666667899999999999999999999999999987776554
No 99
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.68 E-value=0.27 Score=21.36 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITD 37 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 37 (94)
..+++.+-..|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 46889999999999999999999998764
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=93.64 E-value=0.95 Score=27.48 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 26 LKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 26 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
++|.+++++..+.. +-+..++..+-..+.+.|++++|+..|+++.+
T Consensus 127 ~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 127 PQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444443321 11344444444444555555555555555443
No 101
>PRK14574 hmsH outer membrane protein; Provisional
Probab=93.62 E-value=1.3 Score=32.76 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
-.|-++.+.|++.++.+-++.++..+.+....+--++.++|...+.+++|+.+|++....
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 456667778888888888888888777655557777888888888888888888887553
No 102
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=93.57 E-value=0.83 Score=26.62 Aligned_cols=65 Identities=15% Similarity=0.076 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV--NVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
...|..+...+...|++++|...|++.....-.+ ...+|..+-..+...|+.++|+..+++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556677777778899999999999887542222 2458888889999999999999999998764
No 103
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=93.51 E-value=1.8 Score=30.44 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=45.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 18 FLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 18 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
.+...|++++|.+.+++-.. .+.-...........+.+.|+.++|..+|..+.+.+ |+-..|-..+.
T Consensus 13 il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~ 79 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLE 79 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHH
Confidence 34677888888888876443 233445555666677788888888888888888776 55554444333
No 104
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.46 E-value=0.88 Score=26.52 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLT 76 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 76 (94)
+.......|+...+.|.-++..++.+++.. +-+++....-.+..+|.+-|+..++.+++.+.-+.|+.
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 345567888999999999999999999875 23467777778899999999999999999999999875
No 105
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=93.45 E-value=1.9 Score=32.91 Aligned_cols=64 Identities=8% Similarity=0.048 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
|...+..+...+.+.|++++|...++..... .| +...+..+...+...|++++|.+++++..+.
T Consensus 636 ~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 636 NADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 4556666677777777777777777765532 23 3445555666667777777777777776653
No 106
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.34 E-value=0.94 Score=31.56 Aligned_cols=59 Identities=10% Similarity=0.237 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDES-DKVNVFICNLILSCLVRNGKFESSLKLFDK 69 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 69 (94)
..|.+.|.+--+..-++.|..+|-+..+.| +.+++..++++|.-++ .|+...|.++|+-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifel 457 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFEL 457 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHH
Confidence 467788888888888999999999999888 6789999999998766 4667778888775
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=93.31 E-value=1.1 Score=27.21 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=54.4
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCC
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCL-VRNGK--FESSLKLFDKIKQSGL 75 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~-~~~g~--~~~a~~~~~~m~~~g~ 75 (94)
.|...|..+-..|...|++++|...|++..+.. +-|...+..+-.++ ...|+ .++|.+++++..+.+-
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP 141 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA 141 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 477788888899999999999999999887643 23777777777764 67776 5999999999887653
No 108
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.24 E-value=1.2 Score=28.43 Aligned_cols=63 Identities=10% Similarity=0.138 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNV----FICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
...|...+....+.|++++|...|+.+...- |+. ..+-.+-..|...|++++|...|+++.+.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~ 209 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN 209 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5668888877788899999999999987531 332 35556778889999999999999999754
No 109
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=93.13 E-value=0.22 Score=36.97 Aligned_cols=70 Identities=10% Similarity=0.248 Sum_probs=48.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHH
Q 034447 18 FLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS-GLTPDAVTYNTVYQS 88 (94)
Q Consensus 18 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~ 88 (94)
.++..|++..|..||.+..+... -+.-+|--+-.+|...|++..|+++|+.-.++ ....+...-..|-++
T Consensus 655 VLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 655 VLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 45667888888888888876532 23456777788888888888888888875554 334455555555555
No 110
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=92.97 E-value=0.48 Score=22.15 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=17.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 56 RNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 56 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+.|-..++...+++|.+.|+..+...|..+++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44555555555666655555555555555443
No 111
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.95 E-value=0.72 Score=24.13 Aligned_cols=55 Identities=11% Similarity=0.254 Sum_probs=41.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHHhcCCHHHHHHHH-HHH
Q 034447 15 YIKFLGKNGNSLKALEIYNSITDESDKV--NVFICNLILSCLVRNGKFESSLKLF-DKI 70 (94)
Q Consensus 15 ll~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~t~~~li~~~~~~g~~~~a~~~~-~~m 70 (94)
-|..| ...+-++|..+|+.-.+.-..| --.++..++.+|+..|++++++.+- .+|
T Consensus 13 GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 13 GLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45545 7788899999999887554333 3467889999999999999998863 444
No 112
>PRK14574 hmsH outer membrane protein; Provisional
Probab=92.85 E-value=0.97 Score=33.43 Aligned_cols=62 Identities=8% Similarity=0.010 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDES-----DKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.--++-++|...+.+++|..++.+..... ..++......|.-+|...+++++|..+++++.+
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 55678899999999999999999986532 234666678999999999999999999999987
No 113
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.80 E-value=0.49 Score=21.81 Aligned_cols=25 Identities=16% Similarity=0.478 Sum_probs=15.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 50 ILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 50 li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+..+|...|+.+.|..++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 3456666666666666666665443
No 114
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=92.76 E-value=1.6 Score=33.39 Aligned_cols=65 Identities=11% Similarity=0.105 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...+..+-..+.+.|++++|...|++..+.. +-+...+..+...+...|+.++|++.+++..+.
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 34455667777888899999999999887642 236788888999999999999999999987653
No 115
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=92.74 E-value=1.8 Score=28.06 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
....+-..+...|++++|...+++..+.. +.+...+..+-..+...|++++|...+++..+.
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 33445567788999999999999998753 345677888888999999999999999987664
No 116
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.70 E-value=0.93 Score=24.77 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHH
Q 034447 24 NSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS-GLTPDAVTYNTVYQS 88 (94)
Q Consensus 24 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~ 88 (94)
+..+..+-++.+....+-|+.....+.+++|-+..++.-|.++|+-.+.+ |- +...|..+++-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence 66777888888888889999999999999999999999999999987633 32 34456666653
No 117
>PRK11189 lipoprotein NlpI; Provisional
Probab=92.66 E-value=1.8 Score=27.86 Aligned_cols=63 Identities=13% Similarity=0.050 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
..|..+=..|.+.|+.++|...|++..+.. +-+...|+.+-..+...|++++|...|++..+.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 127 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL 127 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 446666667888999999999999887642 236789999999999999999999999998764
No 118
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=92.49 E-value=1.4 Score=26.41 Aligned_cols=60 Identities=5% Similarity=-0.072 Sum_probs=43.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh-hCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 14 SYIKFLGKNGNSLKALEIYNSIT-DESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
..+.......+.+......+-.+ .....|+..+|..++..+...|+.++|.+..+++..-
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33333345555555555544443 2345799999999999999999999999999988653
No 119
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=92.37 E-value=3.9 Score=31.09 Aligned_cols=52 Identities=10% Similarity=-0.019 Sum_probs=27.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 20 GKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 20 ~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
.+.|++++|...|++.... +|+...+..+...+.+.|+.++|...+++..+.
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4566666666666655432 233333444444555566666666666555543
No 120
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.35 E-value=0.54 Score=21.17 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDE 38 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 38 (94)
++..+-.+|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5677888999999999999999999864
No 121
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=92.31 E-value=3.4 Score=30.26 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+..+...+.+.|++++|...+++..+. .+.+.. +..+...+...|+.++|+..+++..+
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444555555555555555555433 111333 55555555555555555555555544
No 122
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.28 E-value=1.1 Score=24.69 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=48.6
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHH
Q 034447 15 YIKFLG-KNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS-GLTPDAVTYNTVYQ 87 (94)
Q Consensus 15 ll~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~ 87 (94)
....+- ..-+..+..+-++.+....+-|+.....+.+++|-+..++..|.++|+-.+.+ |-.-+ .|.-+++
T Consensus 15 y~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~lq 87 (108)
T PF02284_consen 15 YEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYILQ 87 (108)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHHH
T ss_pred HHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHHH
Confidence 333344 23456677888888888899999999999999999999999999999988754 32222 5666665
No 123
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.28 E-value=2.3 Score=28.25 Aligned_cols=70 Identities=14% Similarity=0.046 Sum_probs=51.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 17 KFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 17 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
..+...|++++|...|++..+.. +-+...|..+..+|.+.|++++|+..+++..+..- .+...|..+-.+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~ 79 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTA 79 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHH
Confidence 34556799999999999998642 23677888888999999999999999999877532 234445444333
No 124
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=92.16 E-value=0.65 Score=21.70 Aligned_cols=37 Identities=8% Similarity=0.141 Sum_probs=31.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 034447 16 IKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILS 52 (94)
Q Consensus 16 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 52 (94)
|...-+.|..+++..++++|.+.|+..+...|..+++
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 4445678899999999999999999998888887765
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=92.07 E-value=2.1 Score=27.36 Aligned_cols=79 Identities=18% Similarity=0.085 Sum_probs=63.2
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNT 84 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 84 (94)
.+|...||.+=-+|-+.|+++.|..-|.+-.+. .| +....|-+--.+.-.|+.++|..++..-...+-....+--|.
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NL 208 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNL 208 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 578899999999999999999999988777653 33 566777888888899999999999999887776555555554
Q ss_pred HH
Q 034447 85 VY 86 (94)
Q Consensus 85 ll 86 (94)
.+
T Consensus 209 Al 210 (257)
T COG5010 209 AL 210 (257)
T ss_pred HH
Confidence 43
No 126
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.02 E-value=2.4 Score=30.17 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHhhccc
Q 034447 25 SLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTP-DAVTYNTVYQSDHITW 93 (94)
Q Consensus 25 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~ 93 (94)
.+.....+++....-..--..+|...++.--+...++.|..+|.+.++.+..+ ..+.++++++-+|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD 416 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKD 416 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCC
Confidence 45566667766654333344678888999999999999999999999999888 8999999999877653
No 127
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.98 E-value=1.6 Score=25.73 Aligned_cols=53 Identities=8% Similarity=0.229 Sum_probs=41.1
Q ss_pred hcCCHHHHHHHHHHHhh-CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 034447 21 KNGNSLKALEIYNSITD-ESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 21 ~~g~~~~a~~~~~~m~~-~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 75 (94)
...+++++..+++.|.- +.-.|...+|-..+. ...|+|.+|.++|++..+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~--i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLL--IARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHH--HHcCCHHHHHHHHHhhhccCC
Confidence 47889999999999873 223345666766665 789999999999999988764
No 128
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=91.91 E-value=3.8 Score=30.01 Aligned_cols=65 Identities=9% Similarity=0.090 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...+..+-.++.+.|++++|..+|++..... +.+...+..+...+...|++++|...+++..+.
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~ 112 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG 112 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44567788888888999999999998876541 234566778888888999999999999988765
No 129
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=91.91 E-value=0.8 Score=22.21 Aligned_cols=42 Identities=12% Similarity=0.031 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLIL 51 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li 51 (94)
|...+-.+..+|.+.|++++|..+++..... .|+-..|..++
T Consensus 24 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 24 NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 6667778999999999999999999998865 36645555443
No 130
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.88 E-value=1.3 Score=24.48 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=32.8
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILS 52 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 52 (94)
.|+.....+.|++|-+..++..|.++|+..+... .+....|..++.
T Consensus 42 VP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 42 VPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp ---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 6889999999999999999999999999888431 122227777665
No 131
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.72 E-value=3.2 Score=31.03 Aligned_cols=60 Identities=15% Similarity=0.324 Sum_probs=40.1
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 13 SSYIKFLG--KNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 13 ~~ll~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
...+.++. +.|..++|..+++.....+-. |..|..++-.+|-..++.++|..+|++..+.
T Consensus 45 a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~ 106 (932)
T KOG2053|consen 45 AKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK 106 (932)
T ss_pred HHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 33444443 567777777777776654443 7777777777777777777777777776543
No 132
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.71 E-value=1.6 Score=25.36 Aligned_cols=80 Identities=13% Similarity=0.175 Sum_probs=54.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHH
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDE-SDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSG-LTPDAVTYN 83 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~ 83 (94)
|....|+.-..+ .+.|++++|.+.|+.+..+ ...| ....---++.+|.+.+++++|...+++..+-. -.|+ +-|.
T Consensus 9 ~~~~ly~~a~~~-l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEA-LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYA 86 (142)
T ss_pred CHHHHHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHH
Confidence 444455544443 4679999999999999864 1111 34555668899999999999999999988753 3333 3344
Q ss_pred HHHHH
Q 034447 84 TVYQS 88 (94)
Q Consensus 84 ~ll~~ 88 (94)
-...|
T Consensus 87 ~Y~~g 91 (142)
T PF13512_consen 87 YYMRG 91 (142)
T ss_pred HHHHH
Confidence 44444
No 133
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=91.68 E-value=1.8 Score=25.66 Aligned_cols=56 Identities=9% Similarity=0.026 Sum_probs=36.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 17 KFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 17 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
..+...|++++|..+|+...... | +..-|-.|--++-..|++++|+..|.....-.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~ 99 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK 99 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34456788888888888776532 4 44444445555556678888888887766544
No 134
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.65 E-value=0.8 Score=31.01 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=34.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 15 YIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 15 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
+-.+++..|++.+|+++|-....-.++-+..-...+.++|.+.++++-|.+++=.+
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 45667777777777777755554444333444444556677777777777665444
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=91.39 E-value=3.6 Score=28.67 Aligned_cols=80 Identities=11% Similarity=0.109 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVN-VFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVY 86 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 86 (94)
|........+.+.+.++.++|.+-++.+... .|+ ...+-.+-.++.+.|++.+|++++++-.... +-|+..|..|-
T Consensus 339 N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LA 415 (484)
T COG4783 339 NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLA 415 (484)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHH
Confidence 4444556667788888889998888888764 465 5556666778888888888888888876543 34667777777
Q ss_pred HHhh
Q 034447 87 QSDH 90 (94)
Q Consensus 87 ~~~~ 90 (94)
++|.
T Consensus 416 qay~ 419 (484)
T COG4783 416 QAYA 419 (484)
T ss_pred HHHH
Confidence 7754
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=91.38 E-value=2.7 Score=28.55 Aligned_cols=56 Identities=13% Similarity=0.261 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 13 SSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 13 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..|+..+...++++.|..+|+++.+.. |+. ...+++.+...++-.+|.+++++..+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~ 228 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALK 228 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 355666666788888888888887654 443 33456666666666666666666554
No 137
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=91.35 E-value=2.6 Score=27.00 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 23 GNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 23 g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
++.+.|..+|+...+. +..+...|..-++-+...++.+.|..+|++....
T Consensus 50 ~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 50 KDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS 99 (280)
T ss_dssp S-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT
T ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 4445566666655432 3345555556666666666666666666665443
No 138
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.13 E-value=1.9 Score=30.51 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=54.3
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
++|...++.|=-.|--.|+++.|.++|+.... ++| |...||-|=...+...+.++|+..|++-.+-
T Consensus 427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL 493 (579)
T ss_pred CCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence 45666666666667778999999999998775 356 8999999988899999999999999997653
No 139
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.05 E-value=3 Score=27.25 Aligned_cols=77 Identities=10% Similarity=0.079 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
.-++++..+--.|++.-....+++..+..-+-+..--..+.+.--+.|+.+.|...|++..+..-..|..+++.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 34566666666788888888888888765556777778888888899999999999998887655566666665553
No 140
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=91.03 E-value=2.7 Score=31.30 Aligned_cols=66 Identities=20% Similarity=0.410 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+.-.|.-+-.+|.+.|.+.+|.++|........--+...|--+-++|-..|..++|.+.|+.....
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445677888999999999999999999988766667889999999999999999999999887653
No 141
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.01 E-value=3.5 Score=27.81 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=18.6
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSIT 36 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 36 (94)
.|-..||-.|-++|-+...+..|..+|.+-.
T Consensus 253 ~~~~dTfllLskvY~ridQP~~AL~~~~~gl 283 (478)
T KOG1129|consen 253 FPHPDTFLLLSKVYQRIDQPERALLVIGEGL 283 (478)
T ss_pred CCchhHHHHHHHHHHHhccHHHHHHHHhhhh
Confidence 4555566666666666666666666555443
No 142
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.95 E-value=1.6 Score=23.92 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=36.6
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCchHHHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITD-ESDKVNVFICNLILS 52 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~t~~~li~ 52 (94)
.|+....++.|++|-+..++..|.++|+..+. .|. +...|..++.
T Consensus 39 VP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 39 VPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 58888999999999999999999999998873 332 4556777665
No 143
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=90.92 E-value=1.7 Score=24.05 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=47.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNT 84 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 84 (94)
+-+..+...|++++|..+.+.+. .||...|-++-. .+.|..++...-+.+|..+|- |....|..
T Consensus 44 IRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg~-p~lq~Faa 107 (115)
T TIGR02508 44 IRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASGD-PRLQTFVA 107 (115)
T ss_pred HHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 44566778888888888887773 599999988766 677888888888888887774 55555543
No 144
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=90.92 E-value=1.1 Score=22.05 Aligned_cols=48 Identities=13% Similarity=0.253 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 24 NSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 24 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
.+++..++++.++.. +.|..-.--+|.++.+.|++++|.+.++++.+.
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 455666677766532 468888888999999999999999999888653
No 145
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=90.58 E-value=2.6 Score=25.70 Aligned_cols=67 Identities=7% Similarity=0.039 Sum_probs=52.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDES-DKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
.....+-.+...+.+.|++++|...|++..... -.| ...++..+-.++.+.|++++|+..+++..+.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 355667777788899999999999999887532 111 1246777888999999999999999999764
No 146
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.41 E-value=0.57 Score=32.57 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHhhccc
Q 034447 43 NVFICNLILSCLVRNGKFESSLKLFDKIKQSG-LTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 43 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~ 93 (94)
=..+|++.|+..-+...++.|..+|-+.++.| +.++.+.++++++-++.|+
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d 447 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGD 447 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCC
Confidence 35789999999999999999999999999999 5689999999999887764
No 147
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=90.38 E-value=2.3 Score=24.74 Aligned_cols=61 Identities=20% Similarity=0.092 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH-------hcCCHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLV-------RNGKFESSLKLFDKI 70 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~-------~~g~~~~a~~~~~~m 70 (94)
..+|..+-..+...|++++|...++...... +....++..+...+. ..|+++.|...+++-
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 3478888889999999999999999887542 224556666666676 788888776666543
No 148
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.31 E-value=5.1 Score=28.61 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
..+++.|=++|-+.+.+++|...+++-.... +-|..+|.++--.|...|+++.|++.|.+-. .+.|+-.+-..+|..
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKL 531 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHH
Confidence 3457777788889999999999999876542 3488999999999999999999999998754 345777777766654
No 149
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.25 E-value=0.68 Score=18.45 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 034447 49 LILSCLVRNGKFESSLKLFD 68 (94)
Q Consensus 49 ~li~~~~~~g~~~~a~~~~~ 68 (94)
.+-..+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34444555555555555543
No 150
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=90.25 E-value=3.6 Score=28.91 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CchHHH-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDE-----SD-KVNVFI-CNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~~~t-~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.+..-+-..|...|+++.|..+++.-.+. |. .|.+.+ -+.+-..|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44455889999999999999999877643 21 233333 33466778899999999999999854
No 151
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=90.01 E-value=1.4 Score=28.85 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=34.6
Q ss_pred CchHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 41 KVNVFI-CNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 41 ~p~~~t-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
.||..+ |+..|..-.+.||+++|++++++-.+.|+.--..+|-.-++
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 354444 56888888888888888888888888888766666654443
No 152
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.63 E-value=5.2 Score=28.31 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=46.8
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.|+...|++.++.=.+-.+.+.|..+++...-. .|++.+|--..+==-++|.+..+.++|+...+
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 677777888887777777778888887777653 37777777666666677777777777766543
No 153
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.28 E-value=3.1 Score=24.70 Aligned_cols=56 Identities=11% Similarity=0.239 Sum_probs=40.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhh-CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 17 KFLGKNGNSLKALEIYNSITD-ESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 17 ~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
..-.+.++.+++..+++.+.- +.-.|...++-.++. ...|+|.+|+++|+++....
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~--i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLH--IVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHH--HHhCCHHHHHHHHHHHhccC
Confidence 333456889999999998874 222345556666554 78899999999999987654
No 154
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=89.15 E-value=6.1 Score=27.84 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC------CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 13 SSYIKFLGKNGNSLKALEIYNSITDE------SDKV-NVFICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 13 ~~ll~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
+.+-..|...+.+.+|..+|+++..- ...| -..+++.|-..|.+.|++++|...+++-
T Consensus 245 ~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 245 NILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 34667888899999999999998641 1123 4567777888899999999999877764
No 155
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.11 E-value=0.69 Score=18.89 Aligned_cols=24 Identities=13% Similarity=0.616 Sum_probs=16.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 50 ILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 50 li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+-.++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 345566778888888888877654
No 156
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=89.08 E-value=0.51 Score=27.25 Aligned_cols=31 Identities=19% Similarity=0.458 Sum_probs=22.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh
Q 034447 57 NGKFESSLKLFDKIKQSGLTPDAVTYNTVYQSD 89 (94)
Q Consensus 57 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 89 (94)
.|.-.+|..+|++|.++|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34555677888888888888864 66777654
No 157
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.02 E-value=5.3 Score=26.97 Aligned_cols=67 Identities=19% Similarity=0.031 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 034447 13 SSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYN 83 (94)
Q Consensus 13 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 83 (94)
+.+=+.|.+.|.+.+|.+-++.-.+. .|-.-||-.|-+.|-+-..++.|+.++.+-.++ .|..+||-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l 293 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYL 293 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhh
Confidence 45667888999999999999876654 477888999999999999999999999876543 46666663
No 158
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.96 E-value=4.9 Score=29.43 Aligned_cols=63 Identities=22% Similarity=0.298 Sum_probs=54.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
-..+|..+-..+-..|++++|...++.+.+. +| .+-.|.-+-.++...|+.+.|.+.|.+-.+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alq 178 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQ 178 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh
Confidence 3578888999999999999999999999864 45 778899999999999999999998877655
No 159
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=88.91 E-value=5.5 Score=26.97 Aligned_cols=76 Identities=13% Similarity=0.044 Sum_probs=52.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDK---VNVFICNLILSCLVR---NGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~---p~~~t~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
.++.+|-...+++...++++.+...... -....---..-++-+ .|+.++|++++.........+++.+|..+=.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 5666788999999999999999875211 111111122334455 8999999999999766666677788876654
Q ss_pred Hh
Q 034447 88 SD 89 (94)
Q Consensus 88 ~~ 89 (94)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
No 160
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=88.37 E-value=2.5 Score=27.98 Aligned_cols=58 Identities=9% Similarity=0.153 Sum_probs=45.8
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhc
Q 034447 29 LEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQSDHI 91 (94)
Q Consensus 29 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 91 (94)
.++|+.|++.++.|..++|--+.-.+.+.=...+++.+++.+..+... |..|+..||+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHH
Confidence 568888888899999998888888888888999999999998765333 6666666553
No 161
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=88.29 E-value=3.2 Score=23.58 Aligned_cols=68 Identities=12% Similarity=0.203 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESD--KVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTP 77 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 77 (94)
...|..++..+. .++...+...++.+....= .......-.+-..+...|++++|...|+......-.|
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~ 81 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP 81 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH
Confidence 356777777774 8889999999999886421 1122333345577889999999999999999877333
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=88.28 E-value=4.9 Score=25.66 Aligned_cols=84 Identities=11% Similarity=0.141 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----CchHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCc--cH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESD-----KVNVFI-CNLILSCLVRNGKFESSLKLFDKIKQS--GLTP--DA 79 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~t-~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p--~~ 79 (94)
..+.-+...+.+.|++++|.++|++...... ++++.. |-..+-++...|++..|.+.+++.... ++.. ..
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 4566778889999999999999998865332 344443 233444777789999999999998754 3432 35
Q ss_pred HHHHHHHHHhhccc
Q 034447 80 VTYNTVYQSDHITW 93 (94)
Q Consensus 80 ~~~~~ll~~~~~~~ 93 (94)
..-..||+++-.|+
T Consensus 236 ~~~~~l~~A~~~~D 249 (282)
T PF14938_consen 236 KFLEDLLEAYEEGD 249 (282)
T ss_dssp HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhCC
Confidence 55666777776554
No 163
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.05 E-value=7.4 Score=27.48 Aligned_cols=67 Identities=15% Similarity=0.255 Sum_probs=49.7
Q ss_pred HhcCCHHHHHHHHHHHhh-CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CccHHHHHHHH
Q 034447 20 GKNGNSLKALEIYNSITD-ESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGL-TPDAVTYNTVY 86 (94)
Q Consensus 20 ~~~g~~~~a~~~~~~m~~-~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll 86 (94)
-+.|+.++|.+.|++|.+ ....-+....-.||.++-..+.+.++..++.+=.+... ..-..+|+..+
T Consensus 270 rklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 270 RKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 367999999999999964 33333567888899999999999999999988643222 22345666655
No 164
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.93 E-value=1.3 Score=32.85 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
|..+-+.|+..|+++.|.++|-+- ..++-.|..|.+.|+|++|+++-++.
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHh
Confidence 455666777777777777777432 23566678888888888887765543
No 165
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=87.84 E-value=6.7 Score=26.72 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=58.8
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAV 80 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 80 (94)
.++...+-..-......|+.+.|..-+++..+.+ +.+...-....++|.+.|++.....++..|.+.|.-.++.
