Query 034447
Match_columns 94
No_of_seqs 124 out of 1125
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 04:10:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034447.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034447hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 99.9 4.6E-26 1.6E-30 151.6 11.1 91 1-91 96-187 (501)
2 4g26_A Pentatricopeptide repea 99.9 6E-24 2.1E-28 141.4 11.2 91 1-91 131-222 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 1.3E-24 4.3E-29 152.6 6.0 81 6-86 162-243 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 3.8E-23 1.3E-27 145.2 10.7 84 8-91 126-212 (1134)
5 2xpi_A Anaphase-promoting comp 98.9 8.2E-08 2.8E-12 63.7 11.9 80 8-88 474-559 (597)
6 2xpi_A Anaphase-promoting comp 98.8 5.6E-08 1.9E-12 64.5 9.8 82 7-89 439-526 (597)
7 2fo7_A Synthetic consensus TPR 98.0 0.00023 7.7E-09 37.7 11.2 79 8-88 34-112 (136)
8 1w3b_A UDP-N-acetylglucosamine 98.0 0.00015 5.2E-09 45.8 10.9 60 11-71 273-332 (388)
9 1na0_A Designed protein CTPR3; 98.0 0.00034 1.2E-08 36.6 11.0 78 9-88 9-86 (125)
10 2fo7_A Synthetic consensus TPR 97.9 0.00039 1.3E-08 36.7 10.5 76 11-88 3-78 (136)
11 1w3b_A UDP-N-acetylglucosamine 97.9 0.00046 1.6E-08 43.6 11.5 80 8-89 236-315 (388)
12 2ho1_A Type 4 fimbrial biogene 97.9 0.00095 3.3E-08 39.5 11.9 60 11-70 107-167 (252)
13 2y4t_A DNAJ homolog subfamily 97.9 0.00044 1.5E-08 44.2 10.9 79 8-88 25-103 (450)
14 3mkr_A Coatomer subunit epsilo 97.8 0.00037 1.3E-08 43.2 9.8 31 43-73 129-159 (291)
15 1b89_A Protein (clathrin heavy 97.7 5.7E-05 2E-09 50.1 5.5 70 6-90 119-188 (449)
16 2ho1_A Type 4 fimbrial biogene 97.7 0.0012 4.2E-08 39.0 11.0 80 8-88 70-150 (252)
17 2gw1_A Mitochondrial precursor 97.7 0.00069 2.4E-08 43.9 10.6 67 7-74 37-103 (514)
18 2gw1_A Mitochondrial precursor 97.7 0.00076 2.6E-08 43.7 9.8 78 8-88 5-82 (514)
19 1na0_A Designed protein CTPR3; 97.7 0.0012 4.2E-08 34.4 11.0 66 8-74 42-107 (125)
20 3as5_A MAMA; tetratricopeptide 97.7 0.0018 6.1E-08 36.0 11.3 62 9-71 42-103 (186)
21 4eqf_A PEX5-related protein; a 97.6 0.0018 6.2E-08 40.4 11.1 79 8-88 212-290 (365)
22 3mkr_A Coatomer subunit epsilo 97.6 0.002 7E-08 39.8 10.8 49 23-72 180-228 (291)
23 2vq2_A PILW, putative fimbrial 97.6 0.0027 9.2E-08 36.5 11.7 26 45-70 114-139 (225)
24 3ma5_A Tetratricopeptide repea 97.6 0.0014 4.7E-08 34.0 8.6 64 8-72 6-69 (100)
25 3cv0_A Peroxisome targeting si 97.6 0.0021 7.1E-08 39.1 10.5 62 9-71 206-267 (327)
26 3k9i_A BH0479 protein; putativ 97.6 0.0019 6.5E-08 34.2 9.4 81 8-89 26-107 (117)
27 2vq2_A PILW, putative fimbrial 97.6 0.003 1E-07 36.3 11.9 63 9-72 42-105 (225)
28 1fch_A Peroxisomal targeting s 97.6 0.003 1E-07 39.3 11.2 79 8-88 216-294 (368)
29 2y4t_A DNAJ homolog subfamily 97.5 0.0031 1.1E-07 40.3 11.0 67 7-74 58-124 (450)
30 2pl2_A Hypothetical conserved 97.5 0.0035 1.2E-07 36.9 10.4 78 8-88 117-194 (217)
31 3as5_A MAMA; tetratricopeptide 97.5 0.0034 1.1E-07 34.9 11.2 79 8-88 75-153 (186)
32 3cv0_A Peroxisome targeting si 97.5 0.0054 1.9E-07 37.3 11.3 79 8-88 171-249 (327)
33 2l6j_A TPR repeat-containing p 97.4 0.0025 8.6E-08 32.8 8.5 67 7-74 2-68 (111)
34 3uq3_A Heat shock protein STI1 97.4 0.0016 5.5E-08 38.3 8.5 64 8-73 4-67 (258)
35 2kat_A Uncharacterized protein 97.4 0.0035 1.2E-07 32.9 8.8 64 8-72 18-81 (115)
36 1elr_A TPR2A-domain of HOP; HO 97.4 0.0035 1.2E-07 32.9 8.5 64 9-73 4-67 (131)
37 3vtx_A MAMA; tetratricopeptide 97.4 0.0044 1.5E-07 35.0 9.4 65 8-73 106-170 (184)
38 2q7f_A YRRB protein; TPR, prot 97.3 0.0068 2.3E-07 35.3 11.1 23 12-34 60-82 (243)
39 1elr_A TPR2A-domain of HOP; HO 97.3 0.0041 1.4E-07 32.6 9.8 77 8-86 37-119 (131)
40 1fch_A Peroxisomal targeting s 97.3 0.0044 1.5E-07 38.5 9.9 81 8-89 250-340 (368)
41 3uq3_A Heat shock protein STI1 97.3 0.0073 2.5E-07 35.4 11.0 79 8-88 138-216 (258)
42 4eqf_A PEX5-related protein; a 97.3 0.0034 1.2E-07 39.2 9.4 60 12-72 68-127 (365)
43 2kck_A TPR repeat; tetratricop 97.3 0.0039 1.3E-07 31.8 8.9 79 9-88 6-85 (112)
44 1b89_A Protein (clathrin heavy 97.3 3.6E-05 1.2E-09 51.0 0.1 54 10-70 95-148 (449)
45 2q7f_A YRRB protein; TPR, prot 97.3 0.008 2.7E-07 35.0 11.5 79 8-88 90-168 (243)
46 3sz7_A HSC70 cochaperone (SGT) 97.3 0.0059 2E-07 34.1 9.2 65 8-73 10-74 (164)
47 2vyi_A SGTA protein; chaperone 97.2 0.0054 1.8E-07 32.1 10.3 63 9-72 46-108 (131)
48 2kck_A TPR repeat; tetratricop 97.2 0.0049 1.7E-07 31.4 8.9 66 8-74 39-107 (112)
49 3nf1_A KLC 1, kinesin light ch 97.2 0.0071 2.4E-07 36.5 9.7 66 8-73 26-98 (311)
50 2xcb_A PCRH, regulatory protei 97.2 0.006 2.1E-07 33.4 8.6 63 10-73 19-81 (142)
51 3vtx_A MAMA; tetratricopeptide 97.2 0.0089 3.1E-07 33.7 10.8 66 8-74 4-69 (184)
52 3gyz_A Chaperone protein IPGC; 97.2 0.0092 3.1E-07 33.6 11.0 65 8-73 35-99 (151)
53 1xnf_A Lipoprotein NLPI; TPR, 97.2 0.0056 1.9E-07 36.4 8.8 63 9-72 43-105 (275)
54 2lni_A Stress-induced-phosphop 97.2 0.0071 2.4E-07 31.9 10.3 64 8-72 15-78 (133)
55 1xnf_A Lipoprotein NLPI; TPR, 97.2 0.013 4.4E-07 34.8 11.1 66 8-74 76-141 (275)
56 1elw_A TPR1-domain of HOP; HOP 97.2 0.0064 2.2E-07 31.2 10.5 63 9-72 38-100 (118)
57 3q49_B STIP1 homology and U bo 97.1 0.0082 2.8E-07 32.1 9.2 66 7-73 7-72 (137)
58 3sz7_A HSC70 cochaperone (SGT) 97.1 0.01 3.4E-07 33.1 10.9 65 8-73 44-108 (164)
59 1hh8_A P67PHOX, NCF-2, neutrop 97.1 0.012 4.2E-07 33.8 12.0 67 6-73 34-100 (213)
60 3upv_A Heat shock protein STI1 97.1 0.0085 2.9E-07 31.8 9.2 64 8-72 37-100 (126)
61 2vgx_A Chaperone SYCD; alterna 97.1 0.0084 2.9E-07 33.3 8.6 63 9-72 21-83 (148)
62 3gyz_A Chaperone protein IPGC; 97.1 0.0074 2.5E-07 34.0 8.4 66 8-74 69-134 (151)
63 2lni_A Stress-induced-phosphop 97.1 0.0085 2.9E-07 31.5 10.5 66 8-74 49-114 (133)
64 2dba_A Smooth muscle cell asso 97.1 0.0093 3.2E-07 32.0 8.9 65 7-73 26-94 (148)
65 2pl2_A Hypothetical conserved 97.1 0.01 3.6E-07 34.8 9.3 77 8-88 72-160 (217)
66 2vyi_A SGTA protein; chaperone 97.1 0.0084 2.9E-07 31.3 11.2 81 6-88 9-89 (131)
67 1a17_A Serine/threonine protei 97.1 0.011 3.9E-07 32.4 9.2 65 8-73 46-110 (166)
68 4gco_A Protein STI-1; structur 97.1 0.011 3.6E-07 32.0 9.2 62 9-71 47-108 (126)
69 2xev_A YBGF; tetratricopeptide 97.0 0.0097 3.3E-07 31.4 8.2 61 11-73 41-105 (129)
70 1hh8_A P67PHOX, NCF-2, neutrop 97.0 0.015 5.1E-07 33.4 10.2 75 9-88 6-80 (213)
71 3nf1_A KLC 1, kinesin light ch 97.0 0.0099 3.4E-07 35.8 9.1 65 8-72 152-223 (311)
72 3hym_B Cell division cycle pro 97.0 0.015 5.1E-07 35.3 9.9 65 8-72 192-264 (330)
73 2dba_A Smooth muscle cell asso 97.0 0.012 4E-07 31.6 11.3 65 9-74 65-129 (148)
74 3hym_B Cell division cycle pro 97.0 0.016 5.5E-07 35.2 9.9 62 10-72 160-221 (330)
75 3q49_B STIP1 homology and U bo 97.0 0.012 4.1E-07 31.4 11.3 64 8-72 42-105 (137)
76 3edt_B KLC 2, kinesin light ch 97.0 0.013 4.4E-07 34.7 9.0 66 8-73 42-114 (283)
77 1na3_A Designed protein CTPR2; 97.0 0.0089 3E-07 29.5 10.8 78 8-87 8-85 (91)
78 2vgx_A Chaperone SYCD; alterna 96.9 0.016 5.5E-07 32.1 11.1 65 8-73 54-118 (148)
79 2ooe_A Cleavage stimulation fa 96.9 0.024 8E-07 37.6 10.8 75 8-86 12-86 (530)
80 2ond_A Cleavage stimulation fa 96.9 0.016 5.6E-07 35.7 9.5 62 10-71 204-268 (308)
81 3edt_B KLC 2, kinesin light ch 96.9 0.011 3.9E-07 34.9 8.4 66 8-73 126-198 (283)
82 4ga2_A E3 SUMO-protein ligase 96.9 0.018 6.1E-07 31.9 10.0 77 10-88 32-108 (150)
83 3rkv_A Putative peptidylprolyl 96.9 0.016 5.5E-07 32.2 8.6 65 8-73 62-126 (162)
84 3qww_A SET and MYND domain-con 96.9 0.013 4.4E-07 38.7 9.1 64 9-72 340-410 (433)
85 3k9i_A BH0479 protein; putativ 96.9 0.0038 1.3E-07 33.0 5.5 67 21-88 2-70 (117)
86 4i17_A Hypothetical protein; T 96.8 0.027 9.2E-07 32.8 11.6 64 8-72 41-104 (228)
87 1hxi_A PEX5, peroxisome target 96.8 0.011 3.6E-07 31.7 7.1 63 11-74 19-81 (121)
88 3fp2_A TPR repeat-containing p 96.8 0.03 1E-06 36.5 10.1 65 8-73 309-373 (537)
89 3upv_A Heat shock protein STI1 96.8 0.019 6.6E-07 30.3 10.7 79 8-88 3-81 (126)
90 3ieg_A DNAJ homolog subfamily 96.7 0.04 1.4E-06 33.7 10.2 61 11-72 5-65 (359)
91 4gcn_A Protein STI-1; structur 96.7 0.022 7.5E-07 30.7 9.1 63 9-72 8-70 (127)
92 3ieg_A DNAJ homolog subfamily 96.7 0.03 1E-06 34.2 9.5 65 8-73 153-217 (359)
93 1elw_A TPR1-domain of HOP; HOP 96.7 0.018 6.1E-07 29.4 10.2 80 7-88 2-81 (118)
94 2xcb_A PCRH, regulatory protei 96.7 0.026 9E-07 30.7 11.1 65 8-73 51-115 (142)
95 3fp2_A TPR repeat-containing p 96.7 0.02 6.8E-07 37.3 8.8 63 10-73 26-88 (537)
96 2r5s_A Uncharacterized protein 96.6 0.018 6.1E-07 32.5 7.6 61 26-88 91-153 (176)
97 3n71_A Histone lysine methyltr 96.6 0.025 8.6E-07 37.9 9.1 64 8-71 350-420 (490)
98 2kc7_A BFR218_protein; tetratr 96.6 0.02 7E-07 28.9 7.3 58 16-74 7-65 (99)
99 3qwp_A SET and MYND domain-con 96.6 0.024 8.2E-07 37.3 8.9 63 9-71 329-398 (429)
100 2ond_A Cleavage stimulation fa 96.6 0.029 9.9E-07 34.6 8.8 65 8-74 98-164 (308)
101 4abn_A Tetratricopeptide repea 96.6 0.034 1.2E-06 36.6 9.4 62 9-72 137-207 (474)
102 4i17_A Hypothetical protein; T 96.5 0.047 1.6E-06 31.8 10.0 81 7-88 5-85 (228)
103 3u4t_A TPR repeat-containing p 96.5 0.039 1.3E-06 32.7 8.7 62 11-72 39-102 (272)
104 2fbn_A 70 kDa peptidylprolyl i 96.5 0.048 1.7E-06 31.2 8.7 63 10-73 89-151 (198)
105 4gcn_A Protein STI-1; structur 96.4 0.037 1.3E-06 29.8 9.2 75 8-84 41-121 (127)
106 2c2l_A CHIP, carboxy terminus 96.4 0.061 2.1E-06 32.9 9.4 63 8-71 37-99 (281)
107 3u3w_A Transcriptional activat 96.4 0.039 1.3E-06 33.7 8.5 64 9-72 155-224 (293)
108 2ff4_A Probable regulatory pro 96.4 0.063 2.2E-06 34.8 9.7 69 13-82 175-248 (388)
109 3mv2_B Coatomer subunit epsilo 96.4 0.081 2.8E-06 33.6 9.8 68 6-73 97-165 (310)
110 1p5q_A FKBP52, FK506-binding p 96.3 0.058 2E-06 33.9 9.1 78 9-88 196-273 (336)
111 4abn_A Tetratricopeptide repea 96.3 0.071 2.4E-06 35.1 9.7 79 8-89 101-180 (474)
112 1ouv_A Conserved hypothetical 96.3 0.077 2.6E-06 31.7 11.6 16 57-72 127-142 (273)
113 1ouv_A Conserved hypothetical 96.3 0.079 2.7E-06 31.7 11.6 61 11-74 40-108 (273)
114 4gyw_A UDP-N-acetylglucosamine 96.3 0.12 4E-06 36.3 10.9 63 8-72 8-71 (723)
115 2e2e_A Formate-dependent nitri 96.2 0.059 2E-06 30.1 9.8 65 8-73 43-110 (177)
116 1ihg_A Cyclophilin 40; ppiase 96.2 0.072 2.4E-06 34.2 9.3 65 8-73 272-336 (370)
117 3u4t_A TPR repeat-containing p 96.2 0.08 2.7E-06 31.3 10.6 63 10-73 75-137 (272)
118 3urz_A Uncharacterized protein 96.2 0.074 2.5E-06 30.9 10.5 72 15-88 60-131 (208)
119 2hr2_A Hypothetical protein; a 96.2 0.073 2.5E-06 30.5 9.1 78 9-86 57-149 (159)
120 3mv2_B Coatomer subunit epsilo 96.2 0.08 2.8E-06 33.6 9.1 76 8-87 135-219 (310)
121 1p5q_A FKBP52, FK506-binding p 96.2 0.11 3.8E-06 32.6 10.9 78 8-88 146-239 (336)
122 1wao_1 Serine/threonine protei 96.2 0.074 2.5E-06 35.2 9.3 65 8-73 39-103 (477)
123 1a17_A Serine/threonine protei 96.1 0.061 2.1E-06 29.3 11.2 78 9-88 13-90 (166)
124 3ulq_A Response regulator aspa 96.1 0.099 3.4E-06 32.9 9.5 63 10-72 225-292 (383)
125 4gyw_A UDP-N-acetylglucosamine 96.1 0.2 7E-06 35.1 11.4 62 9-72 77-139 (723)
126 3ly7_A Transcriptional activat 96.1 0.13 4.5E-06 33.5 9.8 75 6-84 274-348 (372)
127 2yhc_A BAMD, UPF0169 lipoprote 96.0 0.098 3.3E-06 30.6 9.6 64 10-73 5-70 (225)
128 2e2e_A Formate-dependent nitri 96.0 0.082 2.8E-06 29.5 8.8 66 8-74 77-145 (177)
129 2vsy_A XCC0866; transferase, g 96.0 0.19 6.4E-06 33.6 11.5 62 9-71 23-84 (568)
130 3gw4_A Uncharacterized protein 96.0 0.072 2.5E-06 30.1 7.8 65 8-72 65-135 (203)
131 2vsy_A XCC0866; transferase, g 96.0 0.19 6.5E-06 33.6 11.1 79 8-88 56-134 (568)
132 1qqe_A Vesicular transport pro 96.0 0.12 4.2E-06 31.5 9.1 66 9-74 117-188 (292)
133 3ro3_A PINS homolog, G-protein 96.0 0.045 1.5E-06 29.3 6.6 64 9-72 9-77 (164)
134 1qqe_A Vesicular transport pro 95.9 0.067 2.3E-06 32.7 7.9 64 9-72 158-227 (292)
135 4gco_A Protein STI-1; structur 95.9 0.079 2.7E-06 28.4 11.0 78 9-88 13-90 (126)
136 2ooe_A Cleavage stimulation fa 95.8 0.21 7E-06 33.1 10.3 64 8-73 320-385 (530)
137 4ga2_A E3 SUMO-protein ligase 95.8 0.096 3.3E-06 28.9 8.5 77 8-87 64-142 (150)
138 2c2l_A CHIP, carboxy terminus 95.8 0.16 5.5E-06 31.0 11.1 79 8-88 3-81 (281)
139 3ro3_A PINS homolog, G-protein 95.7 0.092 3.1E-06 28.1 7.5 63 10-72 50-117 (164)
140 2ifu_A Gamma-SNAP; membrane fu 95.7 0.17 5.6E-06 31.2 9.1 63 9-71 155-222 (307)
141 3ro2_A PINS homolog, G-protein 95.7 0.14 4.6E-06 30.8 8.6 61 11-71 7-70 (338)
142 4g1t_A Interferon-induced prot 95.6 0.17 5.8E-06 32.5 9.1 65 8-72 50-122 (472)
143 3q15_A PSP28, response regulat 95.6 0.14 4.9E-06 32.2 8.7 64 9-72 222-289 (378)
144 2qfc_A PLCR protein; TPR, HTH, 95.6 0.18 6.2E-06 30.7 9.6 64 9-72 155-224 (293)
145 3gw4_A Uncharacterized protein 95.6 0.13 4.5E-06 28.9 8.1 65 8-72 25-94 (203)
146 3qou_A Protein YBBN; thioredox 95.6 0.11 3.7E-06 31.8 7.8 62 10-73 118-180 (287)
147 1hxi_A PEX5, peroxisome target 95.6 0.11 3.7E-06 27.6 9.7 64 8-73 50-114 (121)
148 3q15_A PSP28, response regulat 95.5 0.23 7.7E-06 31.3 9.3 64 9-72 182-250 (378)
149 3u3w_A Transcriptional activat 95.5 0.2 6.8E-06 30.5 8.6 62 11-72 117-183 (293)
150 1kt0_A FKBP51, 51 kDa FK506-bi 95.5 0.18 6E-06 33.1 8.8 64 9-73 317-380 (457)
151 2xev_A YBGF; tetratricopeptide 95.4 0.11 3.9E-06 27.1 10.3 59 14-74 7-69 (129)
152 3ulq_A Response regulator aspa 95.4 0.27 9.1E-06 30.9 9.9 64 9-72 184-252 (383)
153 3ro2_A PINS homolog, G-protein 95.4 0.1 3.4E-06 31.4 7.0 65 8-72 222-291 (338)
154 2h6f_A Protein farnesyltransfe 95.3 0.29 9.9E-06 31.6 9.4 60 11-72 99-160 (382)
155 3qky_A Outer membrane assembly 95.3 0.23 7.7E-06 29.5 9.8 64 8-73 14-81 (261)
156 2yhc_A BAMD, UPF0169 lipoprote 95.3 0.19 6.5E-06 29.4 7.8 60 15-74 153-214 (225)
157 2if4_A ATFKBP42; FKBP-like, al 95.2 0.13 4.6E-06 32.3 7.5 61 11-72 232-292 (338)
158 2y69_E Cytochrome C oxidase su 95.2 0.2 6.7E-06 28.3 8.6 71 17-88 60-131 (152)
159 3sf4_A G-protein-signaling mod 95.2 0.13 4.3E-06 32.1 7.2 62 9-70 267-333 (406)
160 4a1s_A PINS, partner of inscut 95.1 0.13 4.5E-06 32.3 7.1 63 10-72 87-154 (411)
161 4a1s_A PINS, partner of inscut 95.0 0.29 9.8E-06 30.8 8.6 63 10-72 49-114 (411)
162 3qky_A Outer membrane assembly 94.8 0.31 1.1E-05 28.9 8.2 65 9-73 52-126 (261)
163 2ifu_A Gamma-SNAP; membrane fu 94.8 0.17 5.7E-06 31.2 7.0 63 9-72 116-183 (307)
164 3rkv_A Putative peptidylprolyl 94.8 0.24 8.3E-06 27.2 9.3 80 8-88 10-106 (162)
165 2pzi_A Probable serine/threoni 94.6 0.48 1.6E-05 32.7 9.3 66 8-74 432-497 (681)
166 1kt0_A FKBP51, 51 kDa FK506-bi 94.6 0.57 2E-05 30.7 10.1 77 9-88 268-360 (457)
167 2h6f_A Protein farnesyltransfe 94.6 0.54 1.8E-05 30.3 10.4 78 8-88 130-209 (382)
168 2fbn_A 70 kDa peptidylprolyl i 94.5 0.33 1.1E-05 27.6 11.8 79 9-88 38-131 (198)
169 3bee_A Putative YFRE protein; 94.5 0.22 7.6E-06 25.6 8.7 66 7-74 4-73 (93)
170 3sf4_A G-protein-signaling mod 94.5 0.48 1.7E-05 29.4 9.6 67 6-72 6-75 (406)
171 1ihg_A Cyclophilin 40; ppiase 94.4 0.56 1.9E-05 30.0 10.1 78 10-88 224-316 (370)
172 2qfc_A PLCR protein; TPR, HTH, 94.4 0.34 1.2E-05 29.4 7.6 61 10-70 197-263 (293)
173 3qwp_A SET and MYND domain-con 94.4 0.51 1.7E-05 31.0 8.8 60 13-72 291-357 (429)
174 2v5f_A Prolyl 4-hydroxylase su 94.3 0.25 8.7E-06 25.6 9.7 66 8-73 4-75 (104)
175 1wy6_A Hypothetical protein ST 94.3 0.38 1.3E-05 27.5 8.6 68 8-76 90-157 (172)
176 3qou_A Protein YBBN; thioredox 93.9 0.41 1.4E-05 29.2 7.3 70 19-89 195-265 (287)
177 3urz_A Uncharacterized protein 93.9 0.49 1.7E-05 27.3 11.0 72 14-88 9-97 (208)
178 1v54_E Cytochrome C oxidase po 93.7 0.41 1.4E-05 25.6 9.4 75 13-88 13-88 (109)
179 1wao_1 Serine/threonine protei 93.6 0.74 2.5E-05 30.4 8.4 69 18-88 15-83 (477)
180 1xi4_A Clathrin heavy chain; a 93.4 0.72 2.5E-05 35.4 8.7 61 8-74 1104-1164(1630)
181 3n71_A Histone lysine methyltr 93.3 1.1 3.8E-05 30.0 9.0 54 19-72 319-379 (490)
182 2r5s_A Uncharacterized protein 92.9 0.65 2.2E-05 25.9 9.3 63 8-70 107-170 (176)
183 3rjv_A Putative SEL1 repeat pr 92.9 0.76 2.6E-05 26.6 10.2 64 7-74 16-83 (212)
184 4b4t_Q 26S proteasome regulato 92.9 1.1 3.7E-05 28.3 8.3 64 9-72 135-203 (434)
185 1hz4_A MALT regulatory protein 92.9 0.93 3.2E-05 28.2 7.8 61 12-72 96-163 (373)
186 2if4_A ATFKBP42; FKBP-like, al 92.9 1.1 3.7E-05 28.2 8.5 77 9-88 179-273 (338)
187 3qww_A SET and MYND domain-con 92.9 0.55 1.9E-05 31.0 6.9 51 22-72 311-368 (433)
188 1hz4_A MALT regulatory protein 92.7 1.1 3.7E-05 27.9 9.1 64 9-72 135-202 (373)
189 1zu2_A Mitochondrial import re 92.6 0.75 2.6E-05 26.3 6.5 77 8-88 35-133 (158)
190 1pc2_A Mitochondria fission pr 92.5 0.84 2.9E-05 26.0 8.5 67 6-73 29-100 (152)
191 4f3v_A ESX-1 secretion system 92.3 1.3 4.3E-05 27.7 10.4 62 12-73 174-237 (282)
192 1v54_E Cytochrome C oxidase po 92.2 0.61 2.1E-05 25.0 5.3 46 6-52 42-87 (109)
193 4e6h_A MRNA 3'-END-processing 91.9 2.3 7.8E-05 29.8 10.2 80 7-87 64-147 (679)
194 2uwj_G Type III export protein 91.4 0.92 3.1E-05 24.3 5.3 64 14-84 44-107 (115)
195 3u64_A Protein TP_0956; tetrat 91.3 1.8 6.2E-05 27.4 8.2 76 9-86 199-284 (301)
196 2p58_C Putative type III secre 91.1 1 3.5E-05 24.2 6.0 64 14-84 45-108 (116)
197 4g1t_A Interferon-induced prot 90.4 2.4 8E-05 27.1 7.9 65 8-72 333-400 (472)
198 2hr2_A Hypothetical protein; a 90.3 1.6 5.3E-05 25.0 8.2 61 11-73 13-86 (159)
199 4b4t_Q 26S proteasome regulato 89.0 2 6.8E-05 27.1 6.6 56 17-72 12-83 (434)
200 2pzi_A Probable serine/threoni 88.8 1.7 5.8E-05 30.0 6.5 60 8-70 466-526 (681)
201 1xi4_A Clathrin heavy chain; a 88.7 6.9 0.00024 30.4 9.8 54 8-70 1194-1247(1630)
202 3rjv_A Putative SEL1 repeat pr 88.3 2.4 8.2E-05 24.4 10.5 65 9-73 85-158 (212)
203 4h7y_A Dual specificity protei 88.3 2.4 8.2E-05 24.4 7.5 70 22-93 73-142 (161)
204 4f3v_A ESX-1 secretion system 88.1 3.4 0.00012 25.8 10.0 67 11-78 137-205 (282)
205 2y69_E Cytochrome C oxidase su 87.6 2.2 7.4E-05 24.1 5.3 46 6-52 85-130 (152)
206 2ion_A PDCD4, programmed cell 87.4 2.6 8.9E-05 23.8 8.3 70 11-81 11-82 (152)
207 2kat_A Uncharacterized protein 87.4 1.8 6.2E-05 22.0 7.0 60 27-88 3-62 (115)
208 2xm6_A Protein corresponding t 86.9 4.8 0.00016 26.2 11.6 47 23-72 165-215 (490)
209 1klx_A Cysteine rich protein B 86.8 2.4 8.2E-05 22.8 8.8 63 10-75 58-128 (138)
210 2xm6_A Protein corresponding t 86.2 5.2 0.00018 26.1 11.6 15 22-36 92-106 (490)
211 4b4t_R RPN7, 26S proteasome re 85.2 4.9 0.00017 26.3 6.9 62 11-72 133-196 (429)
212 3mkq_A Coatomer beta'-subunit; 84.8 1.9 6.5E-05 29.7 5.0 45 21-71 664-708 (814)
213 2ff4_A Probable regulatory pro 83.8 2.4 8.2E-05 27.4 4.9 42 8-49 204-250 (388)
214 2nsz_A Programmed cell death p 83.7 3.8 0.00013 22.4 9.6 70 11-81 9-80 (129)
215 3eiq_C Programmed cell death p 82.1 8.1 0.00028 25.0 8.7 75 10-85 218-294 (358)
216 1na3_A Designed protein CTPR2; 81.4 3.1 0.00011 19.7 6.6 48 8-56 42-89 (91)
217 3esl_A Checkpoint serine/threo 79.3 7.8 0.00027 23.1 7.4 55 24-78 94-149 (202)
218 2uwj_G Type III export protein 79.2 5.5 0.00019 21.3 4.5 58 24-87 21-78 (115)
219 4gns_B Protein CSD3, chitin bi 79.0 8.6 0.0003 27.5 6.6 52 18-71 346-398 (754)
220 2p58_C Putative type III secre 78.9 5.7 0.00019 21.3 5.8 58 24-87 22-79 (116)
221 4e6h_A MRNA 3'-END-processing 78.7 15 0.0005 25.8 9.1 62 12-73 507-570 (679)
222 2wvi_A Mitotic checkpoint seri 78.4 7.5 0.00026 22.3 6.3 54 26-79 77-131 (164)
223 3ma5_A Tetratricopeptide repea 77.5 5.1 0.00017 19.9 6.8 45 43-88 6-50 (100)
224 1ug3_A EIF4GI, eukaryotic prot 77.2 5.6 0.00019 25.3 4.9 66 11-77 13-79 (339)
225 4aez_C MAD3, mitotic spindle c 76.5 10 0.00035 23.0 6.0 53 26-78 131-184 (223)
226 2l6j_A TPR repeat-containing p 76.1 5.4 0.00019 19.6 6.6 46 42-88 2-47 (111)
227 3dra_A Protein farnesyltransfe 74.6 13 0.00045 23.2 7.9 65 8-72 219-286 (306)
228 1wgl_A TOLL-interacting protei 73.7 3.8 0.00013 19.4 2.7 47 25-78 9-57 (59)
229 3mkq_B Coatomer subunit alpha; 73.7 11 0.00037 21.9 7.1 49 17-71 13-61 (177)
230 1zbp_A Hypothetical protein VP 73.1 14 0.00049 23.0 7.6 71 17-88 5-77 (273)
231 1wy6_A Hypothetical protein ST 72.5 11 0.00038 21.5 4.8 36 6-41 122-157 (172)
232 3o48_A Mitochondria fission 1 72.2 10 0.00036 21.1 5.1 68 6-73 37-107 (134)
233 4a1g_A Mitotic checkpoint seri 70.5 12 0.00042 21.2 7.1 53 26-78 82-135 (152)
234 3mkq_A Coatomer beta'-subunit; 70.4 23 0.0008 24.3 8.7 65 7-71 679-763 (814)
235 2zu6_B Programmed cell death p 69.3 19 0.00064 22.8 8.7 70 11-81 168-239 (307)
236 2rg8_A Programmed cell death p 69.1 14 0.00046 21.1 6.1 64 11-77 12-77 (165)
237 2ijq_A Hypothetical protein; s 68.6 14 0.00049 21.1 8.7 61 11-72 35-103 (161)
238 3e4b_A ALGK; tetratricopeptide 68.2 22 0.00074 23.1 9.7 48 23-74 231-281 (452)
239 3e4b_A ALGK; tetratricopeptide 68.0 22 0.00075 23.1 8.5 63 11-75 178-247 (452)
240 1y8m_A FIS1; mitochondria, unk 66.8 15 0.00051 20.7 5.9 56 17-73 47-106 (144)
241 3hzj_A Rabgap1L, RAB GTPase-ac 65.5 11 0.00036 23.5 4.2 45 31-75 176-220 (310)
242 3mkq_B Coatomer subunit alpha; 65.2 18 0.00061 21.0 7.0 63 8-70 33-115 (177)
243 2qq8_A TBC1 domain family memb 64.8 8.4 0.00029 24.4 3.7 45 30-74 214-258 (334)
244 3qye_A TBC1 domain family memb 64.8 9.7 0.00033 23.9 3.9 47 30-76 209-255 (331)
245 3l6a_A Eukaryotic translation 64.5 26 0.00088 22.7 8.1 71 10-80 13-84 (364)
246 3bu8_A Telomeric repeat-bindin 64.5 21 0.00073 21.7 6.4 49 25-73 88-143 (235)
247 1nzn_A CGI-135 protein, fissio 63.1 17 0.00057 19.9 8.5 67 7-73 33-103 (126)
248 1oai_A Nuclear RNA export fact 63.0 11 0.00037 17.8 3.9 21 57-77 33-53 (59)
249 2o03_A Probable zinc uptake re 62.6 16 0.00055 19.6 4.3 46 14-59 15-60 (131)
250 2qfz_A TBC1 domain family memb 61.6 24 0.00081 22.3 5.3 47 30-76 230-276 (345)
251 2uy1_A Cleavage stimulation fa 60.9 34 0.0011 22.8 9.7 63 10-73 287-349 (493)
252 3mwm_A ZUR, putative metal upt 60.7 16 0.00054 20.0 3.9 45 14-58 18-62 (139)
253 1zl8_A LIN-7; heterodimer, alp 59.2 8.2 0.00028 17.7 2.1 23 58-80 7-29 (53)
254 2yru_A Steroid receptor RNA ac 58.2 20 0.00069 19.4 9.1 65 10-74 20-91 (118)
255 2b7e_A PRE-mRNA processing pro 58.0 6 0.00021 18.8 1.6 34 26-59 3-37 (59)
256 1mzb_A Ferric uptake regulatio 56.4 21 0.00073 19.3 4.0 39 35-74 9-48 (136)
257 3ffl_A Anaphase-promoting comp 56.4 27 0.00091 20.2 5.2 60 11-70 22-89 (167)
258 2fe3_A Peroxide operon regulat 56.3 23 0.00079 19.4 4.6 46 33-79 11-56 (145)
259 1q2z_A ATP-dependent DNA helic 54.9 4.8 0.00016 21.8 1.1 49 24-75 42-94 (120)
260 2xig_A Ferric uptake regulatio 54.9 25 0.00085 19.5 4.1 48 31-79 14-61 (150)
261 3bge_A Predicted ATPase; struc 54.8 32 0.0011 20.5 5.0 38 21-58 19-56 (201)
262 3ly7_A Transcriptional activat 53.8 43 0.0015 21.8 6.5 41 41-83 274-314 (372)
263 2r9g_A AAA ATPase, central reg 53.6 33 0.0011 20.5 4.6 54 21-75 26-84 (204)
264 1fkm_A Protein (GYP1P), ORF YO 52.3 17 0.0006 23.6 3.6 45 30-74 217-261 (396)
265 2ko4_A Mediator of RNA polymer 52.1 9.6 0.00033 19.2 1.8 33 39-71 31-63 (81)
266 3ctd_A Putative ATPase, AAA fa 51.9 37 0.0013 20.4 5.0 30 51-80 39-71 (213)
267 3f3f_C Nucleoporin NUP85; stru 51.6 14 0.00048 25.6 3.1 73 12-86 482-557 (570)
268 3a54_A Protein-glutaminase; mu 51.3 31 0.0011 21.6 4.3 37 42-78 120-175 (305)
269 3eyy_A Putative iron uptake re 50.8 29 0.001 19.0 4.0 40 34-75 9-48 (145)
270 3cqc_A Nuclear pore complex pr 49.6 13 0.00046 23.0 2.6 24 47-70 37-60 (270)
271 1klx_A Cysteine rich protein B 49.6 28 0.00096 18.4 8.5 56 17-75 33-92 (138)
272 3cqc_A Nuclear pore complex pr 47.4 19 0.00064 22.3 3.0 27 11-37 36-62 (270)
273 2w57_A Ferric uptake regulatio 46.8 29 0.001 19.2 3.6 39 35-74 8-47 (150)
274 1dvk_A PRP18; PRE-mRNA splicin 45.4 44 0.0015 19.4 6.1 45 27-71 64-109 (173)
275 2uy1_A Cleavage stimulation fa 45.1 65 0.0022 21.4 8.2 55 12-71 357-411 (493)
276 1rw2_A ATP-dependent DNA helic 44.6 5.9 0.0002 22.5 0.4 31 24-54 73-104 (152)
277 2jp7_A MRNA export factor MEX6 44.5 12 0.00042 17.5 1.5 21 24-45 34-54 (57)
278 4gt9_A TS, tsase, thymidylate 43.7 52 0.0018 19.8 5.7 69 25-93 138-225 (232)
279 1dce_A Protein (RAB geranylger 43.0 77 0.0026 21.6 8.8 76 8-85 106-184 (567)
280 3bqo_A Telomeric repeat-bindin 42.9 35 0.0012 20.5 3.5 23 14-36 122-144 (211)
281 3qye_A TBC1 domain family memb 42.5 40 0.0014 21.1 4.0 65 6-70 220-288 (331)
282 2fu4_A Ferric uptake regulatio 42.3 30 0.001 16.6 3.5 40 34-74 7-47 (83)
283 4ets_A Ferric uptake regulatio 41.2 36 0.0012 19.1 3.4 47 26-73 14-61 (162)
284 2zk9_X Protein-glutaminase; de 40.8 54 0.0018 19.2 4.6 25 54-78 37-61 (185)
285 1jyo_E Protein tyrosine phosph 40.5 42 0.0014 17.8 5.1 32 43-74 42-73 (105)
286 4hl4_A TBC1 domain family memb 40.2 44 0.0015 20.6 3.9 44 31-75 190-234 (292)
287 4b4t_S RPN3, 26S proteasome re 38.8 87 0.003 21.5 5.4 66 6-71 228-297 (523)
288 2kxe_A DNA polymerase II small 38.8 36 0.0012 16.5 3.2 28 66-93 7-34 (75)
289 2es9_A Putative cytoplasmic pr 38.5 44 0.0015 17.5 4.1 53 25-77 13-68 (115)
290 2f6m_A Suppressor protein STP2 37.9 36 0.0012 16.4 4.0 45 11-56 4-48 (65)
291 3r88_A Anthranilate phosphorib 37.9 83 0.0028 20.5 8.0 66 8-74 22-89 (377)
292 3c1d_A Protein ORAA, regulator 37.9 54 0.0018 18.3 5.9 52 25-78 46-97 (159)
293 2ve8_A FTSK, DNA translocase F 37.1 36 0.0012 16.8 2.6 44 24-76 11-54 (73)
294 2i2x_B MTAC, methyltransferase 37.0 70 0.0024 19.4 5.5 34 55-88 47-80 (258)
295 1dce_A Protein (RAB geranylger 36.1 1E+02 0.0035 21.0 9.1 74 9-84 63-148 (567)
296 3txn_A 26S proteasome regulato 34.4 98 0.0033 20.3 8.2 59 14-72 104-167 (394)
297 2zu6_B Programmed cell death p 34.3 56 0.0019 20.6 3.7 60 11-72 5-66 (307)
298 1ixm_A SPO0B, protein (sporula 34.0 71 0.0024 18.6 6.2 44 26-71 16-59 (192)
299 2eab_A Alpha-fucosidase; glyco 34.0 1.4E+02 0.0048 22.0 6.5 35 44-78 722-756 (899)
300 4hw8_A Bacterial extracellular 33.9 29 0.00099 22.1 2.5 34 60-93 228-261 (420)
301 2bn5_A PSI; nuclear protein, s 33.7 30 0.001 14.2 2.8 22 50-71 8-29 (33)
302 2keb_A DNA polymerase subunit 32.6 58 0.002 17.1 3.7 31 26-56 26-56 (101)
303 2gha_A Maltose ABC transporter 32.5 34 0.0012 21.4 2.6 33 61-93 190-222 (382)
304 3nr7_A DNA-binding protein H-N 31.8 55 0.0019 16.6 5.9 63 15-80 16-78 (86)
305 3ezx_A MMCP 1, monomethylamine 31.8 78 0.0027 18.6 3.9 42 19-60 12-53 (215)
306 3kae_A CDC27, possible protein 30.8 88 0.003 18.7 7.6 52 18-69 71-139 (242)
307 3eiq_C Programmed cell death p 30.0 89 0.003 20.2 4.2 30 11-40 56-85 (358)
308 1uzc_A Hypothetical protein FL 29.9 40 0.0014 16.4 2.1 27 60-87 14-41 (71)
309 1k1a_A B-cell lymphoma 3-encod 29.8 79 0.0027 17.8 3.9 27 16-42 13-39 (241)
310 2hm2_Q ASC2, pyrin-only protei 29.6 29 0.00098 17.5 1.6 28 45-72 51-78 (89)
311 2dhy_A CUE domain-containing p 29.6 53 0.0018 15.8 5.2 47 24-75 17-63 (67)
312 1khd_A Anthranilate phosphorib 29.6 1.1E+02 0.0039 19.6 8.4 74 1-75 1-77 (345)
313 3lxu_X Tripeptidyl-peptidase 2 29.4 2E+02 0.007 22.4 8.2 80 12-93 1237-1332(1354)
314 3oai_A Maltose-binding peripla 29.2 41 0.0014 21.9 2.6 34 60-93 188-221 (507)
315 2p22_A Suppressor protein STP2 29.0 89 0.003 18.1 4.0 46 10-56 112-157 (174)
316 2zxt_A Maltose-binding peripla 28.8 50 0.0017 21.6 3.0 33 61-93 189-221 (465)
317 1mh3_A Maltose binding-A1 home 28.6 43 0.0015 21.3 2.6 33 61-93 189-221 (421)
318 3m0z_A Putative aldolase; MCSG 28.6 16 0.00053 22.5 0.5 65 8-72 172-246 (249)
319 3gna_A RAG-1, V(D)J recombinat 28.4 63 0.0022 16.2 3.3 28 9-36 61-88 (96)
320 3n94_A Fusion protein of malto 28.1 44 0.0015 21.8 2.6 34 60-93 190-223 (475)
321 4ewi_A Nacht, LRR and PYD doma 28.0 33 0.0011 18.3 1.7 31 42-72 66-96 (113)
322 3mq9_A Bone marrow stromal ant 27.7 45 0.0015 21.9 2.6 34 60-93 202-235 (471)
323 2dod_A Transcription elongatio 27.6 47 0.0016 16.7 2.1 27 60-87 16-43 (82)
324 3t8k_A Uncharacterized protein 27.5 87 0.003 17.5 5.3 29 50-78 41-69 (186)
325 3m6y_A 4-hydroxy-2-oxoglutarat 27.5 16 0.00056 22.6 0.5 65 8-72 195-269 (275)
326 2cos_A Serine/threonine protei 27.4 54 0.0019 15.2 3.8 38 29-71 10-49 (54)
327 3ibx_A TENA, HP1287, putative 27.2 99 0.0034 18.1 5.5 52 6-57 110-172 (221)
328 4hs7_A Bacterial extracellular 27.1 44 0.0015 21.2 2.5 34 60-93 228-261 (420)
329 2zyo_A Solute-binding protein; 26.6 48 0.0016 20.8 2.5 34 60-93 208-241 (397)
330 3i3l_A Alkylhalidase CMLS; fla 26.6 62 0.0021 22.2 3.2 46 25-75 518-563 (591)
331 1otr_A Protein CUE2; protein-p 26.5 53 0.0018 14.8 4.1 42 25-71 4-45 (49)
332 3ffl_A Anaphase-promoting comp 26.5 98 0.0033 17.8 7.0 67 10-77 64-155 (167)
333 1pc2_A Mitochondria fission pr 26.3 93 0.0032 17.5 6.7 49 25-74 14-65 (152)
334 3ob4_A Conglutin, maltose ABC 26.3 49 0.0017 21.9 2.6 34 60-93 188-221 (500)
335 3py7_A Maltose-binding peripla 26.3 49 0.0017 22.0 2.6 34 60-93 189-222 (523)
336 3csg_A MBP, maltose-binding pr 26.1 50 0.0017 21.4 2.6 34 60-93 186-219 (461)
337 2gh9_A Maltose/maltodextrin-bi 25.9 44 0.0015 20.9 2.3 33 61-93 193-226 (386)
338 3iot_A Maltose-binding protein 25.7 50 0.0017 21.3 2.6 34 60-93 188-221 (449)
339 3qil_A Clathrin heavy chain 1; 25.5 90 0.0031 17.1 3.2 50 13-65 36-85 (125)
340 1nnv_A Hypothetical protein HI 25.5 85 0.0029 16.7 3.0 25 25-49 17-42 (110)
341 1urs_A Maltose-binding protein 25.5 69 0.0024 20.2 3.1 34 60-93 212-246 (402)
342 3bqs_A Uncharacterized protein 25.4 77 0.0026 16.2 3.9 29 26-54 34-62 (93)
343 1hsj_A Fusion protein consisti 25.1 54 0.0018 21.4 2.6 33 61-93 189-221 (487)
344 2xz3_A Maltose ABC transporter 24.8 55 0.0019 21.4 2.6 33 61-93 190-222 (463)
345 3hzj_A Rabgap1L, RAB GTPase-ac 24.7 1.3E+02 0.0044 18.6 5.8 67 6-72 186-256 (310)
346 2cwy_A Hypothetical protein TT 24.6 79 0.0027 16.1 3.9 60 15-77 8-74 (94)
347 4b4t_P 26S proteasome regulato 24.5 1.5E+02 0.0053 19.4 6.2 60 12-71 140-204 (445)
348 3o3u_N Maltose-binding peripla 24.2 56 0.0019 21.7 2.6 34 60-93 188-221 (581)
349 2rpa_A Katanin P60 ATPase-cont 24.1 76 0.0026 15.8 2.6 25 47-71 15-39 (78)
350 2e2a_A Protein (enzyme IIA); h 23.7 90 0.0031 16.4 3.9 19 19-37 30-48 (105)
351 3no6_A Transcriptional activat 23.6 1.3E+02 0.0044 18.2 7.2 82 6-88 126-219 (248)
352 2pk8_A Uncharacterized protein 23.3 79 0.0027 16.5 2.5 20 27-46 21-40 (103)
353 2vgq_A Maltose-binding peripla 22.9 63 0.0022 21.2 2.6 33 61-93 204-236 (477)
354 1x87_A Urocanase protein; stru 22.8 17 0.00059 24.9 -0.1 42 24-65 235-281 (551)
355 2crb_A Nuclear receptor bindin 22.8 92 0.0032 16.2 4.2 24 45-68 16-39 (97)
356 1r6z_P Chimera of maltose-bind 22.7 63 0.0022 21.4 2.6 33 61-93 190-222 (509)
357 1wcr_A PTS system, N, N'-diace 22.5 95 0.0033 16.3 3.9 18 19-36 28-45 (103)
358 2fkn_A Urocanate hydratase; ro 22.4 18 0.0006 24.8 -0.1 42 24-65 236-282 (552)
359 3h3g_A Fusion protein of malto 22.3 65 0.0022 21.6 2.6 34 60-93 190-223 (539)
360 3aji_A 26S proteasome non-ATPa 22.2 84 0.0029 17.7 2.9 19 16-34 10-28 (231)
361 1y4c_A Maltose binding protein 21.7 68 0.0023 21.4 2.6 33 61-93 189-221 (494)
362 3mp6_A MBP, SGF29, maltose-bin 21.7 68 0.0023 21.4 2.6 34 60-93 189-222 (522)
363 3t5v_B Nuclear mRNA export pro 21.0 2E+02 0.0067 19.3 7.0 60 10-69 177-245 (455)
364 3mab_A Uncharacterized protein 21.0 98 0.0034 15.8 3.5 29 27-55 35-63 (93)
365 2br9_A 14-3-3E, 14-3-3 protein 20.9 1.5E+02 0.0052 18.0 6.6 59 13-71 9-68 (234)
366 3osq_A Maltose-binding peripla 20.8 71 0.0024 22.3 2.6 34 60-93 470-503 (661)
367 2km6_A Nacht, LRR and PYD doma 20.7 31 0.0011 18.2 0.7 21 45-65 68-88 (106)
368 2xvc_A ESCRT-III, SSO0910; cel 20.6 82 0.0028 14.8 2.4 41 29-75 13-54 (59)
369 3qf2_A Nacht, LRR and PYD doma 20.1 43 0.0015 17.7 1.2 25 42-66 61-85 (110)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=4.6e-26 Score=151.61 Aligned_cols=91 Identities=8% Similarity=0.096 Sum_probs=85.6
Q ss_pred CcccC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 034447 1 MQQHG-KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDA 79 (94)
Q Consensus 1 M~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 79 (94)
|.+.| .||..|||++|.+|++.|++++|.++|++|.+.|+.||..|||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 96 M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 96 MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence 45566 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 034447 80 VTYNTVYQSDHI 91 (94)
Q Consensus 80 ~~~~~ll~~~~~ 91 (94)
.||++||++|++
T Consensus 176 ~ty~~Li~~~~~ 187 (501)
T 4g26_A 176 PELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999654
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.91 E-value=6e-24 Score=141.45 Aligned_cols=91 Identities=12% Similarity=0.140 Sum_probs=87.1
Q ss_pred CcccC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 034447 1 MQQHG-KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDA 79 (94)
Q Consensus 1 M~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 79 (94)
|++.| .||..|||++|.+|++.|++++|.++|++|.+.|+.||..||++||++|++.|++++|.+++++|++.|+.|+.
T Consensus 131 M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 131 MKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK 210 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred HHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH
Confidence 55666 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 034447 80 VTYNTVYQSDHI 91 (94)
Q Consensus 80 ~~~~~ll~~~~~ 91 (94)
.||++++..|++
T Consensus 211 ~T~~~l~~~F~s 222 (501)
T 4g26_A 211 STFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.90 E-value=1.3e-24 Score=152.57 Aligned_cols=81 Identities=12% Similarity=0.208 Sum_probs=40.2
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCccHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGK-FESSLKLFDKIKQSGLTPDAVTYNT 84 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ 84 (94)
.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||++|+++|+.|+ .++|.++|++|.+.|+.||.++|++
T Consensus 162 ~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ 241 (1134)
T 3spa_A 162 LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAV 241 (1134)
T ss_dssp TCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHS
T ss_pred CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhccc
Confidence 445555555555555555555555555555555555555555555555555444 2344455555555555555555554
Q ss_pred HH
Q 034447 85 VY 86 (94)
Q Consensus 85 ll 86 (94)
++
T Consensus 242 ll 243 (1134)
T 3spa_A 242 LL 243 (1134)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.89 E-value=3.8e-23 Score=145.16 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=79.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSIT---DESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNT 84 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~---~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 84 (94)
-..|||++|++||+.|++++|.++|++|. ..|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35799999999999999999999998876 458999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 034447 85 VYQSDHI 91 (94)
Q Consensus 85 ll~~~~~ 91 (94)
||+++++
T Consensus 206 LI~glcK 212 (1134)
T 3spa_A 206 ALQCMGR 212 (1134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999654
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.85 E-value=8.2e-08 Score=63.73 Aligned_cols=80 Identities=5% Similarity=-0.064 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDE----SDKVN--VFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVT 81 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 81 (94)
+..+|+.+...|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.+.|+++.+.+ +.+..+
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 552 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANV 552 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHH
Confidence 3445555555555555555555555555433 34444 4555555555555555555555555554433 224445
Q ss_pred HHHHHHH
Q 034447 82 YNTVYQS 88 (94)
Q Consensus 82 ~~~ll~~ 88 (94)
|..+..+
T Consensus 553 ~~~l~~~ 559 (597)
T 2xpi_A 553 HTAIALV 559 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.80 E-value=5.6e-08 Score=64.53 Aligned_cols=82 Identities=13% Similarity=0.032 Sum_probs=56.8
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcc--HH
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS----GLTPD--AV 80 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~ 80 (94)
.+..+|+.+..+|.+.|++++|.++|+++.+.. +.+..+|+.+...|.+.|++++|.++|+++.+. +..|+ ..
T Consensus 439 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 356677777777777777777777777776532 235677777777777777777777777777654 55666 66
Q ss_pred HHHHHHHHh
Q 034447 81 TYNTVYQSD 89 (94)
Q Consensus 81 ~~~~ll~~~ 89 (94)
+|..+..+|
T Consensus 518 ~~~~l~~~~ 526 (597)
T 2xpi_A 518 TWANLGHAY 526 (597)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777763
No 7
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.04 E-value=0.00023 Score=37.66 Aligned_cols=79 Identities=11% Similarity=0.156 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+...+..+...+.+.|++++|...+++..... +.+...+..+...+...|++++|.+.++++.+..- .+...+..+..
T Consensus 34 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 111 (136)
T 2fo7_A 34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGN 111 (136)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 55667777778888888888888888876543 23566777788888888888888888888776532 24455555555
Q ss_pred H
Q 034447 88 S 88 (94)
Q Consensus 88 ~ 88 (94)
.
T Consensus 112 ~ 112 (136)
T 2fo7_A 112 A 112 (136)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.02 E-value=0.00015 Score=45.79 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
+|..+...+.+.|++++|...|+++.+. .+.+..+|+.+...+.+.|++++|...++++.