T Consensus 150 ~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e 223 (400)
T COG3071 150 DDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE 223 (400)
T ss_pred CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH
Confidence 4555666677777778888888888887776543 2377888999999999999999999999999998765543
No 166
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.76 E-value=3.4 Score=29.15 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 034447 22 NGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYN 83 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 83 (94)
.|+...|.++|+...+. .|+...|++.|+-=.+-..++.|..++++..-- +|+..+|-
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wi 211 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWI 211 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHH
Confidence 36666677777666543 578888888887777777788888888776543 36666653
No 167
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=87.75 E-value=4.4 Score=24.55 Aligned_cols=57 Identities=9% Similarity=0.234 Sum_probs=41.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhC--CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 17 KFLGKNGNSLKALEIYNSITDE--SDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 17 ~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
..+.+.|++.+|...|+++... +-+.-....-.+..++.+.|+++.|...++++.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456789999999999999853 11123344556788899999999999999998764
No 168
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.56 E-value=1.3 Score=18.33 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 45 FICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 45 ~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.+|..+-..|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566777778888888888888877654
No 169
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=87.52 E-value=0.67 Score=26.77 Aligned_cols=31 Identities=10% Similarity=0.238 Sum_probs=24.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 034447 22 NGNSLKALEIYNSITDESDKVNVFICNLILSCL 54 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 54 (94)
.|.-.+|-.+|.+|..+|-+|| .|+.|+...
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3555788999999999999997 477777654
No 170
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.43 E-value=3.9 Score=26.67 Aligned_cols=80 Identities=10% Similarity=0.196 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---Cc
Q 034447 9 ISSYSSYIKFLGK--NGNSLKALEIYNSITDESDKVNVFICNLILSCLVR--NG----KFESSLKLFDKIKQSGL---TP 77 (94)
Q Consensus 9 ~~~~~~ll~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~--~g----~~~~a~~~~~~m~~~g~---~p 77 (94)
..++.++|..... ...+++...+++.|.+.|++-+.++|-+..--... .. ...++..+|+.|++... .+
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 3444444444443 12356677889999999999988888773332222 22 44567889999988642 35
Q ss_pred cHHHHHHHHHH
Q 034447 78 DAVTYNTVYQS 88 (94)
Q Consensus 78 ~~~~~~~ll~~ 88 (94)
+-+++.+++..
T Consensus 140 ~D~~~a~lLA~ 150 (297)
T PF13170_consen 140 EDYPFAALLAM 150 (297)
T ss_pred cchhHHHHHhc
Confidence 66677776654
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.32 E-value=6.3 Score=25.86 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=60.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTV 85 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 85 (94)
-|.+-|..--.+|++.|.++.|++=-+.-.. +-| -..+|..|=.+|...|++++|++.|++-.. +.|+..+|..=
T Consensus 113 ~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~n 188 (304)
T KOG0553|consen 113 TNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSN 188 (304)
T ss_pred CcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHH
Confidence 3778888899999999999998775554443 234 567888888999999999999999887654 56887788766
Q ss_pred HHH
Q 034447 86 YQS 88 (94)
Q Consensus 86 l~~ 88 (94)
|+.
T Consensus 189 L~~ 191 (304)
T KOG0553|consen 189 LKI 191 (304)
T ss_pred HHH
Confidence 654
No 172
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=87.02 E-value=2.6 Score=21.04 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 44 VFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 44 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..+|+.+-..|...|++++|+..|++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788889999999999999999998764
No 173
>PRK15331 chaperone protein SicA; Provisional
Probab=86.84 E-value=4.6 Score=24.15 Aligned_cols=51 Identities=10% Similarity=-0.039 Sum_probs=38.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 20 GKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 20 ~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
-..|++++|..+|.-+...+. -|..-|..|-.++-..+.+++|+..|....
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~ 98 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAF 98 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999998875432 244456777777777889999999887643
No 174
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=86.59 E-value=11 Score=27.73 Aligned_cols=65 Identities=8% Similarity=-0.023 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+......+...+.+.+.+++|....+..... .| +....+.+-.++.+.|+.++|+.+|++....+
T Consensus 119 ~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~ 184 (694)
T PRK15179 119 SSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQADACFERLSRQH 184 (694)
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 3445556677777888888888888877754 25 56666677777788899999999999988743
No 175
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.42 E-value=1.1 Score=19.17 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHhcCCHHHHH
Q 034447 43 NVFICNLILSCLVRNGKFESSL 64 (94)
Q Consensus 43 ~~~t~~~li~~~~~~g~~~~a~ 64 (94)
|...|+-+-..|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 6677777777777777777764
No 176
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=86.36 E-value=3.5 Score=27.17 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=41.0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDK 69 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 69 (94)
.||...|-..+.++++.++|++-..+-.. ++ ...-|-..+..|.+.|+..+|..+..+
T Consensus 205 v~dkrfw~lki~aLa~~~~w~eL~~fa~s-kK-----sPIGyepFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 205 VPDKRFWWLKIKALAENKDWDELEKFAKS-KK-----SPIGYEPFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-CC-----CCCChHHHHHHHHHCCCHHHHHHHHHh
Confidence 67888888999999999999887776543 21 225566666777777777777666655
No 177
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=86.30 E-value=6.3 Score=29.89 Aligned_cols=79 Identities=11% Similarity=0.170 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDE-SDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
-+|-.+-+.|...|++..|+++|+...+. .-.-+...-+.|-+++-+.|.+.+|.+.+-.-......-..+-||..+-.
T Consensus 681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 45667788899999999999999976543 33347888899999999999999999988776665544455667776654
No 178
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=86.29 E-value=3.3 Score=27.13 Aligned_cols=44 Identities=18% Similarity=0.086 Sum_probs=35.7
Q ss_pred CccH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHH
Q 034447 6 KTSI-SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNL 49 (94)
Q Consensus 6 ~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ 49 (94)
.||. .-||..|....+.|++++|..+++|-++.|++--..+|--
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3444 4568999999999999999999999999998765555543
No 179
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.56 E-value=6 Score=25.70 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCchHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITD-----ESDKVNVFICNLILSCL 54 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~t~~~li~~~ 54 (94)
|...|..+|.+|.+.|+...|...++.+.+ .|+.|...+........
T Consensus 186 ~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~~ 237 (280)
T COG3629 186 DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEIL 237 (280)
T ss_pred chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHh
Confidence 778899999999999999999999998864 79999999888887773
No 180
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.54 E-value=8.1 Score=25.39 Aligned_cols=71 Identities=14% Similarity=0.116 Sum_probs=51.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH-hhcc
Q 034447 19 LGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS-DHIT 92 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~ 92 (94)
..+.+++++|+..|.+-... .| |.+-|.--..+|.+.|.++.|++=.+.-..-+- --+.+|..|=.+ ++.|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccC
Confidence 45678999999999988763 45 889999999999999999999887666544221 134555555555 4443
No 181
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=85.14 E-value=11 Score=26.56 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=47.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CC-ccHHHHHHHH
Q 034447 17 KFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG-LT-PDAVTYNTVY 86 (94)
Q Consensus 17 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~-p~~~~~~~ll 86 (94)
.++-+....+++..=.+.....|++-+...-+-...+.-...+++.|+.+|++..+.. .. -|..+|+.++
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L 306 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH
Confidence 3444555667777777777777886555555555555567789999999999998763 22 3666776655
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=85.13 E-value=7.3 Score=24.51 Aligned_cols=56 Identities=9% Similarity=0.088 Sum_probs=41.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCchHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 17 KFLGKNGNSLKALEIYNSITDESDKVNVFIC---NLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 17 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~---~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
..+.+.|++++|.+.|++....--. +...- -.+..++.+.+++++|...+++..+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3345679999999999999864211 22222 24567788999999999999998775
No 183
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=85.10 E-value=4.2 Score=21.69 Aligned_cols=66 Identities=11% Similarity=0.124 Sum_probs=50.3
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
.|+...|..-++...... .+=.++|+-.+..|+..|...|-++++-..-.=.++...++++.|...
T Consensus 7 ~~~~~~~k~~~~rk~~Ls--~eE~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 7 SPTAQVYKYSLRRKKVLS--AEEVELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred CChHHHHHHHHHHHhccC--HHHHHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 455566665554333222 344489999999999999999999999888888999999999999653
No 184
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=85.09 E-value=5.5 Score=23.04 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 24 NSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 24 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+..+..+.++.+....+-|+.....+-+++|-+..++..|.++|+-.+.+ +.+....|-.+++
T Consensus 64 D~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 64 DGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred hHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 34566667777788889999999999999999999999999999988644 2233334555554
No 185
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=84.98 E-value=14 Score=28.11 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 13 SSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 13 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
-.+-.+|-+.|+.+++..+|++..+.. +-|..+-|-+...|+.. +.++|.+++.+...
T Consensus 120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 120 RTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 344555666699999999999999876 45899999999999999 99999988777644
No 186
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=84.41 E-value=1.8 Score=24.54 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=13.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCchHHHHH
Q 034447 22 NGNSLKALEIYNSITDESDKVNVFICN 48 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~~~~~p~~~t~~ 48 (94)
.|+.+.+.++++.++..|+.|....|.
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 355555556666665555555555444
No 187
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=84.35 E-value=12 Score=26.26 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=47.6
Q ss_pred Ccc-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 034447 6 KTS-ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDK 69 (94)
Q Consensus 6 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 69 (94)
.|+ ....-.+=.++.+.|.+.+|..+++.-... .+-|...|..|-.+|...|+..++..-..+
T Consensus 370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 354 444556678889999999999999888754 355899999999999888877766654433
No 188
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.33 E-value=8.4 Score=24.54 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCccHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ--SGLTPDAVTYNTVYQS 88 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~~~~~ll~~ 88 (94)
|.+..+..+.+.+.++++....++-.+.. +-|..+-.-++.-+|-.|+|++|..=++-..+ -...+....|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44566777888888999988777665432 23777777889999999999999865444322 2344667778888776
No 189
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.31 E-value=5.2 Score=23.40 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=43.3
Q ss_pred CccHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhc
Q 034447 6 KTSISSYSSYIKFLGKNGN-SLKALEIYNSITDESDKVNVFICNLILSCLVRN 57 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 57 (94)
..+..+|.+++.+.++... --.+..+|+-|++.+.+++..-|..+|.++.+-
T Consensus 76 ~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 76 WLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred hcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 3466789999999987776 455677999999988999999999999987665
No 190
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=83.83 E-value=3.2 Score=30.39 Aligned_cols=66 Identities=11% Similarity=0.138 Sum_probs=52.6
Q ss_pred Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 6 KT-SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 6 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.| +...||.+-.+|.+.+.-.+|...+.+-.+.+ .-+-..|-.-+-...+-|.+++|++.+.++..
T Consensus 549 ~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 549 EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 45 66889999999999999999999999888766 34445555556667888999999999988754
No 191
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.33 E-value=14 Score=26.23 Aligned_cols=81 Identities=11% Similarity=0.128 Sum_probs=62.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
|.....-|-+.|-+.|+-.+|.+++-+--+ =++-|+.|...|-.-|....-++++++.|++-. -++|+..-|..+|.
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmia 667 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIA 667 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHH
Confidence 666777778888888888888887655442 244588888888888888888999999998753 46799999999998
Q ss_pred Hhhc
Q 034447 88 SDHI 91 (94)
Q Consensus 88 ~~~~ 91 (94)
.|.+
T Consensus 668 sc~r 671 (840)
T KOG2003|consen 668 SCFR 671 (840)
T ss_pred HHHH
Confidence 8643
No 192
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=82.67 E-value=18 Score=27.00 Aligned_cols=75 Identities=27% Similarity=0.409 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC--CCCchHHHHHHHHHHHHhcCCHHH--HHH-HHHHHHHcCCCccHHHHHHHHHH
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDE--SDKVNVFICNLILSCLVRNGKFES--SLK-LFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~t~~~li~~~~~~g~~~~--a~~-~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
+|+.+|..+|++..+.++++.+... |-+.=...||-.|+.+.+.|.++- ... .-+.+.+.-+.-|..||..++++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 7999999999999999999998753 444556778888999999997642 111 12223333456688999988876
No 193
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=82.61 E-value=7.9 Score=22.96 Aligned_cols=61 Identities=7% Similarity=-0.050 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
|-.|=..+-..|++++|...|........ -|...+-.+-.++...|+.+.|.+.|+.-...
T Consensus 72 ~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 72 WFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444445567999999999999887663 47788888899999999999999999986653
No 194
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.48 E-value=5.9 Score=26.45 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITD-ESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 75 (94)
+.+-+..=....+.|+.+.|.+-|++-.+ .|+.| ...||..+. ..+.|+...|++...++.+.|+
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence 33344444445678999999998887654 45544 567887654 4567888899988888777665
No 195
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=82.02 E-value=20 Score=27.19 Aligned_cols=82 Identities=11% Similarity=0.058 Sum_probs=62.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVY 86 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 86 (94)
-|..|...+-..|-+.+..+++..+|+.... .-|+..--..+.-+|.+.+++.+-.++-=+|.+ .++-+.+.|.+++
T Consensus 75 ~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~ 151 (932)
T KOG2053|consen 75 TDDLTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVI 151 (932)
T ss_pred CchHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHH
Confidence 3788999999999999999999999998764 347877778888888888877665555444443 3445678888888
Q ss_pred HHhhc
Q 034447 87 QSDHI 91 (94)
Q Consensus 87 ~~~~~ 91 (94)
+....
T Consensus 152 Slilq 156 (932)
T KOG2053|consen 152 SLILQ 156 (932)
T ss_pred HHHHH
Confidence 76443
No 196
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.92 E-value=2.7 Score=17.13 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 46 ICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 46 t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.|..+-..+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345556677778888888888877654
No 197
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.68 E-value=5 Score=24.04 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=30.4
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDE 38 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 38 (94)
.|+...|..++.++...|+.++|.+...++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 699999999999999999999999999988753
No 198
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=81.57 E-value=6.5 Score=21.27 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCc
Q 034447 13 SSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNG--KFESSLKLFDKIKQSGLTP 77 (94)
Q Consensus 13 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p 77 (94)
..+|.-|...|+.++|...++++.... ........++..+...+ .-+-+..++.++.+.+..+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~ 70 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLIS 70 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCC
Confidence 456677778899999999999875431 22233334444444442 2334556667777666543
No 199
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=81.56 E-value=11 Score=24.02 Aligned_cols=64 Identities=14% Similarity=0.297 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHhh----CCCC-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 11 SYSSYIKFLGKN-GNSLKALEIYNSITD----ESDK-VNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 11 ~~~~ll~~~~~~-g~~~~a~~~~~~m~~----~~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
.+.-+-..|-+. |++++|.+.|++-.+ .+-+ --...+.-+...+.+.|++++|+++|++....-
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 333444444444 566666666665432 2211 124455667777899999999999999987653
No 200
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.13 E-value=0.81 Score=25.87 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=40.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
.-+....|.++..|++.+..++..++++... .+-...+++-|.+.|.++++.-++.++.
T Consensus 39 ~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 39 ENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGLYEEAVYLYSKLG 97 (143)
T ss_dssp C-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTSHHHHHHHHHCCT
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcchHHHHHHHHHHcc
Confidence 3467788899999999987788877776221 1334556666777777777777776653
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=81.03 E-value=12 Score=23.96 Aligned_cols=63 Identities=6% Similarity=0.015 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC-CC-CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDE-SD-KVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
.+-.+-..|...|++++|...|+.+.+. .- +.....+--+...+...|+.++|..+|++..+.
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456667788899999999999999743 11 111223333455677899999999999998775
No 202
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.36 E-value=26 Score=27.52 Aligned_cols=74 Identities=16% Similarity=0.102 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQSD 89 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 89 (94)
..|..+-.+--+.|...+|.+-|-+- -|...|.-.|+...+.|.+++-.+.+.-.+++..+|... +.||-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 45667777777777777777666332 367788888899999999998888887666666666544 3466665
Q ss_pred hc
Q 034447 90 HI 91 (94)
Q Consensus 90 ~~ 91 (94)
++
T Consensus 1177 Ak 1178 (1666)
T KOG0985|consen 1177 AK 1178 (1666)
T ss_pred HH
Confidence 54
No 203
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=80.21 E-value=13 Score=29.73 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDK 69 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 69 (94)
.|..|+.-|.+.+..++|-++++.|.+. +.-....|.-.+..+.+..+.++|..++++
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKR 1589 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3444455555555555555555555432 112334444444444444444444444433
No 204
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.17 E-value=3 Score=27.87 Aligned_cols=32 Identities=9% Similarity=0.024 Sum_probs=28.0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITD 37 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 37 (94)
=||..+++.+|+.+.+.++..+|..+.-.|..
T Consensus 132 F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 132 FPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 58999999999999999999999887766643
No 205
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=80.13 E-value=16 Score=29.32 Aligned_cols=62 Identities=8% Similarity=0.132 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
..|.++++.-...|.-+...++|++..+.. -....|..|..-|.+.+..++|.+++++|.++
T Consensus 1498 NiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK 1559 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK 1559 (1710)
T ss_pred HHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 345556665555565566666666655431 24567778888888888889999999998765
No 206
>PRK09857 putative transposase; Provisional
Probab=79.79 E-value=14 Score=24.04 Aligned_cols=67 Identities=10% Similarity=0.205 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDA 79 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 79 (94)
+..++....+.++.++..++++...+. ++......-++..-+-+.|.-+++..+..+|...|+.++.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 445666656667776677777666554 2233333445556666677777788888888888877653
No 207
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=79.77 E-value=17 Score=26.96 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=37.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 15 YIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 15 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+-..+...|...+|..+|+.. ..|.-.|.+|+..|+-.+|..+..+-.+ -+|+..-|..+-+
T Consensus 404 laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 334455566666666666655 3456666677777766666666666555 3356665655544
No 208
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=79.75 E-value=5.4 Score=20.14 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=28.8
Q ss_pred hcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCC
Q 034447 21 KNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGK 59 (94)
Q Consensus 21 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 59 (94)
-.|+.+.+.+++++..+.|+.|.......+..+..+-|+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 457778888888888877888887777777777766654
No 209
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.37 E-value=15 Score=26.17 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=53.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
++..|..+-.+..+.+.+++++..|++.+++ ++--...||-....+...++++.|.+.|+.-..
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 5667777777778889999999999999864 655777888888889999999999999988653
No 210
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.16 E-value=0.37 Score=27.25 Aligned_cols=54 Identities=15% Similarity=0.288 Sum_probs=43.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 034447 15 YIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFD 68 (94)
Q Consensus 15 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 68 (94)
++..+.+.+.++.....++.+...+-.-+...++.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 466677788888888889988876666788999999999999988888887766
No 211
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=78.96 E-value=9.4 Score=21.53 Aligned_cols=44 Identities=11% Similarity=0.193 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 034447 26 LKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDK 69 (94)
Q Consensus 26 ~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~ 69 (94)
+++.++|+.|...|+-- -..-|.....-+...|++++|..+|+.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 47777888887766643 455666777777777888888887764
No 212
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=78.88 E-value=8.2 Score=28.32 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLV 55 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 55 (94)
..|++|-+.|.+.|++++|.+++++-...- ..+.-|+.+.++|+
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHH
Confidence 345666666666666666666666544321 23444555555554
No 213
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=78.67 E-value=8.6 Score=20.92 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCH
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKF 60 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 60 (94)
.++..+.+.+..-.|.++++.+.+.+...+..|-=-.++.+.+.|-+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 45666666677778888888888777666666655556777666643
No 214
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=78.56 E-value=7.9 Score=21.30 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNSITD 37 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~m~~ 37 (94)
|..++..|-..|..++|.+++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55566666666666666666665554
No 215
>COG5210 GTPase-activating protein [General function prediction only]
Probab=78.32 E-value=20 Score=25.03 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 27 KALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 27 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
...++++.+++.|+.+...++..++..+.+.-..+.+.++++-+--.|.......+-+++..
T Consensus 360 ~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~ 421 (496)
T COG5210 360 LDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKL 421 (496)
T ss_pred HHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 34568888999999999999999999999999999999999999888877655555555443
No 216
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=78.13 E-value=13 Score=24.24 Aligned_cols=76 Identities=13% Similarity=0.249 Sum_probs=40.5
Q ss_pred ccHHHHHHHHHHHHhcCC----HHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCcc
Q 034447 7 TSISSYSSYIKFLGKNGN----SLKALEIYNSITDESDKV-NVFICNLILSCLVRNGK---FESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~----~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~ 78 (94)
++-..+.++|.. ...+ .+.++.+|+.+.+.|+.. |..-+-+-|-+++.... ...+.++++.+.+.|+++.
T Consensus 139 ~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik 216 (297)
T PF13170_consen 139 PEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIK 216 (297)
T ss_pred ccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccc
Confidence 344455555444 2222 355566677777767655 33333333333333322 3356677777777777766
Q ss_pred HHHHHH
Q 034447 79 AVTYNT 84 (94)
Q Consensus 79 ~~~~~~ 84 (94)
...|.+
T Consensus 217 ~~~yp~ 222 (297)
T PF13170_consen 217 YMHYPT 222 (297)
T ss_pred cccccH
Confidence 665543
No 217
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=77.91 E-value=0.79 Score=22.25 Aligned_cols=34 Identities=9% Similarity=0.127 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 034447 23 GNSLKALEIYNSITDESDKVNVFICNLILSCLVR 56 (94)
Q Consensus 23 g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 56 (94)
|--++..++|+.|.++...|....||-.+.-|..
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHHH
Confidence 4457788899999888888888888877776653
No 218
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=77.85 E-value=8.2 Score=27.93 Aligned_cols=58 Identities=10% Similarity=0.014 Sum_probs=38.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC------CC---------------------------CchHHHHHHHHHHHHhcCCHH
Q 034447 15 YIKFLGKNGNSLKALEIYNSITDE------SD---------------------------KVNVFICNLILSCLVRNGKFE 61 (94)
Q Consensus 15 ll~~~~~~g~~~~a~~~~~~m~~~------~~---------------------------~p~~~t~~~li~~~~~~g~~~ 61 (94)
+=.+|-..+++++|.++|+...+. |+ +-...+|.++=++|.-.++.+
T Consensus 359 ~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~ 438 (638)
T KOG1126|consen 359 LGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHD 438 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHH
Confidence 334556667777777777776541 00 124567888888888888888
Q ss_pred HHHHHHHHHHH
Q 034447 62 SSLKLFDKIKQ 72 (94)
Q Consensus 62 ~a~~~~~~m~~ 72 (94)
.|++.|++-.+
T Consensus 439 ~Aik~f~RAiQ 449 (638)
T KOG1126|consen 439 TAIKCFKRAIQ 449 (638)
T ss_pred HHHHHHHHhhc
Confidence 88888877654
No 219
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=77.70 E-value=7.6 Score=29.23 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLF 67 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~ 67 (94)
.++-.|..|.+.|.+++|.++-++... -+.....|-+-..-.-+.|++.+|.++|
T Consensus 793 ~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 793 LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 467789999999999999998876643 3346666766666667777777666543
No 220
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.61 E-value=4.1 Score=16.65 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 46 ICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 46 t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
+|..+-..|...|+.++|...|++-.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555556666677777776666644
No 221
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.49 E-value=3.3 Score=15.55 Aligned_cols=27 Identities=11% Similarity=0.320 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 46 ICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 46 t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+|..+-..+...+++++|...+++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455666677778888888888876654
No 222
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=76.76 E-value=12 Score=21.78 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGK--------------FESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~--------------~~~a~~~~~~m~~ 72 (94)
...+..+-..+.+.|++++|...+++.... .| +...+..+-..+...|+ +++|.+++++..+
T Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 357788888899999999999999988764 24 45566666667777665 4556666666554
No 223
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=76.72 E-value=8.5 Score=22.57 Aligned_cols=45 Identities=7% Similarity=0.132 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 43 NVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 43 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
=..|...++.+. ..|-..+...++++|.++|+..+...|+-+++-
T Consensus 109 V~GtlGvL~~ak-~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 109 VTGTLGVLALAK-SKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred eeehhHHHHHHH-HcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 345566655543 456677777888888888888777777776653
No 224
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=76.70 E-value=13 Score=22.07 Aligned_cols=45 Identities=18% Similarity=0.385 Sum_probs=28.0
Q ss_pred HHHHHHhh-CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 30 EIYNSITD-ESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 30 ~~~~~m~~-~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
++++.+.+ .|+.|....+.-++..+++.-..+.+.++++.+..+|
T Consensus 152 ~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG 197 (199)
T smart00164 152 DLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Confidence 34455553 5666666666666666666666666666666665554
No 225
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=75.95 E-value=14 Score=22.08 Aligned_cols=45 Identities=16% Similarity=0.041 Sum_probs=25.5
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCL 54 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 54 (94)
.|+...|..+++.+.+.|++.....+ ...++-+|.......+-.+
T Consensus 26 ~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~ 70 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSL 70 (167)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHh
Confidence 56666777777777777765544433 3344445555555444333
No 226
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=75.88 E-value=17 Score=23.19 Aligned_cols=64 Identities=17% Similarity=0.096 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+..+|.++-..|.+.|+.+.|.+-|+.-.+. .| +..+.|-.=-=+|..|.+++|.+.|++-...
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~ 132 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD 132 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC
Confidence 4456666666677777777777766655432 23 1122222111135666666666666665554
No 227
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=75.83 E-value=11 Score=20.72 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 45 FICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 45 ~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.-|..++.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4689999999999999999999999877
No 228
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.63 E-value=21 Score=28.03 Aligned_cols=58 Identities=7% Similarity=0.099 Sum_probs=46.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKL 66 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 66 (94)
-|...|.-+++...+.|.+++..+.+..-++..-+|.+. +.||-+|++-++..+.+.+
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence 366789999999999999999999887776665556554 5788899988887776654
No 229
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.58 E-value=21 Score=23.79 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ-----SGLTPDAVTY 82 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~ 82 (94)
+++..-..|..+|.+.+|.++.+...... +.+...|-.+++.+...|+--.+.+-++++.+ -|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 45556678889999999999988877542 34889999999999999998888888877754 2665554443
No 230
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.40 E-value=7.7 Score=27.49 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=36.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCch-HHHHHHHHHHHHhcCCHHHHHH
Q 034447 18 FLGKNGNSLKALEIYNSITDESDKVN-VFICNLILSCLVRNGKFESSLK 65 (94)
Q Consensus 18 ~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~ 65 (94)
-|-+.|.+++|.+.+..-.+. .|| ..-|.-...+|...|+|+++.+
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vie 170 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIE 170 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHH
Confidence 455678899999998877754 477 7788888888888888888775
No 231
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=75.04 E-value=10 Score=20.84 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC
Q 034447 13 SSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNG 58 (94)
Q Consensus 13 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 58 (94)
.+++....+.+..-.|.++++.+...+...+..|.=--|+.+.+.|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3566666666667777888888877766665554333355555554
No 232
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=73.67 E-value=14 Score=20.74 Aligned_cols=55 Identities=9% Similarity=0.088 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFD 68 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 68 (94)
-..++..+.+.+.+......++.+...+ ..+...+|.++..|++.. .++....++
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 4567888888899999999999998776 378889999999999874 344445554
No 233
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=73.53 E-value=14 Score=20.72 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=42.7
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.+...+|.++..|++.. .++..+.++. ..+.+...-+++-|.+.+.++++.-++.++..