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444444444332 12234444444444444444444444444443
No 9
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.95 E-value=0.00034 Score=36.62 Aligned_cols=78 Identities=12% Similarity=0.168 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
...|..+...+.+.|++++|...+++..... +.+..++..+...+...|++++|...++++.+..- .+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 4556666667777777777777777665432 23456666677777777777777777777665431 234444444443
No 10
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.93 E-value=0.00039 Score=36.70 Aligned_cols=76 Identities=11% Similarity=0.155 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
.|..+...+.+.|++++|..+++++.... +.+...+..+...+...|++++|...+++..+.+- .+...+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHH
Confidence 56778888999999999999999987653 23677888899999999999999999999887642 345556555554
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.90 E-value=0.00046 Score=43.57 Aligned_cols=80 Identities=9% Similarity=0.001 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+..++..+...+.+.|++++|...|+++.+.. +.+..+|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 57788889999999999999999999988653 2256788999999999999999999999987753 346677777766
Q ss_pred Hh
Q 034447 88 SD 89 (94)
Q Consensus 88 ~~ 89 (94)
.+
T Consensus 314 ~~ 315 (388)
T 1w3b_A 314 IK 315 (388)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 12
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.86 E-value=0.00095 Score=39.48 Aligned_cols=60 Identities=12% Similarity=0.035 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
.+..+...|.+.|++++|...+++....+..| +...+..+...+...|++++|...+++.
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS 167 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333444444444444444444443321122 3333334444444444444444444443
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.85 E-value=0.00044 Score=44.24 Aligned_cols=79 Identities=16% Similarity=0.067 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+...+..+...+.+.|++++|..+|+++.+. .+.+..+|..+..++...|++++|+..|+++.+.+- .+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHH
Confidence 5566777777777777777777777777653 223567777777777777777777777777766532 23455555554
Q ss_pred H
Q 034447 88 S 88 (94)
Q Consensus 88 ~ 88 (94)
.
T Consensus 103 ~ 103 (450)
T 2y4t_A 103 L 103 (450)
T ss_dssp H
T ss_pred H
Confidence 4
No 14
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.82 E-value=0.00037 Score=43.21 Aligned_cols=31 Identities=10% Similarity=0.223 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 43 NVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 43 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...+..+...+.+.|++++|.+.|+++.+.
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 3444444444445555555555555554443
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.75 E-value=5.7e-05 Score=50.10 Aligned_cols=70 Identities=14% Similarity=0.040 Sum_probs=39.4
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTV 85 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 85 (94)
.|+..+|+.+-..|...|.+++|...|..+ ..|..+..++.+.|++++|.+.+++. .+..+|..+
T Consensus 119 ~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v 183 (449)
T 1b89_A 119 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 183 (449)
T ss_dssp CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHH
Confidence 466667777777777777777777777755 36777778888888888888877777 256777777
Q ss_pred HHHhh
Q 034447 86 YQSDH 90 (94)
Q Consensus 86 l~~~~ 90 (94)
+.+|.
T Consensus 184 ~~aCv 188 (449)
T 1b89_A 184 CFACV 188 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77754
No 16
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.75 E-value=0.0012 Score=39.00 Aligned_cols=80 Identities=14% Similarity=0.100 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTP-DAVTYNTVY 86 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll 86 (94)
+...+..+-..+.+.|++++|...+++..... +.+...|..+...|...|++++|.+.+++..+.+..| +...+..+.
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la 148 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLG 148 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHH
Confidence 45566666677777777777777777665432 2255666777777777777777777777776633334 333444443
Q ss_pred HH
Q 034447 87 QS 88 (94)
Q Consensus 87 ~~ 88 (94)
..
T Consensus 149 ~~ 150 (252)
T 2ho1_A 149 LV 150 (252)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 17
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00069 Score=43.88 Aligned_cols=67 Identities=15% Similarity=0.051 Sum_probs=39.7
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
||...|..+..+|.+.|++++|...+++..+.. +-+..+|..+..++.+.|++++|...|+++.+.+
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 555666666666666666666666666655432 2244566666666666666666666666655543
No 18
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00076 Score=43.66 Aligned_cols=78 Identities=10% Similarity=0.047 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+...+...-..+.+.|++++|...|+++.... ||...|..+..++.+.|++++|+..+++..+.+ +.+...|..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 34556677788899999999999999998765 899999999999999999999999999998764 235566766666
Q ss_pred H
Q 034447 88 S 88 (94)
Q Consensus 88 ~ 88 (94)
+
T Consensus 82 ~ 82 (514)
T 2gw1_A 82 A 82 (514)
T ss_dssp H
T ss_pred H
Confidence 6
No 19
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.66 E-value=0.0012 Score=34.37 Aligned_cols=66 Identities=12% Similarity=0.188 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+...+..+...+.+.|++++|...+++..... +.+..++..+...+...|++++|...+++..+..
T Consensus 42 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 56788889999999999999999999987653 3467888999999999999999999999987654
No 20
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.65 E-value=0.0018 Score=36.04 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 103 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVA 103 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3444444444444455555554444443321 1233444444444444444444444444443
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.64 E-value=0.0018 Score=40.43 Aligned_cols=79 Identities=9% Similarity=0.047 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+...+..+-..|.+.|++++|...|++..+.. +.+..+|+.+...|.+.|++++|+..|++..+.. +.+..+|..+-.
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 289 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGI 289 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHH
Confidence 67889999999999999999999999887642 2368899999999999999999999999987753 224666666666
Q ss_pred H
Q 034447 88 S 88 (94)
Q Consensus 88 ~ 88 (94)
.
T Consensus 290 ~ 290 (365)
T 4eqf_A 290 S 290 (365)
T ss_dssp H
T ss_pred H
Confidence 5
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.61 E-value=0.002 Score=39.83 Aligned_cols=49 Identities=14% Similarity=0.298 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 23 GNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 23 g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|...|++..+
T Consensus 180 ~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp THHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444433 223444555555555555555555555555443
No 23
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.60 E-value=0.0027 Score=36.54 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 45 FICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 45 ~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
..+..+...+...|++++|+..+++.
T Consensus 114 ~~~~~l~~~~~~~~~~~~A~~~~~~~ 139 (225)
T 2vq2_A 114 IANLNKGICSAKQGQFGLAEAYLKRS 139 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333344444444444444444443
No 24
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.59 E-value=0.0014 Score=34.05 Aligned_cols=64 Identities=9% Similarity=0.053 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+...+..+-..|.+.|++++|...|++..+.. +-+...|..+-.+|...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56778888889999999999999999987653 22567889999999999999999999998764
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.58 E-value=0.0021 Score=39.12 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
...+..+-..+.+.|++++|...+++..+.. +.+...|..+...+...|++++|.+.+++..
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444444455555555555555555444321 1234445555555555555555555555543
No 26
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.57 E-value=0.0019 Score=34.25 Aligned_cols=81 Identities=14% Similarity=0.069 Sum_probs=63.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS-GLTPDAVTYNTVY 86 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll 86 (94)
+...+..+-..|.+.|++++|...|++..+.. +-+...+..+-.++.+.|++++|+..+++..+. .-.|+...|...|
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45678888889999999999999999987653 225778888999999999999999999987654 4445555665555
Q ss_pred HHh
Q 034447 87 QSD 89 (94)
Q Consensus 87 ~~~ 89 (94)
..+
T Consensus 105 ~~~ 107 (117)
T 3k9i_A 105 LFY 107 (117)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 27
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.57 E-value=0.003 Score=36.34 Aligned_cols=63 Identities=16% Similarity=-0.007 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRN-GKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~-g~~~~a~~~~~~m~~ 72 (94)
...+..+...+...|++++|...+++..... +.+..++..+...+... |++++|...+++..+
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 4455555555555666666666555554321 12444555555555555 666666666655554
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.56 E-value=0.003 Score=39.27 Aligned_cols=79 Identities=9% Similarity=0.051 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+..++..+-..|.+.|++++|...+++..... +.+..+|..+...+...|++++|+..|++..+.. +.+...+..+-.
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 293 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGI 293 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 57888999999999999999999999887642 2357889999999999999999999999987653 234566666655
Q ss_pred H
Q 034447 88 S 88 (94)
Q Consensus 88 ~ 88 (94)
.
T Consensus 294 ~ 294 (368)
T 1fch_A 294 S 294 (368)
T ss_dssp H
T ss_pred H
Confidence 5
No 29
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.51 E-value=0.0031 Score=40.29 Aligned_cols=67 Identities=16% Similarity=0.087 Sum_probs=59.4
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
.+...|..+...|.+.|++++|...|+++.+.+ +.+..+|..+...|.+.|++++|...|+++.+..
T Consensus 58 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 124 (450)
T 2y4t_A 58 DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 468889999999999999999999999998753 2368899999999999999999999999998754
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.49 E-value=0.0035 Score=36.89 Aligned_cols=78 Identities=10% Similarity=-0.053 Sum_probs=64.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+...+..+=..+.+.|++++|...|++..+.. .+...+..+-..+...|++++|+..|++..+..- -+...+..+-.
T Consensus 117 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~ 193 (217)
T 2pl2_A 117 YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYAS 193 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 56778888889999999999999999998877 7888899999999999999999999999877531 24555555554
Q ss_pred H
Q 034447 88 S 88 (94)
Q Consensus 88 ~ 88 (94)
.
T Consensus 194 ~ 194 (217)
T 2pl2_A 194 A 194 (217)
T ss_dssp H
T ss_pred H
Confidence 4
No 31
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.48 E-value=0.0034 Score=34.90 Aligned_cols=79 Identities=9% Similarity=0.030 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+...+..+...+.+.|++++|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 152 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAF 152 (186)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHH
Confidence 55667777777888888888888888776542 2356777777788888888888888888876653 224455555555
Q ss_pred H
Q 034447 88 S 88 (94)
Q Consensus 88 ~ 88 (94)
.
T Consensus 153 ~ 153 (186)
T 3as5_A 153 S 153 (186)
T ss_dssp H
T ss_pred H
Confidence 4
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.47 E-value=0.0054 Score=37.25 Aligned_cols=79 Identities=9% Similarity=-0.015 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+...+..+-..+.+.|++++|...+++..... +.+..+|..+...+...|++++|...+++..+..- .+...|..+..
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 248 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAV 248 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 67788889999999999999999999987643 23678899999999999999999999999877542 24566666655
Q ss_pred H
Q 034447 88 S 88 (94)
Q Consensus 88 ~ 88 (94)
.
T Consensus 249 ~ 249 (327)
T 3cv0_A 249 S 249 (327)
T ss_dssp H
T ss_pred H
Confidence 5
No 33
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0025 Score=32.83 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=56.7
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
++...+..+-..+.+.|++++|...|++..+.. +.+...|..+-.++.+.|++++|+..+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456778888889999999999999999887642 2367888899999999999999999999987653
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0016 Score=38.28 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
....|..+-..+.+.|++++|...|++..+.. .+...|..+...+...|++++|...+++..+.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 67 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ 67 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 45678888899999999999999999998877 78889999999999999999999999998653
No 35
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.39 E-value=0.0035 Score=32.93 Aligned_cols=64 Identities=9% Similarity=-0.043 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+...+..+-..|.+.|++++|...|++..... +.+...|..+-..|...|++++|...|++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67788888899999999999999999887643 23577888899999999999999999998765
No 36
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.36 E-value=0.0035 Score=32.87 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
...|..+-..+.+.|++++|...|++..... +.+...+..+...+...|++++|...+++..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 4567788888999999999999999887653 346788889999999999999999999998664
No 37
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.35 E-value=0.0044 Score=35.01 Aligned_cols=65 Identities=17% Similarity=0.117 Sum_probs=48.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...+..+-..|.+.|++++|...|++..+.. +-+..+|..+-..|.+.|++++|++.|++..+.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 106 YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 45566777777788888888888888776542 236677778888888888888888888887653
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.35 E-value=0.0068 Score=35.35 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=8.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNS 34 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~ 34 (94)
+..+...+.+.|++++|...+++
T Consensus 60 ~~~la~~~~~~~~~~~A~~~~~~ 82 (243)
T 2q7f_A 60 YINFANLLSSVNELERALAFYDK 82 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333333333444444333333
No 39
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.33 E-value=0.0041 Score=32.59 Aligned_cols=77 Identities=8% Similarity=0.121 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--Cch----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESD--KVN----VFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVT 81 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 81 (94)
+...+..+-..+.+.|++++|...+++.....- .++ ..+|..+...+...|++++|.+.|++..+.. |+...
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 114 (131)
T 1elr_A 37 NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDV 114 (131)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHH
Confidence 567788888899999999999999998875421 111 7788889999999999999999999988754 45554
Q ss_pred HHHHH
Q 034447 82 YNTVY 86 (94)
Q Consensus 82 ~~~ll 86 (94)
...+-
T Consensus 115 ~~~l~ 119 (131)
T 1elr_A 115 LKKCQ 119 (131)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 40
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.33 E-value=0.0044 Score=38.50 Aligned_cols=81 Identities=10% Similarity=0.025 Sum_probs=64.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---Cc-------
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGL---TP------- 77 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p------- 77 (94)
+...|..+-..+.+.|++++|...|++..+.. +.+...+..+...|.+.|++++|...|++..+..- .|
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 56789999999999999999999999987642 24678999999999999999999999999865321 11
Q ss_pred cHHHHHHHHHHh
Q 034447 78 DAVTYNTVYQSD 89 (94)
Q Consensus 78 ~~~~~~~ll~~~ 89 (94)
....|..+..++
T Consensus 329 ~~~~~~~l~~~~ 340 (368)
T 1fch_A 329 SENIWSTLRLAL 340 (368)
T ss_dssp CHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 156777776663
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.0073 Score=35.39 Aligned_cols=79 Identities=9% Similarity=-0.046 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+...+..+-..+.+.|++++|...+++..... +.+...|..+...+...|++++|...+++..+..- .+...|..+-.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~ 215 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKAT 215 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHH
Confidence 34556667777777788888888777776532 23566777777777777888888887777765431 23444544444
Q ss_pred H
Q 034447 88 S 88 (94)
Q Consensus 88 ~ 88 (94)
.
T Consensus 216 ~ 216 (258)
T 3uq3_A 216 A 216 (258)
T ss_dssp H
T ss_pred H
Confidence 4
No 42
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.33 E-value=0.0034 Score=39.16 Aligned_cols=60 Identities=5% Similarity=-0.102 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+..+-..+.+.|++++|...|++..... +.+..+|..+...|...|++++|+..|++..+
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444444445555555555555444321 12344444455555555555555555554443
No 43
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.31 E-value=0.0039 Score=31.81 Aligned_cols=79 Identities=6% Similarity=0.030 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLT-PDAVTYNTVYQ 87 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~ 87 (94)
...+..+-..+.+.|++++|...|++..+.. +.+...|..+-..+...|++++|...+++..+..-. .+...+..+-.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4455666677778888888888888776542 235667777888888888888888888887765311 13455555544
Q ss_pred H
Q 034447 88 S 88 (94)
Q Consensus 88 ~ 88 (94)
.
T Consensus 85 ~ 85 (112)
T 2kck_A 85 A 85 (112)
T ss_dssp H
T ss_pred H
Confidence 4
No 44
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.31 E-value=3.6e-05 Score=51.03 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
.+.+.++.+|.+.|+++++.++++ .|+..+|+.+-..|...|++++|...|.++
T Consensus 95 ~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 95 YVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp --------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 344444444444444444444442 144445555555555555555555555544
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.29 E-value=0.008 Score=35.03 Aligned_cols=79 Identities=9% Similarity=0.004 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+..- .+...+..+..
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 167 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGM 167 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHH
Confidence 56778888899999999999999999887643 24677888889999999999999999999876532 24555655555
Q ss_pred H
Q 034447 88 S 88 (94)
Q Consensus 88 ~ 88 (94)
.
T Consensus 168 ~ 168 (243)
T 2q7f_A 168 C 168 (243)
T ss_dssp H
T ss_pred H
Confidence 5
No 46
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.27 E-value=0.0059 Score=34.07 Aligned_cols=65 Identities=11% Similarity=0.014 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...|..+-..+.+.|++++|...|++..+.. +-+...|..+-.+|.+.|++++|+..|++..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44555555666666666666666666555432 125555666666666666666666666665543
No 47
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.25 E-value=0.0054 Score=32.07 Aligned_cols=63 Identities=11% Similarity=-0.006 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
...+..+-..+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3444444445555555555555555444321 12344445555555555555555555555443
No 48
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.24 E-value=0.0049 Score=31.44 Aligned_cols=66 Identities=15% Similarity=-0.044 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcC
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV--NVFICNLILSCLVRN-GKFESSLKLFDKIKQSG 74 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~t~~~li~~~~~~-g~~~~a~~~~~~m~~~g 74 (94)
+...|..+-..+.+.|++++|...+++..+.. +. +...+..+...+... |++++|.+.+++..+..
T Consensus 39 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 39 ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 56678888889999999999999999988653 22 578899999999999 99999999999987754
No 49
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.22 E-value=0.0071 Score=36.47 Aligned_cols=66 Identities=8% Similarity=0.146 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDE-------SDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...+..+-..+...|++++|..++++..+. .-+.....+..+...|...|++++|...+++..+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5678889999999999999999999998763 33456788999999999999999999999987653
No 50
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.21 E-value=0.006 Score=33.35 Aligned_cols=63 Identities=11% Similarity=0.014 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
..+..+-..+.+.|++++|...|++..... +.+...|..+-.++...|++++|+..|++..+.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444555666677777777776665432 125556666666666677777777777666553
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.20 E-value=0.0089 Score=33.70 Aligned_cols=66 Identities=12% Similarity=0.057 Sum_probs=53.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+...|..+=..|.+.|++++|...|++..+.. +-+...|..+...|.+.|++++|...+++.....
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~ 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 46678888888999999999999999887542 2267788888889999999999999988876654
No 52
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.19 E-value=0.0092 Score=33.61 Aligned_cols=65 Identities=12% Similarity=0.012 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...+..+=..+.+.|++++|...|++..... +-+...|..+-.+|...|++++|+..|++..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 34455666667777888888888888776542 226677777777888888888888888877654
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.17 E-value=0.0056 Score=36.39 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
...|..+-..+.+.|++++|...|++..... +.+..+|..+...|...|++++|...|++..+
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 105 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4445555555555555555555555554321 12344555555555555555555555555544
No 54
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.16 E-value=0.0071 Score=31.86 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+...|..+-..+.+.|++++|...|++..+.. +.+...+..+...+...|++++|+..+++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 78 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44555555555566666666666666554321 12445555555555556666666666655544
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.16 E-value=0.013 Score=34.80 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+...|..+-..|.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|...+++..+..
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 57888999999999999999999999988642 2367889999999999999999999999998753
No 56
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.16 E-value=0.0064 Score=31.22 Aligned_cols=63 Identities=17% Similarity=0.016 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
...+..+-..+.+.|++++|...+++..... +.+...+..+...+...|++++|.+.+++..+
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444444445555555555555555444321 11344445555555555555555555555443
No 57
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.14 E-value=0.0082 Score=32.08 Aligned_cols=66 Identities=11% Similarity=-0.003 Sum_probs=42.9
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
.+...|..+-..+.+.|++++|...|++..... +.+...|..+-..+...|++++|...+++..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 72 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL 72 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 355666666667777777777777777665432 124566666666777777777777777766554
No 58
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.14 E-value=0.01 Score=33.11 Aligned_cols=65 Identities=11% Similarity=-0.045 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...|..+-..|.+.|++++|...|++..+.. +-+...|..+-..|...|++++|+..|++..+.
T Consensus 44 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 44 NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 67788889999999999999999999987653 236888999999999999999999999998764
No 59
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.11 E-value=0.012 Score=33.78 Aligned_cols=67 Identities=7% Similarity=-0.083 Sum_probs=53.9
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
.|+...|..+-..|.+.|++++|...|++..... +.+...|..+-..|...|++++|+..|++..+.
T Consensus 34 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 34 DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 4577788888888888999999999888877543 336778888888888999999999998887763
No 60
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.0085 Score=31.79 Aligned_cols=64 Identities=16% Similarity=0.093 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+...|..+-.++.+.|++++|...+++..+.. +-+...|..+-.++...|++++|...|++..+
T Consensus 37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 37 DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 34455555555555566666655555554321 11344555555555555666666655555443
No 61
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.11 E-value=0.0084 Score=33.30 Aligned_cols=63 Identities=8% Similarity=0.063 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
...+..+-..+.+.|++++|...|++..... +.+...|..+-.+|...|++++|+..|++..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3344445555566666666666666554321 12455555555566666666666666666544
No 62
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.10 E-value=0.0074 Score=34.00 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+...|..+=.+|.+.|++++|...|++..+.. +-+...|..+-.+|.+.|++++|...|++..+..
T Consensus 69 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 69 NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 67788888899999999999999999987642 2257788889999999999999999999988754
No 63
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.10 E-value=0.0085 Score=31.55 Aligned_cols=66 Identities=11% Similarity=-0.009 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+...+..+-..+.+.|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.|++..+..
T Consensus 49 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 49 DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 66788888889999999999999999887642 2367888899999999999999999999987653
No 64
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.10 E-value=0.0093 Score=32.05 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=44.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCch----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVN----VFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
.+...+..+-..+.+.|++++|...|++..+. .|+ ...|..+...|...|++++|+..+++..+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 35666667777777777777777777776653 243 566666777777777777777777776554
No 65
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.09 E-value=0.01 Score=34.81 Aligned_cols=77 Identities=6% Similarity=-0.079 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 034447 8 SISSYSSYIKFLGKN-----------GNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 75 (94)
+...+..+-..+.+. |++++|...+++..+. .| +...|..+-..+...|++++|+..|++..+..
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 148 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE- 148 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-
Confidence 566778888888888 9999999999988764 35 57788888899999999999999999998877
Q ss_pred CccHHHHHHHHHH
Q 034447 76 TPDAVTYNTVYQS 88 (94)
Q Consensus 76 ~p~~~~~~~ll~~ 88 (94)
.+...+..+-..
T Consensus 149 -~~~~~~~~la~~ 160 (217)
T 2pl2_A 149 -DTPEIRSALAEL 160 (217)
T ss_dssp -CCHHHHHHHHHH
T ss_pred -cchHHHHHHHHH
Confidence 566666666555
No 66
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.08 E-value=0.0084 Score=31.28 Aligned_cols=81 Identities=9% Similarity=0.014 Sum_probs=63.4
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTV 85 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 85 (94)
..+...+..+-..+...|++++|...|++..... +.+...|..+...+...|++++|...+++..+..- .+...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 86 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHH
Confidence 3466788888899999999999999999887642 23678889999999999999999999999877532 234555544
Q ss_pred HHH
Q 034447 86 YQS 88 (94)
Q Consensus 86 l~~ 88 (94)
-..
T Consensus 87 ~~~ 89 (131)
T 2vyi_A 87 GLA 89 (131)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 67
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.06 E-value=0.011 Score=32.35 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...+..+-..+.+.|++++|...+++..... +.+...|..+...+...|++++|...|++..+.
T Consensus 46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 46 NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45566666777777777777777777766532 235666777777777777888888777776654
No 68
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.06 E-value=0.011 Score=32.00 Aligned_cols=62 Identities=15% Similarity=0.082 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
...|..+-.+|.+.|++++|...|++..+.. +.+...|..+-.++...|++++|++.|++..
T Consensus 47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 47 AILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444444444444444444443321 1133444444444444444444444444443
No 69
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.05 E-value=0.0097 Score=31.43 Aligned_cols=61 Identities=7% Similarity=-0.120 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCch----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVN----VFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
.+..+-..+.+.|++++|...|++..... |+ ...+..+-.++...|++++|...|++..+.
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55566677778888888888888776542 32 556677777888888888888888887765
No 70
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.04 E-value=0.015 Score=33.43 Aligned_cols=75 Identities=15% Similarity=0.036 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
...+..+-..+.+.|++++|...|++.. .|+...|..+-..|...|++++|+..|++..+.. +.+...|..+-..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 3445566677889999999999998774 5788999999999999999999999999987654 2245555555444
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.04 E-value=0.0099 Score=35.82 Aligned_cols=65 Identities=17% Similarity=0.248 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDE------SDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
....+..+-..+.+.|++++|...+++.... +-.| ...++..+...|...|++++|...+++..+
T Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566788888999999999999999988764 2234 566888999999999999999999999875
No 72
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.03 E-value=0.015 Score=35.33 Aligned_cols=65 Identities=9% Similarity=-0.088 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--------CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDES--------DKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+...+..+...+.+.|++++|...+++..+.. .+.+..+|..+...+...|++++|...+++..+
T Consensus 192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 264 (330)
T 3hym_B 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV 264 (330)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34555555555666666666666655554321 022344555555566666666666666655544
No 73
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.00 E-value=0.012 Score=31.63 Aligned_cols=65 Identities=9% Similarity=-0.084 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
...|..+-..|.+.|++++|...+++..... +.+...|..+-.++...|++++|...|++..+..
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 6778888889999999999999999887642 2367788888999999999999999999987653
No 74
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.00 E-value=0.016 Score=35.17 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..+..+-..|.+.|++++|...+++..... +.+...+..+...+...|++++|...+++..+
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 160 LPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344455566666666666666666665432 23556666667777777777777777766654
No 75
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.99 E-value=0.012 Score=31.41 Aligned_cols=64 Identities=9% Similarity=0.056 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+...|..+-..+.+.|++++|...+++..+.. +-+...|..+-..+...|++++|+..|++..+
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 42 VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56788888899999999999999999887643 23678899999999999999999999998765
No 76
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.97 E-value=0.013 Score=34.68 Aligned_cols=66 Identities=11% Similarity=0.061 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CC-CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDE------SD-KVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
....+..+-..|...|++++|...+++.... +- +....++..+-..|...|++++|...+++..+.
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 114 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4677888999999999999999999988754 22 336778999999999999999999999987654
No 77
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.96 E-value=0.0089 Score=29.54 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=60.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+...+..+-..+.+.|++++|...|++..+.. +.+...+..+-..+.+.|++++|...+++..+..- .+...+..+-.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 45677788888999999999999999887643 23677888899999999999999999999876531 23444444433
No 78
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.94 E-value=0.016 Score=32.12 Aligned_cols=65 Identities=9% Similarity=-0.036 Sum_probs=55.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...|..+-.+|.+.|++++|...|++..... +-+...|..+-.+|...|++++|...|++..+.
T Consensus 54 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 54 DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66778888888999999999999999987642 226678888899999999999999999997653
No 79
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.93 E-value=0.024 Score=37.56 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=62.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVY 86 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 86 (94)
|...|..++. +.+.|++++|..+|+.+.+. .+-+...|...+..+.+.|++++|.++|++..+.. |+...|...+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 6788998888 47899999999999999864 34478889999999999999999999999998764 6665555444
No 80
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.93 E-value=0.016 Score=35.68 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDES-DKV--NVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
..|..+...+.+.|++++|..+|+...... +.| +...|..++....+.|+.++|..++++..
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444444444444431 233 23344444444444444444444444443
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.90 E-value=0.011 Score=34.94 Aligned_cols=66 Identities=15% Similarity=0.251 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDE------SDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
....+..+-..|...|++++|...+++.... +-.| ...++..+...|...|++++|...+++..+.
T Consensus 126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4577888889999999999999999988764 2233 5778999999999999999999999988653
No 82
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.89 E-value=0.018 Score=31.93 Aligned_cols=77 Identities=3% Similarity=-0.115 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
..+-.+=..|.+.|++++|...|++..+.. +-+..+|..+-..|.+.|++++|+..|++..+..- -+...|..+-..
T Consensus 32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 108 (150)
T 4ga2_A 32 IKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP-TQKDLVLKIAEL 108 (150)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 344556677888899999999888877542 12677888888888888999999988888776431 134455544444
No 83
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.89 E-value=0.016 Score=32.16 Aligned_cols=65 Identities=11% Similarity=0.045 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...|..+-.+|.+.|++++|...+++..... +-+...|..+-.+|...|++++|...|++..+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34678888889999999999999999887653 336888999999999999999999999998765
No 84
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.88 E-value=0.013 Score=38.67 Aligned_cols=64 Identities=8% Similarity=-0.140 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CC-CCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITD-----ES-DKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~-~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..+++.+..+|...|++++|..++++... .| -.| -..+++.|-..|...|++++|+.++++-.+
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 47899999999999999999999988753 12 224 567799999999999999999999988643
No 85
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.86 E-value=0.0038 Score=33.01 Aligned_cols=67 Identities=9% Similarity=-0.081 Sum_probs=46.9
Q ss_pred hcCCHHHHHHHHHHHhhCC--CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 21 KNGNSLKALEIYNSITDES--DKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 21 ~~g~~~~a~~~~~~m~~~~--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
..|++++|...|++..+.+ -+-+...|..+-..|...|++++|+..|++..+..-. +...+..+-.+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 70 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMV 70 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 4688999999999988754 2346788899999999999999999999998776422 34444444443
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.81 E-value=0.027 Score=32.84 Aligned_cols=64 Identities=2% Similarity=-0.194 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+...+..+-..+.+.|++++|...|++..+.. +-+...|..+-..|...|++++|+..+++..+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 104 (228)
T 4i17_A 41 DSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIK 104 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33344444445555555555555555544321 11444555555555555555555555555444
No 87
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.80 E-value=0.011 Score=31.75 Aligned_cols=63 Identities=8% Similarity=-0.097 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
.+-.+-..+.+.|++++|...|++..+.. +-+...|..+-.++...|++++|+..|++..+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 81 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34455567778899999999998887542 2267778888888888999999999998877653
No 88
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.75 E-value=0.03 Score=36.47 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...|..+-..+.+.|++++|...+++..... +-+...|..+...+...|++++|...+++..+.
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34556666666667777777777776665432 123456666666677777777777777766554
No 89
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.019 Score=30.34 Aligned_cols=79 Identities=9% Similarity=-0.046 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+...|..+=..+.+.|++++|...|++..+.. +.+...|..+-.++.+.|++++|+..+++..+..- .+...|..+-.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 34567777788899999999999999887642 23688999999999999999999999999877542 23444444433
Q ss_pred H
Q 034447 88 S 88 (94)
Q Consensus 88 ~ 88 (94)
+
T Consensus 81 ~ 81 (126)
T 3upv_A 81 A 81 (126)
T ss_dssp H
T ss_pred H
Confidence 3
No 90
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.74 E-value=0.04 Score=33.70 Aligned_cols=61 Identities=18% Similarity=0.114 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.+..+-..+.+.|++++|...|++..... +.+...|..+...+...|++++|...+++..+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 65 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444444555555555554444321 11334444444444455555555555544443
No 91
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.73 E-value=0.022 Score=30.67 Aligned_cols=63 Identities=14% Similarity=0.086 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+..+..+=..+.+.|++++|...|++..+.. +-+...|+.+-.+|.+.|++++|+..+++..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3456666678889999999999999887642 23688899999999999999999999998764
No 92
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.72 E-value=0.03 Score=34.25 Aligned_cols=65 Identities=15% Similarity=0.028 Sum_probs=52.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...+..+-..+.+.|++++|...+++..... +.+..+|..+...+...|++++|...+++..+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56677788888888899999999888887642 346778888888888899999999988887764
No 93
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.71 E-value=0.018 Score=29.43 Aligned_cols=80 Identities=11% Similarity=0.016 Sum_probs=62.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVY 86 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 86 (94)
.+...+..+-..+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+..- .+...+..+-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a 79 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKA 79 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 345677888889999999999999999987642 23678888899999999999999999999877542 2455555554
Q ss_pred HH
Q 034447 87 QS 88 (94)
Q Consensus 87 ~~ 88 (94)
.+
T Consensus 80 ~~ 81 (118)
T 1elw_A 80 AA 81 (118)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 94
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.67 E-value=0.026 Score=30.71 Aligned_cols=65 Identities=11% Similarity=-0.018 Sum_probs=55.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...|..+-.+|.+.|++++|...|++..... +-+...|..+-.+|...|++++|...|++..+.
T Consensus 51 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 51 DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66778888889999999999999999987653 236677888889999999999999999997654
No 95
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.67 E-value=0.02 Score=37.32 Aligned_cols=63 Identities=13% Similarity=0.156 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
..|..+-..+.+.|++++|...|++..... +.+...|..+..+|.+.|++++|++.+++..+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 88 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEI 88 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344555555566666666666666655432 225556666666666666666666666665543
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.64 E-value=0.018 Score=32.54 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHH
Q 034447 26 LKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTP-DAVTYNTVYQS 88 (94)
Q Consensus 26 ~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~ 88 (94)
.++...+++..+. .| +...+..+-..+...|++++|...|++..+..-.+ +...+..+...
T Consensus 91 ~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~ 153 (176)
T 2r5s_A 91 SPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDI 153 (176)
T ss_dssp CHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHH
T ss_pred chHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHH
Confidence 3456666666543 24 46777777778888888888888888876654221 23445545444
No 97
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.62 E-value=0.025 Score=37.90 Aligned_cols=64 Identities=11% Similarity=-0.085 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CC-CCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITD-----ES-DKV-NVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~-~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
-..+++.|..+|...|++++|..++++... .| -.| -..+++.|-..|...|++++|+.++++-.
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 357899999999999999999999887653 11 123 56789999999999999999999998864
No 98
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.62 E-value=0.02 Score=28.89 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=47.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCchHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 16 IKFLGKNGNSLKALEIYNSITDESDKVNVF-ICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 16 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
-..+.+.|++++|...|++..+.. +-+.. .|..+-.+|...|++++|...|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 446778899999999999987642 22556 88888899999999999999999987654
No 99
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.62 E-value=0.024 Score=37.29 Aligned_cols=63 Identities=10% Similarity=-0.054 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----C-CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITD-----E-SDKV-NVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
..+++.+..+|...|++++|..++++... . .-.| -..+++.|-..|...|++++|+.++++..
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 57899999999999999999999987753 1 2224 56779999999999999999999998864
No 100
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.60 E-value=0.029 Score=34.56 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCch-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVN-VF-ICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+...|..+...+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4567888888888889999999999888763 453 32 78888888888888888888888877643
No 101
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.56 E-value=0.034 Score=36.64 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRN---------GKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~---------g~~~~a~~~~~~m~~ 72 (94)
...|..+-..|.+.|++++|...|++..+. .|+...+..+-..+... |++++|+..|++..+
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 207 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ 207 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH
Confidence 344444455555555555555555544433 24444444445555554 555555555555443
No 102
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.51 E-value=0.047 Score=31.76 Aligned_cols=81 Identities=14% Similarity=0.041 Sum_probs=62.4
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVY 86 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 86 (94)
.|...+...=..+.+.|++++|...|++..+..-+++...+..+-.++...|++++|+..+++..+..-. +...|..+-
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567778888889999999999999999887653366777777899999999999999999998865421 344454444
Q ss_pred HH
Q 034447 87 QS 88 (94)
Q Consensus 87 ~~ 88 (94)
..
T Consensus 84 ~~ 85 (228)
T 4i17_A 84 AA 85 (228)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 103
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.50 E-value=0.039 Score=32.70 Aligned_cols=62 Identities=6% Similarity=-0.025 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKV--NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.+..+-..|.+.|++++|...+++..+.+-.| ....|..+-..+...|++++|+..|++..+
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 102 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 45555556666666666666666655522111 122355555566666666666666665554
No 104
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.45 E-value=0.048 Score=31.20 Aligned_cols=63 Identities=17% Similarity=0.037 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
..|..+-.+|.+.|++++|...++...... +.+...|..+-.+|...|++++|+..|++..+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 677888888999999999999999887642 347788899999999999999999999998764
No 105
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.45 E-value=0.037 Score=29.77 Aligned_cols=75 Identities=5% Similarity=0.071 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCch----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDES--DKVN----VFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVT 81 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 81 (94)
+...|+.+-.+|.+.|++++|...+++..+.. ..++ ..+|..+=..+...|++++|++.|++-.+.. ||...
T Consensus 41 ~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~ 118 (127)
T 4gcn_A 41 NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF--RDPEL 118 (127)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCHHH
T ss_pred CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCHHH
Confidence 57788889999999999999999999876421 1111 2467777788899999999999999977643 55554
Q ss_pred HHH
Q 034447 82 YNT 84 (94)
Q Consensus 82 ~~~ 84 (94)
...
T Consensus 119 ~~~ 121 (127)
T 4gcn_A 119 VKK 121 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 106
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.43 E-value=0.061 Score=32.90 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
+...|..+-..|.+.|++++|...+++..+.. +-+...+..+-.++...|++++|...|++..
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 37 VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45556666666667777777777776665431 1255666666666777777777777666654
No 107
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.42 E-value=0.039 Score=33.70 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh----C-CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITD----E-SDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
...|+.+-..|.+.|++++|...|++..+ . +..+ ...+|..+-..|.+.|++++|+..+++..+
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34689999999999999999999998873 1 2333 344888999999999999999999988653
No 108
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.40 E-value=0.063 Score=34.79 Aligned_cols=69 Identities=10% Similarity=0.147 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccHHHH
Q 034447 13 SSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ-----SGLTPDAVTY 82 (94)
Q Consensus 13 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~ 82 (94)
..++.++.+.|+.+++.......... -+.+...|-.+|.++.+.|+..+|++.|++..+ -|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 35566777889999999888887643 234888999999999999999999999988754 3999988754
No 109
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.36 E-value=0.081 Score=33.56 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=56.5
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESD-KVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
.++..++..+-.++...|++++|.+++.+-...+- .-+...+..++..+.+.|+++.|.+.+++|.+.
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 35556666788889999999999999998755442 237888889999999999999999999999775
No 110
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.32 E-value=0.058 Score=33.92 Aligned_cols=78 Identities=14% Similarity=-0.064 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
...|..+-.+|.+.|++++|...+++..+.. +.+...|..+-.+|...|++++|+..|++..+..- -+...+..+-..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 5788889999999999999999999887653 23788999999999999999999999999876531 234444444433
No 111
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.29 E-value=0.071 Score=35.11 Aligned_cols=79 Identities=11% Similarity=-0.021 Sum_probs=64.3
Q ss_pred cHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNS-LKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVY 86 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 86 (94)
+...+..+-..+...|++ ++|...|++..+.. +-+...|..+-..|.+.|++++|...|++..+.. |+...+..+-
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 677788888889999999 99999999887642 2258899999999999999999999999988764 6656665555
Q ss_pred HHh
Q 034447 87 QSD 89 (94)
Q Consensus 87 ~~~ 89 (94)
..+
T Consensus 178 ~~~ 180 (474)
T 4abn_A 178 MVL 180 (474)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 112
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.28 E-value=0.077 Score=31.72 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=6.7
Q ss_pred cCCHHHHHHHHHHHHH
Q 034447 57 NGKFESSLKLFDKIKQ 72 (94)
Q Consensus 57 ~g~~~~a~~~~~~m~~ 72 (94)
.+++++|+..|++..+
T Consensus 127 ~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACD 142 (273)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHh
Confidence 4444444444444333
No 113
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.26 E-value=0.079 Score=31.68 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=32.3
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 034447 11 SYSSYIKFLGK----NGNSLKALEIYNSITDESDKVNVFICNLILSCLVR----NGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 11 ~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g 74 (94)
.+..+-..|.+ .+++++|...|++..+.+ +...+..+-..|.. .+++++|+..|++..+.+
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 108 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK 108 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC
Confidence 34444444555 555555555555555443 44445555555555 556666665555555443
No 114
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.25 E-value=0.12 Score=36.30 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+...|+.+=..|.+.|++++|...|++..+. .| +..+|+.+-..|.+.|++++|+..|++..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~ 71 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666666666666666666666665542 23 455666666666666666666666666554
No 115
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.25 E-value=0.059 Score=30.10 Aligned_cols=65 Identities=8% Similarity=0.057 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSC-LVRNGKF--ESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~-~~~~g~~--~~a~~~~~~m~~~ 73 (94)
+...|..+-..|...|++++|...|++..... +.+...+..+... +...|++ ++|...+++..+.
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~ 110 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 34555555566666666666666666554321 1134445555555 4555665 6666666665543
No 116
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.23 E-value=0.072 Score=34.15 Aligned_cols=65 Identities=9% Similarity=-0.073 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...|+.+-.+|.+.|++++|...+++..+.. +-+...|..+-.+|...|++++|+..|++..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45778888889999999999999999988643 236788999999999999999999999998765
No 117
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.22 E-value=0.08 Score=31.32 Aligned_cols=63 Identities=21% Similarity=0.342 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
..|..+-..+.+.|++++|...|++..+.. +-+...|..+-..|...|++++|+..+++..+.
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 346666666777777777777777665432 124456667777777777777777777766554
No 118
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.21 E-value=0.074 Score=30.87 Aligned_cols=72 Identities=19% Similarity=0.132 Sum_probs=56.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 15 YIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 15 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
+-..|.+.|++++|...|++..+.. +-+...|..+-..+...|++++|+..|++..+..- -+...|..+-..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~ 131 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 7778889999999999999887642 22788899999999999999999999999877531 234455444333
No 119
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.19 E-value=0.073 Score=30.55 Aligned_cols=78 Identities=14% Similarity=-0.005 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CCCc-hHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH-----c
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDE-----SDKV-NVFIC----NLILSCLVRNGKFESSLKLFDKIKQ-----S 73 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~~p-~~~t~----~~li~~~~~~g~~~~a~~~~~~m~~-----~ 73 (94)
...|+.+-.++.+.|++++|...+++-.+. .+.| +...| ...=.++...|++++|+..|++-.+ .
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 448899999999999999999999988763 2256 56677 7888889999999999999998743 4
Q ss_pred CCCccHHHHHHHH
Q 034447 74 GLTPDAVTYNTVY 86 (94)
Q Consensus 74 g~~p~~~~~~~ll 86 (94)
|+.+........+
T Consensus 137 ~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 137 GETPGKERMMEVA 149 (159)
T ss_dssp SCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666555444333
No 120
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.18 E-value=0.08 Score=33.57 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-----hHHHHHHHHHHH--Hh--cCCHHHHHHHHHHHHHcCCCcc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-----NVFICNLILSCL--VR--NGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~t~~~li~~~--~~--~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
+...+-.++..+.+.|+++.|.+.+++|.+. .| +-.+..-+..++ .. .++.++|+.+|+++.+.. |+
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~ 210 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PT 210 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CS
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CC
Confidence 6677888999999999999999999999864 46 355555566552 22 348999999999986553 55
Q ss_pred HHHHHHHHH
Q 034447 79 AVTYNTVYQ 87 (94)
Q Consensus 79 ~~~~~~ll~ 87 (94)
..+-..+++
T Consensus 211 ~~~~~lLln 219 (310)
T 3mv2_B 211 WKTQLGLLN 219 (310)
T ss_dssp HHHHHHHHH
T ss_pred cccHHHHHH
Confidence 333333333
No 121
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.18 E-value=0.11 Score=32.61 Aligned_cols=78 Identities=12% Similarity=0.033 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCch----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVN----------------VFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~----------------~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
+...|..+=..|.+.|++++|...|++..... |+ ...|..+-.+|.+.|++++|+..+++..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677788888999999999999999887643 33 5899999999999999999999999987
Q ss_pred HcCCCccHHHHHHHHHH
Q 034447 72 QSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 72 ~~g~~p~~~~~~~ll~~ 88 (94)
+..- .+...|..+-.+
T Consensus 224 ~~~p-~~~~a~~~lg~~ 239 (336)
T 1p5q_A 224 ELDS-NNEKGLSRRGEA 239 (336)
T ss_dssp HHCT-TCHHHHHHHHHH
T ss_pred HhCC-CcHHHHHHHHHH
Confidence 7542 245555544444
No 122
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.17 E-value=0.074 Score=35.20 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=56.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...|..+-.+|.+.|++++|...+++..+.. +-+...|..+-.+|.+.|++++|++.|++..+.
T Consensus 39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 39 NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57788889999999999999999999888752 236788899999999999999999999998764
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.15 E-value=0.061 Score=29.29 Aligned_cols=78 Identities=10% Similarity=-0.011 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
...+..+-..+.+.|++++|...|++..... +.+...+..+...+...|++++|+..+++..+..- .+...|..+-..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4567777788889999999999999887642 23678889999999999999999999999876532 244555444444
No 124
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.14 E-value=0.099 Score=32.93 Aligned_cols=63 Identities=10% Similarity=-0.040 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDE----SD-KVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.+++.+-..|.+.|++++|...+++..+. +- +....++..+-..|.+.|++++|...+++..+
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46777788888889999999988877651 33 44677788888889999999999998887654
No 125
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.08 E-value=0.2 Score=35.12 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
...|+.+=.+|.+.|++++|.+.|++..+. .| +...|+.+-..|.+.|++++|+..|++..+
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555555555544432 12 344555555555555555555555555444
No 126
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.07 E-value=0.13 Score=33.49 Aligned_cols=75 Identities=12% Similarity=-0.024 Sum_probs=60.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNT 84 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 84 (94)
..+...|.++-..+.-.|++++|...+++....+ |+...|..+=..+.-.|++++|...|++-..-. |...||..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHHH
Confidence 4577778777777777799999999999998875 888888777788889999999999998876643 55556543
No 127
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.03 E-value=0.098 Score=30.65 Aligned_cols=64 Identities=8% Similarity=0.033 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDES-DKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
..+-.+-..+.+.|++++|...|++..... -.| ....+..+..+|.+.|++++|+..|++..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 344555667888999999999999998642 112 2457777889999999999999999998764
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.00 E-value=0.082 Score=29.51 Aligned_cols=66 Identities=8% Similarity=0.132 Sum_probs=53.4
Q ss_pred cHHHHHHHHHH-HHhcCCH--HHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 8 SISSYSSYIKF-LGKNGNS--LKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 8 ~~~~~~~ll~~-~~~~g~~--~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+...+..+-.. +.+.|++ ++|...+++..... +-+...+..+...|...|++++|...|++..+..
T Consensus 77 ~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 77 NAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 45566666667 7788998 99999999887653 2357788888999999999999999999987653
No 129
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.00 E-value=0.19 Score=33.60 Aligned_cols=62 Identities=3% Similarity=-0.146 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
...|..+-..+.+.|++++|...+++..+.. +-+...|..+-..|...|++++|.+.+++..
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 84 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444444455555555444444321 1133444444444444444444444444443
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.00 E-value=0.072 Score=30.06 Aligned_cols=65 Identities=8% Similarity=-0.019 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDE----SDK--VNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~--p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
....++.+-..+...|++++|...+++.... +-. .....+..+-..+...|++++|...+++..+
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566777888888999999999988876542 212 2355677888888999999999999988653
No 131
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.98 E-value=0.19 Score=33.56 Aligned_cols=79 Identities=9% Similarity=0.005 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+...|..+-..|.+.|++++|...+++..+.. +-+...|..+-..|.+.|++++|.+.+++..+..- .+...+..+..
T Consensus 56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 133 (568)
T 2vsy_A 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLN 133 (568)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 56778888888999999999999999887642 23577888888999999999999999998876532 23455555544
Q ss_pred H
Q 034447 88 S 88 (94)
Q Consensus 88 ~ 88 (94)
.
T Consensus 134 ~ 134 (568)
T 2vsy_A 134 W 134 (568)
T ss_dssp H
T ss_pred H
Confidence 4
No 132
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.97 E-value=0.12 Score=31.55 Aligned_cols=66 Identities=11% Similarity=0.085 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHhhC----CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 9 ISSYSSYIKFLGKN-GNSLKALEIYNSITDE----SDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 9 ~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
..+|+.+-..|.+. |++++|...|++-.+. +-.+ ...+++.+-..+.+.|++++|+..|++..+..
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45778888888886 9999999999987642 1111 14578888999999999999999999988754
No 133
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.97 E-value=0.045 Score=29.34 Aligned_cols=64 Identities=14% Similarity=0.040 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDE----SDK-VNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..++..+-..+...|++++|...+++.... +-. .-..++..+-..+...|++++|...+++..+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777788888999999999998877542 111 1124778888888999999999999988654
No 134
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.95 E-value=0.067 Score=32.74 Aligned_cols=64 Identities=9% Similarity=0.089 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchH------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNV------FICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..+|+.+-..+.+.|++++|...|++.....-.... ..|..+..++...|++++|+..|++..+
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356888889999999999999999998865432221 2677778889999999999999998764
No 135
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=95.89 E-value=0.079 Score=28.43 Aligned_cols=78 Identities=15% Similarity=0.091 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
...+...=..|.+.|++++|...|++..+.. +-+...|..+-.+|.+.|++++|+..|++..+.+- .+...|..+-.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHH
Confidence 3556666678889999999999999887542 23788999999999999999999999999876532 234455444443
No 136
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=95.84 E-value=0.21 Score=33.06 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVN--VFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...|..+...+.+.|++++|..+|++..+. .|+ ...|......+.+.|+.++|.++|++..+.
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5677888888888888888888888888764 343 347777777777788888888888877654
No 137
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.83 E-value=0.096 Score=28.87 Aligned_cols=77 Identities=14% Similarity=0.052 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCccHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKL-FDKIKQSGLTPDAVTYNTV 85 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~p~~~~~~~l 85 (94)
+...|..+-..|.+.|++++|...|++..+. .| +...|..+-..|.+.|+.+++.+. +++..+-. +-+...|...
T Consensus 64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~ 140 (150)
T 4ga2_A 64 DPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLK 140 (150)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 6788899999999999999999999988764 35 578899999999999998876665 57765532 1245555544
Q ss_pred HH
Q 034447 86 YQ 87 (94)
Q Consensus 86 l~ 87 (94)
-.
T Consensus 141 ~~ 142 (150)
T 4ga2_A 141 EQ 142 (150)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.76 E-value=0.16 Score=30.99 Aligned_cols=79 Identities=10% Similarity=-0.052 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+...+..+-..+.+.|++++|...|++..... +-+...|..+-.+|.+.|++++|+..+++..+..- -+...+..+-.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 55677788888999999999999999887642 22788899999999999999999999999876532 24445544444
Q ss_pred H
Q 034447 88 S 88 (94)
Q Consensus 88 ~ 88 (94)
+
T Consensus 81 ~ 81 (281)
T 2c2l_A 81 C 81 (281)
T ss_dssp H
T ss_pred H
Confidence 4
No 139
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.74 E-value=0.092 Score=28.06 Aligned_cols=63 Identities=16% Similarity=0.064 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDE----SDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..+..+-..+...|++++|...+++.... +-.+ ....+..+-..+...|++++|...+++..+
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 47778888899999999999999887532 1111 256788888889999999999999988654
No 140
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.74 E-value=0.17 Score=31.19 Aligned_cols=63 Identities=6% Similarity=-0.020 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCchH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITD----ESDKVNV-FICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
..+++.+-..|.+.|++++|...|++... .+..++. ..+..+...+...|++++|...|++..
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 35677777888888888888888887764 2222222 366666677777788888888888876
No 141
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.73 E-value=0.14 Score=30.82 Aligned_cols=61 Identities=8% Similarity=0.087 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-ch--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDK-VN--VFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
.+...-..+.+.|++++|...|++..+..-. |. ...+..+...+...|++++|...+++..
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 70 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455666778888888888887764211 11 4677777888888888888888887754
No 142
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.64 E-value=0.17 Score=32.50 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--------CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDE--------SDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.+..||.+=..+...|+.++|.+.|++-.+. .-+-...+|+.+-..|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~ 122 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567899888999999999999999875431 1123568899999999999999999999988653
No 143
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.64 E-value=0.14 Score=32.20 Aligned_cols=64 Identities=9% Similarity=0.113 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITD----ESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..+++.+=..|.+.|++++|...+++... .+-+....++..+-..+.+.|++++|...+++..+
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34667777788888999999998887765 13333577888888889999999999999988765
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.63 E-value=0.18 Score=30.66 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITD----ESDKV--NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..+|+.+-..|...|++++|...|++... .+-.+ ...+|+.+-..|.+.|++++|+..+++..+
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45888899999999999999999998762 22222 236888999999999999999999988654
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.62 E-value=0.13 Score=28.95 Aligned_cols=65 Identities=6% Similarity=-0.011 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITD----ESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
....++.+-..+...|++++|...+++... .+..| ...++..+-..+...|++++|...+++..+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 94 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567788888899999999999999988764 22333 567788888899999999999999988654
No 146
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=95.60 E-value=0.11 Score=31.81 Aligned_cols=62 Identities=16% Similarity=0.062 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
..+..+-..+.+.|++++|...|++.... .| +...+..+...+.+.|++++|...+++....
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 44555666778889999999999988754 24 6778888899999999999999999887554
No 147
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.56 E-value=0.11 Score=27.63 Aligned_cols=64 Identities=9% Similarity=-0.030 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...|..+=.++.+.|++++|...|++..+.. | +...+..+-..+...|++++|+..+++..+.
T Consensus 50 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 50 REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66778888888999999999999999887642 4 6778888999999999999999999998753
No 148
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.52 E-value=0.23 Score=31.30 Aligned_cols=64 Identities=16% Similarity=0.045 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDE----SDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..+++.+=..|...|++++|...|++..+. +-.+ ...+++.+-..|...|++++|+..+++..+
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567788888899999999999999877542 2222 345788888899999999999999998765
No 149
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=95.47 E-value=0.2 Score=30.50 Aligned_cols=62 Identities=15% Similarity=0.221 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-ch----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDK-VN----VFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.|..+-..+...+++++|...+++....... ++ ..+|+.+-..|...|++++|+..|++..+
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444666666778999999999888763222 22 44688888899999999999999988763
No 150
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.45 E-value=0.18 Score=33.14 Aligned_cols=64 Identities=16% Similarity=0.042 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
...|..+-.+|.+.|++++|...+++..+.. +-+...|..+-.+|...|++++|+..|++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5778888899999999999999999887643 237888999999999999999999999998764
No 151
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.44 E-value=0.11 Score=27.09 Aligned_cols=59 Identities=15% Similarity=0.024 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCch-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKVN-V---FICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~---~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
.+-..+.+.|++++|...|+...+.. |+ . ..+..+-.++...|++++|...|++..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~ 69 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY 69 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 34456778999999999999987642 32 2 477778888999999999999999987753
No 152
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.38 E-value=0.27 Score=30.94 Aligned_cols=64 Identities=9% Similarity=0.045 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDE----SDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..+++.+-..|...|++++|...+++..+. +-.+ ...++..+-..|...|++++|+..+++..+
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 457778888899999999999999877532 2112 335788889999999999999999998765
No 153
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.37 E-value=0.1 Score=31.41 Aligned_cols=65 Identities=17% Similarity=0.076 Sum_probs=45.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCC-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITD----ESDK-VNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
....+..+-..+.+.|++++|...+++... .+-. ....++..+...+...|++++|...+++..+
T Consensus 222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 356677777788888888888877776542 2211 2377777778888888888888887777643
No 154
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.34 E-value=0.29 Score=31.59 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGK-FESSLKLFDKIKQ 72 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~-~~~a~~~~~~m~~ 72 (94)
.|+.+-..+.+.|++++|...+++.... .| +...|+.+-..+...|+ +++|+..|++..+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 3444444444445555555555544432 12 34444444444445553 5555555544443
No 155
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.27 E-value=0.23 Score=29.52 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-h---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-N---VFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...+-.+-..+.+.|++++|...|++..... | + ...+..+-.+|.+.|++++|+..|++..+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 81 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI 81 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 55566666777889999999999999998642 3 2 677888889999999999999999998875
No 156
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.25 E-value=0.19 Score=29.38 Aligned_cols=60 Identities=8% Similarity=0.040 Sum_probs=47.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC-CCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 15 YIKFLGKNGNSLKALEIYNSITDES-DKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 15 ll~~~~~~g~~~~a~~~~~~m~~~~-~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+-..|.+.|++++|...|++..+.- -.| ....+..+..++.+.|+.++|.+.++.+...+
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 3456778999999999999987642 111 23578889999999999999999999988764
No 157
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.24 E-value=0.13 Score=32.31 Aligned_cols=61 Identities=16% Similarity=-0.001 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.|+.+-.+|.+.|++++|...+++..+.. +-+...|..+-.+|...|++++|+..|++..+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67788888999999999999999887642 23788999999999999999999999998754
No 158
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=95.19 E-value=0.2 Score=28.33 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=54.3
Q ss_pred HHHHhcC-CHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 17 KFLGKNG-NSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 17 ~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
..+-+.. +..+..+-++.+....+-|+.....+.+++|-+..++.-|.++|+-.+.+- .+....|.-+++-
T Consensus 60 ~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 60 TYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 3333444 566777778888888899999999999999999999999999999986542 2334456666653
No 159
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.18 E-value=0.13 Score=32.11 Aligned_cols=62 Identities=13% Similarity=0.054 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDE----SDKV-NVFICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
..++..+-..|.+.|++++|...+++.... +-.+ ...++..+-..|...|++++|...+++.