T Consensus 39 ~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~ 97 (140)
T smart00299 39 ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN 97 (140)
T ss_pred cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC
Confidence 46678899999999764 3444444442 13445556688999999999999999988853
No 234
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=73.48 E-value=16 Score=21.35 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCchHHHHHHHHHHHHh
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDES-DKVNVFICNLILSCLVR 56 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~t~~~li~~~~~ 56 (94)
....--.++.+|.+.+++++|...++...+.. -.|+ .-|.-.+.|++.
T Consensus 46 a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 46 AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 33455678899999999999999999887643 2232 445555555443
No 235
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=73.48 E-value=25 Score=26.22 Aligned_cols=60 Identities=15% Similarity=0.157 Sum_probs=40.7
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHH--HHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEI--YNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDK 69 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~--~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 69 (94)
.++..++..=++|.+.++..-...+ +++|+++|-.|+..-. ...|+-.|.+.+|.++|.+
T Consensus 596 LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 596 LEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH
Confidence 3566788888999998886655444 5688889988887643 3345555666666665544
No 236
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=73.26 E-value=21 Score=22.80 Aligned_cols=63 Identities=6% Similarity=-0.057 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
.+...|--.|.+.|++..|..-+++-.+.. +-+..+|.++...|-+.|..+.|.+-|++-.+.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl 98 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL 98 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc
Confidence 455667778999999999999999887642 237889999999999999999999999997653
No 237
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=72.54 E-value=19 Score=25.66 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=37.0
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 034447 19 LGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKL 66 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 66 (94)
+-+.|++..|+.-+.++..+. +-|...|+-..-+|.+.|.+..|++=
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~D 414 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKD 414 (539)
T ss_pred HHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHH
Confidence 345688888888888887765 44888888888888888888887763
No 238
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=72.51 E-value=21 Score=22.33 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCC--------------chHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 034447 13 SSYIKFLGKNGNSLKALEIYNSITDESDK--------------VNVFICNLILSCLVRNGKFESSLKLFDK 69 (94)
Q Consensus 13 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--------------p~~~t~~~li~~~~~~g~~~~a~~~~~~ 69 (94)
-+++-.|-+.-++.+...+++.|.+..+. +--..-|+...-|.++|..+.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 36778888889999999999999764332 4445667778889999999999999873
No 239
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=72.37 E-value=18 Score=22.32 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCC
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGK 59 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 59 (94)
..+..|.+.|.+++|.++++...+. |+....-.-+....+..+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 4566788888888888888877653 455554444444444443
No 240
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=72.25 E-value=32 Score=24.43 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=50.8
Q ss_pred CccHHHH--HHHHHHHHhcCCHHHHHHHHHHHhhCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 6 KTSISSY--SSYIKFLGKNGNSLKALEIYNSITDESDKVN-VFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 6 ~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
.|+...| .-+-..|-..|++++|...+++-.+. +|+ +--|.+-.+-+-+.|++++|.+.++.-++-+
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD 258 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD 258 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 3555444 44566777899999999999987764 353 5677777788899999999999888877644
No 241
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=71.93 E-value=10 Score=18.65 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=33.8
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHH-----HhcCCHHHHHHHH
Q 034447 19 LGKNGNSLKALEIYNSITDESDKVNVFICNLILSCL-----VRNGKFESSLKLF 67 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~-----~~~g~~~~a~~~~ 67 (94)
+-..|++-+|.+++++.=...-.+....+..+|... .+.|+.+.|.+++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 345789999999999885433334677777777764 4678888887764
No 242
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=71.90 E-value=15 Score=21.94 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 034447 44 VFICNLILSCLVRNGKFESSLKLFDKIKQSGLTP 77 (94)
Q Consensus 44 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 77 (94)
...+..+.+-|++.|+.++|++.|.++.+....|
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~ 69 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSP 69 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH
Confidence 4568888999999999999999999998875544
No 243
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.88 E-value=22 Score=22.04 Aligned_cols=71 Identities=8% Similarity=0.074 Sum_probs=44.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCccHHHHHHHHHHhh
Q 034447 18 FLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ---SGLTPDAVTYNTVYQSDH 90 (94)
Q Consensus 18 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~ 90 (94)
.+++.|+ ++|.+.|-.+...+.--+...--+ +..|-...+.+++++++-+..+ .+-.+|+..+.+|.+.+.
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~ 189 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQ 189 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 4556665 556777777776655444444444 4555557788888888776543 333677777888877743
No 244
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=70.86 E-value=23 Score=22.17 Aligned_cols=68 Identities=7% Similarity=0.055 Sum_probs=51.6
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
.|++..--.|-.+..+.|+..+|...|++-...-+.-|.-..-.+.++...-+++..|...++++.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~ 153 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY 153 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Confidence 35555555677778888888888888888877666667777777778888888888888888887653
No 245
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.33 E-value=20 Score=21.34 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=35.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 034447 19 LGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVT 81 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 81 (94)
+.+.|++.+|..+|++..... |......+|+..|-....-..=...-++....+-.|+...
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr~~A~evle~~~d~~a~~ 114 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWRRYADEVLESGADPDARA 114 (160)
T ss_pred HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHHHHHHHHHhcCCChHHHH
Confidence 568899999999999987653 4444445555554433322222223344555554454443
No 246
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.92 E-value=43 Score=24.94 Aligned_cols=29 Identities=7% Similarity=0.100 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 44 VFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 44 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
...++.|-..|-.+|++.+|++-|++-.+
T Consensus 456 AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 456 AEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 34555566666666666666666666544
No 247
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=69.74 E-value=13 Score=22.17 Aligned_cols=46 Identities=22% Similarity=0.418 Sum_probs=36.1
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 034447 29 LEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 29 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 75 (94)
.++++.+.+.|+.+....+..++..+++.=..+.+.++++ ..-.|.
T Consensus 149 P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~ 194 (214)
T PF00566_consen 149 PELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGY 194 (214)
T ss_dssp HHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCT
T ss_pred hhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCC
Confidence 4456667778999999999999999998889999999999 444554
No 248
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.64 E-value=29 Score=22.78 Aligned_cols=68 Identities=12% Similarity=0.024 Sum_probs=48.4
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNG-KFESSLKLFDKIKQSG 74 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g 74 (94)
.|+..+.|=...++...|++++|..++++.....-. +..|..-+|-+--..| +.+...+.+.++....
T Consensus 204 ~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 204 PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 688889999999999999999999999998865432 3344444444444444 5555667777776543
No 249
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=68.68 E-value=19 Score=21.14 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=30.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 034447 16 IKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILS 52 (94)
Q Consensus 16 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 52 (94)
|..+-+.|...+...++++|.+.|+..+...|+-+++
T Consensus 116 L~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 116 LALAKSKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 3444556888889999999999999999998887765
No 250
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=68.53 E-value=48 Score=24.90 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=52.8
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.|++..|-++- |+..++++.|.+...+..+.+-.-+...|--+.-.+...+++.+|+++.+.-..
T Consensus 477 dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 477 DPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred CchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 67777776654 556788999999999888776667889999999999999999999999877543
No 251
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=68.52 E-value=37 Score=23.69 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=46.3
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHhh------CCC--------------------------Cc-hHHHHHHHHHHHH
Q 034447 11 SYSSYIKFLG--KNGNSLKALEIYNSITD------ESD--------------------------KV-NVFICNLILSCLV 55 (94)
Q Consensus 11 ~~~~ll~~~~--~~g~~~~a~~~~~~m~~------~~~--------------------------~p-~~~t~~~li~~~~ 55 (94)
-...+|.+-. -.|+.++|.+-|+.|.. .|+ .| =...+.+.+...|
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~ 199 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARC 199 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 3334444433 24888888888888853 111 12 3467788999999
Q ss_pred hcCCHHHHHHHHHHHHHc-CCCccH
Q 034447 56 RNGKFESSLKLFDKIKQS-GLTPDA 79 (94)
Q Consensus 56 ~~g~~~~a~~~~~~m~~~-g~~p~~ 79 (94)
..|+|+.|+++++.-... -+.++.
T Consensus 200 ~~gdWd~AlkLvd~~~~~~vie~~~ 224 (531)
T COG3898 200 AAGDWDGALKLVDAQRAAKVIEKDV 224 (531)
T ss_pred hcCChHHHHHHHHHHHHHHhhchhh
Confidence 999999999999886553 334443
No 252
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=68.48 E-value=11 Score=21.28 Aligned_cols=25 Identities=16% Similarity=0.554 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHH
Q 034447 58 GKFESSLKLFDKIKQSGLTPDAVTY 82 (94)
Q Consensus 58 g~~~~a~~~~~~m~~~g~~p~~~~~ 82 (94)
|+...|.++++.+..+|++|-.+.|
T Consensus 11 G~~~ra~riL~~L~~Eg~ep~~lLw 35 (125)
T PF14840_consen 11 GDAKRALRILQGLQAEGVEPPILLW 35 (125)
T ss_dssp T-HHHHHHHHHHHHHTT--HHHHHH
T ss_pred CCHHHHHHHHHHHHHCCccHHHHHH
Confidence 4445555555555555555544444
No 253
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=68.35 E-value=44 Score=24.46 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
....+-..+-+.|+.++|.+++++-....-+-...-|. ....+...++.++|++.++++++
T Consensus 525 i~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~-~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 525 ILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH-RASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH-HHHHHHhhcchHHHHHHHHHHHH
Confidence 33333444445556666666665554332222222222 23444555666666666666644
No 254
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=67.94 E-value=31 Score=22.60 Aligned_cols=61 Identities=10% Similarity=0.128 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 25 SLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 25 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
-.++..+|++..... +-|+.+-.-|-..+...|++.+|...|+.|.+.. |....+-.+|+.
T Consensus 209 ta~a~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 209 TAKARALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred cHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 455566666665432 2367777777778888889999998888887764 333445555543
No 255
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=67.65 E-value=30 Score=22.27 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=52.4
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHH
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDES-DKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQS-GLTPDAVTYN 83 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~ 83 (94)
|=..-|+--+.. .+.|++++|..-|+.+..+. ..| ...+--.++-++-+.++.+.|+..+++..+. +-.||. -|.
T Consensus 33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~ 110 (254)
T COG4105 33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYA 110 (254)
T ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHH
Confidence 333445544443 46799999999999998642 222 3445555667788999999999999997664 444543 244
Q ss_pred HHHHH
Q 034447 84 TVYQS 88 (94)
Q Consensus 84 ~ll~~ 88 (94)
.-|.+
T Consensus 111 ~Ylkg 115 (254)
T COG4105 111 YYLKG 115 (254)
T ss_pred HHHHH
Confidence 44444
No 256
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=67.23 E-value=20 Score=20.09 Aligned_cols=74 Identities=12% Similarity=0.076 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDES----DKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVY 86 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 86 (94)
.+-.+-..+-..|++++|..++++....- ......+| +.-++...|+.++|.+.+-.... ++..-|.--|
T Consensus 40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f--~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~ 113 (120)
T PF12688_consen 40 ALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF--LALALYNLGRPKEALEWLLEALA----ETLPRYRRAI 113 (120)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH--HHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 44456667778899999999999887531 11223333 23366888999999998766544 2333676666
Q ss_pred HHhh
Q 034447 87 QSDH 90 (94)
Q Consensus 87 ~~~~ 90 (94)
..|+
T Consensus 114 ~~ya 117 (120)
T PF12688_consen 114 RFYA 117 (120)
T ss_pred HHHH
Confidence 6654
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=66.82 E-value=24 Score=20.79 Aligned_cols=54 Identities=20% Similarity=0.133 Sum_probs=43.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 18 FLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 18 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+.+..|+++.|.+.|.+-... .+-+...||.-..++--.|+.++|++=+++-.+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 466789999999999876642 123788999999999999999999988877654
No 258
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.19 E-value=29 Score=21.46 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhCCCCc--hH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 25 SLKALEIYNSITDESDKV--NV-----FICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 25 ~~~a~~~~~~m~~~~~~p--~~-----~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
++.|..+|+...+..-.| -. ..=-..+-.|.+.|.+++|.+++++...+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 578888888887543222 11 11223345688999999999999998764
No 259
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.11 E-value=38 Score=22.85 Aligned_cols=62 Identities=15% Similarity=0.212 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.--|++.+..+.+-.+++++.+++..-.++. | +....+.+-.+|-...++..|-..++++..
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q 72 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ 72 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3346666666777777788887777665542 4 555666666666777777777777776643
No 260
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.96 E-value=34 Score=22.30 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCL-VRNGKFESSLKLFDKIKQSGLTPDAVTYN 83 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 83 (94)
.|..+.-+...+|+.+.|..+++.+..+ + |...--..|=... -..|++++|+++++...+++ +.|.++|.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~K 124 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRK 124 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHH
Confidence 3455666667788999999999998764 2 4433333333332 34589999999999998877 44666664
No 261
>PF11126 Phage_DsbA: Transcriptional regulator DsbA; InterPro: IPR020313 DsbA is a double stranded binding protein found in bacteriophage T4 which is involved in transcriptional regulation. DsbA, along with other viral proteins, interacts with the host RNA polymerase core enzyme enabling initiation of transcription. DsbA acts as an enhancer protein of late genes in vitro. The protein consists of mainly alpha helices [].
Probab=65.91 E-value=16 Score=18.54 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=11.5
Q ss_pred ccHHHHHHHHHHhhcc
Q 034447 77 PDAVTYNTVYQSDHIT 92 (94)
Q Consensus 77 p~~~~~~~ll~~~~~~ 92 (94)
-+...||.+++.||++
T Consensus 32 v~gk~Fnkl~~lyHk~ 47 (69)
T PF11126_consen 32 VDGKMFNKLLKLYHKQ 47 (69)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 4567788888887764
No 262
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=65.77 E-value=15 Score=18.21 Aligned_cols=21 Identities=38% Similarity=0.638 Sum_probs=17.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCc
Q 034447 57 NGKFESSLKLFDKIKQSGLTP 77 (94)
Q Consensus 57 ~g~~~~a~~~~~~m~~~g~~p 77 (94)
.-+++.|...|.++...|-.|
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP 58 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIP 58 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCC
Confidence 449999999999999876554
No 263
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.16 E-value=37 Score=22.42 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=32.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh-----cCCHHHHHHHH
Q 034447 15 YIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVR-----NGKFESSLKLF 67 (94)
Q Consensus 15 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~-----~g~~~~a~~~~ 67 (94)
-|..|+|.+++..+.++-.......-.-+...|.+++.-|.. .|.+++|+++.
T Consensus 124 CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 124 CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 345577777777777776666543222344446666666543 47777777654
No 264
>PF02840 Prp18: Prp18 domain; InterPro: IPR004098 The splicing factor Prp18 is required for the second step of pre-mRNA splicing. PRP18 appears to be primarily associated with the U5 snRNP. The structure of a large fragment of the Saccharomyces cerevisiae Prp18 is known []. This fragment is fully active in yeast splicing in vitro and includes the sequences of Prp18 that have been evolutionarily conserved. The core structure consists of five alpha-helices that adopt a novel fold. The most highly conserved region of Prp18, a nearly invariant stretch of 19 aa, forms part of a loop between two alpha-helices and may interact with the U5 small nuclear ribonucleoprotein particles [].; GO: 0008380 RNA splicing, 0005681 spliceosomal complex; PDB: 1DVK_A.
Probab=65.13 E-value=26 Score=20.55 Aligned_cols=45 Identities=2% Similarity=0.091 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 27 KALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 27 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
....+|..++...+++|...--.-|--+++.+++.+|.+.|=+|.
T Consensus 42 ~l~PL~~~Lk~~~l~~dil~~L~~Iv~~~q~r~y~~And~Yl~Ls 86 (144)
T PF02840_consen 42 YLKPLFKKLKKRTLPEDILDSLATIVYHLQQREYVKANDAYLKLS 86 (144)
T ss_dssp HHHHHHHHHHCT-S-HHHHHHHHHHHHHHCCCGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 446689999999999999988888888899999999999998884
No 265
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=65.01 E-value=19 Score=21.36 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 034447 58 GKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 58 g~~~~a~~~~~~m~~~g~ 75 (94)
...-.|.++++++.+.+.
T Consensus 39 ~~hlSa~eI~~~L~~~~~ 56 (169)
T PRK11639 39 PGAISAYDLLDLLREAEP 56 (169)
T ss_pred CCCCCHHHHHHHHHhhCC
Confidence 333455555555555543
No 266
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.90 E-value=22 Score=19.76 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 25 SLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 25 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
.++|.-+-+-+...+-. ...+--+-+.+..+.|++++|.++.+.+ ..||...|-.|-.
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce 78 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE 78 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH
Confidence 56666666666554321 2233333344567889999999988777 4799998876644
No 267
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=64.79 E-value=30 Score=21.91 Aligned_cols=64 Identities=19% Similarity=0.180 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHhcC---------CHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNG---------NSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g---------~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
...-|-++-.+|++.| +++.-.++++...+.|++- -...|+.+|+--.-.-+++++.+++..++
T Consensus 162 ~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 162 HLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 3455677777888776 4566677777777777753 55677888876555667888888877664
No 268
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=64.24 E-value=24 Score=19.82 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYN 83 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 83 (94)
+-+..+.+.|++++| +.. ....-.||...|-+|-. .+.|..+++...+.++..+|- |....|.
T Consensus 45 Ir~~sLmNrG~Yq~A--Ll~--~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g~-~~~q~Fa 107 (116)
T PF09477_consen 45 IRLSSLMNRGDYQEA--LLL--PQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSGS-PELQAFA 107 (116)
T ss_dssp HHHHHHHHTT-HHHH--HHH--HTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-SS-HHHHHHH
T ss_pred HHHHHHHhhHHHHHH--HHh--cccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCCC-HHHHHHH
Confidence 445566677888877 221 12233588888888765 688888888888888876663 4444443
No 269
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=64.23 E-value=27 Score=20.59 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=28.6
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 034447 5 GKTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDK 41 (94)
Q Consensus 5 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 41 (94)
.+++....--+-.+|.+.|+..++.+++.+--+.|++
T Consensus 116 ~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 116 EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3677888888899999999999999999998888874
No 270
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=63.40 E-value=26 Score=19.95 Aligned_cols=40 Identities=8% Similarity=0.178 Sum_probs=16.0
Q ss_pred HHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHH
Q 034447 28 ALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLF 67 (94)
Q Consensus 28 a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~ 67 (94)
..++|..|...|+-- -..-|.....-+-..|++.+|.++|
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344444444443322 1222333333334444444444444
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=63.09 E-value=46 Score=23.78 Aligned_cols=43 Identities=9% Similarity=0.200 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHHHHHHH
Q 034447 46 ICNLILSCLVRNGKFESSLKLFDKIKQSG-LTPDAVTYNTVYQS 88 (94)
Q Consensus 46 t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~ 88 (94)
+--.+..+.-+.|+.++|++.+++|.+.. ..-+.-....||++
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~ 304 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEA 304 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHH
Confidence 33345555567799999999999998653 22233355556665
No 272
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=62.89 E-value=17 Score=25.84 Aligned_cols=60 Identities=15% Similarity=0.065 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVN-VFICNLILSCLVRNGKFESSLKLFDK 69 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~ 69 (94)
|-+.|..-..+|++.|++++|..=-.+.. .+.|+ ..-|+-.=.+..-.|++++|+.-|.+
T Consensus 35 nhvlySnrsaa~a~~~~~~~al~da~k~~--~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 35 NHVLYSNRSAAYASLGSYEKALKDATKTR--RLNPDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred ccchhcchHHHHHHHhhHHHHHHHHHHHH--hcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 34444444444444444444433222221 22232 22333333334444455555555444
No 273
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.40 E-value=53 Score=23.26 Aligned_cols=61 Identities=11% Similarity=0.153 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHHHhhC---CCC----------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 034447 22 NGNSLKALEIYNSITDE---SDK----------VNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTY 82 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~~---~~~----------p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 82 (94)
.|++.+|..+++..... .+. .+...+..++++....+....++..+++|.+.|..|.....
T Consensus 213 ~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~ 286 (484)
T PRK14956 213 DGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLW 286 (484)
T ss_pred CChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHH
Confidence 47788888888765321 122 34445566666666666678999999999999988865543
No 274
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=62.14 E-value=54 Score=23.30 Aligned_cols=67 Identities=15% Similarity=0.268 Sum_probs=46.2
Q ss_pred hcCCHHHHHHHHHHHhhC--CCC------------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCccHHHH
Q 034447 21 KNGNSLKALEIYNSITDE--SDK------------VNVFICNLILSCLVRNGKFESSLKLFDKIKQSG----LTPDAVTY 82 (94)
Q Consensus 21 ~~g~~~~a~~~~~~m~~~--~~~------------p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~ 82 (94)
+.+.+++|.+.+...... +.. +|.+-=+..+.+....|.+.++..++++|...= ..=+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 567788887777666543 222 455555777888889999999999988886542 33567777
Q ss_pred HHHHH
Q 034447 83 NTVYQ 87 (94)
Q Consensus 83 ~~ll~ 87 (94)
+-++-
T Consensus 171 d~~vl 175 (549)
T PF07079_consen 171 DRAVL 175 (549)
T ss_pred HHHHH
Confidence 76443
No 275
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=59.81 E-value=18 Score=19.07 Aligned_cols=31 Identities=10% Similarity=0.052 Sum_probs=21.1
Q ss_pred CCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 40 DKVNVFICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 40 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
+.|+...||-+++.....+.+.-|..++.+.
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~ 42 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYLMRI 42 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 4577777777777777777776666655444
No 276
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=59.77 E-value=20 Score=23.83 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCHH---HHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 034447 14 SYIKFLGKNGNSL---KALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNT 84 (94)
Q Consensus 14 ~ll~~~~~~g~~~---~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 84 (94)
++++.+.+.++.. +|..+++..... -+.|...=-.+++-|...|-.+.|...|+.+.-+.++-|...|..
T Consensus 185 ~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~-s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~ 257 (365)
T PF09797_consen 185 SLLDLYSKTKDSEYLLQAIALLEHALKK-SPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLI 257 (365)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHH
Confidence 4555554544433 333344433322 123444444556666666666666666666655555555555543
No 277
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=59.16 E-value=31 Score=24.45 Aligned_cols=48 Identities=17% Similarity=0.032 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCchHHHHHHHHHHHHhc
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDE----SDKVNVFICNLILSCLVRN 57 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~t~~~li~~~~~~ 57 (94)
.-=+...+.+.+.|.+.+++.+++.+..+ ...-|..+||.++-.++++
T Consensus 129 ~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 129 FLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 33456778888999999999999888754 3346888888866666544
No 278
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=58.46 E-value=26 Score=24.91 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVY 86 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 86 (94)
+...-.-++..|.+.|..+.+..+.+.+-.+-+ ...-|..-+.-+.++|+...+..+.+.+.++....+......+|
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll 480 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLL 480 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------------------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHH
Confidence 344456678888899999999998887765432 45678888888999999988888877776554444433344343
No 279
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=58.08 E-value=58 Score=22.27 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=35.7
Q ss_pred HHHh---cCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhc---------CCHHHHHHHHHHH
Q 034447 18 FLGK---NGNSLKALEIYNSITDESDKVNVFICNLILSCLVRN---------GKFESSLKLFDKI 70 (94)
Q Consensus 18 ~~~~---~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~---------g~~~~a~~~~~~m 70 (94)
++.+ .|+.++|.+++.......-.++.-||..+-+.|-.. ...+.|+..|.+-
T Consensus 188 ALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg 252 (374)
T PF13281_consen 188 ALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKG 252 (374)
T ss_pred HHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 4445 799999999999966656667777888776665321 2345566666543
No 280
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=57.99 E-value=27 Score=24.60 Aligned_cols=46 Identities=7% Similarity=0.283 Sum_probs=38.0
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 29 LEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 29 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
-++|..+.+..+.||.+.+--+...|.++-..+-|-++++-...+|
T Consensus 459 p~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdg 504 (586)
T KOG2223|consen 459 PKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDG 504 (586)
T ss_pred HHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecc
Confidence 4567777788899999999999999999988888888887766655
No 281
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=57.71 E-value=23 Score=17.65 Aligned_cols=50 Identities=4% Similarity=0.016 Sum_probs=30.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVR 56 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 56 (94)
.|....++.++..+++-...+++...+.+....|. .+.-+|---++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 45556667777777777777777777777766654 344555554554444
No 282
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=57.58 E-value=16 Score=15.65 Aligned_cols=23 Identities=9% Similarity=0.434 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHH
Q 034447 59 KFESSLKLFDKIKQSGLTPDAVTYN 83 (94)
Q Consensus 59 ~~~~a~~~~~~m~~~g~~p~~~~~~ 83 (94)
.++.|..+|++.... .|+..+|-
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHH
Confidence 467788888887764 47666663
No 283
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.81 E-value=29 Score=18.54 Aligned_cols=58 Identities=10% Similarity=0.074 Sum_probs=39.1
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhc
Q 034447 28 ALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQSDHI 91 (94)
Q Consensus 28 a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 91 (94)
+.++++.+.+.|+ .+.....-+..+-...|+.+.|.++++++. .| |+ .|..+++++..