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555566666666666666666655421 1111 1445556666666666666666666654
No 160
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.07 E-value=0.13 Score=32.34 Aligned_cols=63 Identities=14% Similarity=0.020 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDE----SD-KVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..|..+-..|...|++++|...+++.... +- +.....+..+-..|...|++++|...+++..+
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 154 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT 154 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46778888888999999999998877542 21 23567788888889999999999999888654
No 161
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.03 E-value=0.29 Score=30.77 Aligned_cols=63 Identities=6% Similarity=0.100 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-ch--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDK-VN--VFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..+..+-..+.+.|++++|...|++..+..-. +. ...|..+-..|...|++++|+..+++..+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445566778899999999999998875321 11 25788889999999999999999988754
No 162
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.84 E-value=0.31 Score=28.89 Aligned_cols=65 Identities=11% Similarity=0.014 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCchHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHc
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDES--DKVNVFICNLILSCLVR--------NGKFESSLKLFDKIKQS 73 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~t~~~li~~~~~--------~g~~~~a~~~~~~m~~~ 73 (94)
...+..+-..|.+.|++++|...|+...+.. -+.....+..+-.++.. .|++++|+..|++..+.
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 5667778888999999999999999988641 11235567777778888 99999999999998765
No 163
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=94.83 E-value=0.17 Score=31.16 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDE----SDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..+++.+-..|.+ |++++|...|++-... +-.+ -..+++.+-..|.+.|++++|+..|++..+
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567777777777 9999999988876532 1111 246788888889999999999999988765
No 164
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=94.76 E-value=0.24 Score=27.22 Aligned_cols=80 Identities=10% Similarity=0.130 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--------C---------CCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDE--------S---------DKVNVFICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------~---------~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
....+...=..+.+.|++++|...|++.... . -+-+...|..+-.+|.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456667777888999999999999987653 0 1224578888999999999999999999998
Q ss_pred HHcCCCccHHHHHHHHHH
Q 034447 71 KQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 71 ~~~g~~p~~~~~~~ll~~ 88 (94)
.+.. +.+...|..+-.+
T Consensus 90 l~~~-p~~~~a~~~~g~~ 106 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKA 106 (162)
T ss_dssp HHHS-TTCHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHH
Confidence 7753 2244555444444
No 165
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.60 E-value=0.48 Score=32.73 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+...+..+-..+.+.|++++|...|++..+.. +-+...|..+-..+...|++++|+..|++..+..
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 497 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF 497 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 55677788888999999999999999887642 2267788888889999999999999999987653
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.59 E-value=0.57 Score=30.72 Aligned_cols=77 Identities=10% Similarity=0.039 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCch----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVN----------------VFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~----------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
...|..+=..+.+.|++++|...|++..... |+ ...|..+-.+|.+.|++++|+..+++..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4567777788899999999999999887531 32 68899999999999999999999999877
Q ss_pred cCCCccHHHHHHHHHH
Q 034447 73 SGLTPDAVTYNTVYQS 88 (94)
Q Consensus 73 ~g~~p~~~~~~~ll~~ 88 (94)
..- .+...|..+-.+
T Consensus 346 ~~p-~~~~a~~~~g~a 360 (457)
T 1kt0_A 346 LDS-ANEKGLYRRGEA 360 (457)
T ss_dssp HST-TCHHHHHHHHHH
T ss_pred cCC-ccHHHHHHHHHH
Confidence 532 244455444433
No 167
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=94.56 E-value=0.54 Score=30.32 Aligned_cols=78 Identities=8% Similarity=-0.006 Sum_probs=62.9
Q ss_pred cHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGN-SLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTV 85 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 85 (94)
+...|+.+-..+.+.|+ +++|...|++..... | +...|..+-..+...|++++|+..|++..+..- -+...|..+
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~l 206 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHR 206 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHH
Confidence 56788888889999997 999999999998643 4 788899999999999999999999999987542 245555544
Q ss_pred HHH
Q 034447 86 YQS 88 (94)
Q Consensus 86 l~~ 88 (94)
-.+
T Consensus 207 g~~ 209 (382)
T 2h6f_A 207 QWV 209 (382)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=94.52 E-value=0.33 Score=27.63 Aligned_cols=79 Identities=9% Similarity=0.017 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCc--------------hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDES-DKV--------------NVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p--------------~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
...+..+-..+.+.|++++|...|++..... -.| ....|..+-.+|.+.|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3456667778889999999999999887531 112 1378888899999999999999999998775
Q ss_pred CCCccHHHHHHHHHH
Q 034447 74 GLTPDAVTYNTVYQS 88 (94)
Q Consensus 74 g~~p~~~~~~~ll~~ 88 (94)
.- .+...|..+-.+
T Consensus 118 ~p-~~~~~~~~lg~~ 131 (198)
T 2fbn_A 118 DK-NNVKALYKLGVA 131 (198)
T ss_dssp ST-TCHHHHHHHHHH
T ss_pred Cc-ccHHHHHHHHHH
Confidence 31 244444444333
No 169
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.49 E-value=0.22 Score=25.57 Aligned_cols=66 Identities=9% Similarity=-0.004 Sum_probs=49.7
Q ss_pred ccHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 7 TSISSYSSYIKFLGKNGN---SLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
.|...+..+-.++.-.++ .++|..++++-... .| +......+-..+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 355556665566654433 79999999988764 35 66777777788899999999999999998764
No 170
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=94.47 E-value=0.48 Score=29.41 Aligned_cols=67 Identities=9% Similarity=0.084 Sum_probs=50.4
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-ch--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDK-VN--VFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.+....+...-..+.+.|++++|...|++.....-. |. ...|..+...+...|++++|...+++..+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 75 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445566667777788899999999999988765211 11 46788888889999999999998887643
No 171
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.44 E-value=0.56 Score=29.99 Aligned_cols=78 Identities=9% Similarity=0.007 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC--------------CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDE--------------SDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------------~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
..+..+-..+.+.|++++|...|++..+. ...| +...|..+-.+|.+.|++++|+..+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45677778888999999999999987651 0223 67888999999999999999999999988753
Q ss_pred CCccHHHHHHHHHH
Q 034447 75 LTPDAVTYNTVYQS 88 (94)
Q Consensus 75 ~~p~~~~~~~ll~~ 88 (94)
- -+...|..+-.+
T Consensus 304 p-~~~~a~~~lg~~ 316 (370)
T 1ihg_A 304 P-SNTKALYRRAQG 316 (370)
T ss_dssp T-TCHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHH
Confidence 2 244555444444
No 172
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=94.43 E-value=0.34 Score=29.43 Aligned_cols=61 Identities=15% Similarity=-0.027 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCc-hHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDES----DKV-NVFICNLILSCLVRNGKFESS-LKLFDKI 70 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~----~~p-~~~t~~~li~~~~~~g~~~~a-~~~~~~m 70 (94)
.+|+.+-..|.+.|++++|...+++..+.. ... -..+|..+-..|.+.|+.++| ...+++.
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 688889999999999999999999876421 111 267888889999999999999 7767664
No 173
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.41 E-value=0.51 Score=31.03 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCC---CC----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 13 SSYIKFLGKNGNSLKALEIYNSITDES---DK----VNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 13 ~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~----p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
...+.-+.+.|++++|..++++..+.- +. .-..+++.+...|...|++++|+.++++..+
T Consensus 291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 344566777899999999999886421 11 2467899999999999999999999998753
No 174
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.32 E-value=0.25 Score=25.56 Aligned_cols=66 Identities=11% Similarity=0.068 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDE------SDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...+-.+=..+.+.|+++.|..-|++-.+. .-.+....+..+-.++.+.|+++.|+..+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4556667778888999999999988876542 12356788899999999999999999999998763
No 175
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.30 E-value=0.38 Score=27.48 Aligned_cols=68 Identities=21% Similarity=0.145 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLT 76 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 76 (94)
+...++..|+...+.|.-++..++..+... +-+|+....-.+..+|.+-|+..++.+++.+.-++|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 345677889999999999999999999643 34567777788899999999999999999999999975
No 176
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=93.93 E-value=0.41 Score=29.23 Aligned_cols=70 Identities=17% Similarity=0.119 Sum_probs=50.2
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHh
Q 034447 19 LGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLT-PDAVTYNTVYQSD 89 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~ 89 (94)
+.+.+..++|...+++..... +.+...+..+-..+...|++++|+..|++..+..-. .+...+..+...+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 556777788888887776542 236788888889999999999999999998775421 2345566666653
No 177
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=93.89 E-value=0.49 Score=27.30 Aligned_cols=72 Identities=6% Similarity=0.115 Sum_probs=52.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNL----------------ILSCLVRNGKFESSLKLFDKIKQSGLT 76 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~----------------li~~~~~~g~~~~a~~~~~~m~~~g~~ 76 (94)
..-..+.+.|++++|...|++.... .| +...|.. +-..|.+.|++++|+..|++..+..-
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p- 85 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP- 85 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-
Confidence 3444567899999999999988764 25 4455666 88889999999999999999877541
Q ss_pred ccHHHHHHHHHH
Q 034447 77 PDAVTYNTVYQS 88 (94)
Q Consensus 77 p~~~~~~~ll~~ 88 (94)
-+...|..+-..
T Consensus 86 ~~~~~~~~lg~~ 97 (208)
T 3urz_A 86 NNVDCLEACAEM 97 (208)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 244555444443
No 178
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.65 E-value=0.41 Score=25.63 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=57.7
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 13 SSYIKFLGKNG-NSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 13 ~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
.-....+-+.. +..+..+-++.+....+-|+.....+.+++|-+..++.-|.++|+-.+.+- .+....|..+++-
T Consensus 13 aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 13 ARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 33444455555 678888889999999999999999999999999999999999999886542 2233456666653
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=93.60 E-value=0.74 Score=30.45 Aligned_cols=69 Identities=12% Similarity=-0.010 Sum_probs=53.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 18 FLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 18 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
.+.+.|++++|.+.+++..+.. +-+...|..+-.+|.+.|++++|+..+++..+..- -+...|..+-.+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~ 83 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAAS 83 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4567899999999999887642 23688999999999999999999999999887632 245555555444
No 180
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.40 E-value=0.72 Score=35.43 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+..+|..+=.++-+.|++++|.+.|.+- -|...|.-++.++.+.|++++|.+++..-++..
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 4567788888888899999999998653 367788889999999999999999998765544
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=93.29 E-value=1.1 Score=30.00 Aligned_cols=54 Identities=6% Similarity=0.065 Sum_probs=42.7
Q ss_pred HHhcCCHHHHHHHHHHHhhC---CC---Cc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 19 LGKNGNSLKALEIYNSITDE---SD---KV-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~~~---~~---~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+-..|++++|..++++..+. -+ .| -..+++.|...|...|++++|+.++++..+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 379 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD 379 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45679999999998877532 11 23 567899999999999999999999988643
No 182
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=92.94 E-value=0.65 Score=25.88 Aligned_cols=63 Identities=11% Similarity=0.048 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
+...+..+-..+.+.|++++|...|++..+..=.+ +...+..+...+...|+.++|...|++.
T Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 34555566666666666676666666665442111 2445666666666666666666666654
No 183
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=92.92 E-value=0.76 Score=26.63 Aligned_cols=64 Identities=13% Similarity=0.071 Sum_probs=45.4
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcC
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNG----KFESSLKLFDKIKQSG 74 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g----~~~~a~~~~~~m~~~g 74 (94)
-|...+..+=..|...+++++|...|++-.+.| +...+..|-..|.. + +.++|+..|++-.+.|
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g 83 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG 83 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC
Confidence 355566666667777888888888888887765 44555555555655 5 7888888888887665
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.89 E-value=1.1 Score=28.34 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDE----SD-KVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..++..+-..|...|++++|..++++.... +- +-...+|..+.+.|...|++++|..++++...
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 456778888999999999999999877532 11 22466899999999999999999999988653
No 185
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=92.89 E-value=0.93 Score=28.19 Aligned_cols=61 Identities=10% Similarity=-0.044 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC--c-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNSITDE----SDK--V-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~--p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
++.+-..+...|++++|...+++.... +-. | ....+..+-..+...|++++|...+++..+
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 163 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455566677788888888887766532 221 2 344566667777888888888888877654
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=92.87 E-value=1.1 Score=28.16 Aligned_cols=77 Identities=10% Similarity=0.050 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHH------------------HHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVF------------------ICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------------------t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
...+..+=..+.+.|++++|...|++.... .|+.. .|..+-.+|.+.|++++|+..+++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566666777889999999999987643 25433 7888899999999999999999998
Q ss_pred HHcCCCccHHHHHHHHHH
Q 034447 71 KQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 71 ~~~g~~p~~~~~~~ll~~ 88 (94)
.+..- .+...|..+-.+
T Consensus 257 l~~~p-~~~~a~~~lg~a 273 (338)
T 2if4_A 257 LTEEE-KNPKALFRRGKA 273 (338)
T ss_dssp HHHCT-TCHHHHHHHHHH
T ss_pred HHhCC-CCHHHHHHHHHH
Confidence 76531 245555555444
No 187
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=92.85 E-value=0.55 Score=30.99 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHHhh---CCC---Cc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 22 NGNSLKALEIYNSITD---ESD---KV-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~---~~~---~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
.|++++|..++++..+ .-+ .| -..+++.|...|...|++++|+.++++..+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 368 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 4788999999987653 112 23 457899999999999999999999998753
No 188
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=92.75 E-value=1.1 Score=27.89 Aligned_cols=64 Identities=8% Similarity=0.073 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSITDE----SDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
...+..+-..+...|++++|...+++.... +-.....+|..+-..+...|++++|...+++...
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666777889999999999999987642 2112356788888889999999999999998764
No 189
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=92.63 E-value=0.75 Score=26.29 Aligned_cols=77 Identities=10% Similarity=0.075 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhc-----------CCHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGN----------SLKALEIYNSITDESDKV-NVFICNLILSCLVRN-----------GKFESSLK 65 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~-----------g~~~~a~~ 65 (94)
+...|+.+=.++.+.++ +++|...|++-.+. .| +...|..+=.+|... |++++|++
T Consensus 35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~ 112 (158)
T 1zu2_A 35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQ 112 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHH
Confidence 55666666666666655 45999999988764 35 667888888888876 48999999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHH
Q 034447 66 LFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 66 ~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
.|++..+. .|+...|...++.
T Consensus 113 ~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 113 FFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHh--CCCCHHHHHHHHH
Confidence 99998775 3766677666554
No 190
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.48 E-value=0.84 Score=25.97 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=47.4
Q ss_pred CccHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 6 KTSISSYSSYIKFLGKNG---NSLKALEIYNSITDESDKV--NVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
.++..+--.+--++++.. +.+++..++++..+.. .| +.-.+=.+--+|.+.|++++|.+.+++..+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345555555666777777 6779999999988765 23 2222333445669999999999999998764
No 191
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=92.33 E-value=1.3 Score=27.72 Aligned_cols=62 Identities=8% Similarity=-0.058 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNSITDESDKV--NVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+..+=.++.+.|++++|...|++-......| ........-.++.+.|+.++|..+|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3344445556666666666666665433313 2223444445556666666666666666554
No 192
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.19 E-value=0.61 Score=24.97 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=37.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILS 52 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 52 (94)
.|+.....+.|++|-+..++..|.++|+..+... .....+|..++.
T Consensus 42 VP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 42 VPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 6899999999999999999999999999988532 223446777665
No 193
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=91.93 E-value=2.3 Score=29.78 Aligned_cols=80 Identities=13% Similarity=0.024 Sum_probs=63.6
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCccHHHH
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGK---FESSLKLFDKIKQSG-LTPDAVTY 82 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~~~~~ 82 (94)
-|..+|..++..+-+.+.++.+..+|+.+... ++.....|...+..-.+.++ ++.+.++|++-.... ..|+...|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 38889999999999999999999999999865 55677888888888888888 999999999987654 24666666
Q ss_pred HHHHH
Q 034447 83 NTVYQ 87 (94)
Q Consensus 83 ~~ll~ 87 (94)
..-++
T Consensus 143 ~~Yl~ 147 (679)
T 4e6h_A 143 LSYIT 147 (679)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 194
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=91.36 E-value=0.92 Score=24.29 Aligned_cols=64 Identities=13% Similarity=0.000 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNT 84 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 84 (94)
+-+..+...|++++|..+.+.+. .||...|-++-. .+.|..+++..-+.++..+|- |....|..
T Consensus 44 IR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg~-p~~q~Fa~ 107 (115)
T 2uwj_G 44 IRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSSD-PALADFAA 107 (115)
T ss_dssp HHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCSS-HHHHHHHH
T ss_pred HHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 33455667888888887776655 599999988866 688888888888888887774 55555543
No 195
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.32 E-value=1.8 Score=27.42 Aligned_cols=76 Identities=12% Similarity=0.014 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC--cc
Q 034447 9 ISSYSSYIKFLGKN-----GNSLKALEIYNSITDESDKV--NVFICNLILSCLVRN-GKFESSLKLFDKIKQSGLT--PD 78 (94)
Q Consensus 9 ~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~p--~~~t~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~--p~ 78 (94)
-..|..+-..|.+. |+.++|.+.|++-.+. .| +.-++...-+.++.. |+.+++.+.+++-.+.... |+
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 46788888889994 9999999999988864 36 367777788888885 9999999999999888766 77
Q ss_pred HHHHHHHH
Q 034447 79 AVTYNTVY 86 (94)
Q Consensus 79 ~~~~~~ll 86 (94)
....+.+-
T Consensus 277 ~~lan~~~ 284 (301)
T 3u64_A 277 NKLLVILS 284 (301)
T ss_dssp CHHHHHHH
T ss_pred hhHHHHHH
Confidence 66555543
No 196
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.11 E-value=1 Score=24.16 Aligned_cols=64 Identities=16% Similarity=0.088 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNT 84 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 84 (94)
+-+..+...|++++|..+.+.+. .||...|-++-. .+.|..+++..-+.++..+|- |....|..
T Consensus 45 IR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg~-p~~q~Fa~ 108 (116)
T 2p58_C 45 IRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQD-PRIQTFVN 108 (116)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCCC-HHHHHHHH
T ss_pred HHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 34456667888888888877665 488888888766 677888888888888877764 55555543
No 197
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=90.38 E-value=2.4 Score=27.12 Aligned_cols=65 Identities=6% Similarity=-0.153 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVF--ICNLILS-CLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--t~~~li~-~~~~~g~~~~a~~~~~~m~~ 72 (94)
+...+..+-..|.+.|++++|...|++..+....+... .+..+-. ...+.|+.++|+..|++..+
T Consensus 333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 333 LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34556777888999999999999999988765444321 1222221 23567899999998887655
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=90.32 E-value=1.6 Score=24.97 Aligned_cols=61 Identities=16% Similarity=0.000 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCch-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVN-------------VFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
.+...=..+.+.|++++|...|++-.+.. |+ ...|+.+-.++.+.|++++|+..+++-.+-
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34445556778899999999999876532 32 348999999999999999999999997763
No 199
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.99 E-value=2 Score=27.13 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=42.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCc----------------hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 17 KFLGKNGNSLKALEIYNSITDESDKV----------------NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 17 ~~~~~~g~~~~a~~~~~~m~~~~~~p----------------~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..+.+.|++++|.+.|.+..+..-.. ....+..+...|...|++++|.+.+.+..+
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678899999999999887532211 113477888999999999999999988654
No 200
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=88.76 E-value=1.7 Score=30.02 Aligned_cols=60 Identities=8% Similarity=-0.038 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
+...|..+=.++.+.|++++|...|++..+.. | +...|..+-..+.+.|++++ ++.|++.
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a 526 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTV 526 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence 34455555556666666666666666554321 2 23333344444444444444 4444443
No 201
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=88.67 E-value=6.9 Score=30.42 Aligned_cols=54 Identities=15% Similarity=0.047 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
+...|..+=..|-..|++++|..+|... ..|..+..++.+.|++++|.+.+++-
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 4444555555555666666666666553 46777777777777777777776655
No 202
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=88.33 E-value=2.4 Score=24.45 Aligned_cols=65 Identities=11% Similarity=0.012 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 034447 9 ISSYSSYIKFLGK----NGNSLKALEIYNSITDESDK-VNVFICNLILSCLVR----NGKFESSLKLFDKIKQS 73 (94)
Q Consensus 9 ~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~ 73 (94)
...+..+=..|.. .+++++|...|++-.+.|-. -+...+..|-..|.. .+++++|+..|++-.+.
T Consensus 85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 3444445455554 67788888888777766532 125666666667766 67888888888887665
No 203
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.30 E-value=2.4 Score=24.38 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 22 NGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
.+++++|.++|+.+.+.+-++ ...|-....==.+.|+...|.+++.+-...+-.| .....+.|+-...|+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl~~~~ 142 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNLNLQK 142 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhhhcCC
Confidence 378999999999997654444 5555555554467899999999999998887665 445667776655554
No 204
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=88.07 E-value=3.4 Score=25.81 Aligned_cols=67 Identities=6% Similarity=-0.156 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVN--VFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
..-.+-..+.+.+++++|...|+...... .|. ...+..+=.++.+.|++++|++.|++.......|.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~ 205 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEA 205 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcc
Confidence 33344447778888888888887554432 121 23566666778899999999999998875444254
No 205
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.59 E-value=2.2 Score=24.15 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=37.5
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILS 52 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 52 (94)
.|+.....+.|++|-+..++..|.++|+..+... .+....|..++.
T Consensus 85 VPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 85 VPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 6899999999999999999999999999988542 233456777665
No 206
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=87.43 E-value=2.6 Score=23.82 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCccHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNG--KFESSLKLFDKIKQSGLTPDAVT 81 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~ 81 (94)
..+.+|.=|...|+.++|.++++++..-.+ ....+..++..++-+.+ ..+.+.+++..+.+.|+.+....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 456789999999999999999999974322 34566667677776643 34567788888888887654443
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=87.42 E-value=1.8 Score=22.01 Aligned_cols=60 Identities=8% Similarity=0.098 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 27 KALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 27 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
++...|++..+.. +-+...|..+-..|...|++++|+..|++..+..- .+...|..+-..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 62 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKT 62 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHH
Confidence 4566666665432 23678889999999999999999999999877542 234445444433
No 208
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=86.85 E-value=4.8 Score=26.24 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 034447 23 GNSLKALEIYNSITDESDKVNVFICNLILSCLVR----NGKFESSLKLFDKIKQ 72 (94)
Q Consensus 23 g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~ 72 (94)
++.++|...|++..+.| +...+..+-..|.. .++.++|+..|++-.+
T Consensus 165 ~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 34444444444444332 23333333333433 4444444444444433
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=86.85 E-value=2.4 Score=22.84 Aligned_cols=63 Identities=14% Similarity=0.086 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 034447 10 SSYSSYIKFLGK----NGNSLKALEIYNSITDESDKVNVFICNLILSCLVR----NGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 10 ~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~ 75 (94)
..+..+=..|.. .+++++|...|++-.+.| +...+..|-..|.. .++.++|...|++-.+.|.
T Consensus 58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 334444444444 556666666666665553 33444445555555 5666666666666665553
No 210
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=86.22 E-value=5.2 Score=26.06 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=6.0
Q ss_pred cCCHHHHHHHHHHHh
Q 034447 22 NGNSLKALEIYNSIT 36 (94)
Q Consensus 22 ~g~~~~a~~~~~~m~ 36 (94)
.+++++|...|++-.
T Consensus 92 ~~~~~~A~~~~~~a~ 106 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAA 106 (490)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 334444444444333
No 211
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.16 E-value=4.9 Score=26.33 Aligned_cols=62 Identities=6% Similarity=-0.003 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDE--SDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+...+-..|.+.|++++|.+++.++... +..--+..+-.+|+.+...+++..+...+++...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456778899999999999999999853 3345677888899999999999999999988753
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=84.79 E-value=1.9 Score=29.66 Aligned_cols=45 Identities=11% Similarity=0.115 Sum_probs=30.5
Q ss_pred hcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 21 KNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 21 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
+.|++++|.++.+.+ .+...|..+-..+.+.++++.|++.|.++.
T Consensus 664 ~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 344555555544333 356788888888888888888888887764
No 213
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.79 E-value=2.4 Score=27.41 Aligned_cols=42 Identities=12% Similarity=0.049 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCchHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITD-----ESDKVNVFICNL 49 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~t~~~ 49 (94)
+...|..+|.++.+.|+..+|.+.|+...+ .|+.|...+-..
T Consensus 204 ~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 204 REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 778899999999999999999999998753 589887766443
No 214
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=83.71 E-value=3.8 Score=22.38 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCccHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNG--KFESSLKLFDKIKQSGLTPDAVT 81 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~ 81 (94)
..+.+|.=|...|+.++|.++++++..-.+ ....+..++..++-+.+ ..+.+.+++..+.+.|+.+....