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLre 78 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRE 78 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHH
Confidence 4567888888775 444445554444446789999999999998 54 43 36667776543
No 284
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.73 E-value=45 Score=20.64 Aligned_cols=58 Identities=12% Similarity=0.181 Sum_probs=34.4
Q ss_pred hcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 21 KNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 21 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
..|-+++...-.+-+...+-+.-...-.+|=-+--+.|++.+|.+.|+++..+...|-
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 3444444444444443333333333444555555688999999999999887655553
No 285
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=56.44 E-value=58 Score=25.23 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=45.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 21 KNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 21 ~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
....+.++.++|+.|...|+-. -...|-..-..+.+.+.+++|..+|+.=.+....|.
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~ 148 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPL 148 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 4456899999999999888876 455666666777888889999999988776666663
No 286
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=55.16 E-value=77 Score=24.93 Aligned_cols=61 Identities=13% Similarity=0.129 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHH--HHhcCCHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSC--LVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~--~~~~g~~~~a~~~~~~m~ 71 (94)
|...|..+..+|.++|....|.++|++-... +|+ .+|...-.+ -+..|.+.++.+.+....
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6677778888888888888888888765532 242 233322222 256677777777766654
No 287
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=54.87 E-value=14 Score=14.36 Aligned_cols=16 Identities=19% Similarity=0.538 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHHHc
Q 034447 58 GKFESSLKLFDKIKQS 73 (94)
Q Consensus 58 g~~~~a~~~~~~m~~~ 73 (94)
|+.+.+..+|+++.+.
T Consensus 1 ~~~~~~r~i~e~~l~~ 16 (33)
T smart00386 1 GDIERARKIYERALEK 16 (33)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 3456666666666543
No 288
>PRK04841 transcriptional regulator MalT; Provisional
Probab=53.93 E-value=91 Score=23.28 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDE----SD-KVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..+.+-..+...|++++|...+++.... |- .+-..++..+-..+...|++++|...+++...
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 559 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ 559 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455555667789999999998877532 11 12234555666678889999999998877543
No 289
>PF09119 SicP-binding: SicP binding; InterPro: IPR015203 Members of this family bind the chaperone SicP, which is required both to maintain the stability of SptP, as well as to ensure the eventual secretion of the protein. The domain is found in the Salmonella effector protein SptP, which interacts with SicP chaperone dimers mainly through four regions of its chaperone-binding domain. The structure of the SptP-SicP complex contains four molecules of SicP, aligned in a linear fashion and arranged in two sets of tightly bound homodimers that bind two SptP molecules. The SicP homodimers do not interact with each other, but are held together by a molecular interface formed between two SptP molecules. Each SptP molecule is wrapped around by three SicP chaperones (two chaperones from one homodimer and a third one from the opposite homodimer pair) []. ; GO: 0005615 extracellular space; PDB: 1JYO_F.
Probab=53.48 E-value=33 Score=18.06 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 034447 42 VNVFICNLILSCLVRNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 42 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 75 (94)
-|..+..+.+.++.+.=..+.+.+++..+.-+|-
T Consensus 35 ~nqktL~vFl~ALa~~YGe~~a~~~~~~~~ls~~ 68 (81)
T PF09119_consen 35 ENQKTLQVFLEALAERYGEETANKVLDKMDLSGG 68 (81)
T ss_dssp S-HHHHHHHHHHHHHTTSCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCC
Confidence 3666666666666666666666666666554433
No 290
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=53.33 E-value=97 Score=23.43 Aligned_cols=66 Identities=9% Similarity=-0.019 Sum_probs=52.6
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+-|...|..+--+....|+++.+.+.|++-...-+ -....|..+-.+|...|.-..|..+++.-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 34778889999999999999999999998764322 3556788888889999998889988877544
No 291
>PF14044 NETI: NETI protein
Probab=52.78 E-value=14 Score=18.04 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHcCCCc
Q 034447 62 SSLKLFDKIKQSGLTP 77 (94)
Q Consensus 62 ~a~~~~~~m~~~g~~p 77 (94)
...+.+++|.+.|+.|
T Consensus 9 TI~~CL~RM~~eGY~P 24 (57)
T PF14044_consen 9 TISDCLARMKKEGYMP 24 (57)
T ss_pred cHHHHHHHHHHcCCCc
Confidence 3456788888888877
No 292
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=52.71 E-value=14 Score=20.75 Aligned_cols=19 Identities=11% Similarity=0.073 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhCCCCchHH
Q 034447 27 KALEIYNSITDESDKVNVF 45 (94)
Q Consensus 27 ~a~~~~~~m~~~~~~p~~~ 45 (94)
--..+.++|..+|.+||..
T Consensus 53 yH~lv~~EM~~RGY~~~~~ 71 (120)
T TIGR02328 53 YHLLVMEEMATRGYHVSKQ 71 (120)
T ss_pred HHHHHHHHHHHcCCCCChh
Confidence 3456889999999999884
No 293
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=52.51 E-value=72 Score=21.73 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC---CCCchHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccHHH
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDE---SDKVNVFICN--LILSCLVRNGKFESSLKLFDKIKQ-----SGLTPDAVT 81 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~t~~--~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 81 (94)
.++...-+.++.++|.+.++++.+. -=.|+.+.|. .+.+.+-..|+..++.+.+++..+ .++.|+.++
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 3444444567899999999888642 2235666554 455667788999999999998877 677775543
No 294
>TIGR03236 dnd_assoc_1 dnd system-associated protein 1. A DNA sulfur modification system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. Members of this protein family are strictly limited to species with the dnd operon, and are found close to the dnd operon on the chromosomes of Bacillus cereus E33L, Hahella chejuensis KCTC 2396, and Pseudoalteromonas haloplanktis TAC12.
Probab=51.88 E-value=67 Score=21.89 Aligned_cols=41 Identities=10% Similarity=0.182 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 034447 21 KNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFE 61 (94)
Q Consensus 21 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 61 (94)
...+-=.-.++|++..++|+-.|-.+=..+|.-|-+.|.+|
T Consensus 308 g~~~Kl~l~~L~~eFekRGvffD~~SkqeiI~fyEkin~lE 348 (363)
T TIGR03236 308 GEREKLPLNRLIEEFSKRGVAFDRQSQQMLIEFYERHGNLE 348 (363)
T ss_pred CCcccchHHHHHHHHHhcCceeCchhHHHHHHHHHHhCccc
Confidence 33344456789999999999999999999999888887654
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=51.62 E-value=50 Score=19.61 Aligned_cols=35 Identities=20% Similarity=0.088 Sum_probs=24.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 034447 19 LGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVR 56 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 56 (94)
+.+.|++.+|.++|++..+.+.. ..|..-+.++|-
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~~~~---~p~~kAL~A~CL 88 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSSAGA---PPYGKALLALCL 88 (153)
T ss_pred HHHcCCHHHHHHHHHhhhccCCC---chHHHHHHHHHH
Confidence 56889999999999999976422 234444444443
No 296
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.30 E-value=48 Score=19.31 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=34.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILS 52 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 52 (94)
.|+...-.+-|++|-+.+++..|.++|+..+.. +.+-...|-.++.
T Consensus 81 VP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 81 VPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred CCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 577888889999999999999999999998843 2233334555544
No 297
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.23 E-value=83 Score=22.04 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=41.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCL----VRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~----~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
.+..|++.+|..+...+-.+.+.++|+.+.-.|.+....+--+++... .+.....+..+++....+.-+.++
T Consensus 315 ~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~~~~~~~~ 390 (436)
T KOG2058|consen 315 ASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKVLFRVALAILKKHEEEILKEDSSKEILRVLPDLTKRSIDPD 390 (436)
T ss_pred eeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHhhhhh
Confidence 355677777777777777788888887777666544333333333322 233455555555555444433333
No 298
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=51.20 E-value=69 Score=21.14 Aligned_cols=85 Identities=9% Similarity=0.047 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHHHh-cC-CHHHHHHHHHHHh-hCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHH
Q 034447 8 SISSYSSYIKFLGK-NG-NSLKALEIYNSIT-DESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS-GLTPDAVTYN 83 (94)
Q Consensus 8 ~~~~~~~ll~~~~~-~g-~~~~a~~~~~~m~-~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~ 83 (94)
|...-..+|+.... .+ .+..--++.+-+. +.|-.++..+-..+|..+++.+++...+++++.-... +..-|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Confidence 44455555655554 22 3444445555554 3356688889999999999999999999999987655 5566888899
Q ss_pred HHHHH-hhcc
Q 034447 84 TVYQS-DHIT 92 (94)
Q Consensus 84 ~ll~~-~~~~ 92 (94)
.+|+. -..|
T Consensus 243 ~FI~li~~sg 252 (292)
T PF13929_consen 243 EFIKLIVESG 252 (292)
T ss_pred HHHHHHHHcC
Confidence 88887 4444
No 299
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.94 E-value=66 Score=20.85 Aligned_cols=62 Identities=15% Similarity=0.360 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDE----SDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
..-|+.-++++ +.|++.+|..-|....+. -..||..- .|-.++...|++++|..+|..+.+.
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~y--WLGe~~y~qg~y~~Aa~~f~~~~k~ 207 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYY--WLGESLYAQGDYEDAAYIFARVVKD 207 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHH--HHHHHHHhcccchHHHHHHHHHHHh
Confidence 34688888766 567799999999988753 23344443 4678899999999999999988764
No 300
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.91 E-value=76 Score=21.53 Aligned_cols=54 Identities=9% Similarity=-0.062 Sum_probs=40.0
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCchHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 034447 19 LGKNGNSLKALEIYNSITDESDKVNVF--ICNLILSCLV--RNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~~~~~~p~~~--t~~~li~~~~--~~g~~~~a~~~~~~m~~~ 73 (94)
+-+.+++..|.++|+++..+ ++++.. .+..+..+|. ..-+.++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33789999999999999987 666554 5566666664 345788888888876654
No 301
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=50.71 E-value=73 Score=21.24 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHH-HHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSL-KLFDK 69 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~-~~~~~ 69 (94)
|-..=-.++..|...|..+.|...|+.+.-..+..|...|..+=+ +...|....+. +.++.
T Consensus 216 n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r-~~~~~~~~~~~~~~~~~ 277 (365)
T PF09797_consen 216 NYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDR-LSTLGPFKSAPENLLEN 277 (365)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHH-HhccCcccccchHHHHH
Confidence 334445688899999999999999999988888888888776544 33344443333 44444
No 302
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.81 E-value=86 Score=21.80 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=31.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 16 IKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 16 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
|.-+...+++..|..+++.-...+-+-...+--.+..++.+.|++++|...+....++.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~ 87 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD 87 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC
Confidence 34444556667777666544332222222222233455667777777777777665543
No 303
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=49.73 E-value=36 Score=17.45 Aligned_cols=49 Identities=12% Similarity=0.036 Sum_probs=28.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhc
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRN 57 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 57 (94)
|.......++..+.+ ++++++...++++...|+.++. ..+.+.+.....
T Consensus 3 p~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~~-Il~~l~~~l~~~ 51 (89)
T PF08542_consen 3 PPPEVIEEILESCLN-GDFKEARKKLYELLVEGYSASD-ILKQLHEVLVES 51 (89)
T ss_dssp --HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--HHH-HHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHh
Confidence 444455556665554 4888888888888877775543 334444544444
No 304
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=49.14 E-value=8.6 Score=18.16 Aligned_cols=21 Identities=33% Similarity=0.648 Sum_probs=14.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCc
Q 034447 57 NGKFESSLKLFDKIKQSGLTP 77 (94)
Q Consensus 57 ~g~~~~a~~~~~~m~~~g~~p 77 (94)
.-+++.|...|.++...|-.|
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP 46 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIP 46 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-
T ss_pred CCCHHHHHHHHHHHHHcCCCC
Confidence 348889999999888776544
No 305
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=48.82 E-value=32 Score=25.68 Aligned_cols=59 Identities=8% Similarity=0.182 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCchHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKVNVF-----------ICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----------t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
++++.....+++++|..+-+...+ +.||+. -|.-.=.+|.++|+-++|.++++++-...
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 456666777778888777776654 223332 23344567899999999999999986543
No 306
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=48.51 E-value=56 Score=19.29 Aligned_cols=44 Identities=5% Similarity=0.080 Sum_probs=29.8
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 31 IYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 31 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+|+.+....+..++..--.-|....+.++++.|.++..++..+.
T Consensus 77 Lfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih~~L~t~h 120 (157)
T PF07304_consen 77 LFDHLNNGKLSKPVVDKLHQLAQALQARDYDAADEIHVDLMTDH 120 (157)
T ss_dssp HHHHHHHT-S-HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHSS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Confidence 45566555566666666666666678899999999998887654
No 307
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=48.20 E-value=1.2e+02 Score=22.85 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCch---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVN---VFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
.|..+-+.|=..|+++.|..+|++-....++-- ..+|......=.++.+++.|+++.++-.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 467778888899999999999998877555332 4566666666667788888888777653
No 308
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=47.92 E-value=37 Score=26.46 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 43 NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 43 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
|...|..+-.+|..+|.+..|.++|.+...
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 889999999999999999999999987654
No 309
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=47.46 E-value=98 Score=21.78 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC---------------------------------------CCCchHHHHH-HH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDE---------------------------------------SDKVNVFICN-LI 50 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~---------------------------------------~~~p~~~t~~-~l 50 (94)
.+.+.|...|+.|+++.|.++.+.-+.. .+.||.+--. +-
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~A 269 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVA 269 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHH
Confidence 3567899999999999999998876542 2223333222 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 51 LSCLVRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 51 i~~~~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
.+++.+.|+..++-.+++.+=+..-+|+
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 3456777788888888877766554443
No 310
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.98 E-value=1e+02 Score=21.90 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHHhhCC---CC----------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 034447 22 NGNSLKALEIYNSITDES---DK----------VNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVT 81 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~~~---~~----------p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 81 (94)
.|++..|..++++....| +. ++....-.++++.. .++.+.+..++++|...|..|....
T Consensus 211 ~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~~~~l~~~g~~~~~il 282 (509)
T PRK14958 211 NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGCVTRLVEQGVDFSNAL 282 (509)
T ss_pred CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 488888888887665432 11 33344444555544 4899999999999999998875443
No 311
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=46.65 E-value=57 Score=18.86 Aligned_cols=48 Identities=10% Similarity=0.190 Sum_probs=30.4
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 034447 29 LEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTP 77 (94)
Q Consensus 29 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 77 (94)
.++.+.++++|++++..-- .+++.+.+.++.-.|.++++++.+.+...
T Consensus 6 ~~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~i 53 (145)
T COG0735 6 EDAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGI 53 (145)
T ss_pred HHHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCC
Confidence 3455666677776654443 34666666666677888888887765443
No 312
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.30 E-value=74 Score=24.03 Aligned_cols=63 Identities=21% Similarity=0.154 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCc
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ-SGLTP 77 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p 77 (94)
+.+--+.-+...|+..+|.++-.+.+- ||..-|--=+.+++..++|++-+++-+.++. -|+.|
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~P 749 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLP 749 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchh
Confidence 344555666677778888887777764 7888888888888888888888877776652 34444
No 313
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.42 E-value=1.2e+02 Score=22.26 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHHhhCC---CC----------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 034447 22 NGNSLKALEIYNSITDES---DK----------VNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDA 79 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~~~---~~----------p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 79 (94)
.|++..+..++++....+ +. ++......++++... |+...++++++++...|..|..
T Consensus 216 ~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~~ 285 (618)
T PRK14951 216 RGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ-GDGRTVVETADELRLNGLSAAS 285 (618)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 478888888877654322 11 233344455555554 8999999999999999987643
No 314
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=44.38 E-value=38 Score=16.93 Aligned_cols=18 Identities=11% Similarity=0.604 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 034447 59 KFESSLKLFDKIKQSGLT 76 (94)
Q Consensus 59 ~~~~a~~~~~~m~~~g~~ 76 (94)
-+..|.++.++|.+.|+.
T Consensus 33 GynrAariid~LE~~GiV 50 (65)
T PF09397_consen 33 GYNRAARIIDQLEEEGIV 50 (65)
T ss_dssp -HHHHHHHHHHHHHCTSB
T ss_pred CHHHHHHHHHHHHHCCCC
Confidence 367788999999999985
No 315
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=44.07 E-value=89 Score=20.32 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 034447 45 FICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAV 80 (94)
Q Consensus 45 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 80 (94)
..|. ++++.. .|+..+|.++++++...|..|-..
T Consensus 202 ~if~-l~dai~-~~~~~~A~~~l~~L~~~g~~p~~i 235 (326)
T PRK07452 202 NSLQ-LADALL-QGNTGKALALLDDLLDANEPALRI 235 (326)
T ss_pred cHHH-HHHHHH-CCCHHHHHHHHHHHHHCCCcHHHH
Confidence 3443 555444 378888888888888877766444
No 316
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=43.83 E-value=49 Score=17.33 Aligned_cols=54 Identities=13% Similarity=0.245 Sum_probs=32.6
Q ss_pred HHhcCCHHHHHH----HHHHHhhCCCCch--HHHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 19 LGKNGNSLKALE----IYNSITDESDKVN--VFICN--LILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 19 ~~~~g~~~~a~~----~~~~m~~~~~~p~--~~t~~--~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..+.|++.+|.+ .|+-....+.... ...+. .+.......|++++|.+.+++-.+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346788888844 4554444433331 22222 234445677999999999988654
No 317
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=43.43 E-value=83 Score=19.81 Aligned_cols=59 Identities=7% Similarity=0.165 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.++..++.-|-...-.++|..-+..+... .-...+ .+.+-|.+.|.+..|..=++.+.+
T Consensus 145 ~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~ 203 (243)
T PRK10866 145 RDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLR 203 (243)
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHcCchHHHHHHHHHHHH
Confidence 45667777777776677776655555431 112222 334446666666666666666654
No 318
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=43.35 E-value=40 Score=16.40 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHcCCCc
Q 034447 59 KFESSLKLFDKIKQSGLTP 77 (94)
Q Consensus 59 ~~~~a~~~~~~m~~~g~~p 77 (94)
..+...++|+-|.++|+.|
T Consensus 43 ~~~~~~~l~~~m~~kGwY~ 61 (64)
T PF07875_consen 43 CQQMQYELFNYMNQKGWYQ 61 (64)
T ss_pred HHHHHHHHHHHHHHcCCcC
Confidence 3456678899999998754
No 319
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=43.34 E-value=1.4e+02 Score=22.54 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
+...|-+-+..-..+..++.|..+|.+-... .|+...|---+.---..++.++|++++++-.
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~l 678 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEAL 678 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence 3445555555555566666666666555432 2444444333333344455666665554433
No 320
>COG5210 GTPase-activating protein [General function prediction only]
Probab=43.09 E-value=82 Score=22.11 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=40.8
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCL 54 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 54 (94)
.+...++..++..+.+.-.++.+.++|+.+...|..-....+.+++...
T Consensus 374 ~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~~ 422 (496)
T COG5210 374 VLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLL 422 (496)
T ss_pred chhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 7788899999999999999999999999998888776666666555544
No 321
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=42.86 E-value=22 Score=22.71 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCCCccHHH
Q 034447 61 ESSLKLFDKIKQSGLTPDAVT 81 (94)
Q Consensus 61 ~~a~~~~~~m~~~g~~p~~~~ 81 (94)
..|+.+|+.+.++|++|+..+
T Consensus 67 ~~Al~i~~lL~~~Gv~ps~v~ 87 (269)
T COG3294 67 NSALAIYKLLLEKGVKPSGVT 87 (269)
T ss_pred chHHHHHHHHHhcCCCccccc
Confidence 358899999999999998765
No 322
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=42.82 E-value=55 Score=17.59 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 034447 25 SLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 25 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 75 (94)
-+...+++....... ....|++.|+.++...|.-..|.++-+.+.++|.
T Consensus 47 ~eq~~qmL~~W~~~~--G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~~ 95 (96)
T cd08315 47 REQLYQMLLTWVNKT--GRKASVNTLLDALEAIGLRLAKESIQDELISSGK 95 (96)
T ss_pred HHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHcccccHHHHHHHHHHHcCC
Confidence 444555555544321 2356789999999999988888888777777664
No 323
>PF03013 Pyr_excise: Pyrimidine dimer DNA glycosylase; InterPro: IPR004260 Pyrimidine dimer DNA glycosylases are enzymes responsible for initiating the base excision repair pathway, excising pyrimidine dimers by hydrolysis of the glycosylic bond of the 5' pyrimidine, followed by the intra-pyrimidine phosphodiester bond []. One such enzyme is T4 endonuclease V, an enzyme responsible for the first step of a pyrimidine-dimer-specific excision-repair pathway []. Bacteriophage T4 that are deficient in these enzymes are extremely sensitive to UV.; PDB: 2FCC_B 1ENJ_A 1ENI_A 1ENK_A 1VAS_A 2END_A.
Probab=42.24 E-value=20 Score=20.53 Aligned_cols=27 Identities=7% Similarity=-0.069 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHH
Q 034447 27 KALEIYNSITDESDKVNVFICNLILSC 53 (94)
Q Consensus 27 ~a~~~~~~m~~~~~~p~~~t~~~li~~ 53 (94)
.=..+.+||..+|+.|+..-++.+...
T Consensus 64 rh~~l~~EM~~RGY~~~~~~~~~~~~~ 90 (130)
T PF03013_consen 64 RHQLLMAEMQRRGYKPNSPWFDDLDQW 90 (130)
T ss_dssp HHHHHHHHHHHTT---S--S----TTS
T ss_pred HHHHHHHHHHHcCCCCChhhhhccccc
Confidence 335689999999999988877755433
No 324
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=42.22 E-value=1.1e+02 Score=20.72 Aligned_cols=84 Identities=13% Similarity=0.176 Sum_probs=60.3
Q ss_pred cHHHHHHH---HHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHc---C---CCc
Q 034447 8 SISSYSSY---IKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLV-RNGKFESSLKLFDKIKQS---G---LTP 77 (94)
Q Consensus 8 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~-~~g~~~~a~~~~~~m~~~---g---~~p 77 (94)
|...|.++ +..+.+.|.+..|.++-+-+....-.-|...---+|+.|+ +++.++-.+++.++.... . .-|
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP 178 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP 178 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc
Confidence 45555544 5678889999999999999987765557777778888886 667888888888886652 1 123
Q ss_pred cHHHHHHHHHHhhcc
Q 034447 78 DAVTYNTVYQSDHIT 92 (94)
Q Consensus 78 ~~~~~~~ll~~~~~~ 92 (94)
...|+..+.-+..+
T Consensus 179 -n~a~S~aLA~~~l~ 192 (360)
T PF04910_consen 179 -NFAFSIALAYFRLE 192 (360)
T ss_pred -cHHHHHHHHHHHhc
Confidence 35577777665543
No 325
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=42.07 E-value=42 Score=19.30 Aligned_cols=21 Identities=24% Similarity=0.722 Sum_probs=13.4
Q ss_pred CHHHHHHHH--HHHHHcCCCccH
Q 034447 59 KFESSLKLF--DKIKQSGLTPDA 79 (94)
Q Consensus 59 ~~~~a~~~~--~~m~~~g~~p~~ 79 (94)
.+++|..++ +++.+.|+.||.
T Consensus 100 ~FDeARliy~~~~f~~NgI~pdG 122 (128)
T PF09435_consen 100 NFDEARLIYTERRFKKNGIGPDG 122 (128)
T ss_pred CHHHHHHHHHHHHHHHcCCCCCC
Confidence 556677666 346677777763
No 326
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=41.69 E-value=30 Score=23.36 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 034447 59 KFESSLKLFDKIKQSGLTPDAVTYNTVY 86 (94)
Q Consensus 59 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll 86 (94)
.++.|.++.+.+++-|+.+|..||--..
T Consensus 281 p~erAekf~k~irkLG~~~dG~sylD~F 308 (350)
T PF14744_consen 281 PYERAEKFNKGIRKLGLSDDGQSYLDQF 308 (350)
T ss_pred CHHHHHHHHHHHHHcCCCCCcchHHHHH
Confidence 5688999999999999988888885443
No 327
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=41.60 E-value=1.2e+02 Score=21.20 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=44.7
Q ss_pred ccHHHHHHHHHHH-HhcCCHHHHHHHHHHHhhC--CCC-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHH
Q 034447 7 TSISSYSSYIKFL-GKNGNSLKALEIYNSITDE--SDK-VNVFICNLILSCLVRNGKFESSLKLFDKIKQS-GLTPDAVT 81 (94)
Q Consensus 7 p~~~~~~~ll~~~-~~~g~~~~a~~~~~~m~~~--~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~ 81 (94)
|+...|...-.-+ ...|++++|.+.|+..... ..+ .....+--+.-++.-..+|++|.+.|.++.+. ...+..++
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~ 343 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYA 343 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHH
Confidence 5555554444333 3458899999988865421 111 12233333444567778999999999998765 44444444
Q ss_pred H
Q 034447 82 Y 82 (94)
Q Consensus 82 ~ 82 (94)
|
T Consensus 344 Y 344 (468)
T PF10300_consen 344 Y 344 (468)
T ss_pred H
Confidence 4
No 328
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=41.47 E-value=56 Score=19.99 Aligned_cols=51 Identities=4% Similarity=0.173 Sum_probs=35.2
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFE 61 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 61 (94)
.+.......++..|.+.|+.+..++++-.+-- ..--.+.++.-|-+.|-++
T Consensus 19 ~lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD~-----~~LDidq~i~lC~~~~Lyd 69 (196)
T PF12816_consen 19 SLPPEVFKALVEHYASKGRLERLEQLILHLDP-----SSLDIDQVIKLCKKHGLYD 69 (196)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCH-----HhcCHHHHHHHHHHCCCCC
Confidence 35567889999999999999999988876653 3333344555565555444
No 329
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=41.31 E-value=66 Score=18.06 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=11.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcc
Q 034447 56 RNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 56 ~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
-.|+..++++.++++.+.|..|.
T Consensus 26 ~~~d~~~~l~~~~~l~~~G~d~~ 48 (143)
T PF12169_consen 26 LEGDAAEALELLNELLEQGKDPK 48 (143)
T ss_dssp HTT-HHHHHHHHHHHHHCT--HH
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 44555566666666655555543
No 330
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=40.95 E-value=1.2e+02 Score=21.12 Aligned_cols=57 Identities=19% Similarity=0.107 Sum_probs=33.7
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.+...|..|=+...+.|+++-|+++|.+..+ |..|+--|.-.|+.+...++.+.-..