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 456788999999999999999999974322 34566666677776654 24677888888888887654443
No 215
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=82.10 E-value=8.1 Score=25.02 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCccHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGK--FESSLKLFDKIKQSGLTPDAVTYNTV 85 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~l 85 (94)
...+.+|.=|...|+.++|.++++++..-.+. ...+..++..+.-+.++ .+...+++..+.+.|+.+.......+
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf 294 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 294 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 34678899999999999999999999754333 34556666666665443 45688888888888876655444333
No 216
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=81.40 E-value=3.1 Score=19.72 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVR 56 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 56 (94)
+...+..+-..+.+.|++++|...+++..... +-+...+..+-..+.+
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 89 (91)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 56678888889999999999999999887642 1245555555444443
No 217
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.28 E-value=7.8 Score=23.09 Aligned_cols=55 Identities=9% Similarity=0.024 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 24 NSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 24 ~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
...++.++|..|...|+-- -..-|-....-+...|++.+|..+|+.=.+.+-.|-
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3569999999999887754 556677888888899999999999999888887773
No 218
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.19 E-value=5.5 Score=21.31 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 24 NSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 24 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+.++|.-+-+-+...+. ...+--+-+.+..+.|++++|.++.+.+. .||...|-.|-.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce 78 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE 78 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH
Confidence 46778777777776644 33333333455678999999998876654 689988877644
No 219
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=79.03 E-value=8.6 Score=27.47 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=44.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 18 FLGKNGNSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 18 ~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
.+...|+++-|..+-++-... .| +-.+|-.|..+|...|+++.|+-.++.+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345679999999998877643 46 68999999999999999999999998874
No 220
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.93 E-value=5.7 Score=21.30 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 034447 24 NSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQ 87 (94)
Q Consensus 24 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (94)
+.++|.-+-+-+...+. ...+--+-+....+.|++++|..+.+.+. .||...|-.|-.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce 79 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE 79 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH
Confidence 46788777777776644 33333333455678999999999887665 699998877654
No 221
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=78.68 E-value=15 Score=25.84 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNSITDESDK--VNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+...++.....|+.+.|..+|+......-. -....|...++-=.+.|+.+.+.++.+++.+.
T Consensus 507 w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 507 INKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344444444555555555555555433211 13344555555445555555555555555443
No 222
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=78.38 E-value=7.5 Score=22.35 Aligned_cols=54 Identities=13% Similarity=0.098 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 034447 26 LKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDA 79 (94)
Q Consensus 26 ~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 79 (94)
+++.++|..|...|+-- -..-|.....-+-..|++.+|..||+.=.+.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 55778999999887754 4556777777788899999999999998888888844
No 223
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=77.48 E-value=5.1 Score=19.95 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 43 NVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 43 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
+...+..+-..|...|++++|+..|++..+..-. +...|..+-.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~ 50 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKL 50 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 6778888899999999999999999998775421 23344444444
No 224
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=77.24 E-value=5.6 Score=25.29 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCc
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNG-KFESSLKLFDKIKQSGLTP 77 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p 77 (94)
-.+.+|.=|...|+.++|.++++++..-.+ ....+..++..+.-+.. ..+.+.+++..+.+.|+.+
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 346788889999999999999999974333 23344444444443322 3345666777777766644
No 225
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=76.55 E-value=10 Score=22.96 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 26 LKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 26 ~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
+++.++|..|...|+-- -..-|-.....+...|++.+|..||+.=.+.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 67889999999887754 556677888888899999999999999888877773
No 226
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=76.10 E-value=5.4 Score=19.57 Aligned_cols=46 Identities=11% Similarity=0.173 Sum_probs=33.5
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 42 VNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 42 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
++...|..+-..+...|++++|+..|++..+..- .+...|..+-.+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 47 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMA 47 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4567788888899999999999999999876532 244555444443
No 227
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=74.62 E-value=13 Score=23.25 Aligned_cols=65 Identities=12% Similarity=0.170 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCC--CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGN-SLKALEIYNSITDES--DKVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
|...|+-+-..+.+.|. .++...+.++....+ -..+...+..+.+.|.+.|+.++|.++++.+.+
T Consensus 219 n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 219 NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 66777777777777776 444556776665432 124778899999999999999999999999875
No 228
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=73.73 E-value=3.8 Score=19.38 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhCCCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 25 SLKALEIYNSITDESDKVN--VFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 25 ~~~a~~~~~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
.++....+.+|- |+ ..+-...+. ...|+++.|++.+-+|...+..|+
T Consensus 9 ~ee~l~~L~emF-----P~ld~~~I~~vL~--a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 9 SEEDLKAIQDMF-----PNMDQEVIRSVLE--AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp CHHHHHHHHHHC-----SSSCHHHHHHHHT--TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred CHHHHHHHHHHC-----CCCCHHHHHHHHH--HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 355555666663 33 332222222 556789999999888887777665
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=73.67 E-value=11 Score=21.93 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=34.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 17 KFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 17 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
....+.|+++.|.++-+++. +...|..+-+..-..|+++-|++.|.+..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 44557788888888877662 56677777777777777777777666553
No 230
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.06 E-value=14 Score=23.04 Aligned_cols=71 Identities=17% Similarity=0.169 Sum_probs=51.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCccHHHHHHHHHH
Q 034447 17 KFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS--GLTPDAVTYNTVYQS 88 (94)
Q Consensus 17 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~ 88 (94)
....+.|.++++..-...-.+.. +-|...=..++.-+|-.|+++.|.+=++...+. ...|...+|-.+|++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 34567889999988666554431 337888888999999999999999877776553 344566677777766
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=72.46 E-value=11 Score=21.52 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=32.4
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDK 41 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 41 (94)
+|+....--+-.+|.+.|+..++.+++.+--+.|++
T Consensus 122 ~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 122 EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 678888888999999999999999999999888875
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=72.17 E-value=10 Score=21.05 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=43.1
Q ss_pred CccHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 6 KTSISSYSSYIKFLGKNG---NSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
.|+..|==.+--++.+.. +...+..++++..+.+-.-..-..=-|.-|+.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 444433223333444544 45678888888876552113334445566789999999999999988764
No 233
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=70.52 E-value=12 Score=21.17 Aligned_cols=53 Identities=8% Similarity=0.079 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 26 LKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 26 ~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
+++.++|..|...|+-- -..-|......+-..|++.+|..+|+.=.+.+-+|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 56889999999887754 556677888888899999999999999888888883
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=70.42 E-value=23 Score=24.33 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=43.9
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---------Cch-----------HHHHHHHHHHHHhcCCHHHHHHH
Q 034447 7 TSISSYSSYIKFLGKNGNSLKALEIYNSITDESD---------KVN-----------VFICNLILSCLVRNGKFESSLKL 66 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---------~p~-----------~~t~~~li~~~~~~g~~~~a~~~ 66 (94)
.+...|..+-..+.+.|+++.|.++|..+....- .++ ..-++....+|.+.|++++|+++
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~ 758 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDL 758 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHH
Confidence 3567888999999999999999999988743100 000 11233345556677888888888
Q ss_pred HHHHH
Q 034447 67 FDKIK 71 (94)
Q Consensus 67 ~~~m~ 71 (94)
+.++.
T Consensus 759 ~~~~~ 763 (814)
T 3mkq_A 759 LIKSQ 763 (814)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 87764
No 235
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=69.25 E-value=19 Score=22.77 Aligned_cols=70 Identities=14% Similarity=0.123 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCccHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGK--FESSLKLFDKIKQSGLTPDAVT 81 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~ 81 (94)
..+.+|.=|...|+.++|.++++++..-.+ ....+..++..+.-+.++ .+.+.+++..+.+.|+.+....
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f-~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGG-HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 345788889899999999999999974322 244556666666665433 4567788888888777654443
No 236
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=69.13 E-value=14 Score=21.12 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCc
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGK--FESSLKLFDKIKQSGLTP 77 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p 77 (94)
....+|.=|-..|+.++|...++++..-.+.| .++...+-.++ ..++ -+.+.+++..+.. ++.+
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~-~~V~~~I~~al-drk~~ere~~s~LL~~L~~-~~ls 77 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKS-GVPVLAVSLAL-EGKASHREMTSKLLSDLCG-TVMS 77 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGG-HHHHHHHHHHH-TSCHHHHHHHHHHHHHHBT-TTBC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcccHH-HHHHHHHHHHH-cCCHHHHHHHHHHHHHHHH-CCCC
Confidence 34578888989999999999999997544333 22233333333 3332 3345567777744 4443
No 237
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=68.57 E-value=14 Score=21.14 Aligned_cols=61 Identities=7% Similarity=0.008 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--hHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKV--NVFICNLILS-C-----LVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~t~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 72 (94)
.|...+..|-. |++-+|.++|++.=...-.+ ....|..||. . ..+.|+...|..++++-..
T Consensus 35 ~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34555555555 99999999999886554445 6777888888 2 2467999999999988754
No 238
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=68.16 E-value=22 Score=23.11 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHhhCCCCchHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcC
Q 034447 23 GNSLKALEIYNSITDESDKVNVFICNLILSC-L--VRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 23 g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~-~--~~~g~~~~a~~~~~~m~~~g 74 (94)
+++++|...|++.. .|. ...+..+-.. + ...++.++|+..|++-.+.|
T Consensus 231 ~d~~~A~~~~~~aa-~g~---~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PGY---PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp CCHHHHHHHHHHHG-GGS---THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHc-CCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 56777777776665 332 2333333333 2 34667777777777766655
No 239
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=68.05 E-value=22 Score=23.10 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCC
Q 034447 11 SYSSYIKFLGKNG---NSLKALEIYNSITDESDKVNVFICNLILSCLVRN----GKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 11 ~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~----g~~~~a~~~~~~m~~~g~ 75 (94)
.+..+-..|.+.| +.++|...|++-.+.|- ++...+..+-..|... +++++|+..|++.. .|.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~ 247 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY 247 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC
Confidence 4555556666677 77788888877776664 3334334444444433 57888888888776 443
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=66.82 E-value=15 Score=20.70 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=37.1
Q ss_pred HHHHhcC---CHHHHHHHHHHHhhCCCCchHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 17 KFLGKNG---NSLKALEIYNSITDESDKVNVFIC-NLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 17 ~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~t~-~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
-++.+.. +..++..++++....+-. +..-| =-|.-++.+.|++++|.+..+.+.+.
T Consensus 47 w~Lv~S~~~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 47 WGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3445554 456778888888764321 22222 23455789999999999999998764
No 241
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=65.53 E-value=11 Score=23.51 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=30.7
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 034447 31 IYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 31 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 75 (94)
+++.+.+.|+.|..+++.-++..|++.=..+.+.++++-+...|.
T Consensus 176 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~ 220 (310)
T 3hzj_A 176 LHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL 220 (310)
T ss_dssp HHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc
Confidence 445555667777777777777777766677777777777766664
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=65.16 E-value=18 Score=21.03 Aligned_cols=63 Identities=14% Similarity=0.028 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--------------------chHHHHHHHHHHHHhcCCHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNGNSLKALEIYNSITDESDK--------------------VNVFICNLILSCLVRNGKFESSLKLF 67 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--------------------p~~~t~~~li~~~~~~g~~~~a~~~~ 67 (94)
+...|..|=....+.|+++-|.++|......+-- -...-+|....++...|+++++.++|
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHH
Confidence 4567888888888888888888888776531000 00112444455556667777777776
Q ss_pred HHH
Q 034447 68 DKI 70 (94)
Q Consensus 68 ~~m 70 (94)
.+.
T Consensus 113 ~~~ 115 (177)
T 3mkq_B 113 AEG 115 (177)
T ss_dssp HHT
T ss_pred HHC
Confidence 543
No 243
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=64.83 E-value=8.4 Score=24.36 Aligned_cols=45 Identities=7% Similarity=0.332 Sum_probs=34.0
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 30 EIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 30 ~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
++++.+.+.|+.|..+++.-++..|++.=.++.+.++++-+...|
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 355566677888888888877777777778888888888877766
No 244
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=64.82 E-value=9.7 Score=23.90 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=29.5
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 034447 30 EIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLT 76 (94)
Q Consensus 30 ~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 76 (94)
++++.+.+.|+.|..+++.-++..|++.=.++.+.++++-+...|..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 34555556666666666666666666666666666666666665543
No 245
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=64.53 E-value=26 Score=22.66 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCccHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNG-KFESSLKLFDKIKQSGLTPDAV 80 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~ 80 (94)
..-..+|.=|-..|++++|..+++++..-+--...+.+.++..++-+.. .-+.+.+++..+.++++.+...
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~ 84 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDN 84 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4567889999999999999999999975210012344444444443322 2345667788888777654333
No 246
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=64.46 E-value=21 Score=21.69 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhCCCCchHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 25 SLKALEIYNSITDESDKVNVF-------ICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 25 ~~~a~~~~~~m~~~~~~p~~~-------t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
++.|..+|+.+.+..-.++.. .=-..+-.|.+.|.+++|.+++++...+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 478899999887543222211 1113345678999999999999997654
No 247
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=63.07 E-value=17 Score=19.93 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=44.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCchHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 7 TSISSYSSYIKFLGKNGNSLK---ALEIYNSITDESDKVNVFICN-LILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 7 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~m~~~~~~p~~~t~~-~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
|+..+--.+--++.+.....+ +..++++....+-+.+..-+. .|.-++.+.|++++|.+.++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 444444444556666766655 888999888764221233332 3445688999999999999998764
No 248
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=62.95 E-value=11 Score=17.75 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=16.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCc
Q 034447 57 NGKFESSLKLFDKIKQSGLTP 77 (94)
Q Consensus 57 ~g~~~~a~~~~~~m~~~g~~p 77 (94)
.-+++.|...|.++...|-.|
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP 53 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIP 53 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSC
T ss_pred CCCHHHHHHHHHHHHHcCCCC
Confidence 459999999999998765444
No 249
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=62.60 E-value=16 Score=19.65 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCC
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGK 59 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 59 (94)
.++..+.+.+..-.|.++++.+.+.+-..+..|-=--++.+.+.|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4556666666677777777777766544444444444555555553
No 250
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=61.55 E-value=24 Score=22.28 Aligned_cols=47 Identities=11% Similarity=0.206 Sum_probs=39.1
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 034447 30 EIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLT 76 (94)
Q Consensus 30 ~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 76 (94)
++++.+.+.|+.|..+++.-++..|++.=.++.+.++++.+...|-.
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~ 276 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDG 276 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTT
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCC
Confidence 34556667889999999999999898888999999999999888754
No 251
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=60.89 E-value=34 Score=22.76 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
..|...+...-+.+.++.|..+|+.....+..+.+....+.+.-.. .++.+.|.++|+...+.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLK 349 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHH
Confidence 5567777777777889999999998832222333333334444333 23689999999987764
No 252
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=60.71 E-value=16 Score=20.00 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNG 58 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 58 (94)
.+|..+.+.+..-.|.++++.+.+.+-..+..|-=--++.+.+.|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 455556555556667777777765544444444333345555444
No 253
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=59.25 E-value=8.2 Score=17.72 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHcCCCccHH
Q 034447 58 GKFESSLKLFDKIKQSGLTPDAV 80 (94)
Q Consensus 58 g~~~~a~~~~~~m~~~g~~p~~~ 80 (94)
.++..|+++++.+.+.|-.|...
T Consensus 7 RDv~RaiELle~lq~sgevp~~K 29 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNAK 29 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcHH
Confidence 46677888888888888766543
No 254
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=58.25 E-value=20 Score=19.36 Aligned_cols=65 Identities=3% Similarity=-0.076 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCC---HHHHH----HHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 10 SSYSSYIKFLGKNGN---SLKAL----EIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~---~~~a~----~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
.+++.++..|...-. ++++. .+|+.+....+.|++..--.-|......++++.|.++..++....
T Consensus 20 ~~l~~~l~~~~~~~~k~~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~~ 91 (118)
T 2yru_A 20 RPLEQALEDCHGHTKKQVCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVDH 91 (118)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCc
Confidence 456667776654322 34443 367788888898888777777777889999999999999887654
No 255
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=57.98 E-value=6 Score=18.78 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHH-HhcCC
Q 034447 26 LKALEIYNSITDESDKVNVFICNLILSCL-VRNGK 59 (94)
Q Consensus 26 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~-~~~g~ 59 (94)
++|.+.|.+|.+..--+...||.-.|+.. ++..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPr 37 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPR 37 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCc
Confidence 56777777776443335557788888877 55443
No 256
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=56.37 E-value=21 Score=19.28 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=18.5
Q ss_pred HhhCCCCchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q 034447 35 ITDESDKVNVFICNLILSCLVRNG-KFESSLKLFDKIKQSG 74 (94)
Q Consensus 35 m~~~~~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g 74 (94)
+++.|++++..-..+ +..+...+ ..-.|.++++.+.+.+
T Consensus 9 l~~~g~r~T~qR~~I-l~~L~~~~~~~~sa~ei~~~l~~~~ 48 (136)
T 1mzb_A 9 LRKAGLKVTLPRVKI-LQMLDSAEQRHMSAEDVYKALMEAG 48 (136)
T ss_dssp HHHTTCCCCHHHHHH-HHHHHCC-CCSBCHHHHHHHHHHTT
T ss_pred HHHCCCCCCHHHHHH-HHHHHhCCCCCCCHHHHHHHHHhhC
Confidence 444555544433322 33344443 4445666666665554
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=56.36 E-value=27 Score=20.17 Aligned_cols=60 Identities=3% Similarity=0.050 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCch-------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDE-SDKVN-------VFICNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~-------~~t~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
.+-.=++.+...|.++.|+.+-+.+... +..|+ ..+...+-+++...+++..|...|++-
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3445577788899999999888876532 12233 246667778899999999999999995
No 258
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=56.32 E-value=23 Score=19.42 Aligned_cols=46 Identities=7% Similarity=0.113 Sum_probs=27.2
Q ss_pred HHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 034447 33 NSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDA 79 (94)
Q Consensus 33 ~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 79 (94)
+.+++.|++++..--.+ +..+...+..-.|.++++.+.+.+-..+.
T Consensus 11 ~~l~~~g~r~T~qR~~I-l~~L~~~~~~~sa~ei~~~l~~~~~~is~ 56 (145)
T 2fe3_A 11 ETLKETGVRITPQRHAI-LEYLVNSMAHPTADDIYKALEGKFPNMSV 56 (145)
T ss_dssp HHHHHTTCCCCHHHHHH-HHHHHHCSSCCCHHHHHHHHGGGCTTCCH
T ss_pred HHHHHcCCCCCHHHHHH-HHHHHhCCCCCCHHHHHHHHHHhCCCCCh
Confidence 44666777665544433 44455555566777888888776543333
No 259
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=54.93 E-value=4.8 Score=21.81 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCC
Q 034447 24 NSLKALEIYNSITDESDKV-NVFICNLILSCLV---RNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 24 ~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~---~~g~~~~a~~~~~~m~~~g~ 75 (94)
.+++|.+++..|++.-+.. ....||..|..+. ..++. ..+++.+.+.++
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~l 94 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGI 94 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCc
Confidence 5778888888887554432 5666777777664 33333 344555555544
No 260
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=54.90 E-value=25 Score=19.46 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=28.3
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 034447 31 IYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDA 79 (94)
Q Consensus 31 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 79 (94)
+-+.+++.|++++..--. ++..+...+..-.|.++++.+.+.+...+.
T Consensus 14 ~~~~l~~~g~r~T~qR~~-IL~~l~~~~~~~sa~ei~~~l~~~~~~is~ 61 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQREE-VVSVLYRSGTHLSPEEITHSIRQKDKNTSI 61 (150)
T ss_dssp HHHHHHHCC--CHHHHHH-HHHHHHHCSSCBCHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCCH
Confidence 334566777776655443 355555666667788888888776543333
No 261
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=54.76 E-value=32 Score=20.53 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=23.1
Q ss_pred hcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC
Q 034447 21 KNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNG 58 (94)
Q Consensus 21 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 58 (94)
+-.+++.|.--+-.|.+.|-.|....=-.++-+.-.-|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34567777777777777666665555555555555555
No 262
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=53.76 E-value=43 Score=21.83 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=33.5
Q ss_pred CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 034447 41 KVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYN 83 (94)
Q Consensus 41 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 83 (94)
+.+..+|.++--.+...|++++|...+++....+ |+...|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~ 314 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYV 314 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHH
Confidence 4577888888777777899999999999998876 7776663
No 263
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=53.56 E-value=33 Score=20.50 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=30.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCC--HH---HHHHHHHHHHHcCC
Q 034447 21 KNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGK--FE---SSLKLFDKIKQSGL 75 (94)
Q Consensus 21 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~--~~---~a~~~~~~m~~~g~ 75 (94)
+-.+++.|.--+-.|.+.| .|....=-.++-+.-.-|. +. -|...++-...-|.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3467777777777777777 6655555555555555553 22 23333444444555
No 264
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=52.34 E-value=17 Score=23.58 Aligned_cols=45 Identities=16% Similarity=0.318 Sum_probs=38.8
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 30 EIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 30 ~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
++++.+.+.|+.|..+++.-++-.|.+.=.++.+.++++.+...|
T Consensus 217 ~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg 261 (396)
T 1fkm_A 217 DLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSET 261 (396)
T ss_dssp HHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCC
Confidence 456666778999999999999999998889999999999988766
No 265
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=52.12 E-value=9.6 Score=19.23 Aligned_cols=33 Identities=3% Similarity=-0.081 Sum_probs=22.3
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 39 SDKVNVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 39 ~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
+++|++.||+-+.+.+-+..-..++..+.+++-
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 456788888887776666666666666665553
No 266
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=51.88 E-value=37 Score=20.44 Aligned_cols=30 Identities=13% Similarity=0.421 Sum_probs=19.4
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHHcCCCccHH
Q 034447 51 LSCLVR---NGKFESSLKLFDKIKQSGLTPDAV 80 (94)
Q Consensus 51 i~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~ 80 (94)
|+++.+ .++++.|+-.+.+|.+.|..|...
T Consensus 39 ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~I 71 (213)
T 3ctd_A 39 ISAFIKSIRGSDPDATLYWLANMVEAGEDPNFI 71 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 555543 357777777777777777666444
No 267
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=51.62 E-value=14 Score=25.59 Aligned_cols=73 Identities=10% Similarity=0.038 Sum_probs=39.9
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHhhC-CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 034447 12 YSSYIKFLGKN--GNSLKALEIYNSITDE-SDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTVY 86 (94)
Q Consensus 12 ~~~ll~~~~~~--g~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 86 (94)
|..-|..+..+ ...........++..+ .+. +..--.-++..|.+.|..+.|.++++.+..+-+. +...|.+|.
T Consensus 482 W~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~-Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~geAL~ 557 (570)
T 3f3f_C 482 WPVAIGLIALSATGTRSAKKMVIAELLPHYPFV-TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNIIESIA 557 (570)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCC-SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------
T ss_pred hhHHHHHHhcCCccchhHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHHHHHH
Confidence 44555555544 3455666777766643 333 3334556788899999999999999888765443 333444443
No 268
>3a54_A Protein-glutaminase; mutant structure like A substrate-enzyme complex, hydrolase; 1.50A {Chryseobacterium proteolyticum} PDB: 3a55_A 3a56_A*
Probab=51.30 E-value=31 Score=21.58 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHcCCCcc
Q 034447 42 VNVFICNLILSCLVRN-------------------GKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 42 p~~~t~~~li~~~~~~-------------------g~~~~a~~~~~~m~~~g~~p~ 78 (94)
||..|++.|...+... |....|..+-..+.+.|+.|+
T Consensus 120 P~~~T~~~Lf~~i~n~rd~r~~asq~~I~F~YpdDGCyARAHLM~~~l~~~Gi~p~ 175 (305)
T 3a54_A 120 PDVATLNSLFNQIKNQSCGTSTASSPCITFRYPVDGCYARAHKMRQILMNNGYDCE 175 (305)
T ss_dssp SCHHHHHHHHHHHHTTBTTSTTCCSSCBCTTCTTSCHHHHHHHHHHHHHHTTBCCE
T ss_pred CchhhHHHHHHHHhhhhcchhhccCCCccccCCcccHHHHHHHHHHHHHHcCCChh
Confidence 8899999988877543 667888888899999999875
No 269
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=50.77 E-value=29 Score=19.02 Aligned_cols=40 Identities=3% Similarity=0.067 Sum_probs=18.0
Q ss_pred HHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 034447 34 SITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 34 ~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 75 (94)
.+++.|++++..--.+ ++.+...+ .-.|.++++++.+.+.
T Consensus 9 ~L~~~g~r~T~qR~~I-l~~l~~~~-h~ta~ei~~~l~~~~~ 48 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQLV-LEAVDTLE-HATPDDILGEVRKTAS 48 (145)
T ss_dssp HHHTTTCCCCHHHHHH-HHHHHHHS-SBCHHHHHHHHHTTCT
T ss_pred HHHHcCCCcCHHHHHH-HHHHHhcC-CCCHHHHHHHHHhhCC
Confidence 3444555544333222 33333333 3356666666655543
No 270
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=49.63 E-value=13 Score=22.98 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 034447 47 CNLILSCLVRNGKFESSLKLFDKI 70 (94)
Q Consensus 47 ~~~li~~~~~~g~~~~a~~~~~~m 70 (94)
=|.+++-|...|+.+.|.++++++
T Consensus 37 ~n~l~R~FL~~gkl~AAr~l~~rl 60 (270)
T 3cqc_A 37 GNAIMRKFLASKKHEAAKEVFVKI 60 (270)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHC
Confidence 355566666666666666666654
No 271
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=49.57 E-value=28 Score=18.42 Aligned_cols=56 Identities=7% Similarity=0.022 Sum_probs=42.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 034447 17 KFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVR----NGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 17 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~ 75 (94)
..|...+.+++|.+.|++-.+.| +...+..|-..|.. .+++++|+..|++-.+.|.
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 92 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND 92 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCC
Confidence 33444566788999999888765 55666677777777 7899999999999888764
No 272
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=47.39 E-value=19 Score=22.32 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITD 37 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~ 37 (94)
.-|.+++.|-.+|+++.|.++++.+..
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~rlp~ 62 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVKIPQ 62 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHCCh
Confidence 347899999999999999999997653
No 273
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=46.80 E-value=29 Score=19.17 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=17.9
Q ss_pred HhhCCCCchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q 034447 35 ITDESDKVNVFICNLILSCLVRNG-KFESSLKLFDKIKQSG 74 (94)
Q Consensus 35 m~~~~~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g 74 (94)
|++.|++++..-..+ +..+...+ ..-.|.++++.+.+.+
T Consensus 8 l~~~g~r~T~qR~~I-l~~L~~~~~~h~sa~ei~~~l~~~~ 47 (150)
T 2w57_A 8 LKDAGLKVTLPRLKI-LEVLQQPECQHISAEELYKKLIDLG 47 (150)
T ss_dssp HHHTTCCCCHHHHHH-HHHHTSGGGSSEEHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHHHH-HHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 444555544433322 33333333 3445566666665543
No 274
>1dvk_A PRP18; PRE-mRNA splicing factor, X-RAY crystallography, RNA binding protein; 2.15A {Saccharomyces cerevisiae} SCOP: a.72.1.1
Probab=45.43 E-value=44 Score=19.44 Aligned_cols=45 Identities=4% Similarity=0.107 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 034447 27 KALEIYNSITDESDKVNVFICNLILSCLVRN-GKFESSLKLFDKIK 71 (94)
Q Consensus 27 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~-g~~~~a~~~~~~m~ 71 (94)
....+|..++...++.|+..--+-|--+++. +++-+|.+.|=+|.
T Consensus 64 ~l~PL~~~Lr~~~L~~dil~~L~~Iv~~~q~~r~y~~And~Yl~La 109 (173)
T 1dvk_A 64 ALFPLLLQLRRNQLAPDLLISLATVLYHLQQPKEINLAVQSYMKLS 109 (173)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 3466888999999999998888888888888 99999999998874
No 275
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=45.06 E-value=65 Score=21.37 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
+...++...+.|+.+.|..+|+.... ....|...+.-=...|+.+.+.+++++..