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566777788888888888888888776653 33444444455555444444444333
No 331
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=40.55 E-value=1.4e+02 Score=21.60 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSIT-DESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
|...|...+..+-+.+.+.+...+|.+|. ..+-.||...|.+. --|-...+++.|..+|-+-.+-
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHHhhc
Confidence 78888888888888888999999999887 45667888877763 3344455588888887665443
No 332
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=40.24 E-value=51 Score=21.87 Aligned_cols=26 Identities=19% Similarity=0.510 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 47 CNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 47 ~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
-=.+++.|.+.|.+++|.++.....+
T Consensus 109 lP~Lm~~ci~~g~y~eALel~~~~~~ 134 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELSAHVRR 134 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHHHHHHH
Confidence 34678999999999999998766543
No 333
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=40.21 E-value=43 Score=16.70 Aligned_cols=18 Identities=17% Similarity=0.626 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 034447 59 KFESSLKLFDKIKQSGLT 76 (94)
Q Consensus 59 ~~~~a~~~~~~m~~~g~~ 76 (94)
-+..|.++.++|.+.|+.
T Consensus 32 GynrAariid~lE~~GiV 49 (63)
T smart00843 32 GYNRAARLIDQLEEEGIV 49 (63)
T ss_pred chhHHHHHHHHHHHCcCC
Confidence 356788999999999875
No 334
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=40.21 E-value=60 Score=17.24 Aligned_cols=25 Identities=16% Similarity=0.390 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 46 ICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 46 t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
.|..+++.+...++.+++..+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l 28 (88)
T TIGR02531 4 LLDELFDAILTLKNREECYRFFDDI 28 (88)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4556666666667777766666665
No 335
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=40.18 E-value=95 Score=19.56 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=41.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 034447 15 YIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRN-GKFESSLKLFDKIKQ 72 (94)
Q Consensus 15 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~-g~~~~a~~~~~~m~~ 72 (94)
+.+.+-++++++++...++++...+..++..--|.+-.+|-.. |....+++++.....
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4566778899999999999999888878888778777777433 555666666666543
No 336
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=39.68 E-value=45 Score=15.67 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=14.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 55 VRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 55 ~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
-..|--.+++++.-++.+.|+.|.
T Consensus 15 LntgLd~etL~ici~L~e~GVnPe 38 (48)
T PF12554_consen 15 LNTGLDRETLSICIELCENGVNPE 38 (48)
T ss_pred HcCCCCHHHHHHHHHHHHCCCCHH
Confidence 344555666666666666666654
No 337
>PRK14700 recombination factor protein RarA; Provisional
Probab=39.68 E-value=1e+02 Score=20.48 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCccHHHH
Q 034447 46 ICNLILSCLVRN---GKFESSLKLFDKIKQSGLTPDAVTY 82 (94)
Q Consensus 46 t~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~ 82 (94)
.|+. |+++.++ .|++.|+=.+.+|.+.|..|....=
T Consensus 126 HYd~-iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaR 164 (300)
T PRK14700 126 FYEQ-LSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIAR 164 (300)
T ss_pred hHHH-HHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHH
Confidence 4443 6776554 5888999999999999877765543
No 338
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=39.59 E-value=1.2e+02 Score=20.55 Aligned_cols=47 Identities=6% Similarity=0.101 Sum_probs=38.5
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhc
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRN 57 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 57 (94)
.|.-..|..+...+++.=.+.+...+|+.+... ..-|.-++..||..
T Consensus 275 ~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsm 321 (370)
T KOG4567|consen 275 HPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSM 321 (370)
T ss_pred CccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHH
Confidence 788889999999999999999999999999864 34477777777643
No 339
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=39.46 E-value=78 Score=18.39 Aligned_cols=40 Identities=18% Similarity=0.003 Sum_probs=31.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 034447 15 YIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCL 54 (94)
Q Consensus 15 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 54 (94)
+|....+......+.++.+.+.+.|+..+..|-.-.+.-.
T Consensus 6 ~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~el 45 (146)
T TIGR01529 6 RIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLREL 45 (146)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 5666778888889999999999999888777777666543
No 340
>PF07864 DUF1651: Protein of unknown function (DUF1651); InterPro: IPR012447 The proteins in this entry have not been characterised.
Probab=39.40 E-value=38 Score=17.17 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHcCCCc
Q 034447 59 KFESSLKLFDKIKQSGLTP 77 (94)
Q Consensus 59 ~~~~a~~~~~~m~~~g~~p 77 (94)
..++|++.+++|.+.|..+
T Consensus 51 ~~~~A~e~W~~L~~~GW~~ 69 (75)
T PF07864_consen 51 TREEARELWKELQKTGWRR 69 (75)
T ss_pred EHHHHHHHHHHHHHcCCEE
Confidence 4677888888888887654
No 341
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=39.30 E-value=64 Score=17.32 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCC
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNG--KFESSLKLFDKIKQSGL 75 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~~g~ 75 (94)
...++.-|...+++++|...+.++......+ ..-..+|..+...+ .-+....++..+.+.+.
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~--~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPEQHH--EVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCcchH--HHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 3457778888999999999999987543322 23334444444443 33345556666665554
No 342
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=39.22 E-value=1.7e+02 Score=22.07 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHHhhCC---CC----------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 034447 22 NGNSLKALEIYNSITDES---DK----------VNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDA 79 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~~~---~~----------p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 79 (94)
.|++..+..++++....| +. .+......+++++.+ ++...++.++++|...|+.+..
T Consensus 211 ~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 211 AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHH
Confidence 478888888887665422 11 233345555665555 8899999999999999987643
No 343
>PLN03025 replication factor C subunit; Provisional
Probab=39.11 E-value=1.1e+02 Score=19.97 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=43.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-C-C----------CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDE-S-D----------KVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~-~----------~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 75 (94)
+......++..+ .|++..+...++..... + + .+....-..+++.. ..+++++|...+.+|...|+
T Consensus 179 ~~~~l~~i~~~~--~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~-~~~~~~~a~~~l~~ll~~g~ 255 (319)
T PLN03025 179 VPEGLEAIIFTA--DGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNC-LKGKFDDACDGLKQLYDLGY 255 (319)
T ss_pred CHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCC
Confidence 334444444432 37788887777644321 1 1 12223334445544 45889999999999999999
Q ss_pred CccHHHH
Q 034447 76 TPDAVTY 82 (94)
Q Consensus 76 ~p~~~~~ 82 (94)
.|.....
T Consensus 256 ~~~~Il~ 262 (319)
T PLN03025 256 SPTDIIT 262 (319)
T ss_pred CHHHHHH
Confidence 8865443
No 344
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=39.06 E-value=32 Score=22.89 Aligned_cols=29 Identities=24% Similarity=0.213 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHhhC
Q 034447 10 SSYSSYIKFLGKN-----GNSLKALEIYNSITDE 38 (94)
Q Consensus 10 ~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~ 38 (94)
..+.-+++.+.+. +++.+|.+++++|.+.
T Consensus 20 ~~~~eli~~~~~~~gF~a~~l~eA~~I~~~m~~~ 53 (318)
T COG1899 20 ISVSELIDEMYKTGGFQARRLAEAVEILREMLES 53 (318)
T ss_pred CcHHHHHHHHHhhccccchhHHHHHHHHHHHHhh
Confidence 3667778866655 4788999999999875
No 345
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=39.01 E-value=1.7e+02 Score=22.17 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH----HHHcCCCccHHHH
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDK----IKQSGLTPDAVTY 82 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~----m~~~g~~p~~~~~ 82 (94)
-|.-+|++..-++.|..++++..+ .++-+...|-+-..-=-..|+.+.+.+++++ +...|+..+...|
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 355677778888999999998875 3555677776666666788899988888766 3456777766555
No 346
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.76 E-value=1.4e+02 Score=21.20 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHHhhCC--CC----------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 034447 22 NGNSLKALEIYNSITDES--DK----------VNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDA 79 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~~~--~~----------p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 79 (94)
.|++..+...++.+...+ +. +.......++++. ..++.++|+.+++++...|..|..
T Consensus 208 ~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~~ 276 (504)
T PRK14963 208 DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAART 276 (504)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHH
Confidence 377888887777765433 22 1222244455555 558999999999999999977653
No 347
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=38.50 E-value=1.3e+02 Score=20.76 Aligned_cols=26 Identities=8% Similarity=-0.222 Sum_probs=13.8
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCchH
Q 034447 19 LGKNGNSLKALEIYNSITDESDKVNV 44 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~~~~~~p~~ 44 (94)
+-+.+++..|.++|+++..+...|..
T Consensus 140 l~n~~dy~aA~~~~~~L~~r~l~~~~ 165 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRRLLSAVN 165 (380)
T ss_pred HHHhcChHHHHHHHHHHHhcccChhh
Confidence 33455566666666666555444433
No 348
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.44 E-value=1.2e+02 Score=20.21 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=40.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 18 FLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 18 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
.....|++.++..+|+...... +-+.-.--.+..+|...|+++.|..+++.+..+-
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~ 198 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence 3456788888888888765431 1134555677888999999999999998876543
No 349
>PHA02599 dsbA double-stranded DNA binding protein; Provisional
Probab=38.22 E-value=66 Score=17.21 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=14.4
Q ss_pred CCCccHHHHHHHHHHhhcc
Q 034447 74 GLTPDAVTYNTVYQSDHIT 92 (94)
Q Consensus 74 g~~p~~~~~~~ll~~~~~~ 92 (94)
.+..|..+||-|+..||+.
T Consensus 51 E~GvdGK~Fnkl~klYHkq 69 (91)
T PHA02599 51 ELGVDGKMFNKLFKLYHKQ 69 (91)
T ss_pred HhCCCHHHHHHHHHHHHHH
Confidence 3445788899999988864
No 350
>PF04269 DUF440: Protein of unknown function, DUF440; InterPro: IPR007376 This entry represents hypothetical proteins such as HI1450, which is believed to act as a putative dsDNA mimic. HI1450 is an acidic protein with a core structure consisting of alpha(2)-beta(4), where the alpha-helices are packed against the side of an anti-parallel 4-stranded beta meander. As such, it has some similarity to the dsDNA mimics uracil-DNA glycosylase inhibitor and nuclease A inhibitor (NuiA), including the distribution of surface charges and the position of the hydrophobic cavity []. DNA mimics act to inhibit or regulate dsDNA-binding proteins. ; PDB: 1NNV_A.
Probab=38.16 E-value=62 Score=17.86 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhCCCCc-hHHHHHH
Q 034447 25 SLKALEIYNSITDESDKV-NVFICNL 49 (94)
Q Consensus 25 ~~~a~~~~~~m~~~~~~p-~~~t~~~ 49 (94)
.+.|-.+|-+|...++.| |...||.
T Consensus 10 id~AYDiFLE~A~dNL~paDi~lF~~ 35 (103)
T PF04269_consen 10 IDQAYDIFLELAPDNLDPADILLFNL 35 (103)
T ss_dssp HHHHHHHHHHH-STTS-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 366777888887777776 6666654
No 351
>PRK04841 transcriptional regulator MalT; Provisional
Probab=37.85 E-value=1.7e+02 Score=21.87 Aligned_cols=62 Identities=5% Similarity=0.050 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDE----SDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.+..+-..+...|++++|...+.+.... +-......+..+...+...|+.++|.+.+++...
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455666779999999988876532 2112344555566677889999999999888743
No 352
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=37.73 E-value=14 Score=25.98 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHhhCCCCchHHH----HHHHHHHHHhcC-CHHHHHH
Q 034447 23 GNSLKALEIYNSITDESDKVNVFI----CNLILSCLVRNG-KFESSLK 65 (94)
Q Consensus 23 g~~~~a~~~~~~m~~~~~~p~~~t----~~~li~~~~~~g-~~~~a~~ 65 (94)
|..-.|.+++.++.++|++||++| ....+++|+-.| -++++.+
T Consensus 239 gl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ee~~~ 286 (561)
T COG2987 239 GLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTVEEADE 286 (561)
T ss_pred EEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCHHHHHH
Confidence 345678899999999999998876 334566777776 3444443
No 353
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.68 E-value=57 Score=22.79 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=38.4
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 034447 31 IYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLT 76 (94)
Q Consensus 31 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 76 (94)
++..+...|+..+..|++..|..+...+..+.++++++-+--+|.+
T Consensus 304 l~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGsk 349 (436)
T KOG2058|consen 304 LSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSK 349 (436)
T ss_pred HHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccH
Confidence 3344555677779999999999999999999999999999888754
No 354
>PF06252 DUF1018: Protein of unknown function (DUF1018); InterPro: IPR009363 This family consists of several bacterial and phage proteins, related to Gp16 of phage Mu, of unknown function.
Probab=37.31 E-value=75 Score=17.57 Aligned_cols=34 Identities=9% Similarity=0.125 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHH-h----cCCHHHHHHHHHHHhhCCCC
Q 034447 8 SISSYSSYIKFLG-K----NGNSLKALEIYNSITDESDK 41 (94)
Q Consensus 8 ~~~~~~~ll~~~~-~----~g~~~~a~~~~~~m~~~~~~ 41 (94)
|..+|..+|.... + .=...++..++++|...|++
T Consensus 2 ddd~YR~~L~~~~Gk~S~k~lt~~el~~vl~~l~~~G~k 40 (119)
T PF06252_consen 2 DDDTYRALLQRVTGKSSSKDLTEAELEKVLDELKRLGFK 40 (119)
T ss_pred CHHHHHHHHHHHhChhhHHHCCHHHHHHHHHHHHHccCc
Confidence 5678888888632 2 23578889999999999984
No 355
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.16 E-value=69 Score=17.08 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESD 40 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~ 40 (94)
++++.+.++.--++|.++++-|.++|-
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 456667777778888888888887653
No 356
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=37.12 E-value=1.4e+02 Score=20.57 Aligned_cols=30 Identities=7% Similarity=-0.037 Sum_probs=18.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 034447 52 SCLVRNGKFESSLKLFDKIKQSGLTPDAVT 81 (94)
Q Consensus 52 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 81 (94)
..+.+.+++..|.++|+++.+....|+...
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~ 167 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHT 167 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhh
Confidence 345566777777777777766654444443
No 357
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=36.68 E-value=34 Score=14.43 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=9.4
Q ss_pred HHHHHHHHHHcCCCccHH
Q 034447 63 SLKLFDKIKQSGLTPDAV 80 (94)
Q Consensus 63 a~~~~~~m~~~g~~p~~~ 80 (94)
|.++.+.+.+.|-.|+-+
T Consensus 14 a~rv~~f~~~ngRlPnyV 31 (33)
T PF09373_consen 14 ASRVNNFYESNGRLPNYV 31 (33)
T ss_pred HHHHHHHHHHcCCCCCee
Confidence 444555555555556543
No 358
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.98 E-value=1.3e+02 Score=19.78 Aligned_cols=35 Identities=11% Similarity=-0.078 Sum_probs=15.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV 42 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 42 (94)
|......-++..|. .+++++|.+++.++-+.|+.|
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 44444444444332 233455555555554445444
No 359
>PF14162 YozD: YozD-like protein
Probab=35.90 E-value=56 Score=15.66 Aligned_cols=18 Identities=11% Similarity=0.342 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCCccHH
Q 034447 63 SLKLFDKIKQSGLTPDAV 80 (94)
Q Consensus 63 a~~~~~~m~~~g~~p~~~ 80 (94)
|.-+|.++.+.|+.|+..
T Consensus 14 AefFy~eL~kRGyvP~e~ 31 (57)
T PF14162_consen 14 AEFFYHELVKRGYVPTEE 31 (57)
T ss_pred HHHHHHHHHHccCCCcHH
Confidence 455678899999988764
No 360
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=35.77 E-value=49 Score=19.90 Aligned_cols=22 Identities=14% Similarity=0.427 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHcCCCccHH
Q 034447 59 KFESSLKLFDKIKQSGLTPDAV 80 (94)
Q Consensus 59 ~~~~a~~~~~~m~~~g~~p~~~ 80 (94)
+-+.+.+...+++++|+.||.+
T Consensus 49 rg~av~~a~~~L~~~Gf~PDvI 70 (171)
T PF12000_consen 49 RGQAVARAARQLRAQGFVPDVI 70 (171)
T ss_pred HHHHHHHHHHHHHHcCCCCCEE
Confidence 3456777888888999999865
No 361
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=35.75 E-value=87 Score=17.81 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESD 40 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~ 40 (94)
.+++.+-++.-.++|.++++-|.++|-
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 456667778888899999888887653
No 362
>smart00535 RIBOc Ribonuclease III family.
Probab=35.21 E-value=80 Score=17.27 Aligned_cols=31 Identities=3% Similarity=0.162 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 42 VNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 42 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.-..++.++|.+....+..+++.+++.++..
T Consensus 93 ~~a~~~eAliGAi~ld~g~~~~~~~i~~~~~ 123 (129)
T smart00535 93 ILADVFEALIGAIYLDSGLEAAREFIRDLLG 123 (129)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567889999998888889999999988764
No 363
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.90 E-value=1.5e+02 Score=22.56 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKL 66 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 66 (94)
..-|-.+..+|.+.|+.++|.+.+...... . -...+|.+.|++.+|.+.
T Consensus 744 PIGy~PFVe~c~~~~n~~EA~KYiprv~~l------~---ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 744 PIGYLPFVEACLKQGNKDEAKKYIPRVGGL------Q---EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred CCCchhHHHHHHhcccHHHHhhhhhccCCh------H---HHHHHHHHhccHHHHHHH
Confidence 344555666666666666666655444311 1 456667777777777664
No 364
>COG3825 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.70 E-value=1.5e+02 Score=20.15 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=37.8
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 30 EIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 30 ~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
.+|.+++...++.+...|-.|+.+.-+.= .+--.+.|..+.+.-..||...+.-+=.
T Consensus 4 ~ff~~lr~A~vpvs~re~llL~egl~~~v-~~~~ld~Fy~LaraaLvkde~~ldkfd~ 60 (393)
T COG3825 4 CFFNELRAARVPVSVREYLLLLEGLKQTV-VEYDLDLFYYLARAALVKDERHLDKFDQ 60 (393)
T ss_pred HHHhHhhhcccccccchHHHHHHHHhhhh-hhhhhHHHHHHHHHhcCccHHHHHHHHH
Confidence 46778888888888888888888765432 2222566666666666777766654433
No 365
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=34.62 E-value=1.3e+02 Score=19.41 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=48.6
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV---NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
....+|..+...+-+.|.++.|...+..+...+... +....-.-.+-.-..|+..+|+..+++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678889999999999999999999887643211 223333345566778899999998888776
No 366
>PRK07914 hypothetical protein; Reviewed
Probab=34.35 E-value=83 Score=20.56 Aligned_cols=27 Identities=7% Similarity=0.033 Sum_probs=22.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHH
Q 034447 55 VRNGKFESSLKLFDKIKQSGLTPDAVT 81 (94)
Q Consensus 55 ~~~g~~~~a~~~~~~m~~~g~~p~~~~ 81 (94)
.-.|+..+|..+++++...|..|-...
T Consensus 206 i~~g~~~~A~~~l~~L~~~ge~p~~il 232 (320)
T PRK07914 206 AVAGDVAGAAEALRWAMMRGEPHVVLA 232 (320)
T ss_pred HHCCCHHHHHHHHHHHHHCCCchHHHH
Confidence 456899999999999999998885553
No 367
>PF09197 Rap1-DNA-bind: Rap1, DNA-binding; InterPro: IPR015280 Members of this entry, which are predominantly found in the yeast protein Rap1, assume a secondary structure consisting of a three-helix bundle and an N-terminal arm. They contain an Arg-Asp-Arg-Lys sequence that interacts with an ACAregion in the 3, region of the DNA-binding site []. ; PDB: 1IGN_A 3UKG_A.
Probab=34.18 E-value=87 Score=17.35 Aligned_cols=52 Identities=10% Similarity=0.203 Sum_probs=38.2
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 034447 29 LEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAV 80 (94)
Q Consensus 29 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 80 (94)
..+|+.+-......+..+|..--+-+.....++.-++.++.-.+.|-.|.+.
T Consensus 49 ~~fF~~~~~~~p~HT~~sWRDR~RKfv~~~gi~~Yi~Yye~~~~~g~~Pe~m 100 (105)
T PF09197_consen 49 RSFFKDLARKNPRHTENSWRDRYRKFVSEYGIQSYIEYYEKCRANGEEPEPM 100 (105)
T ss_dssp TTHHHHHHHHTTTS-HHHHHHHHHHTHHHH-HHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHcCCccchhHHHHHHHHHHHHcChHHHHHHHHHHHHcCCCCccc
Confidence 6688888877777788899988888888888999999999999999888654
No 368
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.15 E-value=96 Score=22.55 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=47.5
Q ss_pred Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchH--HHHHHHHHHHHhcCCHHHHHHHHHH
Q 034447 6 KT-SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNV--FICNLILSCLVRNGKFESSLKLFDK 69 (94)
Q Consensus 6 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~ 69 (94)
+| |...||-|=..++...+.++|+.-|.+-.+. +|+. +-||. --+|...|.+++|...|=.
T Consensus 460 ~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNl-gIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 460 KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNL-GISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhh-hhhhhhhhhHHHHHHHHHH
Confidence 45 7889999999999999999999999988763 5643 34554 4457888999999987644
No 369
>PF08986 DUF1889: Domain of unknown function (DUF1889); InterPro: IPR015079 This family consist of hypothetical bacterial proteins. ; PDB: 2JN8_A 2ES9_A.
Probab=33.93 E-value=85 Score=17.20 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 034447 25 SLKALEIYNSITDESDKV---NVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTP 77 (94)
Q Consensus 25 ~~~a~~~~~~m~~~~~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 77 (94)
.++|.+++..|-..--.| |..|-.-++..+-..|-+..+.++..+=.++|+.|
T Consensus 25 IdKALDFIggMntSas~P~sMdESTAKGi~KyL~elGvPasa~dv~aRg~qeGWn~ 80 (119)
T PF08986_consen 25 IDKALDFIGGMNTSASVPHSMDESTAKGIFKYLKELGVPASAADVTARGEQEGWNP 80 (119)
T ss_dssp HHHHHHHHHTS-TT-SS--HCCCHHHHHHHHHHHHCT----HHHHHHHHHHCT--H
T ss_pred HHHHHHHhcccccCCCCCCccchHHHHHHHHHHHHcCCCCCHHHHHHhcccccCCh
Confidence 467777777775432223 67788888888888888888888888888888765
No 370
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=33.28 E-value=1.8e+02 Score=20.64 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 42 VNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 42 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
.+...|+.+-.+|.+.|++++|+..|++-.+..
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~ 105 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN 105 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 478889999999999999999999999976643
No 371
>PRK12798 chemotaxis protein; Reviewed
Probab=33.22 E-value=1.7e+02 Score=20.48 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=39.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 034447 22 NGNSLKALEIYNSITDESDKVNVFICNLILSCLVRN-GKFESSLKLFDKIK 71 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~-g~~~~a~~~~~~m~ 71 (94)
.|+.+++.+.+..+....+++...-|-+|+.+-.-. .++.+|+.+|++-+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aR 175 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQAR 175 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 578888888888888777888888888888876544 48888888887753
No 372
>cd08320 Pyrin_NALPs Pyrin death domain found in NALP proteins. Pyrin Death Domain found in NALP (NACHT, LRR and PYD domains) proteins including NALP1 (CARD7, NLRP1), NALP3 (NLRP3, Cryopyrin, CIAS1), and NALP12 (NLRP12, Monarch-1), among others. Mammals contains at least 14 NALP proteins, named NALP1-14 (or NLRP1-14). NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case of NALPs. The NBS-LRR family is also referred to as the NLR (Nod-like Receptor) or CATERPILLER (for CARD, transcription enhancer, R-(purine)-binding, pyrin, lots of LRRs) family. NALP1 contains an additional Caspase activation and recruitment domain (CARD) at the C-terminus. NALP1 and NALP3 are both involved in the assembly
Probab=33.20 E-value=37 Score=17.90 Aligned_cols=27 Identities=15% Similarity=0.433 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 46 ICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 46 t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.-+.|+..|....=++-+.++|++|..
T Consensus 47 La~lLv~~y~~~~A~~~t~~if~~mn~ 73 (86)
T cd08320 47 LAELLVEHYGGQQAWDVTLSIFEKMNL 73 (86)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHCh
Confidence 345566666666677778888887754
No 373
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=32.96 E-value=60 Score=17.19 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhCCCCchHHHH
Q 034447 26 LKALEIYNSITDESDKVNVFIC 47 (94)
Q Consensus 26 ~~a~~~~~~m~~~~~~p~~~t~ 47 (94)
+...+..++++..|+.||+.-+
T Consensus 12 ~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 12 ELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEEE
Confidence 3445566777888888876433
No 374
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=32.63 E-value=1.9e+02 Score=20.71 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=35.6
Q ss_pred CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 41 KVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 41 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
..+...|.++--.....|++++|...+++...-+ |+...|..+-..
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~ 462 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKV 462 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 3455778887666777899999999999988766 677777666555
No 375
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=32.57 E-value=45 Score=21.98 Aligned_cols=50 Identities=10% Similarity=0.193 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 034447 23 GNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLT 76 (94)
Q Consensus 23 g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 76 (94)
..++....+++..++. .|++.|-+.||-+++. ..++..++++++.+.|+.
T Consensus 194 A~Y~~SL~~L~~~k~~--~P~i~TKSgiMlGLGE--t~~Ev~e~m~DLr~~gvd 243 (306)
T COG0320 194 ATYERSLSLLERAKEL--GPDIPTKSGLMVGLGE--TDEEVIEVMDDLRSAGVD 243 (306)
T ss_pred CcHHHHHHHHHHHHHh--CCCcccccceeeecCC--cHHHHHHHHHHHHHcCCC
Confidence 4578888888877764 4889999998887654 456888899999888753
No 376
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=32.04 E-value=1.9e+02 Score=21.13 Aligned_cols=60 Identities=12% Similarity=0.032 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHcC
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKF-------ESSLKLFDKIKQSG 74 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~-------~~a~~~~~~m~~~g 74 (94)
++|-.|.|+|++++|.++.++... .+......|-..+..|..+.+- +....-|++..+..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 567777888888888888855553 3344556667777777665322 24445566555443
No 377
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=31.87 E-value=15 Score=26.00 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCC
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLV--RNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~--~~g~~~~a~~~~~~m~~~g~ 75 (94)
...+++.+.|+++.|..+++++....+.|.....-.++.+-. ..|+++.|++.+........
T Consensus 29 ~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l 92 (536)
T PF04348_consen 29 LAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQL 92 (536)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccC
Confidence 345678888999999999999997777787777778887754 56889999998876443333
No 378
>cd08304 DD_superfamily The Death Domain Superfamily of protein-protein interaction domains. The Death Domain (DD) superfamily includes the DD, Pyrin, CARD (Caspase activation and recruitment domain) and DED (Death Effector Domain) families. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. They are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways including those that impact innate immunity, inflammation, differentiation, and cancer.
Probab=31.69 E-value=75 Score=15.84 Aligned_cols=13 Identities=8% Similarity=0.179 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHcC
Q 034447 62 SSLKLFDKIKQSG 74 (94)
Q Consensus 62 ~a~~~~~~m~~~g 74 (94)
.+.++++.+.+.|
T Consensus 34 ~a~~ll~~l~~~~ 46 (69)
T cd08304 34 AANELLNILESQY 46 (69)
T ss_pred HHHHHHHHHHHhC
Confidence 3444444444443
No 379
>PF13963 Transpos_assoc: Transposase-associated domain
Probab=31.57 E-value=17 Score=18.61 Aligned_cols=25 Identities=4% Similarity=-0.087 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHhhCCCCchHHHH
Q 034447 23 GNSLKALEIYNSITDESDKVNVFIC 47 (94)
Q Consensus 23 g~~~~a~~~~~~m~~~~~~p~~~t~ 47 (94)
........|.+.+...|+.|+...|
T Consensus 48 ~~~~~~~~V~~HL~~~Gf~~~Y~~W 72 (77)
T PF13963_consen 48 EKRQSRDDVHEHLVCRGFMPNYTVW 72 (77)
T ss_pred CccCCHHHHHHHHHHhCCCCCCCee
Confidence 3455666777777777777765544
No 380
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=31.47 E-value=1.9e+02 Score=20.55 Aligned_cols=79 Identities=11% Similarity=0.097 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc-CCCccH-------
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRN-GKFESSLKLFDKIKQS-GLTPDA------- 79 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~-g~~~~a~~~~~~m~~~-g~~p~~------- 79 (94)
...+..++++....|-.+...-+.+.+....+.+ ...-..+.....-. ..-.+..+.+.++.+. ...+..
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~ 418 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESAL 418 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHH
Confidence 4567778888888887776666666666655543 22223333333332 3334445555555443 444443
Q ss_pred HHHHHHHHH
Q 034447 80 VTYNTVYQS 88 (94)
Q Consensus 80 ~~~~~ll~~ 88 (94)
.+|.++++-
T Consensus 419 l~~~~lv~~ 427 (574)
T smart00638 419 LAYGSLVRR 427 (574)
T ss_pred HHHHHHHHH
Confidence 445555543
No 381
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=31.45 E-value=1.2e+02 Score=18.09 Aligned_cols=34 Identities=6% Similarity=0.022 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 034447 42 VNVFICNLILSCLVRNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 42 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 75 (94)
.|.++|--..+.|-.-.++++..+.++++.+.+-
T Consensus 119 lD~VAYvRFASVYr~F~dv~~F~e~i~~l~~~~~ 152 (156)
T COG1327 119 LDEVAYVRFASVYRSFKDVDDFEEEIEELTKEGE 152 (156)
T ss_pred cchhhhhhhhhHhcccCCHHHHHHHHHHHHhccc
Confidence 6899999999999999999999999999887543
No 382
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=31.33 E-value=97 Score=20.47 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=22.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHH
Q 034447 54 LVRNGKFESSLKLFDKIKQSGLTPDAV 80 (94)
Q Consensus 54 ~~~~g~~~~a~~~~~~m~~~g~~p~~~ 80 (94)
....|+..+|..+++++..+|.+|-..
T Consensus 218 ail~g~~~~a~~~l~~L~~~ge~p~~i 244 (334)
T COG1466 218 ALLKGDVKKALRLLRDLLLEGEEPLKL 244 (334)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 356799999999999999999877433
No 383
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=31.23 E-value=2e+02 Score=20.56 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=37.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 034447 18 FLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDK 69 (94)
Q Consensus 18 ~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~ 69 (94)
++.+.+++++|.--|++-+. +.| +...|.-|+.+|...|.+.+|.-+-+.
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred HHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 45566788888888877654 344 888999999999999999888765443
No 384
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=31.21 E-value=71 Score=21.62 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHhcCCHHHHH
Q 034447 43 NVFICNLILSCLVRNGKFESSL 64 (94)
Q Consensus 43 ~~~t~~~li~~~~~~g~~~~a~ 64 (94)
...+|.-|+.++|..|+.+-.+
T Consensus 320 hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 320 HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHhhhHHHHHHhcCChHHHHH
Confidence 3456777777777777665443
No 385
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=30.93 E-value=52 Score=13.78 Aligned_cols=32 Identities=9% Similarity=0.014 Sum_probs=15.8
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 034447 31 IYNSITDESDKVNVFICNLILSCLVRNGKFESSLKL 66 (94)
Q Consensus 31 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 66 (94)
.++.+.+.|+..+ ..- -......++.+.|...
T Consensus 4 ~v~~L~~mGf~~~-~a~---~aL~~~~~d~~~A~~~ 35 (37)
T smart00165 4 KIDQLLEMGFSRE-EAL---KALRAANGNVERAAEY 35 (37)
T ss_pred HHHHHHHcCCCHH-HHH---HHHHHhCCCHHHHHHH
Confidence 3455566676555 111 1122334567777654
No 386
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=30.88 E-value=19 Score=25.48 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHhhCCCCchHHHH----HHHHHHHHhcC-CHHHHHHH
Q 034447 23 GNSLKALEIYNSITDESDKVNVFIC----NLILSCLVRNG-KFESSLKL 66 (94)
Q Consensus 23 g~~~~a~~~~~~m~~~~~~p~~~t~----~~li~~~~~~g-~~~~a~~~ 66 (94)
|.+-.+.++|+++.++|+.||++|= ...+.+|+-.| .++++.++
T Consensus 230 g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~~~l 278 (545)
T TIGR01228 230 GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDADKL 278 (545)
T ss_pred EeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHHHHH
Confidence 4457788999999999999988763 33455677777 55665543
No 387
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=30.52 E-value=98 Score=16.90 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 034447 58 GKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 58 g~~~~a~~~~~~m~~~g~ 75 (94)
.+++.+..+|.++.+.|.
T Consensus 38 e~i~s~~~Lf~~Lee~gl 55 (97)
T cd08790 38 GLIRSGRDFLLALERQGR 55 (97)
T ss_pred cCcCcHHHHHHHHHHcCC
Confidence 444445555555554443
No 388
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=30.44 E-value=2.6e+02 Score=21.71 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhCC--CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh
Q 034447 25 SLKALEIYNSITDES--DKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQSD 89 (94)
Q Consensus 25 ~~~a~~~~~~m~~~~--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 89 (94)
.+....+........ +.-+..-|--+.+++.+.|++.+|+++|..+......-+...|--+-++|
T Consensus 393 ~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 393 RELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred cchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 333333444455555 44477889999999999999999999999998775555555665554443
No 389
>PF08343 RNR_N: Ribonucleotide reductase N-terminal; InterPro: IPR013554 This domain is found at the N terminus of bacterial ribonucleoside-diphosphate reductases (ribonucleotide reductases, RNRs) which catalyse the formation of deoxyribonucleotides []. It occurs together with the RNR all-alpha domain (IPR013509 from INTERPRO) and the RNR barrel domain (IPR000788 from INTERPRO). ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A.
Probab=30.31 E-value=32 Score=18.08 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCH--HHHHHHHHHHhhCCCCchHHHHHHHH
Q 034447 12 YSSYIKFLGKNGNS--LKALEIYNSITDESDKVNVFICNLIL 51 (94)
Q Consensus 12 ~~~ll~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~t~~~li 51 (94)
.|+++..+-+.|.. +.=.+..+.-....+.|+...|+++.
T Consensus 4 LNn~~~~~~~~G~~~l~kD~eA~~~y~~~~V~pnt~~F~S~~ 45 (82)
T PF08343_consen 4 LNNELNIYDEDGKIQLEKDKEAVRAYFKEHVNPNTVKFNSLK 45 (82)
T ss_dssp HHHGGG---TTS---THHHHHHHHHHHHHTTGGGB---SSHH
T ss_pred HHHHHcCCCCCCCcCchhHHHHHHHHHHHhcccceeecCCHH
Confidence 45555555555542 33333344444445667776666654
No 390
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=30.27 E-value=89 Score=16.25 Aligned_cols=33 Identities=6% Similarity=0.132 Sum_probs=14.7
Q ss_pred cHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCC
Q 034447 8 SISSYSSYIKFLGKNGN---SLKALEIYNSITDESD 40 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~ 40 (94)
+..+=+-+++.+.+.+. .++|..+.+.+.+.|+
T Consensus 27 ~cF~GselVdWL~~~~~~~~r~eAv~lg~~Ll~~G~ 62 (81)
T cd04439 27 KCFLGNEFVSWLLEIGEISKPEEGVNLGQALLENGI 62 (81)
T ss_pred ceeEhHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 33333444444444432 2455555555554443
No 391
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=30.08 E-value=1.6e+02 Score=19.03 Aligned_cols=83 Identities=7% Similarity=-0.059 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLV-RNGKFESSLKLFDKIKQSGLTPDAVTYNTVY 86 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 86 (94)
|...+-+++...-..+.++....+.+++...|= ..+-.+|-.-+. .-+++....+-|+.+.+..-.....+|-.++
T Consensus 148 dl~~R~A~vp~~~EArGLD~~p~~~~k~~~~gD---~~sa~iL~~I~~DEi~HV~~G~rWf~~~c~~~~~~p~~~f~~lv 224 (253)
T PF04305_consen 148 DLLARMALVPRVLEARGLDVTPFIIEKFRSAGD---EESAAILEIILRDEIGHVAIGNRWFRYLCEQRGLDPWETFRELV 224 (253)
T ss_pred CHHHHHHHHHHHHHhhCCCCCHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHHHHHHHHH
Confidence 334444455545555555555555555555442 223222222222 2245555556777776543323456688888
Q ss_pred HHhhccc
Q 034447 87 QSDHITW 93 (94)
Q Consensus 87 ~~~~~~~ 93 (94)
..+..|+
T Consensus 225 ~~~~~~~ 231 (253)
T PF04305_consen 225 RQYFRGK 231 (253)
T ss_pred HHhCCCC
Confidence 7765554
No 392
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=30.05 E-value=2e+02 Score=20.35 Aligned_cols=44 Identities=25% Similarity=0.334 Sum_probs=18.2
Q ss_pred cCCHHHHHHHHHHHhh---CCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 034447 22 NGNSLKALEIYNSITD---ESDKVNVFICNLILSCLVRNGKFESSLK 65 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~---~~~~p~~~t~~~li~~~~~~g~~~~a~~ 65 (94)
.|.+..|.+++.+-.. .+++|+..-|.-......+.|+.++|+.
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eais 308 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAIS 308 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhh
Confidence 3444444444444331 1233334444444444444444444443
No 393
>PLN02789 farnesyltranstransferase
Probab=29.90 E-value=1.7e+02 Score=19.40 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 034447 26 LKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLT 76 (94)
Q Consensus 26 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 76 (94)
+++..+++++.+.. +-|..+|+-.--.+.+.|+++++++.++++.+.+..
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 56677776666432 237788888777788888899999999998887654
No 394
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=29.88 E-value=2.8e+02 Score=21.92 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 034447 21 KNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDK 69 (94)
Q Consensus 21 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 69 (94)
+.|.+++|..++.+.++ |..|=.-|-..|+|++|+++-+.
T Consensus 812 eLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~ 851 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAET 851 (1416)
T ss_pred HHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhh
Confidence 45666666666666654 22223334444555555555443
No 395
>PRK05414 urocanate hydratase; Provisional
Probab=29.61 E-value=21 Score=25.43 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHhhCCCCchHHHHH----HHHHHHHhcC-CHHHHHHH
Q 034447 23 GNSLKALEIYNSITDESDKVNVFICN----LILSCLVRNG-KFESSLKL 66 (94)
Q Consensus 23 g~~~~a~~~~~~m~~~~~~p~~~t~~----~li~~~~~~g-~~~~a~~~ 66 (94)
|.+-.+.++|+++.++|+.||++|=. ..+.+|+-.| .++++.++
T Consensus 239 g~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ee~~~l 287 (556)
T PRK05414 239 GLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLEEAAEL 287 (556)
T ss_pred EEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHHHHHHH
Confidence 44577889999999999999887632 3344787777 55665543
No 396
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=29.44 E-value=82 Score=15.58 Aligned_cols=44 Identities=11% Similarity=0.240 Sum_probs=23.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC
Q 034447 15 YIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNG 58 (94)
Q Consensus 15 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 58 (94)
+|..+.+.+.+-....+.+.+...|...+..+.-..+++.-+.|
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 34555555555556666666665555554455554444444444
No 397
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=29.02 E-value=1.6e+02 Score=18.89 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=17.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 034447 13 SSYIKFLGKNGNSLKALEIYNSITDE 38 (94)
Q Consensus 13 ~~ll~~~~~~g~~~~a~~~~~~m~~~ 38 (94)
|++|..+....-+.....+|.+|...
T Consensus 12 NsvLQ~L~~~~l~~~L~~lf~~l~~~ 37 (300)
T cd02663 12 NSVLQALYFENLLTCLKDLFESISEQ 37 (300)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHhC
Confidence 77888777644445556688888754
No 398
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=28.89 E-value=2.2e+02 Score=20.38 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHHhhCC------CC----------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 034447 22 NGNSLKALEIYNSITDES------DK----------VNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAV 80 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~~~------~~----------p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 80 (94)
.|++..+...+++....+ +. ++....-.++++.. .|+.++|+++++++...|..|...
T Consensus 220 ~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~-~~d~~~Al~~l~~L~~~g~~~~~~ 293 (507)
T PRK06645 220 EGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYII-HRETEKAINLINKLYGSSVNLEIF 293 (507)
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 478888888887764321 21 33333344455444 499999999999999999887644
No 399
>PRK05629 hypothetical protein; Validated
Probab=28.87 E-value=1.3e+02 Score=19.69 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=22.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHH
Q 034447 55 VRNGKFESSLKLFDKIKQSGLTPDAVT 81 (94)
Q Consensus 55 ~~~g~~~~a~~~~~~m~~~g~~p~~~~ 81 (94)
.-.|+..+|..+++++...|..|-...
T Consensus 204 v~~g~~~~Al~~l~~l~~~g~~pi~il 230 (318)
T PRK05629 204 ACAGQVSKAVASTRRALQLGVSPVALA 230 (318)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 456899999999999999999885543
No 400
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=28.61 E-value=2.1e+02 Score=20.05 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
-|..|+-.|.-.|+.+...++-+.-..+| -+|....++.-.|+.++..+++.+-
T Consensus 375 d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 375 DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 35667778888888888777777666553 4778888888889999998887653
No 401
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=28.50 E-value=2.1e+02 Score=20.00 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHHHhhC---CCC-----------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 22 NGNSLKALEIYNSITDE---SDK-----------VNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~~---~~~-----------p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
.|++..+...++..... .+. +....| .+++ ....+++++|+.+++++.+.|..|.
T Consensus 213 ~gdlr~a~~~Lekl~~~~~~~It~~~V~~l~~~~~~~~vf-~L~~-ai~~~d~~~al~~l~~L~~~g~~~~ 281 (451)
T PRK06305 213 QGSLRDAESLYDYVVGLFPKSLDPDSVAKALGLLSQDSLY-TLDE-AITTQNYAQALEPVTDAMNSGVAPA 281 (451)
T ss_pred CCCHHHHHHHHHHHHHhccCCcCHHHHHHHHCCCCHHHHH-HHHH-HHHcCCHHHHHHHHHHHHHcCcCHH
Confidence 37788888877765421 121 223333 3454 3456899999999999999888763
No 402
>cd08305 Pyrin Pyrin: a protein-protein interaction domain. The Pyrin domain (or PYD), also called DAPIN or PAAD, is a subfamily of the Death Domain (DD) superfamily and it functions in several signaling pathways. The Pyrin domain is found at the N-terminus of a variety of proteins and serves as a linker that recruits other domains into signaling complexes. Pyrin-containing proteins include NALPs, ASC (Apoptosis-associated speck-like protein containing a CARD), and the interferon-inducible p200 (IFI-200) family of proteins which includes the human IFI-16, myeloid cell nuclear differentiation antigen (MNDA) and absent in melanoma (AIM) 2. NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case
Probab=28.14 E-value=43 Score=17.00 Aligned_cols=26 Identities=8% Similarity=0.249 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 47 CNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 47 ~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
-+-|+..|....-++.++++|++|..
T Consensus 40 a~lL~~~y~~~~a~~~t~~i~~~m~~ 65 (73)
T cd08305 40 ADLMEQKFGAVSALDKLINIFEDMPL 65 (73)
T ss_pred HHHHHHHcChhHHHHHHHHHHHHcCh
Confidence 34455556666667777777777753
No 403
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=28.13 E-value=85 Score=21.70 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=23.4
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHH
Q 034447 19 LGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFES 62 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~ 62 (94)
|-+.|.+++|.+++..-.. +.| |.++|..-..+|.+...+..
T Consensus 107 yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~ 149 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQ 149 (536)
T ss_pred hhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHH
Confidence 4455777777777754432 224 55666555555555544443
No 404
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=27.96 E-value=2.5e+02 Score=20.62 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=37.8
Q ss_pred cCCHHHHHHHHHHHhhC--------------CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 034447 22 NGNSLKALEIYNSITDE--------------SDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAV 80 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~~--------------~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 80 (94)
.|++..+...+++.... |.......| .++.+ ...|+.++|+.+++++...|..|-..
T Consensus 224 ~Gdlr~al~~Ldkli~~g~g~It~e~V~~llg~~~~~~if-~L~~a-i~~gd~~~Al~~l~~l~~~G~~p~~i 294 (598)
T PRK09111 224 EGSVRDGLSLLDQAIAHGAGEVTAEAVRDMLGLADRARVI-DLFEA-LMRGDVAAALAEFRAQYDAGADPVVV 294 (598)
T ss_pred CCCHHHHHHHHHHHHhhcCCCcCHHHHHHHhCCCCHHHHH-HHHHH-HHcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 36777777777766433 233333334 44553 34589999999999999999887543
No 405
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.81 E-value=2.3e+02 Score=20.23 Aligned_cols=38 Identities=5% Similarity=-0.019 Sum_probs=28.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNV 44 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 44 (94)
.++....-.++.+... ++.+.+..++++|...|..|..
T Consensus 243 ~~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 243 TIEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred CCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 3455555566666665 8899999999999999988753
No 406
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=27.64 E-value=2.4e+02 Score=20.37 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=40.5
Q ss_pred HhcCCHHHHHHHHHHHhhCC---CCchHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 034447 20 GKNGNSLKALEIYNSITDES---DKVNVFI----------CNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTY 82 (94)
Q Consensus 20 ~~~g~~~~a~~~~~~m~~~~---~~p~~~t----------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 82 (94)
...|-+.++..+++.....| +.++.+. .-.++ -....++..+++..++++.+.|..|.....
T Consensus 209 ~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG~~~~~~~~~~~-~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~ 283 (515)
T COG2812 209 AAEGSLRDALSLLDQAIAFGEGEITLESVRDMLGLTDIEKLLSLL-EAILKGDAKEALRLINELIEEGKDPEAFLE 283 (515)
T ss_pred HcCCChhhHHHHHHHHHHccCCcccHHHHHHHhCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 34577899999999887654 2222111 11111 124568999999999999999988765543
No 407
>PRK02492 deoxyhypusine synthase-like protein; Provisional
Probab=27.62 E-value=84 Score=21.29 Aligned_cols=59 Identities=14% Similarity=0.280 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 034447 10 SSYSSYIKFLGKN----GNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 10 ~~~~~ll~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 75 (94)
.++..|++.+.+. +++.+|.+++++|.+. ++...|-++-.+...+| ...++..|.+.|.
T Consensus 24 ~~v~~Lv~~~~~~gF~A~~L~~A~~i~~~Ml~~---~~~~ifL~~tgamvsaG----lr~~i~~Li~~~~ 86 (347)
T PRK02492 24 FDAVPIIDAMGKMAFQSRDLARAADIYDMMLQD---KECAVILTLAGSLSSAG----CMQVYIDLVRNNM 86 (347)
T ss_pred CCHHHHHHHHHHhCccHHHHHHHHHHHHHHHhC---CCCeEEEEeccchHHHH----HHHHHHHHHHcCC
Confidence 3677777777764 4567777777777642 23333333333333333 2356666666553
No 408
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=27.60 E-value=81 Score=17.05 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.0
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 034447 19 LGKNGNSLKALEIYNSITD 37 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~~ 37 (94)
.++.|++++|.+.+++-.+
T Consensus 25 ~a~~g~fe~A~~~l~ea~~ 43 (97)
T cd00215 25 AAKEGDFAEAEELLEEAND 43 (97)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4678999999988887654
No 409
>PF15595 Imm31: Immunity protein 31
Probab=27.46 E-value=74 Score=17.54 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=13.7
Q ss_pred hhCCCCchHHHHHHHHHHHHhcCC
Q 034447 36 TDESDKVNVFICNLILSCLVRNGK 59 (94)
Q Consensus 36 ~~~~~~p~~~t~~~li~~~~~~g~ 59 (94)
.+.|+..|-..|.+++++|.+...
T Consensus 31 ee~g~egnGY~W~~l~~~~l~~~~ 54 (107)
T PF15595_consen 31 EEIGFEGNGYDWEALARVYLRENA 54 (107)
T ss_pred HhcCCCCCCccHHHHHHHHHHHhC
Confidence 334555566666666666655543
No 410
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=27.34 E-value=1.2e+02 Score=19.37 Aligned_cols=28 Identities=7% Similarity=0.308 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHcC
Q 034447 47 CNLILSCLVRNG--KFESSLKLFDKIKQSG 74 (94)
Q Consensus 47 ~~~li~~~~~~g--~~~~a~~~~~~m~~~g 74 (94)
...|.+.+.+.+ +.+++..+++++.+.|
T Consensus 231 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (267)
T cd06182 231 EDALVKIIAKAGGVDESDAEEYLKELEDEG 260 (267)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 334444444433 4445666777776665
No 411
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=27.26 E-value=2.5e+02 Score=20.39 Aligned_cols=63 Identities=13% Similarity=0.113 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHHhhCCC------CchHHHHHHHHHHH--HhcCCHHHHHHHHH--------HHHHcCCCccHHHHHH
Q 034447 22 NGNSLKALEIYNSITDESD------KVNVFICNLILSCL--VRNGKFESSLKLFD--------KIKQSGLTPDAVTYNT 84 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~~~~------~p~~~t~~~li~~~--~~~g~~~~a~~~~~--------~m~~~g~~p~~~~~~~ 84 (94)
.+++..+...+++|....- ......+...+.|. -..|+.+.|...|. ...+.+...+...+..
T Consensus 374 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 374 RGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred CcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 4778899999998875421 12234444455543 34589999999997 4455566656555544
No 412
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=27.22 E-value=1.7e+02 Score=18.67 Aligned_cols=67 Identities=12% Similarity=-0.021 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG-LTP 77 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p 77 (94)
+...-..++....+.|..+.-..+++..... .+...-..++.+.+...+.+...++++.....+ +.+
T Consensus 168 ~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~ 235 (324)
T PF11838_consen 168 PPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRS 235 (324)
T ss_dssp -HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-T
T ss_pred chHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCccccc
Confidence 4444555666666666655555555555543 456666777777777777777777777776654 443
No 413
>PF02758 PYRIN: PAAD/DAPIN/Pyrin domain; InterPro: IPR004020 Pyrin domain was identified as putative protein-protein interaction domain at the N-terminal region of several proteins thought to function in apoptotic and inflammatory signalling pathways. Using secondary structure prediction and potential-based fold recognition methods, the PYRIN domain is predicted to be a member of the six-helix bundle death domain-fold superfamily that includes death domains (DDs), death effector domains (DEDs), and caspase recruitment domains (CARDs). Members of the death domain-fold superfamily are well established mediators of protein-protein interactions found in many proteins involved in apoptosis and inflammation, indicating further that the PYRIN domains serve a similar function. Comparison of a circular dichroism spectrum of the PYRIN domain of CARD7/DEFCAP/NAC/NALP1 with spectra of several proteins known to adopt the death domain-fold provides experimental support for the structure prediction [] It is found in interferon-inducible proteins, pyrin and myeloid cell nuclear differentiation antigen.; PDB: 2DO9_A 2YU0_A 2KN6_A 1UCP_A 2L6A_A 2KM6_A 1PN5_A 2DBG_A 3QF2_B 2HM2_Q.
Probab=27.06 E-value=31 Score=17.84 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=14.6
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHH
Q 034447 42 VNVFICNLILSCLVRNGKFESSLK 65 (94)
Q Consensus 42 p~~~t~~~li~~~~~~g~~~~a~~ 65 (94)
|...++.+.++.+-+.+.-+-|.+
T Consensus 57 ~~~~A~~vt~~il~~m~~~dLae~ 80 (83)
T PF02758_consen 57 GEQRAWEVTLKILEKMNRNDLAEK 80 (83)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHcChHHHHHH
Confidence 455666666666666666554443
No 414
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=27.00 E-value=6.1 Score=20.87 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=6.8
Q ss_pred ccHHHHHHHHHHHHhcCC
Q 034447 7 TSISSYSSYIKFLGKNGN 24 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~ 24 (94)
.+..+|.++|.+|++.|.