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344444555566666666655421 34455555554455566666666666654
No 276
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=44.59 E-value=5.9 Score=22.47 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHH
Q 034447 24 NSLKALEIYNSITDESDKV-NVFICNLILSCL 54 (94)
Q Consensus 24 ~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~ 54 (94)
.+++|.+++..|++.-+.. ....||..|..+
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~L 104 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKAL 104 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 3555666666555432221 334455555444
No 277
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=44.54 E-value=12 Score=17.47 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHhhCCCCchHH
Q 034447 24 NSLKALEIYNSITDESDKVNVF 45 (94)
Q Consensus 24 ~~~~a~~~~~~m~~~~~~p~~~ 45 (94)
+++.|...|.+. +..++|+.+
T Consensus 34 d~~~A~~~F~~~-~~~IP~eAF 54 (57)
T 2jp7_A 34 NYEVAIKGFQSS-MNGIPREAF 54 (57)
T ss_dssp CSHHHHHHHHHS-TTTSCHHHH
T ss_pred CHHHHHHHHHHH-HcCCCHHHh
Confidence 678888888886 445766654
No 278
>4gt9_A TS, tsase, thymidylate synthase THYX; flavin-dependent thymidylate synthase, TM0449, FAD, DUMP, 5, methylenetetrahydrofolate, transferase; HET: FAD UMP MEF; 1.39A {Thermotoga maritima} PDB: 1kq4_A 1o25_A* 1o24_A* 1o27_A* 1o28_A* 1o29_A* 1o2a_A* 1o2b_A* 1o26_A* 4gta_A* 4gtb_A* 4gtl_A* 3g4a_A* 3g4c_A* 4gtd_A* 4gtc_A* 4gte_A* 4gtf_A* 3n0b_A* 3n0c_A*
Probab=43.73 E-value=52 Score=19.82 Aligned_cols=69 Identities=12% Similarity=-0.111 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhCCCC-------------------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 034447 25 SLKALEIYNSITDESDK-------------------VNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAVTYNTV 85 (94)
Q Consensus 25 ~~~a~~~~~~m~~~~~~-------------------p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 85 (94)
.+++.+.+++|.+.|+. -|...|--.++--+..+-..+...+-+.|.+.=..--+.+|..+
T Consensus 138 ~~~a~~~Y~~ll~~Gva~E~AR~vLP~a~~T~~~~T~NlRsl~hfi~LR~~~~AQ~EIR~lA~~m~~~l~~~~P~~~~a~ 217 (232)
T 4gt9_A 138 VDKAYRTYLELIESGVPREVARIVLPLNLYTRFFWTVNARSLMNFLNLRADSHAQWEIQQYALAIARIFKEKCPWTFEAF 217 (232)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHGGGSCTTBEEEEEEEEEHHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHhhcccceEEEEEEEEeHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHChHHHHHH
Confidence 36778888888888875 45666666666544444444555555555432111245778888
Q ss_pred HHHhhccc
Q 034447 86 YQSDHITW 93 (94)
Q Consensus 86 l~~~~~~~ 93 (94)
.+-+..|.
T Consensus 218 ~~~~~~g~ 225 (232)
T 4gt9_A 218 LKYAYKGD 225 (232)
T ss_dssp HHHTCCCS
T ss_pred HhhCcCcc
Confidence 87765554
No 279
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=42.96 E-value=77 Score=21.56 Aligned_cols=76 Identities=11% Similarity=0.125 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCccHHHHHH
Q 034447 8 SISSYSSYIKFLGKNG--NSLKALEIYNSITDESDKVNVFICNLILSCLVRNG-KFESSLKLFDKIKQSGLTPDAVTYNT 84 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ 84 (94)
+...|+----.+.+.+ +++++.++++++.+..- -|...|+.---...+.| .++++++.++++.+.... |...|+-
T Consensus 106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~ 183 (567)
T 1dce_A 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHY 183 (567)
T ss_dssp CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHH
T ss_pred CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHH
Confidence 4455655555666777 67999999999987542 37888888877788888 899999999888776543 4455544
Q ss_pred H
Q 034447 85 V 85 (94)
Q Consensus 85 l 85 (94)
.
T Consensus 184 r 184 (567)
T 1dce_A 184 R 184 (567)
T ss_dssp H
T ss_pred H
Confidence 3
No 280
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=42.87 E-value=35 Score=20.49 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 034447 14 SYIKFLGKNGNSLKALEIYNSIT 36 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~ 36 (94)
..+..|.+.|.+++|.++++..-
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHccchHHHHHHHHHHh
Confidence 55678899999999999999853
No 281
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=42.45 E-value=40 Score=21.09 Aligned_cols=65 Identities=8% Similarity=0.091 Sum_probs=48.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH----hcCCHHHHHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLV----RNGKFESSLKLFDKI 70 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~----~~g~~~~a~~~~~~m 70 (94)
.|...++..++..+++.=.++.+.++|+.....|.+.-....-+++..+. +..+.++...+++..
T Consensus 220 ~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 220 GPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp CGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 67778888888888888789999999999998887655555555555433 234778877777763
No 282
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=42.32 E-value=30 Score=16.64 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=20.0
Q ss_pred HHhhCCCCchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q 034447 34 SITDESDKVNVFICNLILSCLVRNG-KFESSLKLFDKIKQSG 74 (94)
Q Consensus 34 ~m~~~~~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g 74 (94)
.|.+.|++.+..-. .++..+...+ ..-.+.++++.+.+.+
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~ 47 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMG 47 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTT
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 34555655554443 3344444443 3445556666665553
No 283
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=41.24 E-value=36 Score=19.11 Aligned_cols=47 Identities=19% Similarity=0.185 Sum_probs=30.6
Q ss_pred HHHHHHH-HHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 26 LKALEIY-NSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 26 ~~a~~~~-~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
+.+.+-+ +.+++.|++++..- ..+++.+...+..-.|.++++.+.+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 3444433 34566788775544 44466677777777888888888776
No 284
>2zk9_X Protein-glutaminase; deamidation glutaminase, hydrolase; 1.15A {Chryseobacterium proteolyticum} PDB: 2ksv_A 2z8t_X
Probab=40.82 E-value=54 Score=19.16 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=20.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 54 LVRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 54 ~~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
|...|....|..+-..+.+.|+.|+
T Consensus 37 YpddGCyARAHlm~~~l~~~Gi~p~ 61 (185)
T 2zk9_X 37 YPVDGCYARAHKMRQILMNNGYDCE 61 (185)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTBCCE
T ss_pred cCcccHHHHHHHHHHHHHHcCCChh
Confidence 4566778888888888999998875
No 285
>1jyo_E Protein tyrosine phosphatase SPTP; bacterial pathogenesis, infectious disease, virulence factor, type III secretion, chaperone, unfolded; 1.90A {Salmonella typhimurium} SCOP: d.184.1.2
Probab=40.54 E-value=42 Score=17.80 Aligned_cols=32 Identities=9% Similarity=-0.100 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 43 NVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 43 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
|..|-.+.+.++.+.=..+-+.+++..+.-+|
T Consensus 42 N~qtL~vFL~ALa~~YG~~~a~~~~~k~Disg 73 (105)
T 1jyo_E 42 DQKILQTFLHALTEKYGETAVNDALLMSRINM 73 (105)
T ss_dssp CHHHHHHHHHHHHHTTSHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcccC
Confidence 55555555555555555555555555544444
No 286
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=40.17 E-value=44 Score=20.55 Aligned_cols=44 Identities=9% Similarity=0.162 Sum_probs=27.9
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCC
Q 034447 31 IYNSITDESDKVNVFICNLILSCLVRNG-KFESSLKLFDKIKQSGL 75 (94)
Q Consensus 31 ~~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~ 75 (94)
+++.+.+.++ +..+++.-++..|++.- ..+.+.++++.+...|.
T Consensus 190 L~~hL~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~ 234 (292)
T 4hl4_A 190 LHDFMQSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHP 234 (292)
T ss_dssp HHHHHC-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCC
Confidence 4555556666 34666666666665655 47777777777777764
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.83 E-value=87 Score=21.54 Aligned_cols=66 Identities=8% Similarity=-0.069 Sum_probs=43.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCC-chHHHHHHHH-HHHHhcCCHHHHHHHHHHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDE--SDK-VNVFICNLIL-SCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~-p~~~t~~~li-~~~~~~g~~~~a~~~~~~m~ 71 (94)
...+..+|.+|+.|...+.+++|..+..+...- ... ....+|..-. +-+.-.+++.+|.+.+.+-.
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334688999999999999999999999988531 111 1113333222 22356678888887766643
No 288
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=38.81 E-value=36 Score=16.54 Aligned_cols=28 Identities=7% Similarity=0.025 Sum_probs=16.6
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 66 LFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 66 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
+.+.+.+.++-.++..|-.|.+.|.+|+
T Consensus 7 lVk~L~~n~YLiTPsAYyLL~~~ykkg~ 34 (75)
T 2kxe_A 7 FVKGLMKNGYLITPSAYYLLVGHFNEGK 34 (75)
T ss_dssp HHHHHHTTTCEECHHHHHHHHHHHHTTS
T ss_pred HHHHHHHCCceeCchHHHHHHHHhhccc
Confidence 4455556666666666666666666554
No 289
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=38.48 E-value=44 Score=17.45 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 034447 25 SLKALEIYNSITDESDKV---NVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTP 77 (94)
Q Consensus 25 ~~~a~~~~~~m~~~~~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 77 (94)
.++|.+++..|-...-.| |..|-.-++..+-..|-+..+.++..+-.++|+.|
T Consensus 13 IdKALDFI~~M~tSas~P~sMdESTAKGifKyL~elGvPas~~dv~aRg~qegWn~ 68 (115)
T 2es9_A 13 IEKALDFIGGMNTSASVPHSMDESTAKGILKYLHDLGVPVSPEVVVARGEQEGWNP 68 (115)
T ss_dssp HHHHHHHHHTSCTTCSSCCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhcccccCCCCCCccchHHHHHHHHHHHHcCCCCCHHHHHHhcccccCCh
Confidence 356666666664322222 55666666666666666666666666666666655
No 290
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=37.94 E-value=36 Score=16.38 Aligned_cols=45 Identities=7% Similarity=0.038 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVR 56 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 56 (94)
.++.++..+++-.-.+++.-.+++....|. .+..+|---.+..++
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 356677777777777777777777776654 444455444454444
No 291
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=37.89 E-value=83 Score=20.49 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 034447 8 SISSYSSYIKFLGKNGN--SLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSG 74 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 74 (94)
+..||-.+|....+-.+ .+++..+++.+.+..+ +|...=.-|+..+.+....++...+.+-|.+.+
T Consensus 22 ~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~-~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~ 89 (377)
T 3r88_A 22 SVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNA-RPAQIAAFAVAMTMKAPTADEVGELAGVMLSHA 89 (377)
T ss_dssp --CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhC
Confidence 44689999999988766 5889999999987655 566655566666777778888888888887654
No 292
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.86 E-value=54 Score=18.31 Aligned_cols=52 Identities=8% Similarity=0.122 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 25 SLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 25 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
.+....+++.+.+.|+--|..--...++...+.|. ....+-.++.++|+.++
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~--G~~~I~~eL~~KGI~~~ 97 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGY--GPARIRQELNQKGISRE 97 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHcCCCHH
Confidence 34455566666666665555555555555554432 23455556666666543
No 293
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=37.08 E-value=36 Score=16.80 Aligned_cols=44 Identities=5% Similarity=0.119 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 034447 24 NSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLT 76 (94)
Q Consensus 24 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 76 (94)
.+++|.++.-+-... + ..+|.--.+- -+..|-++.++|.+.|+.
T Consensus 11 Ly~~A~~~V~~~~~a----S----~S~lQR~lrI-GYnRAArlid~lE~~GiV 54 (73)
T 2ve8_A 11 LYDEAVRFVTESRRA----S----ISAVQRKLKI-GYNRAARMIEAMEMAGVV 54 (73)
T ss_dssp THHHHHHHHHHHCCC----C----HHHHHHHHTC-CHHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHHHhcCCc----c----HHHHHHHHcc-ChHHHHHHHHHHHHCCcC
Confidence 467777776555432 2 2334433333 467788999999999875
No 294
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=37.00 E-value=70 Score=19.37 Aligned_cols=34 Identities=9% Similarity=0.175 Sum_probs=21.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 034447 55 VRNGKFESSLKLFDKIKQSGLTPDAVTYNTVYQS 88 (94)
Q Consensus 55 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (94)
...|+.+.+.+.+++....|..|.......++.+
T Consensus 47 l~~gd~~~~~~~~~~al~~g~~~~~i~~~~l~p~ 80 (258)
T 2i2x_B 47 IFEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVG 80 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3457777777777777777766655544455444
No 295
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=36.09 E-value=1e+02 Score=20.97 Aligned_cols=74 Identities=9% Similarity=0.009 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCC
Q 034447 9 ISSYSSYIKFLGKNGN----------SLKALEIYNSITDESDKVNVFICNLILSCLVRNG--KFESSLKLFDKIKQSGLT 76 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~ 76 (94)
...|+.-=..+.+.|+ ++++.+.++++.+.. +=+..+|+----.+.+.+ ++++++..++++.+....
T Consensus 63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~ 141 (567)
T 1dce_A 63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER 141 (567)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc
Confidence 3445544344444455 899999999987643 127778888777788888 779999999999886543
Q ss_pred ccHHHHHH
Q 034447 77 PDAVTYNT 84 (94)
Q Consensus 77 p~~~~~~~ 84 (94)
|...|+.
T Consensus 142 -N~~aW~~ 148 (567)
T 1dce_A 142 -NFHCWDY 148 (567)
T ss_dssp -CHHHHHH
T ss_pred -cccHHHH
Confidence 5555543
No 296
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=34.36 E-value=98 Score=20.28 Aligned_cols=59 Identities=10% Similarity=-0.003 Sum_probs=45.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCC-----CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 14 SYIKFLGKNGNSLKALEIYNSITDESD-----KVNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 14 ~ll~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
-+...|...|++.+|..++.++.+.-- ..-...|-.-+..|...++..++...+..-..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 467889999999999988888865211 13455677778889999999999999987653
No 297
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=34.29 E-value=56 Score=20.59 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNG--KFESSLKLFDKIKQ 72 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~ 72 (94)
....+|.=|-..|+.+++...++++....+.|..+. .+|......+ .-+.+-.++..+..
T Consensus 5 ~~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~--~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 5 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPV--LAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHH--HHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHH--HHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 346788889999999999999999875443333332 2233223333 22334455566653
No 298
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=34.04 E-value=71 Score=18.55 Aligned_cols=44 Identities=5% Similarity=0.100 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 26 LKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 26 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
.....+.+.++.. +.|..-.--.|.|+.+.|++++|.++.+++.
T Consensus 16 ~~~~~~~~~LR~q--rHdf~NkLqvI~GLlql~~ydea~~yI~~~~ 59 (192)
T 1ixm_A 16 ALTNELIHLLGHS--RHDWMNKLQLIKGNLSLQKYDRVFEMIEEMV 59 (192)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444321 1344444456667777777777776665553
No 299
>2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium bifidum} PDB: 2eac_A* 2ead_A* 2eae_A*
Probab=33.95 E-value=1.4e+02 Score=21.98 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 44 VFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 44 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
-.+..-.+..+++.++.++|.++++.+.+.++.||
T Consensus 722 Gws~aw~~~~~ARL~dg~~A~~~l~~ll~~~~~~N 756 (899)
T 2eab_A 722 GWAIGQRINSWARTGDGNTTYQLVELQLKNAMYAN 756 (899)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSBCTT
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcc
Confidence 44444667778999999999999999988776664
No 300
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=33.90 E-value=29 Score=22.09 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 60 FESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
..++++.+.+|.+.|+.|....+....+.+..|+
T Consensus 228 ~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~ 261 (420)
T 4hw8_A 228 VVKNAERLQKWYDKGYLPKAATHDVMIGLFKEGK 261 (420)
T ss_dssp HHHHHHHHHHHHHTTSSCSSCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCCCCCCcchHHHHhhcCc
Confidence 3568888999988888776555666666666665
No 301
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=33.74 E-value=30 Score=14.23 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=14.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 034447 50 ILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 50 li~~~~~~g~~~~a~~~~~~m~ 71 (94)
.+.-|-..|+.++|..+-++|.
T Consensus 8 W~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 8 WAEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 3455666677777777666664
No 302
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=32.64 E-value=58 Score=17.14 Aligned_cols=31 Identities=6% Similarity=-0.008 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 034447 26 LKALEIYNSITDESDKVNVFICNLILSCLVR 56 (94)
Q Consensus 26 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 56 (94)
-.+.++.+++..-|+.|+-.+..-++.-|..
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~ 56 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQ 56 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3456667777777777766555544444443
No 303
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Probab=32.49 E-value=34 Score=21.41 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 61 ESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 61 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
.++++.+.+|.+.|+.|....+....+.+..|+
T Consensus 190 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~ 222 (382)
T 2gha_A 190 IKGVKLLKRLVDEGILDPSDNYQIMDSMFREGQ 222 (382)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCC
Confidence 578888889988887654445666666666664
No 304
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=31.84 E-value=55 Score=16.62 Aligned_cols=63 Identities=8% Similarity=0.046 Sum_probs=35.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 034447 15 YIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLTPDAV 80 (94)
Q Consensus 15 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 80 (94)
-++++++.-.++...++++++..- .+..-=..--..-....+-++...+.+.|.+.|+.|+..
T Consensus 16 ~LRA~arel~le~Lee~leKl~~V---veERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~~eeL 78 (86)
T 3nr7_A 16 TLRAQARESTLETLEEMLEKLEVV---VNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNEL 78 (86)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 356777777777777777666421 000000000111122234456667888899999998664
No 305
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=31.75 E-value=78 Score=18.65 Aligned_cols=42 Identities=12% Similarity=-0.087 Sum_probs=33.7
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCH
Q 034447 19 LGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKF 60 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 60 (94)
..-.|+-+.+.+++++....|..|....-+.++.+.-+-|+.
T Consensus 12 al~~~d~~~~~~~~~~al~~g~~~~~ii~~~l~p~m~~VG~l 53 (215)
T 3ezx_A 12 AIVNQNVAGTPELCKEALAAGVPALDIITKGLSVGMKIVGDK 53 (215)
T ss_dssp HHHTTCTTHHHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 445688899999999999999988888888888887766643
No 306
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=30.83 E-value=88 Score=18.66 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=40.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCc-----------------hHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 034447 18 FLGKNGNSLKALEIYNSITDESDKV-----------------NVFICNLILSCLVRNGKFESSLKLFDK 69 (94)
Q Consensus 18 ~~~~~g~~~~a~~~~~~m~~~~~~p-----------------~~~t~~~li~~~~~~g~~~~a~~~~~~ 69 (94)
.|-+..++..|...++...+..+.. -..-|+-+-.-+.+.|+.++|+..+..
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 3456789999999999998655542 246677778888999999999987754
No 307
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=30.02 E-value=89 Score=20.24 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 034447 11 SYSSYIKFLGKNGNSLKALEIYNSITDESD 40 (94)
Q Consensus 11 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 40 (94)
....+|.=|-..++.+++...++++..-..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~ 85 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEM 85 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchh
Confidence 345778888888999999999988865433
No 308
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=29.92 E-value=40 Score=16.40 Aligned_cols=27 Identities=7% Similarity=0.247 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHc-CCCccHHHHHHHHH
Q 034447 60 FESSLKLFDKIKQS-GLTPDAVTYNTVYQ 87 (94)
Q Consensus 60 ~~~a~~~~~~m~~~-g~~p~~~~~~~ll~ 87 (94)
.++|...|.+|.++ ++.| ..+|.-.+.
T Consensus 14 ~eea~~~F~~LL~e~~V~~-~~tWe~~~~ 41 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPS-NASWEQAMK 41 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCT-TCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCC-CCCHHHHHH
Confidence 45566666665543 3333 334544443
No 309
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.85 E-value=79 Score=17.85 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=16.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 034447 16 IKFLGKNGNSLKALEIYNSITDESDKV 42 (94)
Q Consensus 16 l~~~~~~g~~~~a~~~~~~m~~~~~~p 42 (94)
|...++.|+.+....+++.+...|..+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 445566677777777766655544443
No 310
>2hm2_Q ASC2, pyrin-only protein 1, PAAD-only; pyrin domain, six helix bundle, apoptosis; NMR {Homo sapiens}
Probab=29.65 E-value=29 Score=17.52 Aligned_cols=28 Identities=4% Similarity=0.104 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 45 FICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 45 ~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
..-+.|+..|....-++-+.++|++|..
T Consensus 51 dla~lLv~~y~~~~A~~vt~~if~~mn~ 78 (89)
T 2hm2_Q 51 DLTDKLVASYYEDYAAELVVAVLRDMRM 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHcCH
Confidence 4445667777777788888888888854
No 311
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.64 E-value=53 Score=15.80 Aligned_cols=47 Identities=6% Similarity=0.050 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 034447 24 NSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 24 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 75 (94)
.++++.+-+.+|- |++-...+--..-...|+++.|++.+=.|...+.
T Consensus 17 ~~~~~v~~L~~MF-----P~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~~ 63 (67)
T 2dhy_A 17 EFNQAMDDFKTMF-----PNMDYDIIECVLRANSGAVDATIDQLLQMNLESG 63 (67)
T ss_dssp CSHHHHHHHHHHC-----SSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHC-----CCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCC
Confidence 3566677777774 4433333322223667899999999888876543
No 312
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=29.57 E-value=1.1e+02 Score=19.56 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=48.3
Q ss_pred CcccC-CccHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 034447 1 MQQHG-KTSISSYSSYIKFLGKNGN--SLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 1 M~~~~-~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 75 (94)
||..- ++....+..+|.-..+-++ .+++..+++.+.+..+ +|...=.-|+....+....++..-+.+-|.+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~i~kl~~g~~Lt~eEa~~~~~~il~g~~-~~~QiaAfL~alr~kget~eEiag~~~am~~~~~ 77 (345)
T 1khd_A 1 MQATLIKPTIFTHQPILEKLFKSQSMTQEESHQLFAAIVRGEL-EDSQLAAALISMKMRGERPEEIAGAASALLADAQ 77 (345)
T ss_dssp -----------CCHHHHHHHHTTCCCCHHHHHHHHHHHTTTCS-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSC
T ss_pred CCccccCccccCHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 34444 4555556667776665554 6888999999987554 6666666677777888889999999999988654
No 313
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=29.36 E-value=2e+02 Score=22.44 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCC---------------HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 034447 12 YSSYIKFLGKNGN---------------SLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGLT 76 (94)
Q Consensus 12 ~~~ll~~~~~~g~---------------~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 76 (94)
=+.|++++++.|. .++-.+.|.++.+.==.-|....--.+..-...+++-.|++++.++.++.
T Consensus 1237 k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k-- 1314 (1354)
T 3lxu_X 1237 KNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK-- 1314 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 3567777777442 34455566666543111122222222222336789999999999998765
Q ss_pred ccHHHHHHHHHH-hhccc
Q 034447 77 PDAVTYNTVYQS-DHITW 93 (94)
Q Consensus 77 p~~~~~~~ll~~-~~~~~ 93 (94)
|....|..+++. -..||
T Consensus 1315 ~~~~~~~~~~~~~~~l~w 1332 (1354)
T 3lxu_X 1315 RTRDHFVELAAINGALGH 1332 (1354)
T ss_dssp CCHHHHHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHHHHcCC
Confidence 678888888776 44444
No 314
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}
Probab=29.23 E-value=41 Score=21.91 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 60 FESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
..++++.+.+|.+.|+.|....+....+.+..|+
T Consensus 188 ~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~ 221 (507)
T 3oai_A 188 AKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE 221 (507)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCCCCcchhHHHHHHhcCC
Confidence 4578888999998888766566776666676665
No 315
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=28.99 E-value=89 Score=18.14 Aligned_cols=46 Identities=7% Similarity=0.039 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVR 56 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 56 (94)
..++.++..+++-.-.+++.-.+++....|. .+..+|---++.+++
T Consensus 112 ~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 112 DGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELAR 157 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3445555555555555555555555555443 344444444444433
No 316
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=28.77 E-value=50 Score=21.63 Aligned_cols=33 Identities=6% Similarity=0.023 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 61 ESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 61 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
.++++.+.+|.+.|+.|....|+...+.+..|+
T Consensus 189 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk 221 (465)
T 2zxt_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE 221 (465)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCCCCCcchHHHHHHCCC
Confidence 467788888888787654445665555566554
No 317
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=28.60 E-value=43 Score=21.26 Aligned_cols=33 Identities=6% Similarity=0.023 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 61 ESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 61 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
.++++.+.+|.+.|+.|....++...+.+..|+
T Consensus 189 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~ 221 (421)
T 1mh3_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE 221 (421)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCCCCCCCchhHHHHHHCCC
Confidence 467888888888887664456666666666664
No 318
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=28.57 E-value=16 Score=22.46 Aligned_cols=65 Identities=15% Similarity=0.078 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHHhcC---------CHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNG---------NSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g---------~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
...-|.++-.+|++.| +++.-.++++...+.|++- -...|+.+|+--.-.-+++++.++++.+++
T Consensus 172 ~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIIDk~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 172 HRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIIDKASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp THHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBCTTTCCBCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceeccCCCCCCCHHHHHHHHHHHHH
Confidence 4455677777787776 4566677777777777752 445677777644444578888888887754
No 319
>3gna_A RAG-1, V(D)J recombination-activating protein 1; DNA recombination, DNA-binding, endonucle hydrolase; 2.40A {Mus musculus} PDB: 3gnb_A
Probab=28.40 E-value=63 Score=16.24 Aligned_cols=28 Identities=11% Similarity=0.086 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 034447 9 ISSYSSYIKFLGKNGNSLKALEIYNSIT 36 (94)
Q Consensus 9 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 36 (94)
.+..+.++-++-...+-.+|-++-..|+
T Consensus 61 svCltLfLlalRa~NeHrqAdELeA~mq 88 (96)
T 3gna_A 61 AVCLTLFLLALRARNEHRQADELEAIMQ 88 (96)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHccccccchHHHHHHHc
Confidence 3344444444444444444444433333
No 320
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=28.07 E-value=44 Score=21.79 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 60 FESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
..++++.+.+|.+.|+.|....+....+.+..|+
T Consensus 190 ~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~ 223 (475)
T 3n94_A 190 AKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE 223 (475)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCCCCCChhHHHHHHHcCC
Confidence 4578888999998888765556666666676665
No 321
>4ewi_A Nacht, LRR and PYD domains-containing protein 4; NLR proteins, death domain, pyrin domain, NLRP4, ASC, innate system, inflammasome, apoptosis; 2.28A {Homo sapiens}
Probab=28.04 E-value=33 Score=18.31 Aligned_cols=31 Identities=10% Similarity=0.110 Sum_probs=22.6
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 42 VNVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 42 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
+...+|.+.+..+-+.+.-+-+.++-+++..