T Consensus 22 k~~~vyRvFiNgYar~g~ 39 (88)
T PF11491_consen 22 KNEAVYRVFINGYARNGF 39 (88)
T ss_dssp TTTTB------TTSS--E
T ss_pred cccceeeeeecccccceE
Confidence 355678888888888874
No 415
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=26.97 E-value=2.1e+02 Score=19.45 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=45.9
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHH------------HHHhcCCHHHHHHHHHHHHHc
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILS------------CLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~------------~~~~~g~~~~a~~~~~~m~~~ 73 (94)
..|--.+..++.. .-|++..|+.+++.....|-+-+...-+-.+. -.+.++++....+..+++.+.
T Consensus 207 ~~d~~al~~I~~~--S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~~~~v~~~Rei~~s 284 (346)
T KOG0989|consen 207 DIDDDALKLIAKI--SDGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLDLLELALSADTPNTVKRVREIMRS 284 (346)
T ss_pred CCCHHHHHHHHHH--cCCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHHHHHHHHccChHHHHHHHHHHHHh
Confidence 3344444444332 34889999999888876544444222222222 236788999999999999899
Q ss_pred CCCccH
Q 034447 74 GLTPDA 79 (94)
Q Consensus 74 g~~p~~ 79 (94)
|+.|-.
T Consensus 285 g~~~~~ 290 (346)
T KOG0989|consen 285 GYSPLQ 290 (346)
T ss_pred ccCHHH
Confidence 887743
No 416
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.95 E-value=3.3e+02 Score=21.70 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=37.8
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 29 LEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 29 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
..+|+++.+..+.|.+.-+-.-|..+.+.+++++|.++-.+|...
T Consensus 982 ~~L~~~L~~~~LSp~~~~~L~~la~~i~~~~y~~a~~i~~~iatt 1026 (1049)
T KOG0307|consen 982 EILFDKLRDGTLSPPITDGLHQLAQSIKNRDYSEALQIHAQIATT 1026 (1049)
T ss_pred HHHHHHHhcCCcChHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Confidence 345667777778899999988899999999999999999999843
No 417
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=26.94 E-value=70 Score=22.93 Aligned_cols=34 Identities=24% Similarity=0.553 Sum_probs=18.4
Q ss_pred HHhcCCHHHHHHHHHH---HHHcCCCc-cHHHHHHHHH
Q 034447 54 LVRNGKFESSLKLFDK---IKQSGLTP-DAVTYNTVYQ 87 (94)
Q Consensus 54 ~~~~g~~~~a~~~~~~---m~~~g~~p-~~~~~~~ll~ 87 (94)
|+.+|+++..+++|.- |+++.+.| +..|-+++++
T Consensus 347 yad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~sslls 384 (615)
T KOG0508|consen 347 YADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLS 384 (615)
T ss_pred ecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHH
Confidence 5666666666666643 55555544 3444444443
No 418
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=26.48 E-value=2.5e+02 Score=20.16 Aligned_cols=19 Identities=21% Similarity=0.632 Sum_probs=13.0
Q ss_pred HHHHHHcCCCccHHHHHHH
Q 034447 67 FDKIKQSGLTPDAVTYNTV 85 (94)
Q Consensus 67 ~~~m~~~g~~p~~~~~~~l 85 (94)
|+-|.+.|+.|...-|.++
T Consensus 372 FEtLveaGy~PE~AYfE~l 390 (487)
T PRK05225 372 FETMVDSGIIEESAYYESL 390 (487)
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 6777777777766666554
No 419
>PRK05907 hypothetical protein; Provisional
Probab=26.39 E-value=2e+02 Score=19.04 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=20.9
Q ss_pred HhcCCHHHHHHHHHHHHHc-CCCccHH
Q 034447 55 VRNGKFESSLKLFDKIKQS-GLTPDAV 80 (94)
Q Consensus 55 ~~~g~~~~a~~~~~~m~~~-g~~p~~~ 80 (94)
.-.|+..+|+++++++... |..|-..
T Consensus 215 i~~~~~~~Al~il~~Ll~~~ge~p~~I 241 (311)
T PRK05907 215 LLRRDRVEGHSLLRSLLSDMGEDPLGI 241 (311)
T ss_pred HHccCHHHHHHHHHHHHHhcCCChHHH
Confidence 3468889999999999988 8877544
No 420
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=26.29 E-value=2.1e+02 Score=22.57 Aligned_cols=33 Identities=6% Similarity=0.181 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 42 VNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 42 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
|-...|.-||..+....++..|-+.+++|.++-
T Consensus 1328 r~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1328 RCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 456788999999999999999999999998764
No 421
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=26.17 E-value=57 Score=17.92 Aligned_cols=31 Identities=10% Similarity=0.176 Sum_probs=22.6
Q ss_pred CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 38 ESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 38 ~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+|+.||.. .++....+++.|++...+..++-
T Consensus 37 rGvsPd~w------kgf~~~EDpE~aik~i~D~s~~A 67 (110)
T COG4075 37 RGVSPDKW------KGFSKEEDPESAIKAIRDLSDKA 67 (110)
T ss_pred cCcChhHh------cCcccccCHHHHHHHHHHhhhce
Confidence 45557654 46777789999999988887654
No 422
>PHA01754 hypothetical protein
Probab=26.12 E-value=93 Score=15.40 Aligned_cols=17 Identities=12% Similarity=0.356 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHcCCCc
Q 034447 61 ESSLKLFDKIKQSGLTP 77 (94)
Q Consensus 61 ~~a~~~~~~m~~~g~~p 77 (94)
.++++++++|++..+.|
T Consensus 47 ~EViKvvkemrr~~vkp 63 (69)
T PHA01754 47 LEVVKVVKEMRRLQVKP 63 (69)
T ss_pred HHHHHHHHHHHHcccCc
Confidence 35567788888876665
No 423
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=26.09 E-value=1e+02 Score=19.78 Aligned_cols=38 Identities=3% Similarity=0.032 Sum_probs=29.5
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCch
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVN 43 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 43 (94)
.|...+++.|...+-+.+-.+-.-++|+++.+.|+.+.
T Consensus 37 lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~ 74 (256)
T KOG3120|consen 37 LPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIA 74 (256)
T ss_pred cccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHH
Confidence 46777788888887777777777889999988888653
No 424
>PRK10292 hypothetical protein; Provisional
Probab=26.04 E-value=1e+02 Score=15.54 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=24.8
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 32 YNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 32 ~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
.-+|...|.+|......-.|+.-..++..+......+.|
T Consensus 22 Vl~m~~lG~e~k~i~Ia~vlrTa~a~~r~~rs~~~~qaM 60 (69)
T PRK10292 22 VLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAM 60 (69)
T ss_pred HHHHHHcCCCcchhhHHHHHHHHHHhcccccCHHHHHHH
Confidence 345677888888888888786655555554444444444
No 425
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.94 E-value=1.8e+02 Score=18.32 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 43 NVFICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 43 ~~~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
-...---|..-|.+.|++++|.++|+.+
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344445566667777777777776665
No 426
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=25.88 E-value=85 Score=22.56 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=15.9
Q ss_pred CCchHHHHHHHHHHHHhc
Q 034447 40 DKVNVFICNLILSCLVRN 57 (94)
Q Consensus 40 ~~p~~~t~~~li~~~~~~ 57 (94)
+.|.+.||..+++.|++.
T Consensus 556 lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 556 LHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred hCHHhhhHHHHHHHhhhh
Confidence 349999999999999877
No 427
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=25.72 E-value=1.4e+02 Score=20.24 Aligned_cols=27 Identities=19% Similarity=0.099 Sum_probs=14.3
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCchHH
Q 034447 19 LGKNGNSLKALEIYNSITDESDKVNVF 45 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~~~~~~p~~~ 45 (94)
..+..+.++|...+.+....|+.-|..
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek 39 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEK 39 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhh
Confidence 344455555555555555555544443
No 428
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=25.72 E-value=92 Score=16.92 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=15.0
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 034447 19 LGKNGNSLKALEIYNSITD 37 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~~ 37 (94)
+++.|++++|.+.+++-.+
T Consensus 27 ~a~~gdfe~A~~~l~eA~~ 45 (99)
T TIGR00823 27 AAKAGDFAKARALVEQAGM 45 (99)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4678999999888887654
No 429
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=25.68 E-value=1.9e+02 Score=18.52 Aligned_cols=39 Identities=13% Similarity=0.028 Sum_probs=31.9
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 034447 29 LEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 29 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 75 (94)
..+++.+.-.|+.||. .+.++.+.+.-.++.+++.++|.
T Consensus 56 ~~i~~dL~wLGl~~d~--------~~~qS~r~~~y~~~~~~Li~~G~ 94 (240)
T cd09287 56 DMIPEDLEWLGVKWDE--------VVIASDRIELYYEYARKLIEMGG 94 (240)
T ss_pred HHHHHHHHHcCCCCCC--------ccchhccHHHHHHHHHHHHHcCC
Confidence 4578888889999984 36788889998899999988875
No 430
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=25.62 E-value=70 Score=19.93 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=26.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHHHHH
Q 034447 50 ILSCLVRNGKFESSLKLFDKIKQSG-LTPDAVTYNTVY 86 (94)
Q Consensus 50 li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll 86 (94)
.|+.+..+++|+.+-.+.+++.+.- +.-|.+.|+.+-
T Consensus 66 ~iHLlFSAnRwe~~~~i~e~l~kg~~~ivDRY~~SGvA 103 (208)
T KOG3327|consen 66 TIHLLFSANRWEHVSLIKEKLAKGTTLIVDRYSFSGVA 103 (208)
T ss_pred HHHHHhccchhhHHHHHHHHHhcCCeEEEecceecchh
Confidence 4667778888888888888886653 455666665543
No 431
>PRK05094 dsDNA-mimic protein; Reviewed
Probab=25.53 E-value=1.3e+02 Score=16.80 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHH
Q 034447 25 SLKALEIYNSITDESDKV-NVFICNLILSCLV 55 (94)
Q Consensus 25 ~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~ 55 (94)
.+.|-.+|-+|...++.| |+..||.-..-.+
T Consensus 13 id~AYDiFLE~A~dNL~paDi~lFnlqFeerG 44 (107)
T PRK05094 13 LEQAYDIFLELAADNLDPADILLFNLQFEERG 44 (107)
T ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHhcC
Confidence 466778888888777877 7777776555443
No 432
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.47 E-value=1.6e+02 Score=17.51 Aligned_cols=48 Identities=8% Similarity=0.212 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFE 61 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 61 (94)
++|..+......-.|.++++.+.+.+..++..|-=--|+.+.+.|-+.
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 444444455556677777777777665555555444456666666443
No 433
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.44 E-value=2e+02 Score=18.68 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCccHHHHHHHHHH
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS-----GLTPDAVTYNTVYQS 88 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~~ 88 (94)
..+..+...|++..|.+++.+.... . -...-|+++=. -...+++-....+++.+. -...|+..|..+++|
T Consensus 132 ~~l~~ll~~~dy~~Al~li~~~~~~-l-~~l~~~~c~~~---L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~A 206 (291)
T PF10475_consen 132 SRLQELLEEGDYPGALDLIEECQQL-L-EELKGYSCVRH---LSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEA 206 (291)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-H-HhcccchHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4455666677888888877777642 0 01111111100 011223333333332221 125788889999988
Q ss_pred hh
Q 034447 89 DH 90 (94)
Q Consensus 89 ~~ 90 (94)
|.
T Consensus 207 Y~ 208 (291)
T PF10475_consen 207 YQ 208 (291)
T ss_pred HH
Confidence 63
No 434
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=25.05 E-value=2.4e+02 Score=19.61 Aligned_cols=71 Identities=15% Similarity=0.078 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTY 82 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 82 (94)
...++.+...|.+.+++..|.+.=+.....+ ++|....=--=.++...|+++.|+..|+++.+. .|+-..-
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~ 327 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAA 327 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 3566777778888888888887766655432 245555555556777888899999999888764 3544433
No 435
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=24.99 E-value=1.4e+02 Score=19.55 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=21.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHH
Q 034447 55 VRNGKFESSLKLFDKIKQSGLTPDAV 80 (94)
Q Consensus 55 ~~~g~~~~a~~~~~~m~~~g~~p~~~ 80 (94)
.-.|+...|..+++++...|..|-..
T Consensus 222 i~~~~~~~a~~~l~~ll~~g~~p~~i 247 (343)
T PRK06585 222 ALAGDLAAFERALDRALAEGTAPVLI 247 (343)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 45688889999999999999877543
No 436
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=24.87 E-value=30 Score=23.16 Aligned_cols=26 Identities=8% Similarity=0.208 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHHh
Q 034447 11 SYSSYIKFLGKN----GNSLKALEIYNSIT 36 (94)
Q Consensus 11 ~~~~ll~~~~~~----g~~~~a~~~~~~m~ 36 (94)
++..|++.|.+. +++.+|.+++++|.
T Consensus 13 ~~~~lv~~~~~~gF~A~~l~~A~~i~~~Ml 42 (329)
T PRK00805 13 SISELLDAMADTGFQGRKLGESVRVWTEML 42 (329)
T ss_pred CHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 788999999874 57889999999997
No 437
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.79 E-value=63 Score=23.56 Aligned_cols=20 Identities=10% Similarity=-0.054 Sum_probs=15.9
Q ss_pred HHHHHHhhCCCCchHHHHHH
Q 034447 30 EIYNSITDESDKVNVFICNL 49 (94)
Q Consensus 30 ~~~~~m~~~~~~p~~~t~~~ 49 (94)
.+++.+...|++||.+||++
T Consensus 254 ~IleDl~~LgIkpd~~TyTS 273 (712)
T KOG1147|consen 254 VILEDLSLLGIKPDRVTYTS 273 (712)
T ss_pred HHHHHHHHhCcCcceeeech
Confidence 35677778899999999874
No 438
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=24.66 E-value=3.3e+02 Score=21.04 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=37.6
Q ss_pred cCCHHHHHHHHHHHhhCC---CC----------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 22 NGNSLKALEIYNSITDES---DK----------VNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~~~---~~----------p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
.|++.++..++++....+ +. +|......+++.+ ..++..+++.+++++...|+.+.
T Consensus 211 ~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL-~~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 211 QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL-AAGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCHH
Confidence 478888888876644221 11 3333455555544 44899999999999999888654
No 439
>PF11426 Tn7_TnsC_Int: Tn7 transposition regulator TnsC; InterPro: IPR021542 TnsC is a molecular switch that regulates transposition and interacts with TnsA which is a component of the transposase. The two proteins interact via the residues 504-555 on TnsC. The TnsA/TnsC interaction is very important in Tn7 transposition []. ; PDB: 1T0F_C.
Probab=24.51 E-value=93 Score=14.60 Aligned_cols=17 Identities=6% Similarity=0.169 Sum_probs=7.4
Q ss_pred HHHHHHhhCCCCchHHH
Q 034447 30 EIYNSITDESDKVNVFI 46 (94)
Q Consensus 30 ~~~~~m~~~~~~p~~~t 46 (94)
.+++.+...|+-.|...
T Consensus 26 ~~y~~Lk~~Glifdl~~ 42 (48)
T PF11426_consen 26 SVYEALKQNGLIFDLED 42 (48)
T ss_dssp -HHHHHHHTTSB--HHH
T ss_pred HHHHHHHHCCeeeeHHH
Confidence 45555555555554443
No 440
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=24.44 E-value=48 Score=15.22 Aligned_cols=17 Identities=41% Similarity=0.667 Sum_probs=10.6
Q ss_pred HHHHHHHHcCCCccHHH
Q 034447 65 KLFDKIKQSGLTPDAVT 81 (94)
Q Consensus 65 ~~~~~m~~~g~~p~~~~ 81 (94)
++.+++.+.|+.|.++|
T Consensus 10 eL~~~L~~~G~~~gPIt 26 (44)
T smart00540 10 ELRAELKQYGLPPGPIT 26 (44)
T ss_pred HHHHHHHHcCCCCCCcC
Confidence 45566667777665554
No 441
>PF15652 Tox-SHH: HNH/Endo VII superfamily toxin with a SHH signature
Probab=24.41 E-value=92 Score=17.12 Aligned_cols=19 Identities=11% Similarity=0.289 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHcCCCccH
Q 034447 61 ESSLKLFDKIKQSGLTPDA 79 (94)
Q Consensus 61 ~~a~~~~~~m~~~g~~p~~ 79 (94)
++.-.++++|.+.|+.++.
T Consensus 69 ~Ef~~~~~eM~dAGV~~~~ 87 (100)
T PF15652_consen 69 EEFNNSYREMFDAGVSKEC 87 (100)
T ss_pred HHHHHHHHHHHHcCCCHHH
Confidence 4555678999999987643
No 442
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=24.36 E-value=2e+02 Score=18.39 Aligned_cols=78 Identities=12% Similarity=0.035 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLK---ALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTV 85 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~---a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 85 (94)
..++..+..+|...+..+. |..+++.+... ..-....|---++.+.+.++.+++.+++.+|...-.. ....|..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHH
Confidence 3566677778877776554 44455555432 2112344444466666688999999999999876321 22334444
Q ss_pred HHH
Q 034447 86 YQS 88 (94)
Q Consensus 86 l~~ 88 (94)
++.
T Consensus 162 l~~ 164 (278)
T PF08631_consen 162 LHH 164 (278)
T ss_pred HHH
Confidence 443
No 443
>PRK02166 hypothetical protein; Reviewed
Probab=24.35 E-value=1.8e+02 Score=17.78 Aligned_cols=64 Identities=3% Similarity=-0.065 Sum_probs=43.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
|+-..++.++....-.-.+.++..++--+...|...+-..|-.++..+...+-.+++...+.++
T Consensus 6 ~~y~~l~~~l~~~~~~~spaElHG~L~Gll~gG~~~~~~~W~~~l~~~~~~~~~~~~~~~l~~l 69 (184)
T PRK02166 6 SPYEAFAALLSSSGHPVSPAELHGLLLGRSCAGAGFDADAWLADAAELLEGEPGDNVRAALIGL 69 (184)
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCCChHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 3434444444444444456888889999999999999999999888776656555555444443
No 444
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=24.32 E-value=1.3e+02 Score=16.12 Aligned_cols=28 Identities=7% Similarity=0.182 Sum_probs=20.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSI 35 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m 35 (94)
+..-|-.|-..|++.|+.+..+.+++.+
T Consensus 30 T~~GFl~L~~lfierGR~ETtW~vLR~F 57 (89)
T PF08356_consen 30 TLDGFLFLNKLFIERGRHETTWTVLRKF 57 (89)
T ss_pred chhhHHHHHHHHHHhCcchHHHHHHHHc
Confidence 3445666777788888888888777765
No 445
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=24.28 E-value=2e+02 Score=20.53 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=39.2
Q ss_pred HHHHHHHH--HHHhcCCHHHHHHHHHHHhhCCCCchHHH----HHHHHHHHHhcCCHHHHHHH
Q 034447 10 SSYSSYIK--FLGKNGNSLKALEIYNSITDESDKVNVFI----CNLILSCLVRNGKFESSLKL 66 (94)
Q Consensus 10 ~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~t----~~~li~~~~~~g~~~~a~~~ 66 (94)
..|...+. -+|+.|+......+|+.-.+.|. -|..| |+-|=++|.-.+++++|.++
T Consensus 16 SCleLalEGERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~y 77 (639)
T KOG1130|consen 16 SCLELALEGERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKY 77 (639)
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhh
Confidence 34444443 37899999999999999988775 35554 44445566777888888874
No 446
>cd08321 Pyrin_ASC-like Pyrin Death Domain found in ASC. Pyrin Death Domain found in ASC (Apoptosis-associated speck-like protein containing a CARD) and similar proteins. ASC is an adaptor molecule that functions in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. ASC contains two domains from the Death Domain (DD) superfamily, an N-terminal pyrin-like domain and a C-terminal Caspase activation and recruitment domain (CARD). Through these 2 domains, ASC serves as an adaptor for inflammasome integrity and oligomerizes to form supramolecular assemblies. Other members of this subfamily are associated with ATPase domains and their function remains unknown. In general, Pyrin is a subfamily of the DD superfamily and functions in several signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=24.14 E-value=76 Score=16.51 Aligned_cols=12 Identities=8% Similarity=0.133 Sum_probs=4.7
Q ss_pred CHHHHHHHHHHH
Q 034447 24 NSLKALEIYNSI 35 (94)
Q Consensus 24 ~~~~a~~~~~~m 35 (94)
-++-+..+|+.|
T Consensus 60 A~~vt~~il~~i 71 (82)
T cd08321 60 AVEVTVKILRKM 71 (82)
T ss_pred HHHHHHHHHHHh
Confidence 333333344333
No 447
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=24.03 E-value=3.2e+02 Score=20.63 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=23.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 034447 56 RNGKFESSLKLFDKIKQSGLTPDAVTYNTVY 86 (94)
Q Consensus 56 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 86 (94)
+.++++.|+..+.+|.+.|..|....--.++
T Consensus 270 rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~ 300 (725)
T PRK13341 270 RGSDPDAALYWLARMVEAGEDPRFIFRRMLI 300 (725)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4579999999999999999888655443333
No 448
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=23.98 E-value=90 Score=14.27 Aligned_cols=18 Identities=17% Similarity=0.521 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHcCCCcc
Q 034447 61 ESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 61 ~~a~~~~~~m~~~g~~p~ 78 (94)
+...++.+-+.+.|+.||
T Consensus 29 ~tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 29 ETRERILEAAEELGYRPN 46 (46)
T ss_dssp HHHHHHHHHHHHHTB-SS
T ss_pred HHHHHHHHHHHHHCCCCC
Confidence 344456666666677665
No 449
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.84 E-value=2.7e+02 Score=19.70 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDES--DKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
..+.-+-+.|..+|+++.|.+.+...+... -+--+..|-.+|..-...|+|.++.....+-.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 456677889999999999999998855432 2345667777888888889998888777665543
No 450
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=23.69 E-value=2e+02 Score=18.13 Aligned_cols=52 Identities=13% Similarity=0.237 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcC
Q 034447 23 GNSLKALEIYNSITDESDK---VNVFICNLILSCLV--RNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 23 g~~~~a~~~~~~m~~~~~~---p~~~t~~~li~~~~--~~g~~~~a~~~~~~m~~~g 74 (94)
++.+++.++++...+..-. .|.+.+|+-+--+. +...++++.+..++..++|
T Consensus 193 ~~~~e~~~~~~~~L~G~~~~~~~d~v~~nAa~~L~~~g~~~s~~eg~~~a~e~i~sG 249 (252)
T PF00591_consen 193 GDPEENARILRAVLAGEEDPAHRDAVLLNAAAALYVAGKASSLEEGVEKAREAIDSG 249 (252)
T ss_dssp SSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 5667788888777433221 37777777665554 4578999999999888776
No 451
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=23.39 E-value=1.7e+02 Score=17.23 Aligned_cols=36 Identities=8% Similarity=0.027 Sum_probs=16.7
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 39 SDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 39 ~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
|+.++......+...+....-+.++..+++++.+.|
T Consensus 73 g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g 108 (198)
T TIGR01428 73 GLEDDESAADRLAEAYLRLPPHPDVPAGLRALKERG 108 (198)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCC
Confidence 444433333444444444444455555555555544
No 452
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.32 E-value=3.3e+02 Score=20.58 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=38.3
Q ss_pred cCCHHHHHHHHHHHhhCC---C----------CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 034447 22 NGNSLKALEIYNSITDES---D----------KVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDA 79 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~~~---~----------~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 79 (94)
.|++..|..++++....| + ..+....-.++++..+ ++...++++++++...|..++.
T Consensus 210 ~GdLRdALnLLDQaIayg~g~IT~edV~~lLG~~d~e~IfdLldAI~k-~d~~~al~~L~el~~~g~d~~~ 279 (702)
T PRK14960 210 QGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQ-NQREKVSQLLLQFRYQALDVSL 279 (702)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhccCCHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCHHH
Confidence 478888888877655432 1 1233344555665554 7889999999999998887653
No 453
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=23.31 E-value=1.1e+02 Score=16.83 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=14.8
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 034447 19 LGKNGNSLKALEIYNSITD 37 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~~ 37 (94)
+++.|++++|.+.+++-.+
T Consensus 30 ~ak~gdf~~A~~~l~eA~~ 48 (104)
T PRK09591 30 AMREGNFDLAEQKLNQSNE 48 (104)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5677899999888877654
No 454
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=23.29 E-value=1.1e+02 Score=15.11 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 034447 26 LKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKL 66 (94)
Q Consensus 26 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 66 (94)
+.+.+++...... .....|...|+.++.+.|..+-|..+
T Consensus 41 ~~~~~~L~~W~~~--~~~~at~~~L~~aL~~~~~~d~~~~i 79 (83)
T PF00531_consen 41 EQTYEMLQRWRQR--EGPNATVDQLIQALRDIGRNDLAEKI 79 (83)
T ss_dssp HHHHHHHHHHHHH--HGSTSSHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCCcHHHHHHHHHHCCcHHHHHHH
Confidence 3444444444433 23344555666666666665555443
No 455
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=23.20 E-value=80 Score=13.36 Aligned_cols=32 Identities=9% Similarity=0.102 Sum_probs=14.9
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 034447 32 YNSITDESDKVNVFICNLILSCLVRNGKFESSLKLF 67 (94)
Q Consensus 32 ~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~ 67 (94)
++.+.+.|+.++ ..-.+| ....|+++.|.+.+
T Consensus 6 v~~L~~mGf~~~-~~~~AL---~~~~~nve~A~~~L 37 (37)
T PF00627_consen 6 VQQLMEMGFSRE-QAREAL---RACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHTS-HH-HHHHHH---HHTTTSHHHHHHHH
T ss_pred HHHHHHcCCCHH-HHHHHH---HHcCCCHHHHHHhC
Confidence 344444476555 222222 23345777777653
No 456
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=23.03 E-value=95 Score=14.18 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=17.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 034447 51 LSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 51 i~~~~~~g~~~~a~~~~~~m~~ 72 (94)
|......|+++.|++..+....
T Consensus 8 i~~~i~~g~~~~a~~~~~~~~~ 29 (58)
T smart00668 8 IRELILKGDWDEALEWLSSLKP 29 (58)
T ss_pred HHHHHHcCCHHHHHHHHHHcCH
Confidence 4556678999999998887754
No 457
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=22.98 E-value=2.9e+02 Score=19.80 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESD 40 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 40 (94)
...++.++++...+|-.+...-+.+.+....+
T Consensus 378 ~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~ 409 (618)
T PF01347_consen 378 EQARKIFLDALPQAGTNPAVKFIKDLIKSKKL 409 (618)
T ss_dssp HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC
Confidence 34555666666666655544444444444333
No 458
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=22.81 E-value=57 Score=21.02 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHcCCCc
Q 034447 26 LKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESS-LKLFDKIKQSGLTP 77 (94)
Q Consensus 26 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a-~~~~~~m~~~g~~p 77 (94)
+-+..+.+.|.+.|++|-...- +..++..|+.... ...+.++.++|+.|
T Consensus 81 ~L~~~V~~~l~~~Gv~av~~~P---~s~~~~~gr~~~~~l~~i~~~l~~gfvP 130 (252)
T COG1608 81 ELNSIVVDALLDAGVRAVSVVP---ISFSTFNGRILYTYLEAIKDALEKGFVP 130 (252)
T ss_pred HHHHHHHHHHHhcCCccccccC---cceeecCCceeechHHHHHHHHHcCCEe
Confidence 3445566777777776632111 1111566777777 88888888888877
No 459
>PLN00214 putative protein; Provisional
Probab=22.78 E-value=1.6e+02 Score=16.63 Aligned_cols=7 Identities=0% Similarity=0.102 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 034447 65 KLFDKIK 71 (94)
Q Consensus 65 ~~~~~m~ 71 (94)
+++..+.
T Consensus 50 EI~a~i~ 56 (115)
T PLN00214 50 DIIAVVF 56 (115)
T ss_pred HHHHHHH
Confidence 3333333
No 460
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=22.40 E-value=86 Score=16.65 Aligned_cols=22 Identities=9% Similarity=0.280 Sum_probs=9.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 034447 48 NLILSCLVRNGKFESSLKLFDK 69 (94)
Q Consensus 48 ~~li~~~~~~g~~~~a~~~~~~ 69 (94)
..++.++....+.+++..+|++
T Consensus 4 ~~l~~~i~~l~~~ee~~~f~~d 25 (87)
T PF01371_consen 4 DELFEAILSLKDEEECYDFFED 25 (87)
T ss_dssp HHHHHHHHCHHCHHCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444444444444444433
No 461
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=22.38 E-value=3.2e+02 Score=20.07 Aligned_cols=64 Identities=13% Similarity=0.139 Sum_probs=51.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCL--VRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
..++++.+.|+.+.|..++.++.. .+.+.-...-.++.+- ....++..|.+.+.+.......++
T Consensus 68 lAa~al~~e~k~~qA~~Ll~ql~~-~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~~ 133 (604)
T COG3107 68 LAARALVEEGKTAQAQALLNQLPQ-ELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQN 133 (604)
T ss_pred HHHHHHHHcCChHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcCHH
Confidence 346778899999999999999987 7888888888888874 345788899999988776666555
No 462
>COG4397 Mu-like prophage major head subunit gpT [General function prediction only]
Probab=22.26 E-value=1.2e+02 Score=19.37 Aligned_cols=58 Identities=9% Similarity=0.214 Sum_probs=32.4
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHH-cCCCccHHHHHHHHHH
Q 034447 29 LEIYNSITDESDKVNVFICNLILSCLVRNGKFES-----SLKLFDKIKQ-SGLTPDAVTYNTVYQS 88 (94)
Q Consensus 29 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~-----a~~~~~~m~~-~g~~p~~~~~~~ll~~ 88 (94)
-++++.|+..|...--.+|..-+. ....++++ -.-++++|.+ .+++||...|..|-++
T Consensus 62 dRv~~~mkahGYaIvNK~fe~~V~--i~R~DiEDDNvGiYsPl~~EmGRAaav~pDELVFaaL~~g 125 (308)
T COG4397 62 DRVIEKMKAHGYAIVNKTFEGTVA--ISRDDIEDDNVGIYSPLFQEMGRAAAVQPDELVFAALRDG 125 (308)
T ss_pred HHHHHHHHhccceeeeccccccee--eccccccccccccchHHHHHHhHhhccCchHHHHHHHHhh
Confidence 456777777665433233322111 11222222 1236778865 5899999999988766
No 463
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=22.14 E-value=96 Score=15.90 Aligned_cols=14 Identities=21% Similarity=0.674 Sum_probs=8.7
Q ss_pred HHHHHHHHHHcCCC
Q 034447 63 SLKLFDKIKQSGLT 76 (94)
Q Consensus 63 a~~~~~~m~~~g~~ 76 (94)
+.+-|++|.+.|+-
T Consensus 56 ~~k~fe~M~~~G~f 69 (73)
T PF02937_consen 56 PMKDFEEMRKAGIF 69 (73)
T ss_dssp HHHHHHHHHHTT--
T ss_pred hHHHHHHHHhcCCc
Confidence 44567888888763
No 464
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.11 E-value=2.5e+02 Score=18.66 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHhhC--------------CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 23 GNSLKALEIYNSITDE--------------SDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 23 g~~~~a~~~~~~m~~~--------------~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
|++..+...++.+... +..++...|. ++++. ..++..++..+++++...|..|.
T Consensus 201 gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~-l~~ai-~~~~~~~a~~~~~~l~~~~~~~~ 268 (367)
T PRK14970 201 GALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYIN-VTDLI-LENKIPELLLAFNEILRKGFDGH 268 (367)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHH-HHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 6778777777766421 1122233333 44544 45899999999999998887773
No 465
>PRK12928 lipoyl synthase; Provisional
Probab=22.09 E-value=67 Score=20.94 Aligned_cols=56 Identities=7% Similarity=0.163 Sum_probs=29.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 15 YIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 15 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
++..-.+...+++..++++...+.| |+..+-+.+|-|+ -...++..+.++.+.+.+
T Consensus 177 vl~~m~r~~t~e~~le~l~~ak~~g--p~i~~~s~iIvG~--GET~ed~~etl~~Lrel~ 232 (290)
T PRK12928 177 LQKAVRRGADYQRSLDLLARAKELA--PDIPTKSGLMLGL--GETEDEVIETLRDLRAVG 232 (290)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhC--CCceecccEEEeC--CCCHHHHHHHHHHHHhcC
Confidence 3333334444555555555555543 5555555666655 334455556666655544
No 466
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=21.85 E-value=1.2e+02 Score=14.82 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=12.7
Q ss_pred HHhcCCHHHHHHHHHHH
Q 034447 54 LVRNGKFESSLKLFDKI 70 (94)
Q Consensus 54 ~~~~g~~~~a~~~~~~m 70 (94)
+=+.|++++|+..|.+-
T Consensus 15 ~D~~g~~~~A~~~Y~~a 31 (69)
T PF04212_consen 15 ADEAGNYEEALELYKEA 31 (69)
T ss_dssp HHHTTSHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 34578999999887664
No 467
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=21.81 E-value=2.7e+02 Score=19.00 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=47.2
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh
Q 034447 19 LGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQSD 89 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 89 (94)
+.|.+++-...++++.+.+. |...-.+++++.. .|+.+..-.+++.+.++|+.+++..-+.+.+.+
T Consensus 286 ~lK~r~~y~~~kfvd~L~r~----d~e~~~~L~~ai~-~~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l 351 (354)
T TIGR01914 286 YLKARDFYSWPKFVDFLARR----DPEISLQLTDAIL-NGDEEAFYTALRELKKSGVRYDPEQVDALAEIL 351 (354)
T ss_pred HHhhhhhcchHHHHHHHhcc----ChHHHHHHHHHHH-cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 44555667778888888765 3344666666554 466677778888899999999998888777664
No 468
>KOG3550 consensus Receptor targeting protein Lin-7 [Extracellular structures]
Probab=21.74 E-value=1.2e+02 Score=18.22 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHHHHcCCCcc
Q 034447 58 GKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 58 g~~~~a~~~~~~m~~~g~~p~ 78 (94)
.++..++++++++.++|-.|.
T Consensus 12 rdv~r~ielleklq~sgevp~ 32 (207)
T KOG3550|consen 12 RDVQRAIELLEKLQRSGEVPP 32 (207)
T ss_pred HHHHHHHHHHHHHHHcCCCCH
Confidence 456666677777776665554
No 469
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=21.71 E-value=1.2e+02 Score=17.08 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=14.6
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 034447 19 LGKNGNSLKALEIYNSITD 37 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~~ 37 (94)
.++.|++++|.+.+++-.+
T Consensus 41 ~Ak~gdfe~A~~~l~eA~e 59 (115)
T PRK10454 41 QAKQGDFAAAKAMMDQSRM 59 (115)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 4577889999888877654
No 470
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=21.69 E-value=1.8e+02 Score=16.89 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=28.8
Q ss_pred CCHHHHHH-HHHHHh-hCCCC---------chHHHHHHHHHHHHhcCCHHHHHHHH
Q 034447 23 GNSLKALE-IYNSIT-DESDK---------VNVFICNLILSCLVRNGKFESSLKLF 67 (94)
Q Consensus 23 g~~~~a~~-~~~~m~-~~~~~---------p~~~t~~~li~~~~~~g~~~~a~~~~ 67 (94)
|.+++|.. +-+.|. .+.++ .|...+..|-.++...|++++++.--
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA 78 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSA 78 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 56655544 445554 23333 57888899999999999998877533
No 471
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=21.59 E-value=3.2e+02 Score=19.78 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 034447 13 SSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 13 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 75 (94)
..||.-|--.|+..+|..+++++-- .+-...+++.+++-+.-+.++-...+++++..-++|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 4677888888999999999887632 1223678899999999999988777777777666654
No 472
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=21.46 E-value=2.1e+02 Score=18.21 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHHcCCCc
Q 034447 58 GKFESSLKLFDKIKQSGLTP 77 (94)
Q Consensus 58 g~~~~a~~~~~~m~~~g~~p 77 (94)
|+-+.+.+..+.-.+.|+.|
T Consensus 29 g~~~~~~e~~~~al~~Gidp 48 (227)
T COG5012 29 GEEEMAVELTQKALEAGIDP 48 (227)
T ss_pred chHHHHHHHHHHHHHcCCCH
Confidence 45555555555555555555
No 473
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=21.44 E-value=2.3e+02 Score=18.06 Aligned_cols=71 Identities=10% Similarity=0.139 Sum_probs=42.2
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc---hHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV---NVFICN--LILSCLVRNGKFESSLKLFDKIKQSGLTPDA 79 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~t~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 79 (94)
+...-+|.|+--|--.-.+.+|...| ..+.|+.| |..+.+ .-|....+.|+.++|+....+....-+..|.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~F--a~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKF--AKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHh--ccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 34444555554444444455555555 34455555 333333 3566678999999999988887655444443
No 474
>cd01786 STE50_RA Ubiquitin-like domain of STE50_RA. STE50_RA The fungal adaptor protein STE50 is an essential component of three MAPK-mediated signalling pathways, which control the mating response, invasive/filamentous growth and osmotolerance (HOG pathway), respectively. STE50 functions in cell signalling between the activated G protein and STE11. The domain architecture of STE50 includes an amino-terminal SAM (sterile alpha motif) domain in addition to the carboxy-terminal ubiquitin-like RA (RAS-associated) domain. While the SAM domain interacts with STE11, the RA domain interacts with CDC42 and RAS. Modulation of signal transduction by STE50 specifically affects the pheromone-response pathway in yeast.
Probab=21.31 E-value=92 Score=16.92 Aligned_cols=19 Identities=37% Similarity=0.648 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHcCCCcc
Q 034447 60 FESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~ 78 (94)
-++-..+|+++.+.|..|-
T Consensus 74 dEKPl~lFk~L~~~g~~P~ 92 (98)
T cd01786 74 DEKPVIIFKNLKQQGLHPA 92 (98)
T ss_pred cccHHHHHHHHHHcCCCCe
Confidence 3556679999999998874
No 475
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=21.27 E-value=55 Score=16.64 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=9.7
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 034447 20 GKNGNSLKALEIYNSITD 37 (94)
Q Consensus 20 ~~~g~~~~a~~~~~~m~~ 37 (94)
++..+.++|.++..+|++
T Consensus 38 ~~~~~~~eA~eiVrklQ~ 55 (68)
T PF09082_consen 38 ARAENAEEASEIVRKLQE 55 (68)
T ss_dssp S--SSHHHHHHHHHHHSS
T ss_pred EecCCHHHHHHHHHHHHH
Confidence 344556666666666654
No 476
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=21.19 E-value=60 Score=22.51 Aligned_cols=40 Identities=10% Similarity=-0.056 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 034447 22 NGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFE 61 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 61 (94)
.|..+++.++++.++-.-..|+..++.+|+..++..-+++
T Consensus 330 ~~~~~~a~kf~~~LK~~~~a~SlG~~eSL~~~p~~mth~~ 369 (409)
T KOG0053|consen 330 FGNEEHAKKFYDALKLFTKAPSLGGNESLAEPPAIMTHAS 369 (409)
T ss_pred cCCHHHHHHHHHhhhhhhcccCcCccchhhcchhhhccCC
Confidence 4678899999999887667789999999999888765444
No 477
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=21.19 E-value=1.3e+02 Score=16.73 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=15.5
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 034447 18 FLGKNGNSLKALEIYNSITD 37 (94)
Q Consensus 18 ~~~~~g~~~~a~~~~~~m~~ 37 (94)
-+++.|++++|...+.+-.+
T Consensus 28 ~~Ak~g~f~~A~~~i~eA~~ 47 (105)
T COG1447 28 KAAKEGDFEEAEELIQEAND 47 (105)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 36788999999988877653
No 478
>PRK10162 acetyl esterase; Provisional
Probab=21.19 E-value=32 Score=22.40 Aligned_cols=46 Identities=4% Similarity=0.070 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 034447 26 LKALEIYNSITDESDKVNVFICNLILSCLVRNG-KFESSLKLFDKIK 71 (94)
Q Consensus 26 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~ 71 (94)
+++..+.+.+++.|++.....|.-+..++.... ..+++.+.++++.
T Consensus 263 de~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~ 309 (318)
T PRK10162 263 DDSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGA 309 (318)
T ss_pred ChHHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHH
Confidence 578888888888888877778888888877653 4567777666654
No 479
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification]
Probab=21.18 E-value=1e+02 Score=20.01 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHH
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNL 49 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ 49 (94)
.-.+.+-..-.+.+-..++..+.+.|++||...|+.
T Consensus 138 dq~~YF~~~L~l~~k~~l~~~L~~~gI~p~~~~y~l 173 (263)
T KOG1642|consen 138 DQHKYFETTLKLKQKLDLLSILKKAGIKPDDNFYSL 173 (263)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCceeH
Confidence 333344444444455555566667777777666654
No 480
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=21.17 E-value=3e+02 Score=20.26 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=38.4
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 034447 30 EIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNT 84 (94)
Q Consensus 30 ~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 84 (94)
++++.+-. -+...||+.|..=.-..++...+.++-+|++.-=.|+.+.|+.
T Consensus 475 D~YeSLY~----dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~ 525 (791)
T KOG1002|consen 475 DLYESLYK----DSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSA 525 (791)
T ss_pred HHHHHHHH----hhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehh
Confidence 34544443 3556788877777777799999999999998877899888863
No 481
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.15 E-value=1.8e+02 Score=16.64 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHcC
Q 034447 60 FESSLKLFDKIKQSG 74 (94)
Q Consensus 60 ~~~a~~~~~~m~~~g 74 (94)
.-.|.++++++.+.+
T Consensus 33 h~sa~eI~~~l~~~~ 47 (148)
T PRK09462 33 HVSAEDLYKRLIDMG 47 (148)
T ss_pred CCCHHHHHHHHHhhC
Confidence 334555555555444
No 482
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.11 E-value=3.6e+02 Score=20.10 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=48.4
Q ss_pred cHHHHHHH---HHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSY---IKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLV-RNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~-~~g~~~~a~~~~~~m~~~ 73 (94)
|...|-++ |....+.|++..|.+.=+.+.+..-.-|....-.+|+-|+ ++.+++-.+++++.....
T Consensus 338 NR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 338 NRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred hHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 44445544 4556788999999998888776654446777788888886 667888888888877554
No 483
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=21.02 E-value=2.1e+02 Score=20.36 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=27.9
Q ss_pred hCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 37 DESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 37 ~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+.|++||+.....|+-..+..-++...++++++...-
T Consensus 16 ~tg~~~dv~~h~~m~~~~~~hir~~~~l~~~e~~i~y 52 (533)
T KOG1817|consen 16 KTGIRSDVCQHAMMLPVLTHHIRYHQSLDHLEELIGY 52 (533)
T ss_pred HhCcchHHHHHHHHHHHHhhhhhHHHhHHHHHHHhCe
Confidence 4577788888888888888777777777777776543
No 484
>PF11013 DUF2851: Protein of unknown function (DUF2851); InterPro: IPR021272 This bacterial family of proteins has no known function.
Probab=20.99 E-value=2.9e+02 Score=19.03 Aligned_cols=61 Identities=13% Similarity=0.013 Sum_probs=44.6
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKL 66 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 66 (94)
..+..+....+......+.-+++..+...+...+-..+.+.|-.|.++++-.-+-+...++
T Consensus 138 ~v~~~~~~~wl~~l~~eRLe~K~~~i~~~l~~~~~dwe~~~y~~Lar~fG~~~N~~~F~~l 198 (377)
T PF11013_consen 138 EVPPFILHSWLERLLFERLERKAQRIEQLLEETNNDWEEVLYQLLARNFGFKVNGEAFEQL 198 (377)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 3456667777777777777788888888888777778888888888888766655554443
No 485
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=20.91 E-value=1.2e+02 Score=20.26 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHHh
Q 034447 11 SYSSYIKFLGKN-----GNSLKALEIYNSIT 36 (94)
Q Consensus 11 ~~~~ll~~~~~~-----g~~~~a~~~~~~m~ 36 (94)
++..|++.|.+. +++.+|.+++++|.
T Consensus 21 ~~~~lv~~~~~~~gF~a~~l~~A~~i~~~ml 51 (312)
T PRK01221 21 SISDLIEVYRKIGGFMAGHIVRASEILKEMI 51 (312)
T ss_pred CHHHHHHHhhccCCcchHHHHHHHHHHHHHH
Confidence 555666666554 34556666666664
No 486
>KOG4496 consensus Predicted coiled-coil protein [Function unknown]
Probab=20.79 E-value=93 Score=18.51 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=11.2
Q ss_pred HHHHHHhhCCCCchH
Q 034447 30 EIYNSITDESDKVNV 44 (94)
Q Consensus 30 ~~~~~m~~~~~~p~~ 44 (94)
.+.++|...|+.||+
T Consensus 150 ai~nKMiSEGlDPdi 164 (194)
T KOG4496|consen 150 AIINKMISEGLDPDI 164 (194)
T ss_pred HHHHHHHHccCCHHH
Confidence 467788888887765
No 487
>KOG2536 consensus MAM33, mitochondrial matrix glycoprotein [Energy production and conversion]
Probab=20.77 E-value=2.6e+02 Score=18.30 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=31.6
Q ss_pred HHHH-HHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 29 LEIY-NSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 29 ~~~~-~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.+.| .-+..+|+.++...| |.+|....+-.+-++.++.+++
T Consensus 218 qd~fh~fLEeRGI~esl~~F---L~~ym~~Kd~rEYl~WlksvK~ 259 (263)
T KOG2536|consen 218 QDSFHRFLEERGIKESLASF---LHAYMKNKDSREYLRWLKSVKS 259 (263)
T ss_pred HHHHHHHHHHcCCCHHHHHH---HHHHHhhhhHHHHHHHHHHHHH
Confidence 3344 345689999988766 7899999999998888888764
No 488
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=20.77 E-value=2.9e+02 Score=21.51 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHhhC
Q 034447 11 SYSSYIKFLGKNG--NSLKALEIYNSITDE 38 (94)
Q Consensus 11 ~~~~ll~~~~~~g--~~~~a~~~~~~m~~~ 38 (94)
-...+|-+|++.. ++++|..++.++++.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3456677777776 788888887777754
No 489
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=20.74 E-value=1.4e+02 Score=15.39 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 034447 26 LKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLT 76 (94)
Q Consensus 26 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 76 (94)
.....+++.+...|+ .+..-|..+-. +.-..+.|.++++-....|-.
T Consensus 15 ~~v~~ilD~L~~~~V-it~e~~~~I~a---~~T~~~kar~Lld~l~~kG~~ 61 (82)
T cd08330 15 TNVDPILDKLHGKKV-ITQEQYSEVRA---EKTNQEKMRKLFSFVRSWGAS 61 (82)
T ss_pred hhHHHHHHHHHHCCC-CCHHHHHHHHc---CCCcHHHHHHHHHHHHccCHH
Confidence 355678888888775 45555555333 456788888888888877643
No 490
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=20.64 E-value=4e+02 Score=20.51 Aligned_cols=55 Identities=13% Similarity=0.257 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHhhC----CCCc----------hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 23 GNSLKALEIYNSITDE----SDKV----------NVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 23 g~~~~a~~~~~~m~~~----~~~p----------~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
|++..+...++++... ++.. +......++++.. .++...++.+++++.+.|..|.
T Consensus 213 GdlR~Al~eLEKLia~~~~~~IT~e~V~allg~~~~~~I~~lidAL~-~~D~a~al~~l~~Li~~G~dp~ 281 (824)
T PRK07764 213 GSVRDSLSVLDQLLAGAGPEGVTYERAVALLGVTDSALIDEAVDALA-AGDGAALFGTVDRVIEAGHDPR 281 (824)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 6788888888776531 1211 1222334455554 5788899999999998887654
No 491
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=20.52 E-value=38 Score=24.21 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHhhCCCCchHHHHH----HHHHHHHhcC-CHHHHHHH
Q 034447 24 NSLKALEIYNSITDESDKVNVFICN----LILSCLVRNG-KFESSLKL 66 (94)
Q Consensus 24 ~~~~a~~~~~~m~~~~~~p~~~t~~----~li~~~~~~g-~~~~a~~~ 66 (94)
.+-.+.++|+++.++|+.||+.|=. ..+.+|.-.| .++++.++
T Consensus 230 ~~GN~ad~~~~l~~~~i~pDl~tDQTS~Hdp~~GY~P~g~t~eea~~l 277 (546)
T PF01175_consen 230 LLGNAADLWEELVERGIIPDLVTDQTSAHDPLNGYYPAGLTFEEANEL 277 (546)
T ss_dssp EES-HHHHHHHHHHTT---SEE---SSTT-TTTS---TT--HHHHHHH
T ss_pred EeccHHHHHHHHHHcCCCCCcccCCCccccccccCCCCCCCHHHHHHH
Confidence 3467889999999999999876632 3344787777 56666554
No 492
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=20.33 E-value=2.4e+02 Score=17.68 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=46.6
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCchHHHHHHHHHHHHhcCCHHHHH
Q 034447 5 GKTSISSYSSYIKFLGKNGNSLKALEIYNSITD---ESDKVNVFICNLILSCLVRNGKFESSL 64 (94)
Q Consensus 5 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~t~~~li~~~~~~g~~~~a~ 64 (94)
+..+....-..|..|.-..+.+++..++....+ .+-.+|...+..|...|-+.++.+.|.
T Consensus 136 ~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 136 PELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 344555555667777778999999998887753 233689999999999999999998875
No 493
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.30 E-value=2.3e+02 Score=17.66 Aligned_cols=70 Identities=16% Similarity=0.250 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAV 80 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 80 (94)
-.|.+-|+ +++.+..++|..-|..+.+.|..- .+..---+-....+.|+...|...|++..+..-.|...
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~ 130 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIG 130 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchh
Confidence 34555554 356677899999999999876531 11111112223568899999999999998776555443
No 494
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=20.17 E-value=99 Score=13.27 Aligned_cols=19 Identities=16% Similarity=0.585 Sum_probs=13.2
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 034447 50 ILSCLVRNGKFESSLKLFD 68 (94)
Q Consensus 50 li~~~~~~g~~~~a~~~~~ 68 (94)
+--.+-..|+.++|+++|.
T Consensus 7 ~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHH
Confidence 3445678899999999844
No 495
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=20.14 E-value=4.4e+02 Score=20.70 Aligned_cols=32 Identities=3% Similarity=0.127 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 43 NVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 43 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+...+-.+..+|-+.|+.+++..++++..+-.
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D 146 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD 146 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 44677888889999999999999999998876
No 496
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=20.10 E-value=1.8e+02 Score=16.40 Aligned_cols=54 Identities=11% Similarity=0.238 Sum_probs=33.9
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh
Q 034447 31 IYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQSD 89 (94)
Q Consensus 31 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 89 (94)
+|-.=.....+.+-.+|+.+|+++-++|= +--.+++.+|. ..|+..|+.+++..
T Consensus 60 LWI~RINAA~R~~GlsYS~fi~gLkkA~I-~inRKvLadlA----i~d~~aF~~lv~~a 113 (118)
T COG0292 60 LWIARINAAARENGLSYSRFINGLKKAGI-EIDRKVLADLA----INDPAAFAALVEKA 113 (118)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHcCc-hhhHHHHHHHH----hcCHHHHHHHHHHH
Confidence 44333334445667789999999888772 22234555554 35788888888763
No 497
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=20.05 E-value=1.4e+02 Score=14.84 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=15.7
Q ss_pred hcCCHHHHHHHHHHHHHcCC
Q 034447 56 RNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 56 ~~g~~~~a~~~~~~m~~~g~ 75 (94)
.....++|.++.+.|.+.|+
T Consensus 43 ~~~~r~ea~~~~~~ll~~g~ 62 (81)
T cd04371 43 EAITREEAVELGQALLKHGL 62 (81)
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 33678888888888888775
Done!