T Consensus 66 ~~~~A~~vtl~if~~mn~~dL~e~~~~e~~~ 96 (113)
T 4ewi_A 66 EEQQAWNITLRIFQKMDRKDLCMKVMRERTG 96 (113)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 4556778888888888888777777666643
No 322
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.73 E-value=45 Score=21.90 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 60 FESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
..++++.+.+|.+.|+.|....|....+.+..|+
T Consensus 202 ~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk 235 (471)
T 3mq9_A 202 AKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE 235 (471)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCCCCCChHHHHHHHHcCC
Confidence 4578888999998888766566776667676665
No 323
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=27.63 E-value=47 Score=16.67 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHc-CCCccHHHHHHHHH
Q 034447 60 FESSLKLFDKIKQS-GLTPDAVTYNTVYQ 87 (94)
Q Consensus 60 ~~~a~~~~~~m~~~-g~~p~~~~~~~ll~ 87 (94)
.+++...|.+|.++ +|.| ..||...+.
T Consensus 16 ~eea~~~Fk~LL~e~~V~p-~~tWe~~~~ 43 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSA-FSTWEKELH 43 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCS-SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCC-CCCHHHHHH
Confidence 45666666666543 4443 334554443
No 324
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=27.47 E-value=87 Score=17.53 Aligned_cols=29 Identities=24% Similarity=0.207 Sum_probs=14.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 034447 50 ILSCLVRNGKFESSLKLFDKIKQSGLTPD 78 (94)
Q Consensus 50 li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 78 (94)
.+...+..|+.+.-.++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 33444455555554555555555554443
No 325
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=27.45 E-value=16 Score=22.63 Aligned_cols=65 Identities=15% Similarity=0.133 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHhcC---------CHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 034447 8 SISSYSSYIKFLGKNG---------NSLKALEIYNSITDESDKV-NVFICNLILSCLVRNGKFESSLKLFDKIKQ 72 (94)
Q Consensus 8 ~~~~~~~ll~~~~~~g---------~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 72 (94)
...-|.++-.+|++.| +++.-.++++...+.|++- -...|+.+|+--.-.-+++++.+++..+++
T Consensus 195 ~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIIDk~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 195 HEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIIDKETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp THHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBCTTTCCBCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceeccCCCCCCCHHHHHHHHHHHHH
Confidence 4455677777888776 4566777777777777752 445677777644444578888888877754
No 326
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.39 E-value=54 Score=15.16 Aligned_cols=38 Identities=13% Similarity=0.269 Sum_probs=24.5
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCC--HHHHHHHHHHHH
Q 034447 29 LEIYNSITDESDKVNVFICNLILSCLVRNGK--FESSLKLFDKIK 71 (94)
Q Consensus 29 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~--~~~a~~~~~~m~ 71 (94)
.+.++.+.+.|+.+... ..+..+.|. ++.|.+.+.+|.
T Consensus 10 ~qmlq~L~eMGFd~era-----e~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 10 RQMLQELVNAGCDQEMA-----GRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHHHCCHHHH-----HHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHH-----HHHHHHhCcccHHHHHHHHHHhc
Confidence 34566777777766533 334455554 888888888873
No 327
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=27.20 E-value=99 Score=18.09 Aligned_cols=52 Identities=12% Similarity=0.138 Sum_probs=33.0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHH-----------HHHHhhCCCCchHHHHHHHHHHHHhc
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEI-----------YNSITDESDKVNVFICNLILSCLVRN 57 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~-----------~~~m~~~~~~p~~~t~~~li~~~~~~ 57 (94)
.|....|+..+...+..|.+.+.... .+.+...+-.++...|...|+.|...
T Consensus 110 ~p~~~aY~~~l~~~a~~~~~~~~~aAl~pc~~~Y~~ig~~l~~~~~~~~~~~y~~WI~~y~~~ 172 (221)
T 3ibx_A 110 TLANKSYTSYMLAEGFKGSIKEVAAAVLSCGWSYLVIAQNLSQIPNALEHAFYGHWIKGYSSK 172 (221)
T ss_dssp CHHHHHHHHHHHHHHHHSCHHHHHHHTHHHHHHHHHHHHHHTCSSSTTTCTTTHHHHHHTTSH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHhCCH
Confidence 56778899999988888887766432 22333222112235678888888743
No 328
>4hs7_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: P33; 2.60A {Staphylococcus aureus subsp}
Probab=27.06 E-value=44 Score=21.21 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 60 FESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
..++++.+.++.+.|+.|...++......+..|+
T Consensus 228 ~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~ 261 (420)
T 4hs7_A 228 VVKNAERLQKWYDKGYLPKAATHDVMIGLFKEGK 261 (420)
T ss_dssp HHHHHHHHHHHHHTTSSCSSCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCCcccccchhhhhhccCc
Confidence 3467788888888888776667777777676665
No 329
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A*
Probab=26.59 E-value=48 Score=20.83 Aligned_cols=34 Identities=12% Similarity=-0.035 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 60 FESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
..++++.+.+|.+.|+.|....+....+.+..|+
T Consensus 208 ~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~ 241 (397)
T 2zyo_A 208 AVQGMNEVQKWFTEARLPQSLKADTVNGLFKSGK 241 (397)
T ss_dssp HHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCC
Confidence 3577888888888887653345665666666654
No 330
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=26.56 E-value=62 Score=22.23 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 034447 25 SLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQSGL 75 (94)
Q Consensus 25 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 75 (94)
-+++..+|+++.+ +.+-|.++++-+...|+.+-..++.-++.+.|.
T Consensus 518 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (591)
T 3i3l_A 518 DDEARQIFQDLAE-----EEFGYKTLVKRLGAVGRQELSTQIVVRLMEAGL 563 (591)
T ss_dssp CHHHHHHHHHHHH-----HCCCHHHHHHHHHTTTCTTTHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHH-----HhhhHHHHHHHHhhhhhhhhhHHHHHHHHHhcc
Confidence 3678889999986 446789999999999999988888777766664
No 331
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=26.54 E-value=53 Score=14.75 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 25 SLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 25 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
.++-.+.+.+|- |+...+.+-=---...|+.+.|.+++=+|.
T Consensus 4 ~e~~v~~L~EMF-----P~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~ 45 (49)
T 1otr_A 4 HESKLSILMDMF-----PAISKSKLQVHLLENNNDLDLTIGLLLKEN 45 (49)
T ss_dssp HHHHHHHHHHHC-----SSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred hHHHHHHHHHHC-----CCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 345566666774 333333221111256689999988876663
No 332
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=26.53 E-value=98 Score=17.81 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh-CC-----------------------CCch-HHHHHHHHHHHHhcCCHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITD-ES-----------------------DKVN-VFICNLILSCLVRNGKFESSL 64 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~-----------------------~~p~-~~t~~~li~~~~~~g~~~~a~ 64 (94)
.++..+-+++-..|++..|...|++-.. +. ...+ ..-|- +-.||.+-+++++|+
T Consensus 64 ~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkyk-ia~C~~~l~~~~~Ai 142 (167)
T 3ffl_A 64 QLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYK-LAECYTVLKQDKDAI 142 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHH-HHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHH-HHHHHHHHCCHHHHH
Confidence 4566777888899999999999988421 00 1111 23344 678889999999999
Q ss_pred HHHHHHHHcCCCc
Q 034447 65 KLFDKIKQSGLTP 77 (94)
Q Consensus 65 ~~~~~m~~~g~~p 77 (94)
.+++....+.-.|
T Consensus 143 ~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 143 AILDGIPSRQRTP 155 (167)
T ss_dssp HHHHTSCGGGCCH
T ss_pred HHHhcCCchhcCH
Confidence 9999876554444
No 333
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=26.28 E-value=93 Score=17.47 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 034447 25 SLKALEIYNSITDESDKVNVFICNLILSCLVRNG---KFESSLKLFDKIKQSG 74 (94)
Q Consensus 25 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~g 74 (94)
+..+.+-|.+-...+- ++..+..-+--++++++ ++++++.++++..+..
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~ 65 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG 65 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 4555666665555444 56666666677888888 7779999999988875
No 334
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}
Probab=26.27 E-value=49 Score=21.91 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 60 FESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
..++++.+.++.+.|+.|....+....+.+..|+
T Consensus 188 ~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~ 221 (500)
T 3ob4_A 188 AKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE 221 (500)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCCCCCChhHHHHHHHcCC
Confidence 4578888999998888766566776677776665
No 335
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=26.26 E-value=49 Score=22.00 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 60 FESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
..++++.+.++.+.|+.|....++...+.+..|+
T Consensus 189 ~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~ 222 (523)
T 3py7_A 189 AKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE 222 (523)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCCCCCCCChHHHHHHHhcCC
Confidence 4578888999998888766566776667676665
No 336
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*
Probab=26.14 E-value=50 Score=21.42 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 60 FESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
..++++.+.+|.+.|+.|....+....+.+..|+
T Consensus 186 ~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~ 219 (461)
T 3csg_A 186 AKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE 219 (461)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCCCCCCchhHHHHHhcCC
Confidence 3577888888888887654445666666666654
No 337
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermoph protein, periplasmic binding protein, sugar binding protein; HET: MLR; 1.95A {Thermus thermophilus}
Probab=25.90 E-value=44 Score=20.94 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=22.1
Q ss_pred HHHHHHHHHH-HHcCCCccHHHHHHHHHHhhccc
Q 034447 61 ESSLKLFDKI-KQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 61 ~~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
.++++.+.+| .+.|+.|....+....+.+..|+
T Consensus 193 ~~al~~~~~l~~~~g~~~~~~~~~~~~~~f~~G~ 226 (386)
T 2gh9_A 193 EKALQFIKDLRFKYNLVPEGVDYGVADGAFKDGA 226 (386)
T ss_dssp HHHHHHHHHHHHTSCCSCTTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCcCCCCCChHHHHHHHhCCC
Confidence 4678888888 77787664445666666666554
No 338
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=25.69 E-value=50 Score=21.33 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 60 FESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
..++++.+.++.+.|+.+....++...+.+..|+
T Consensus 188 ~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~ 221 (449)
T 3iot_A 188 AKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE 221 (449)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCCCCCChhHHHHHHHcCC
Confidence 4578888888888888765556666666666665
No 339
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=25.55 E-value=90 Score=17.10 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 034447 13 SSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRNGKFESSLK 65 (94)
Q Consensus 13 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~ 65 (94)
--.|...+..++.+-|.++++-..+.| +...|.+.+-.|...=+++-+++
T Consensus 36 kDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 36 KDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 345566667788888888888777765 56667777777776666666654
No 340
>1nnv_A Hypothetical protein HI1450; structure 2 function project, S2F, structural genomics, unknown function; NMR {Haemophilus influenzae} SCOP: d.17.7.1
Probab=25.47 E-value=85 Score=16.75 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhCCCCc-hHHHHHH
Q 034447 25 SLKALEIYNSITDESDKV-NVFICNL 49 (94)
Q Consensus 25 ~~~a~~~~~~m~~~~~~p-~~~t~~~ 49 (94)
.+.|-.+|-+|...++.| |+..||.
T Consensus 17 id~AYDiFLE~A~dNL~paDillFnl 42 (110)
T 1nnv_A 17 IDIAYDIFLEMAGENLDPADILLFNL 42 (110)
T ss_dssp HHHHHHHHHHHCSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHH
Confidence 356777788887777776 5555553
No 341
>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} SCOP: c.94.1.1 PDB: 1urg_A* 1urd_A*
Probab=25.47 E-value=69 Score=20.16 Aligned_cols=34 Identities=3% Similarity=-0.145 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHc-CCCccHHHHHHHHHHhhccc
Q 034447 60 FESSLKLFDKIKQS-GLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 60 ~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~ 93 (94)
..++++.+.+|.++ |+.|....+....+.+..|+
T Consensus 212 ~~~al~~~~~l~~~~g~~~~~~~~~~~~~~f~~G~ 246 (402)
T 1urs_A 212 AVQAYTLMRDMVSKYHWMTPSTNGSIAKAEFLAGK 246 (402)
T ss_dssp HHHHHHHHHHHHHTSCSCCTTCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCcCCCCCCchhhHHHHhcCC
Confidence 35677888888775 77764445666666666665
No 342
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=25.35 E-value=77 Score=16.22 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 034447 26 LKALEIYNSITDESDKVNVFICNLILSCL 54 (94)
Q Consensus 26 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 54 (94)
..+.++|..++..+..|+...+-++..+.
T Consensus 34 ~Ga~~ay~rL~~~~~~~c~~~L~aL~gAi 62 (93)
T 3bqs_A 34 VGSKEAFLRIWENDSSVCMSELYALEGAV 62 (93)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 45778899999889999988888875554
No 343
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=25.14 E-value=54 Score=21.44 Aligned_cols=33 Identities=6% Similarity=0.023 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 61 ESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 61 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
.++++.+.+|.+.|+.|....++...+.+..|+
T Consensus 189 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~ 221 (487)
T 1hsj_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE 221 (487)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHCCCCCCCCCchhHHHHHHcCC
Confidence 467888888888887654445666666666664
No 344
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=24.83 E-value=55 Score=21.43 Aligned_cols=33 Identities=6% Similarity=0.023 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 61 ESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 61 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
.++++.+.+|.+.|+.|....++...+.+..|+
T Consensus 190 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk 222 (463)
T 2xz3_A 190 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE 222 (463)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCCCCCCcchHHHHHHcCC
Confidence 567888888888887664445666666666664
No 345
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=24.66 E-value=1.3e+02 Score=18.55 Aligned_cols=67 Identities=12% Similarity=0.193 Sum_probs=47.6
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH---hcCCHHHHHHHHH-HHHH
Q 034447 6 KTSISSYSSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLV---RNGKFESSLKLFD-KIKQ 72 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~---~~g~~~~a~~~~~-~m~~ 72 (94)
.|...++.-++..+++.=.++.+.++|+.....|...-....-+++..+. -..+.++...++. .+.+
T Consensus 186 ~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~~d~~~~l~~l~~~lp~ 256 (310)
T 3hzj_A 186 EAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPK 256 (310)
T ss_dssp CGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHTHHHH
T ss_pred ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCcc
Confidence 67778888899999988889999999999998876544444444444332 1247888888886 4443
No 346
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=24.57 E-value=79 Score=16.10 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=40.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHH--cCCCc
Q 034447 15 YIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLV-----RNGKFESSLKLFDKIKQ--SGLTP 77 (94)
Q Consensus 15 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~-----~~g~~~~a~~~~~~m~~--~g~~p 77 (94)
-+..+- .|++-+|.+++++.=...-.|....|..+|.... +.|+. |.+++++-.. +++.|
T Consensus 8 ~~~lfn-~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~~ 74 (94)
T 2cwy_A 8 VLGLWR-AGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLPC 74 (94)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCCS
T ss_pred HHHHHh-CCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCCC
Confidence 344444 4999999999988754443366777888888753 66887 7777777654 34444
No 347
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.55 E-value=1.5e+02 Score=19.42 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCc---hHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 12 YSSYIKFLGKNGNSLKALEIYNSITDE--SDKV---NVFICNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 12 ~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
...|...|-+.|++.+|.+++.++... +.-. =+..|.-.++.|...+++..|..++++..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345677788899999999999998632 2211 24577788899999999999999998874
No 348
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=24.22 E-value=56 Score=21.65 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 60 FESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
..++++.+.+|.+.|+.|....+....+.+..|+
T Consensus 188 ~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~ 221 (581)
T 3o3u_N 188 AKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE 221 (581)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCcCCCCCChhhHhhHHhcCC
Confidence 4578888899988888766556666666666665
No 349
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=24.14 E-value=76 Score=15.75 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 034447 47 CNLILSCLVRNGKFESSLKLFDKIK 71 (94)
Q Consensus 47 ~~~li~~~~~~g~~~~a~~~~~~m~ 71 (94)
...+.+-|+-.|+++.|..+|+...
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~ 39 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVL 39 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHH
Confidence 3345566677777777776665543
No 350
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=23.66 E-value=90 Score=16.42 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=13.6
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 034447 19 LGKNGNSLKALEIYNSITD 37 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~~ 37 (94)
.++.|++++|.+.+++-.+
T Consensus 30 ~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 30 AAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 4577888888887776543
No 351
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=23.65 E-value=1.3e+02 Score=18.16 Aligned_cols=82 Identities=6% Similarity=-0.072 Sum_probs=45.0
Q ss_pred CccHHHHHHHHHHHHhc-CCHHHHHHH-----------HHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 034447 6 KTSISSYSSYIKFLGKN-GNSLKALEI-----------YNSITDESDKVNVFICNLILSCLVRNGKFESSLKLFDKIKQS 73 (94)
Q Consensus 6 ~p~~~~~~~ll~~~~~~-g~~~~a~~~-----------~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 73 (94)
.|....|+..|...+.. |.+.++... .+.+...+-.++...|...|+.|. .+-.+.+..+.+.+.+.
T Consensus 126 ~p~~~aYt~~ll~~a~~~g~~~~~laAl~PC~w~Y~eig~~l~~~~~~~~~~~Y~~WI~~Y~-~ef~~~v~~~~~~ld~~ 204 (248)
T 3no6_A 126 PPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTSKWFQFYS-TEMDELVDVFDQLMDRL 204 (248)
T ss_dssp CHHHHHHHHHHHHHHHHCSSTHHHHHHHTHHHHHHHHHHHHHHHCTTCCTTSTTHHHHHHHH-HHTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 56778899999988888 887665432 233333332123456888899998 43333333333333333
Q ss_pred CCCccHHHHHHHHHH
Q 034447 74 GLTPDAVTYNTVYQS 88 (94)
Q Consensus 74 g~~p~~~~~~~ll~~ 88 (94)
+...+......+.+.
T Consensus 205 ~~~~s~~~~~~l~~~ 219 (248)
T 3no6_A 205 TKHCSETEKKEIKEN 219 (248)
T ss_dssp TTTCCHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHH
Confidence 323344444444444
No 352
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=23.26 E-value=79 Score=16.50 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhCCCCchHHH
Q 034447 27 KALEIYNSITDESDKVNVFI 46 (94)
Q Consensus 27 ~a~~~~~~m~~~~~~p~~~t 46 (94)
...+-.++++..|+.||+.-
T Consensus 21 ~ieekinELk~dG~ePDIiL 40 (103)
T 2pk8_A 21 EIEEKMNELKMDGFNPDIIL 40 (103)
T ss_dssp HHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHhcCCCCCeEE
Confidence 34455677788888888643
No 353
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=22.90 E-value=63 Score=21.16 Aligned_cols=33 Identities=6% Similarity=0.023 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 61 ESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 61 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
.++++.+.++.+.|+.|....++...+.+..|+
T Consensus 204 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~ 236 (477)
T 2vgq_A 204 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE 236 (477)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCCCCCchHHHHHHHcCC
Confidence 567888888888887654445665566666664
No 354
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=22.79 E-value=17 Score=24.87 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHhhCCCCchHHHH----HHHHHHHHhcC-CHHHHHH
Q 034447 24 NSLKALEIYNSITDESDKVNVFIC----NLILSCLVRNG-KFESSLK 65 (94)
Q Consensus 24 ~~~~a~~~~~~m~~~~~~p~~~t~----~~li~~~~~~g-~~~~a~~ 65 (94)
.+-.+.++|+++.++|+.||+.|= ...+.+|+-.| -++++.+
T Consensus 235 ~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~ 281 (551)
T 1x87_A 235 LVGNAAEVLPRLVETGFVPDVLTDQTSAHDPLNGYIPAGLTLDEAAE 281 (551)
T ss_dssp EESCHHHHHHHHHHTTCCCSEECCCSCTTCTTTTCCCTTCCHHHHHH
T ss_pred EeccHHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHH
Confidence 345688999999999999887652 22233666666 4555544
No 355
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=22.77 E-value=92 Score=16.22 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 034447 45 FICNLILSCLVRNGKFESSLKLFD 68 (94)
Q Consensus 45 ~t~~~li~~~~~~g~~~~a~~~~~ 68 (94)
..+.-....+.+.|.+++|+...+
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~ 39 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHR 39 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHH
Confidence 344455566666666666665443
No 356
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=22.69 E-value=63 Score=21.36 Aligned_cols=33 Identities=6% Similarity=0.023 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 61 ESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 61 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
.++++.+.+|.+.|+.|....++...+.+..|+
T Consensus 190 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk 222 (509)
T 1r6z_P 190 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE 222 (509)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHcCC
Confidence 577888888888887664445666666666654
No 357
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=22.48 E-value=95 Score=16.26 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=12.6
Q ss_pred HHhcCCHHHHHHHHHHHh
Q 034447 19 LGKNGNSLKALEIYNSIT 36 (94)
Q Consensus 19 ~~~~g~~~~a~~~~~~m~ 36 (94)
.++.|++++|.+.+++-.
T Consensus 28 ~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 28 QAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 456778888777776654
No 358
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=22.38 E-value=18 Score=24.85 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHhhCCCCchHHHH----HHHHHHHHhcC-CHHHHHH
Q 034447 24 NSLKALEIYNSITDESDKVNVFIC----NLILSCLVRNG-KFESSLK 65 (94)
Q Consensus 24 ~~~~a~~~~~~m~~~~~~p~~~t~----~~li~~~~~~g-~~~~a~~ 65 (94)
.+-.+.++|+++.++|+.||+.|= ...+.+|+-.| -++++.+
T Consensus 236 ~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~ 282 (552)
T 2fkn_A 236 LLGNAAEVHHTLLNRGVKIDIVTDQTSAHDPLIGYVPEGYSLDEADR 282 (552)
T ss_dssp EESCHHHHHHHHHTTTCCCSEECCCSCTTCTTTTCCCTTCCHHHHHH
T ss_pred EeccHHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHH
Confidence 345688999999999999887652 22233676666 4555544
No 359
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Probab=22.33 E-value=65 Score=21.55 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 60 FESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
..++++.+.+|.+.|+.|....+....+.+..|+
T Consensus 190 ~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk 223 (539)
T 3h3g_A 190 AKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE 223 (539)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCCCChhHHHHHHHCCC
Confidence 4578888999988888765556666666676665
No 360
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.20 E-value=84 Score=17.66 Aligned_cols=19 Identities=21% Similarity=-0.011 Sum_probs=10.8
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 034447 16 IKFLGKNGNSLKALEIYNS 34 (94)
Q Consensus 16 l~~~~~~g~~~~a~~~~~~ 34 (94)
|...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4455556666666655554
No 361
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=21.75 E-value=68 Score=21.42 Aligned_cols=33 Identities=6% Similarity=0.023 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 61 ESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 61 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
.++++.+.+|.+.|+.|....|+.....+..|+
T Consensus 189 ~~al~~l~~L~~~g~~~~~~~~~~~~~~f~~Gk 221 (494)
T 1y4c_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE 221 (494)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCCCCCChhHHHHHHHCCC
Confidence 467888888888887664445666666666654
No 362
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=21.65 E-value=68 Score=21.36 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 60 FESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
..++++.+.+|.+.|+.+....+....+.+..|+
T Consensus 189 ~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk 222 (522)
T 3mp6_A 189 AKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE 222 (522)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCCCChHHHhhHHhcCC
Confidence 3478888999988888765556666666666665
No 363
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.00 E-value=2e+02 Score=19.32 Aligned_cols=60 Identities=8% Similarity=0.082 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--------hHHHHHHHHHH-HHhcCCHHHHHHHHHH
Q 034447 10 SSYSSYIKFLGKNGNSLKALEIYNSITDESDKV--------NVFICNLILSC-LVRNGKFESSLKLFDK 69 (94)
Q Consensus 10 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p--------~~~t~~~li~~-~~~~g~~~~a~~~~~~ 69 (94)
...|.+.+.|-+.+.+..+..+++.+...+..| ..++|.-.+.- +...+++.+|.+-+.+
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~ 245 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNE 245 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHH
Confidence 456889999999999999999999998776522 45555555443 2456677777765544
No 364
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=20.98 E-value=98 Score=15.84 Aligned_cols=29 Identities=10% Similarity=0.032 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 034447 27 KALEIYNSITDESDKVNVFICNLILSCLV 55 (94)
Q Consensus 27 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 55 (94)
.|.+.|..+++.|..++...+-++..+..
T Consensus 35 Ga~~ay~rLk~~~~~~~~~~L~aL~gAi~ 63 (93)
T 3mab_A 35 GSKEAFLRIWENDSSVCMSELYALEGAVQ 63 (93)
T ss_dssp CHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHHc
Confidence 46778888888888899888888777654
No 365
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=20.90 E-value=1.5e+02 Score=17.96 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 034447 13 SSYIKFLGKNGNSLKALEIYNSITDESDKVNVFICNLILSCLVRN-GKFESSLKLFDKIK 71 (94)
Q Consensus 13 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~-g~~~~a~~~~~~m~ 71 (94)
--+....-+.++++++...++++...+...+..--|-+-.+|-.. |....+++++..+.
T Consensus 9 v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissie 68 (234)
T 2br9_A 9 VYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIE 68 (234)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345566677899999999999998877777777777777776433 34445555555443
No 366
>3osq_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia coli}
Probab=20.80 E-value=71 Score=22.33 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhccc
Q 034447 60 FESSLKLFDKIKQSGLTPDAVTYNTVYQSDHITW 93 (94)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (94)
..++++.+.++.+.|+.|...+|+...+.+..|+
T Consensus 470 ~~eal~~l~~l~~~G~~~~~~~~~~~~~~F~sGk 503 (661)
T 3osq_A 470 AKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE 503 (661)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCCCCCCCCchHHHHHHHCCC
Confidence 3567777788877777665566666666666654
No 367
>2km6_A Nacht, LRR and PYD domains-containing protein 7; NLRP7, pyrin domain, innate immune system, NALP, ATP-binding mutation, leucine-rich repeat; NMR {Homo sapiens}
Probab=20.72 E-value=31 Score=18.17 Aligned_cols=21 Identities=19% Similarity=0.058 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHH
Q 034447 45 FICNLILSCLVRNGKFESSLK 65 (94)
Q Consensus 45 ~t~~~li~~~~~~g~~~~a~~ 65 (94)
..|.+.+..+-+.+.-+-+.+
T Consensus 68 ~A~~vt~~if~~mn~~dL~e~ 88 (106)
T 2km6_A 68 WIRNATVNILEEMNLTELCKM 88 (106)
T ss_dssp HHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHH
Confidence 444444444444444333333
No 368
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=20.62 E-value=82 Score=14.81 Aligned_cols=41 Identities=20% Similarity=0.372 Sum_probs=26.0
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCC
Q 034447 29 LEIYNSITDESDKVNVFICNLILSCLVRNG-KFESSLKLFDKIKQSGL 75 (94)
Q Consensus 29 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~ 75 (94)
.++++..+..|=-.|+.-+..- -| .-+++..+++++.++|.
T Consensus 13 ~~lL~yIr~sGGildI~~~a~k------ygV~kdeV~~~LrrLe~KGL 54 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKV------YGVEKQEVVKLLEALKNKGL 54 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHH------HCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCEEeHHHHHHH------hCCCHHHHHHHHHHHHHCCC
Confidence 3456666655544565554432 22 55788889999988885
No 369
>3qf2_A Nacht, LRR and PYD domains-containing protein 3; six helix bundle, apoptosis; 1.70A {Homo sapiens}
Probab=20.14 E-value=43 Score=17.72 Aligned_cols=25 Identities=4% Similarity=-0.181 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHH
Q 034447 42 VNVFICNLILSCLVRNGKFESSLKL 66 (94)
Q Consensus 42 p~~~t~~~li~~~~~~g~~~~a~~~ 66 (94)
+...+|...+..+-+.+.-+-+.++
T Consensus 61 ~~~~A~~vt~~if~~mn~~dL~e~l 85 (110)
T 3qf2_A 61 GEEKAWAMAVWIFAAINRRDLYEKA 85 (110)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 3445677777777777766655554
Done!